data/r-cran-shazam-1.0.2/NEWS.md:522: substituion ==> substitution
data/r-cran-shazam-1.0.2/NEWS.md:554: occured ==> occurred
data/r-cran-shazam-1.0.2/man/plotBaselineDensity.Rd:47: correspoding ==> corresponding
data/r-cran-shazam-1.0.2/man/plotBaselineSummary.Rd:41: correspoding ==> corresponding
data/r-cran-shazam-1.0.2/man/calcObservedMutations.Rd:129: THT ==> THE, THAT
data/r-cran-shazam-1.0.2/man/calcObservedMutations.Rd:160: THT ==> THE, THAT
data/r-cran-shazam-1.0.2/man/calcObservedMutations.Rd:209: Compre ==> Compare, compère
data/r-cran-shazam-1.0.2/man/distToNearest.Rd:159: matix ==> matrix
data/r-cran-shazam-1.0.2/man/observedMutations.Rd:77: speficied ==> specified
data/r-cran-shazam-1.0.2/man/testBaseline.Rd:21: formated ==> formatted
data/r-cran-shazam-1.0.2/man/createTargetingModel.Rd:39: occuring ==> occurring
data/r-cran-shazam-1.0.2/man/collapseClones.Rd:255: multple ==> multiple
data/r-cran-shazam-1.0.2/man/createMutabilityMatrix.Rd:40: occuring ==> occurring
data/r-cran-shazam-1.0.2/man/createMutabilityMatrix.Rd:69: occuring ==> occurring
data/r-cran-shazam-1.0.2/man/findThreshold.Rd:63: automtically ==> automatically
data/r-cran-shazam-1.0.2/man/createSubstitutionMatrix.Rd:35: occuring ==> occurring
data/r-cran-shazam-1.0.2/man/createSubstitutionMatrix.Rd:88: occuring ==> occurring
data/r-cran-shazam-1.0.2/man/shmulateSeq.Rd:23: bewteen ==> between
data/r-cran-shazam-1.0.2/vignettes/Baseline-Vignette.Rmd:196: analagous ==> analogous
data/r-cran-shazam-1.0.2/vignettes/Baseline-Vignette.Rmd:210: proceedure ==> procedure
data/r-cran-shazam-1.0.2/vignettes/Baseline-Vignette.Rmd:324: fileds ==> fields
data/r-cran-shazam-1.0.2/vignettes/Targeting-Vignette.Rmd:157: diplay ==> display
data/r-cran-shazam-1.0.2/vignettes/Shmulate-Vignette.Rmd:34: availbale ==> available
data/r-cran-shazam-1.0.2/R/Baseline.R:450: regsiter ==> register
data/r-cran-shazam-1.0.2/R/Baseline.R:459: calcualted ==> calculated
data/r-cran-shazam-1.0.2/R/Baseline.R:885: regsiter ==> register
data/r-cran-shazam-1.0.2/R/Baseline.R:1197: regsiter ==> register
data/r-cran-shazam-1.0.2/R/Baseline.R:1273: formated ==> formatted
data/r-cran-shazam-1.0.2/R/Baseline.R:1511: correspoding ==> corresponding
data/r-cran-shazam-1.0.2/R/Baseline.R:1770: correspoding ==> corresponding
data/r-cran-shazam-1.0.2/R/Shmulate.R:21: bewteen ==> between
data/r-cran-shazam-1.0.2/R/Shazam.R:170: subsitution ==> substitution
data/r-cran-shazam-1.0.2/R/Shazam.R:188: subsitution ==> substitution
data/r-cran-shazam-1.0.2/R/DistToNearest.R:751: matix ==> matrix
data/r-cran-shazam-1.0.2/R/DistToNearest.R:1076: automtically ==> automatically
data/r-cran-shazam-1.0.2/R/DistToNearest.R:1350: Defult ==> Default
data/r-cran-shazam-1.0.2/R/DistToNearest.R:1448: scaned ==> scanned
data/r-cran-shazam-1.0.2/R/DistToNearest.R:1456: scaned ==> scanned
data/r-cran-shazam-1.0.2/R/DistToNearest.R:1466: hist ==> heist, his
data/r-cran-shazam-1.0.2/R/TargetingModels.R:299: occuring ==> occurring
data/r-cran-shazam-1.0.2/R/TargetingModels.R:312: occuring ==> occurring
data/r-cran-shazam-1.0.2/R/TargetingModels.R:614: substition ==> substitution
data/r-cran-shazam-1.0.2/R/TargetingModels.R:731: occuring ==> occurring
data/r-cran-shazam-1.0.2/R/TargetingModels.R:747: occuring ==> occurring
data/r-cran-shazam-1.0.2/R/TargetingModels.R:1409: occuring ==> occurring
data/r-cran-shazam-1.0.2/R/TargetingModels.R:2690: targetting ==> targeting
data/r-cran-shazam-1.0.2/R/MutationProfiling.R:226: multple ==> multiple
data/r-cran-shazam-1.0.2/R/MutationProfiling.R:501: regsiter ==> register
data/r-cran-shazam-1.0.2/R/MutationProfiling.R:524: combind ==> combined
data/r-cran-shazam-1.0.2/R/MutationProfiling.R:774: withou ==> without
data/r-cran-shazam-1.0.2/R/MutationProfiling.R:914: threhold ==> threshold
data/r-cran-shazam-1.0.2/R/MutationProfiling.R:1092: documention ==> documentation
data/r-cran-shazam-1.0.2/R/MutationProfiling.R:1314: speficied ==> specified
data/r-cran-shazam-1.0.2/R/MutationProfiling.R:1397: overwritting ==> overwriting
data/r-cran-shazam-1.0.2/R/MutationProfiling.R:1461: regsiter ==> register
data/r-cran-shazam-1.0.2/R/MutationProfiling.R:1634: THT ==> THE, THAT
data/r-cran-shazam-1.0.2/R/MutationProfiling.R:1665: THT ==> THE, THAT
data/r-cran-shazam-1.0.2/R/MutationProfiling.R:1716: Compre ==> Compare, compère
data/r-cran-shazam-1.0.2/R/MutationProfiling.R:2623: overwritting ==> overwriting
data/r-cran-shazam-1.0.2/R/MutationProfiling.R:2671: regsiter ==> register
data/r-cran-shazam-1.0.2/R/MutationProfiling.R:2862: legth ==> length
data/r-cran-shazam-1.0.2/R/MutationProfiling.R:3114: postions ==> positions
data/r-cran-shazam-1.0.2/inst/doc/Baseline-Vignette.R:104: fileds ==> fields
data/r-cran-shazam-1.0.2/inst/doc/Baseline-Vignette.Rmd:196: analagous ==> analogous
data/r-cran-shazam-1.0.2/inst/doc/Baseline-Vignette.Rmd:210: proceedure ==> procedure
data/r-cran-shazam-1.0.2/inst/doc/Baseline-Vignette.Rmd:324: fileds ==> fields
data/r-cran-shazam-1.0.2/inst/doc/Targeting-Vignette.Rmd:157: diplay ==> display
data/r-cran-shazam-1.0.2/inst/doc/Shmulate-Vignette.Rmd:34: availbale ==> available