data/rdp-classifier-2.10.2/README:62: OTU ==> OUT
data/rdp-classifier-2.10.2/README:152: comand ==> command
data/rdp-classifier-2.10.2/README:157: classifer ==> classifier
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:26: atleast ==> at least
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:202: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:203: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:205: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:208: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:211: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:211: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:212: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:214: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:215: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:426: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:427: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:434: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:442: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:442: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:443: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:443: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:443: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:443: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:443: TestNG ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:450: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:480: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:488: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:490: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:585: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:594: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:599: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:599: TestNG ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:603: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:605: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:606: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:612: testng ==> testing
data/rdp-classifier-2.10.2/nbproject/build-impl.xml:646: testng ==> testing
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/Classifier.java:34: mininum ==> minimum
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/Classifier.java:284: cotains ==> contains
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/ClassifierCmd.java:49: writen ==> written
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/TrainingInfo.java:210: postion ==> position
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/cli/CmdOptions.java:76: OTU ==> OUT
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/comparison/ComparisonCmd.java:49: comparsion ==> comparison
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/comparison/ComparisonCmd.java:265: comparsion ==> comparison
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/comparison/SigCalculator.java:62: propotion ==> proportion, promotion
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/comparison/TaxonTree.java:73: begining ==> beginning
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/comparison/TaxonTree.java:115: asigned ==> assigned
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/ClassifierTraineeMaker.java:32: seperated ==> separated
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/ClassifierTraineeMaker.java:37: modifcation ==> modification
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/ClassifierTraineeMaker.java:50: seperated ==> separated
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/LineageSequenceParser.java:99: seperated ==> separated
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/TreeFactory.java:66: seperated ==> separated
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/SortedROCSet.java:35: fpr ==> for, far, fps
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/SortedROCSet.java:35: fpr ==> for, far, fps
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/SortedROCSet.java:38: fpr ==> for, far, fps
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/SortedROCSet.java:38: fpr ==> for, far, fps
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/SortedROCSet.java:44: fpr ==> for, far, fps
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/SortedROCSet.java:44: fpr ==> for, far, fps
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/SortedROCSet.java:54: fpr ==> for, far, fps
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/SortedROCSet.java:58: fpr ==> for, far, fps
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/SortedROCSet.java:66: fpr ==> for, far, fps
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/StatusCountUtils.java:82: FPR ==> FOR, FAR, FPS
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/StatusCountUtils.java:86: fpr ==> for, far, fps
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/StatusCountUtils.java:88: fpr ==> for, far, fps
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/StatusCountUtils.java:96: fpr ==> for, far, fps
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/StatusCountUtils.java:97: fpr ==> for, far, fps
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/StatusCountUtils.java:97: fpr ==> for, far, fps
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/TreeFactory.java:50: seperated ==> separated
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/TreeFactory.java:235: diaplay ==> display
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/distance/PairwiseSeqDistance.java:143: ancestory ==> ancestry
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/distance/PairwiseSeqDistance.java:150: ancestory ==> ancestry
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/distance/PairwiseSeqDistance.java:153: ancestory ==> ancestry
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/distance/PairwiseSeqDistance.java:159: ancestory ==> ancestry
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/distance/PairwiseSeqDistance.java:160: ancestory ==> ancestry
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/distance/PairwiseSeqDistance.java:160: ancestory ==> ancestry
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/distance/TaxaSimilarityMain.java:324: Comparisions ==> Comparisons
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/leaveoneout/LeaveOneOutTesterMain.java:50: seperated ==> separated
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/leaveoneout/LeaveOneOutTesterMain.java:56: specifiy ==> specify
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/leaveoneout/LeaveOneOutTesterMain.java:56: choosen ==> chosen
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/movingwindow/WindowTester.java:72: occurrance ==> occurrence
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/classifier/train/validation/movingwindow/WindowTester.java:73: similiar ==> similar
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/multicompare/MergeTaxonCount.java:84: differenly ==> differently
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/multicompare/visitors/EstimateSPrintVisitor.java:47: Comparision ==> Comparison
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/taxatree/UnifracTree.java:134: indicies ==> indices
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/unifrac/Unifrac.java:55: preform ==> perform
data/rdp-classifier-2.10.2/src/edu/msu/cme/rdp/unifrac/Unifrac.java:57: seperated ==> separated
data/rdp-classifier-2.10.2/test/edu/msu/cme/rdp/classifier/train/validation/NBClassifierTest.java:116: choosen ==> chosen