data/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller/DPTreephaser.cpp:431: Cacluate ==> Calculate data/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller/DPTreephaser.cpp:466: Cacluate ==> Calculate data/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller/DPTreephaser.cpp:1317: Initalize ==> Initialize data/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller/DPTreephaser.cpp:1333: Initalize ==> Initialize data/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller/TreephaserSSE.cpp:191: Initilizes ==> Initializes data/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller/TreephaserSSE.cpp:512: childs ==> children, child's data/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller/TreephaserSSE.cpp:602: paramters ==> parameters data/tvc-5.0.3+git20151221.80e144e+dfsg/BaseCaller/TreephaserSSE.cpp:633: postive ==> positive data/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration/FlowAlignment.cpp:50: refernce ==> reference data/tvc-5.0.3+git20151221.80e144e+dfsg/Calibration/LinearCalibrationModel.h:60: Varaible ==> Variable data/tvc-5.0.3+git20151221.80e144e+dfsg/Util/Utils.h:31: FREEZ ==> FREES, FREEZE data/tvc-5.0.3+git20151221.80e144e+dfsg/Util/Utils.h:55: indiviual ==> individual data/tvc-5.0.3+git20151221.80e144e+dfsg/Util/Utils.h:249: previos ==> previous data/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/HandleVariant.cpp:103: betwen ==> between data/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/TargetsManager.cpp:221: keypairs ==> key pairs data/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/TargetsManager.cpp:228: keypairs ==> key pairs data/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/TargetsManager.cpp:230: keypairs ==> key pairs data/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/TargetsManager.cpp:236: keypairs ==> key pairs data/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/TargetsManager.cpp:238: keypairs ==> key pairs data/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping/InputStructures.h:194: tread ==> thread, treat data/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping/VcfFormat.cpp:71: FRO ==> FOR, FROM data/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping/VcfFormat.cpp:124: FRO ==> FOR, FROM data/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping/VcfFormat.cpp:222: FRO ==> FOR, FROM data/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping/VcfFormat.cpp:267: FRO ==> FOR, FROM data/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping/VcfFormat.cpp:284: FRO ==> FOR, FROM data/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping/VcfFormat.cpp:351: FRO ==> FOR, FROM data/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping/VcfFormat.cpp:471: does'nt ==> doesn't data/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping/ExtendParameters.cpp:172: FRO ==> FOR, FROM data/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Bookkeeping/ExtendParameters.cpp:172: FRO ==> FOR, FROM data/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/EnsembleEval/PosteriorInference.cpp:12: anyting ==> anything data/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter/DecisionTreeData.cpp:53: FRO ==> FOR, FROM data/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter/DecisionTreeData.cpp:218: FRO ==> FOR, FROM data/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Filter/VariantAssist.cpp:602: calcualtion ==> calculation data/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Reads/ExtendedReadInfo.cpp:159: oder ==> order, odor data/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice/ErrorMotifs.cpp:183: lenght ==> length data/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/Splice/ErrorMotifs.cpp:183: lenght ==> length data/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/tvcutils/validate_bed.cpp:736: Suppressable ==> Suppressible data/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/tvcutils/validate_bed.cpp:739: Suppressable ==> Suppressible data/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/tvcutils/validate_bed.cpp:893: Suppressable ==> Suppressible data/tvc-5.0.3+git20151221.80e144e+dfsg/VariantCaller/tvcutils/validate_bed.cpp:897: Suppressable ==> Suppressible data/tvc-5.0.3+git20151221.80e144e+dfsg/bin/variant_caller_pipeline.py:34: specifing ==> specifying data/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/README:78: outut ==> output data/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/README:267: supercedes ==> supersedes data/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src/AlleleParser.cpp:1106: hapend ==> happened data/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src/AlleleParser.cpp:1107: hapend ==> happened data/tvc-5.0.3+git20151221.80e144e+dfsg/external/freebayes/src/AlleleParser.cpp:1232: wit ==> with data/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/Variant.h:185: indicies ==> indices data/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/Variant.h:186: offest ==> offset data/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.c:124: fpr ==> for, far, fps data/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.c:165: fpr ==> for, far, fps data/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.c:212: fpr ==> for, far, fps data/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.c:433: fpr ==> for, far, fps data/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.c:473: fpr ==> for, far, fps data/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.c:475: fpr ==> for, far, fps data/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.c:499: fpr ==> for, far, fps data/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.c:554: fpr ==> for, far, fps data/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.c:647: fpr ==> for, far, fps data/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.c:671: fpr ==> for, far, fps data/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.c:672: fpr ==> for, far, fps data/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.c:673: fpr ==> for, far, fps data/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.c:674: fpr ==> for, far, fps data/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.c:700: fpr ==> for, far, fps data/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.h:42: fpr ==> for, far, fps data/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.h:103: interpetation ==> interpretation data/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/bgzf.h:147: fpr ==> for, far, fps data/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/index.c:107: fpr ==> for, far, fps data/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/khash.h:438: conenient ==> convenient data/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/knetfile.c:87: addapted ==> adapted data/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/knetfile.c:146: modfied ==> modified data/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/main.c:78: fpr ==> for, far, fps data/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/tabix.1:91: specificed ==> specified data/tvc-5.0.3+git20151221.80e144e+dfsg/external/vcflib/tabixpp/tabix.h:118: openned ==> opened data/tvc-5.0.3+git20151221.80e144e+dfsg/file-io/ion_util.h:65: co-ordinate ==> coordinate data/tvc-5.0.3+git20151221.80e144e+dfsg/file-io/ion_util.h:66: co-ordinate ==> coordinate data/tvc-5.0.3+git20151221.80e144e+dfsg/file-io/ion_util.h:72: co-ordinates ==> coordinates data/tvc-5.0.3+git20151221.80e144e+dfsg/file-io/ion_util.h:74: co-ordinate ==> coordinate data/tvc-5.0.3+git20151221.80e144e+dfsg/file-io/ion_util.h:75: co-ordinate ==> coordinate data/tvc-5.0.3+git20151221.80e144e+dfsg/file-io/ion_util.h:82: co-ordinates ==> coordinates data/tvc-5.0.3+git20151221.80e144e+dfsg/file-io/ion_util.h:84: co-ordinate ==> coordinate data/tvc-5.0.3+git20151221.80e144e+dfsg/file-io/ion_util.h:85: co-ordinate ==> coordinate data/tvc-5.0.3+git20151221.80e144e+dfsg/file-io/ion_util.h:92: co-ordinates ==> coordinates data/tvc-5.0.3+git20151221.80e144e+dfsg/file-io/ion_util.h:94: co-ordinate ==> coordinate data/tvc-5.0.3+git20151221.80e144e+dfsg/file-io/ion_util.h:95: co-ordinate ==> coordinate data/tvc-5.0.3+git20151221.80e144e+dfsg/file-io/ion_util.h:132: succesfully ==> successfully data/tvc-5.0.3+git20151221.80e144e+dfsg/share/TVC/examples/example1/expected/TSVC_variants.vcf:19: FRO ==> FOR, FROM data/tvc-5.0.3+git20151221.80e144e+dfsg/share/TVC/examples/example1/expected/TSVC_variants.vcf:56: FRO ==> FOR, FROM data/tvc-5.0.3+git20151221.80e144e+dfsg/share/TVC/examples/example1/expected/TSVC_variants.vcf:70: FRO ==> FOR, FROM data/tvc-5.0.3+git20151221.80e144e+dfsg/share/TVC/examples/example1/expected/TSVC_variants.vcf:70: FRO ==> FOR, FROM data/tvc-5.0.3+git20151221.80e144e+dfsg/share/TVC/examples/example1/expected/small_variants.vcf:19: FRO ==> FOR, FROM data/tvc-5.0.3+git20151221.80e144e+dfsg/share/TVC/examples/example1/expected/small_variants.vcf:56: FRO ==> FOR, FROM data/tvc-5.0.3+git20151221.80e144e+dfsg/share/TVC/examples/example1/expected/small_variants.vcf:65: FRO ==> FOR, FROM data/tvc-5.0.3+git20151221.80e144e+dfsg/share/TVC/examples/example1/expected/small_variants.vcf:65: FRO ==> FOR, FROM data/tvc-5.0.3+git20151221.80e144e+dfsg/.pc/help.patch/VariantCaller/Bookkeeping/ExtendParameters.cpp:168: FRO ==> FOR, FROM data/tvc-5.0.3+git20151221.80e144e+dfsg/.pc/help.patch/VariantCaller/Bookkeeping/ExtendParameters.cpp:168: FRO ==> FOR, FROM data/tvc-5.0.3+git20151221.80e144e+dfsg/.pc/sse.patch/BaseCaller/TreephaserSSE.cpp:232: Initilizes ==> Initializes data/tvc-5.0.3+git20151221.80e144e+dfsg/.pc/sse.patch/BaseCaller/TreephaserSSE.cpp:554: childs ==> children, child's data/tvc-5.0.3+git20151221.80e144e+dfsg/.pc/sse.patch/BaseCaller/TreephaserSSE.cpp:644: paramters ==> parameters data/tvc-5.0.3+git20151221.80e144e+dfsg/.pc/sse.patch/BaseCaller/TreephaserSSE.cpp:675: postive ==> positive data/tvc-5.0.3+git20151221.80e144e+dfsg/.pc/python3.patch/bin/variant_caller_pipeline.py:34: specifing ==> specifying