data/jellyfish1-1.1.11/aclocal.m4: M4 macro processor script, ASCII text data/jellyfish1-1.1.11/HalfLICENSE: ASCII text data/jellyfish1-1.1.11/depcomp: POSIX shell script, ASCII text executable data/jellyfish1-1.1.11/jellyfish-1.1.pc.in: ASCII text data/jellyfish1-1.1.11/jellyfish/atomic_gcc.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/misc.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/file_parser.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/half.h: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/histo_fastq_main_cmdline.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/query_cmdline.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/stats_main_cmdline.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/time.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/allocators_mmap.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/raw_dumper.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/storage.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/compacted_dumper.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/yaggo.cpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/sequence_parser.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/toFloat.h: ASCII text data/jellyfish1-1.1.11/jellyfish/reversible_hash_function.hpp: C source, ASCII text data/jellyfish1-1.1.11/jellyfish/storage.cc: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/cite_cmdline.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/capped_integer.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/hash_merge_cmdline.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/thread_exec.cc: C source, ASCII text data/jellyfish1-1.1.11/jellyfish/floats.cc: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/dump_fastq_main_cmdline.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/jellyfish.cc: C source, ASCII text data/jellyfish1-1.1.11/jellyfish/seq_qual_parser.cc: C source, ASCII text data/jellyfish1-1.1.11/jellyfish/sorted_dumper.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/parse_quake.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/parse_dna.cc: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/circular_buffer.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/hash_fastq_merge_cmdline.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/counter.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/floats.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/divisor.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/histo_main.cc: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/compacted_hash.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/locking_hash_counters.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/eLut.h: ASCII text data/jellyfish1-1.1.11/jellyfish/allocators_mmap.cc: C source, ASCII text data/jellyfish1-1.1.11/jellyfish/test_read_parser.cc: C source, ASCII text data/jellyfish1-1.1.11/jellyfish/backtrace.cc: C source, ASCII text data/jellyfish1-1.1.11/jellyfish/generate_sequence.cc: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/double_fifo_input.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/noop_dumper.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/parse_dna.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/dump_main.cc: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/hash_merge.cc: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/mapped_file.cc: C source, ASCII text data/jellyfish1-1.1.11/jellyfish/fastq_dumper.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/allocators_malloc.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/misc.cc: C source, ASCII text data/jellyfish1-1.1.11/jellyfish/sequence_parser.cc: C source, ASCII text data/jellyfish1-1.1.11/jellyfish/direct_sorted_dumper.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/hash_function.hpp: C source, ASCII text data/jellyfish1-1.1.11/jellyfish/thread_exec.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/direct_indexing_array.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/half.cpp: C source, ISO-8859 text data/jellyfish1-1.1.11/jellyfish/parse_qual_dna.cc: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/dump_main_cmdline.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/file_parser.cc: C source, ASCII text data/jellyfish1-1.1.11/jellyfish/dump_fastq_main.cc: C source, ASCII text data/jellyfish1-1.1.11/jellyfish/aligned_values_array.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/square_binary_matrix.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/time.cc: C source, ASCII text data/jellyfish1-1.1.11/jellyfish/invertible_hash_array.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/dbg.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/generate_sequence_cmdline.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/concurrent_queues.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/dumper.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/parse_read.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/backtrace.hpp: ASCII text data/jellyfish1-1.1.11/jellyfish/mer_counting.hpp: C source, ASCII text data/jellyfish1-1.1.11/jellyfish/dbg.cc: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/heap.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/simple_growing_array.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/err.cc: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/mersenne.cpp: C source, ASCII text, with CRLF line terminators data/jellyfish1-1.1.11/jellyfish/hash.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/stats_main.cc: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/count_main_cmdline.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/query_main.cc: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/fstream_default.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/err.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/mer_counter.cc: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/parse_read.cc: C source, ASCII text data/jellyfish1-1.1.11/jellyfish/randomc.h: C++ source, ASCII text, with CRLF, LF line terminators data/jellyfish1-1.1.11/jellyfish/hash_fastq_merge.cc: C source, ASCII text data/jellyfish1-1.1.11/jellyfish/parse_quake.cc: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/read_parser.cc: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/allocators_shm.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/seq_qual_parser.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/simple_circular_buffer.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/offsets_key_value.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/yaggo.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/histo_main_cmdline.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/token_ring.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/histo_fastq_main.cc: C source, ASCII text data/jellyfish1-1.1.11/jellyfish/parse_qual_dna.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/locks_pthread.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/square_binary_matrix.cc: C source, ASCII text data/jellyfish1-1.1.11/jellyfish/cite.cc: C source, ASCII text data/jellyfish1-1.1.11/jellyfish/mapped_file.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/read_parser.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/test_double_fifo_input.cc: C++ source, ASCII text data/jellyfish1-1.1.11/jellyfish/dna_codes.cc: C source, ASCII text data/jellyfish1-1.1.11/jellyfish/dna_codes.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/Makefile.in: makefile script, ASCII text, with very long lines, with escape sequences data/jellyfish1-1.1.11/m4/ltsugar.m4: M4 macro processor script, ASCII text data/jellyfish1-1.1.11/m4/lt~obsolete.m4: M4 macro processor script, ASCII text data/jellyfish1-1.1.11/m4/ltversion.m4: M4 macro processor script, ASCII text data/jellyfish1-1.1.11/m4/ltoptions.m4: M4 macro processor script, ASCII text data/jellyfish1-1.1.11/m4/libtool.m4: M4 macro processor script, ASCII text, with very long lines data/jellyfish1-1.1.11/config.sub: POSIX shell script, ASCII text executable data/jellyfish1-1.1.11/gtest.mk: ASCII text data/jellyfish1-1.1.11/LICENSE: ASCII text data/jellyfish1-1.1.11/missing: POSIX shell script, ASCII text executable data/jellyfish1-1.1.11/install-sh: POSIX shell script, ASCII text executable data/jellyfish1-1.1.11/README: ASCII text data/jellyfish1-1.1.11/configure: POSIX shell script, ASCII text executable, with very long lines data/jellyfish1-1.1.11/tests/multi_file.sh: POSIX shell script, ASCII text executable data/jellyfish1-1.1.11/tests/parallel_fastq_sequence_hashing.sh: POSIX shell script, ASCII text executable data/jellyfish1-1.1.11/tests/parallel_hashing.sh: POSIX shell script, ASCII text executable data/jellyfish1-1.1.11/tests/merge.sh: POSIX shell script, ASCII text executable data/jellyfish1-1.1.11/tests/raw_hash.sh: POSIX shell script, ASCII text executable data/jellyfish1-1.1.11/tests/compat.sh.in: ASCII text data/jellyfish1-1.1.11/tests/big.sh: POSIX shell script, ASCII text executable data/jellyfish1-1.1.11/tests/small.sh: POSIX shell script, ASCII text executable data/jellyfish1-1.1.11/tests/from_stream.sh: POSIX shell script, ASCII text executable data/jellyfish1-1.1.11/tests/multi_file_fastq.sh: POSIX shell script, ASCII text executable data/jellyfish1-1.1.11/tests/generate_sequence.sh: POSIX shell script, ASCII text executable data/jellyfish1-1.1.11/tests/parsers.sh: POSIX shell script, ASCII text executable data/jellyfish1-1.1.11/tests/from_stream_fastq.sh: POSIX shell script, ASCII text executable data/jellyfish1-1.1.11/tests/parallel_fastq_hashing.sh: POSIX shell script, ASCII text executable data/jellyfish1-1.1.11/tests/min_qual.sh: POSIX shell script, ASCII text executable data/jellyfish1-1.1.11/tests/parallel_direct_indexing.sh: POSIX shell script, ASCII text executable data/jellyfish1-1.1.11/tests/generate_fastq_sequence.sh: POSIX shell script, ASCII text executable data/jellyfish1-1.1.11/tests/serial_direct_indexing.sh: POSIX shell script, ASCII text executable data/jellyfish1-1.1.11/tests/serial_hashing.sh: POSIX shell script, ASCII text executable data/jellyfish1-1.1.11/tests/parallel_fastq_direct_indexing.sh: POSIX shell script, ASCII text executable data/jellyfish1-1.1.11/config.h.in: ASCII text data/jellyfish1-1.1.11/configure.ac: M4 macro processor script, ASCII text data/jellyfish1-1.1.11/unit_tests/unit_tests.sh: POSIX shell script, ASCII text executable data/jellyfish1-1.1.11/unit_tests/test_square_binary_matrix.cc: C++ source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/include/gtest/internal/gtest-port.h: C source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/include/gtest/internal/gtest-tuple.h: C++ source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/include/gtest/internal/gtest-filepath.h: C++ source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/include/gtest/internal/gtest-type-util.h: C++ source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/include/gtest/internal/gtest-linked_ptr.h: C++ source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/include/gtest/internal/gtest-string.h: C++ source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/include/gtest/internal/gtest-param-util-generated.h: C++ source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/include/gtest/internal/gtest-death-test-internal.h: C++ source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/include/gtest/internal/gtest-param-util.h: C++ source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/include/gtest/internal/gtest-internal.h: C++ source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/include/gtest/gtest-typed-test.h: C++ source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/include/gtest/gtest_pred_impl.h: C source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/include/gtest/gtest-message.h: C++ source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/include/gtest/gtest-death-test.h: C++ source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/include/gtest/gtest-param-test.h: C source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/include/gtest/gtest-spi.h: C++ source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/include/gtest/gtest-test-part.h: C++ source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/include/gtest/gtest_prod.h: C source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/include/gtest/gtest-printers.h: C++ source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/include/gtest/gtest.h: C++ source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/src/gtest-port.cc: C++ source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/src/gtest-all.cc: C source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/src/gtest-death-test.cc: C++ source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/src/gtest-filepath.cc: C++ source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/src/gtest-typed-test.cc: C++ source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/src/gtest-test-part.cc: C++ source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/src/gtest_main.cc: C source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/src/gtest.cc: C++ source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/src/gtest-printers.cc: C++ source, ASCII text data/jellyfish1-1.1.11/unit_tests/gtest/src/gtest-internal-inl.h: C++ source, ASCII text data/jellyfish1-1.1.11/unit_tests/test_offsets_key_value.cc: C++ source, ASCII text data/jellyfish1-1.1.11/unit_tests/test_simple_circular_buffer.cc: C++ source, ASCII text data/jellyfish1-1.1.11/config.guess: POSIX shell script, ASCII text executable data/jellyfish1-1.1.11/doc/jellyfish.pdf: PDF document, version 1.4 data/jellyfish1-1.1.11/doc/jellyfish.man: troff or preprocessor input, ASCII text data/jellyfish1-1.1.11/ltmain.sh: ASCII text data/jellyfish1-1.1.11/debian/changelog: ASCII text data/jellyfish1-1.1.11/debian/control: ASCII text data/jellyfish1-1.1.11/debian/copyright: UTF-8 Unicode text data/jellyfish1-1.1.11/debian/docs: ASCII text data/jellyfish1-1.1.11/debian/install: ASCII text data/jellyfish1-1.1.11/debian/links: ASCII text data/jellyfish1-1.1.11/debian/lintian-overrides: ASCII text data/jellyfish1-1.1.11/debian/manpages: ASCII text data/jellyfish1-1.1.11/debian/patches/arm64.patch: unified diff output, ASCII text data/jellyfish1-1.1.11/debian/patches/man: unified diff output, ASCII text data/jellyfish1-1.1.11/debian/patches/mips.patch: unified diff output, ASCII text data/jellyfish1-1.1.11/debian/patches/series: ASCII text data/jellyfish1-1.1.11/debian/rules: a /usr/bin/make -f script, ASCII text executable data/jellyfish1-1.1.11/debian/salsa-ci.yml: ASCII text data/jellyfish1-1.1.11/debian/source/format: ASCII text data/jellyfish1-1.1.11/debian/upstream/metadata: ASCII text data/jellyfish1-1.1.11/debian/watch: ASCII text data/jellyfish1-1.1.11/.pc/.version: ASCII text data/jellyfish1-1.1.11/.pc/.quilt_patches: ASCII text data/jellyfish1-1.1.11/.pc/.quilt_series: ASCII text data/jellyfish1-1.1.11/.pc/applied-patches: ASCII text data/jellyfish1-1.1.11/.pc/man/doc/jellyfish.man: troff or preprocessor input, ASCII text data/jellyfish1-1.1.11/.pc/arm64.patch/jellyfish/dna_codes.cc: C source, ASCII text data/jellyfish1-1.1.11/.pc/arm64.patch/jellyfish/dna_codes.hpp: C++ source, ASCII text data/jellyfish1-1.1.11/.pc/mips.patch/Makefile.am: ASCII text data/jellyfish1-1.1.11/Makefile.am: ASCII text