data/kallisto-0.46.2+dfsg/.gitignore: ASCII text data/kallisto-0.46.2+dfsg/.gitmodules: empty data/kallisto-0.46.2+dfsg/.ycm_extra_conf.py: Python script, ASCII text executable data/kallisto-0.46.2+dfsg/INSTALL.md: ASCII text data/kallisto-0.46.2+dfsg/README.md: ASCII text data/kallisto-0.46.2+dfsg/astyle.txt: ASCII text data/kallisto-0.46.2+dfsg/ext/catch/CMakeLists.txt: ASCII text data/kallisto-0.46.2+dfsg/gen_release.sh: Bourne-Again shell script, ASCII text executable data/kallisto-0.46.2+dfsg/gulpfile.js: ASCII text data/kallisto-0.46.2+dfsg/license.txt: UTF-8 Unicode text data/kallisto-0.46.2+dfsg/src/BUSData.cpp: C source, ASCII text data/kallisto-0.46.2+dfsg/src/BUSData.h: C source, ASCII text data/kallisto-0.46.2+dfsg/src/BUSTools.cpp: C source, ASCII text data/kallisto-0.46.2+dfsg/src/BUSTools.h: C source, ASCII text data/kallisto-0.46.2+dfsg/src/Bootstrap.cpp: C source, ASCII text data/kallisto-0.46.2+dfsg/src/Bootstrap.h: C++ source, ASCII text data/kallisto-0.46.2+dfsg/src/EMAlgorithm.h: C source, ASCII text data/kallisto-0.46.2+dfsg/src/Fusion.hpp: C source, ASCII text data/kallisto-0.46.2+dfsg/src/GeneModel.cpp: C source, ASCII text data/kallisto-0.46.2+dfsg/src/GeneModel.h: C++ source, ASCII text data/kallisto-0.46.2+dfsg/src/H5Writer.cpp: C source, ASCII text data/kallisto-0.46.2+dfsg/src/H5Writer.h: C++ source, ASCII text data/kallisto-0.46.2+dfsg/src/Kmer.cpp: C++ source, ASCII text data/kallisto-0.46.2+dfsg/src/Kmer.hpp: C++ source, ASCII text data/kallisto-0.46.2+dfsg/src/KmerHashTable.h: C++ source, ASCII text data/kallisto-0.46.2+dfsg/src/KmerIndex.h: C source, ASCII text data/kallisto-0.46.2+dfsg/src/KmerIterator.cpp: C source, ASCII text data/kallisto-0.46.2+dfsg/src/KmerIterator.hpp: C++ source, ASCII text data/kallisto-0.46.2+dfsg/src/Merge.cpp: C source, ASCII text data/kallisto-0.46.2+dfsg/src/Merge.h: C source, ASCII text data/kallisto-0.46.2+dfsg/src/MinCollector.cpp: C source, ASCII text data/kallisto-0.46.2+dfsg/src/MinCollector.h: C source, ASCII text data/kallisto-0.46.2+dfsg/src/Multinomial.hpp: C++ source, ASCII text data/kallisto-0.46.2+dfsg/src/PlaintextWriter.cpp: C source, ASCII text data/kallisto-0.46.2+dfsg/src/PlaintextWriter.h: C++ source, ASCII text data/kallisto-0.46.2+dfsg/src/PseudoBam.cpp: C source, ASCII text data/kallisto-0.46.2+dfsg/src/PseudoBam.h: C source, ASCII text data/kallisto-0.46.2+dfsg/src/common.cpp: C source, ASCII text data/kallisto-0.46.2+dfsg/src/common.h: C source, ASCII text data/kallisto-0.46.2+dfsg/src/h5utils.cpp: C source, ASCII text data/kallisto-0.46.2+dfsg/src/h5utils.h: C++ source, ASCII text data/kallisto-0.46.2+dfsg/src/hash.cpp: C source, ASCII text data/kallisto-0.46.2+dfsg/src/hash.hpp: C source, ASCII text data/kallisto-0.46.2+dfsg/src/main.cpp: C++ source, ASCII text data/kallisto-0.46.2+dfsg/src/weights.cpp: C source, ASCII text data/kallisto-0.46.2+dfsg/src/weights.h: C source, ASCII text data/kallisto-0.46.2+dfsg/src/CMakeLists.txt: ASCII text data/kallisto-0.46.2+dfsg/src/Inspect.h: C++ source, ASCII text data/kallisto-0.46.2+dfsg/src/KmerIndex.cpp: C source, ASCII text data/kallisto-0.46.2+dfsg/src/ProcessReads.h: C++ source, ASCII text, with very long lines data/kallisto-0.46.2+dfsg/src/ProcessReads.cpp: C source, ASCII text data/kallisto-0.46.2+dfsg/test/README.md: ASCII text data/kallisto-0.46.2+dfsg/test/Snakefile: ASCII text data/kallisto-0.46.2+dfsg/test/chrom.txt: ASCII text data/kallisto-0.46.2+dfsg/test/reads_1.fastq.gz: gzip compressed data, was "reads_1.fastq", last modified: Sun Dec 8 19:09:18 2013, from Unix, original size modulo 2^32 1283063 data/kallisto-0.46.2+dfsg/test/reads_2.fastq.gz: gzip compressed data, was "reads_2.fastq", last modified: Sun Dec 8 19:09:18 2013, from Unix, original size modulo 2^32 1283063 data/kallisto-0.46.2+dfsg/test/sc_reads_1.fastq.gz: gzip compressed data, last modified: Fri Nov 8 16:28:03 2019, from Unix, original size modulo 2^32 1044774 data/kallisto-0.46.2+dfsg/test/sc_reads_2.fastq.gz: gzip compressed data, was "reads_2.fastq", last modified: Sun Dec 8 19:09:18 2013, from Unix, original size modulo 2^32 1283063 data/kallisto-0.46.2+dfsg/test/transcripts.fasta.gz: gzip compressed data, was "transcripts.fasta", last modified: Mon Jan 29 13:14:49 2018, from Unix, original size modulo 2^32 28844 data/kallisto-0.46.2+dfsg/test/transcripts.gtf.gz: gzip compressed data, was "transcripts.gtf", last modified: Mon Jan 29 13:45:40 2018, max compression, from Unix, original size modulo 2^32 105238 data/kallisto-0.46.2+dfsg/unit_tests/CMakeLists.txt: ASCII text data/kallisto-0.46.2+dfsg/unit_tests/input/10_trans_gt_500_bp.fasta: ASCII text data/kallisto-0.46.2+dfsg/unit_tests/input/Get: cannot open `data/kallisto-0.46.2+dfsg/unit_tests/input/Get' (No such file or directory) Subseq.ipynb: cannot open `Subseq.ipynb' (No such file or directory) data/kallisto-0.46.2+dfsg/unit_tests/input/r1.fastq: ASCII text data/kallisto-0.46.2+dfsg/unit_tests/input/r2.fastq: ASCII text data/kallisto-0.46.2+dfsg/unit_tests/input/short_reads.fastq: ASCII text data/kallisto-0.46.2+dfsg/unit_tests/main.cpp: C source, ASCII text data/kallisto-0.46.2+dfsg/unit_tests/test_index.cpp: C source, ASCII text data/kallisto-0.46.2+dfsg/unit_tests/test_multinomial.cpp: C source, ASCII text data/kallisto-0.46.2+dfsg/unit_tests/test_weights.cpp: C source, ASCII text data/kallisto-0.46.2+dfsg/unit_tests/test_kmerhashtable.cpp: C++ source, ASCII text data/kallisto-0.46.2+dfsg/debian/README.test: UTF-8 Unicode text data/kallisto-0.46.2+dfsg/debian/changelog: ASCII text data/kallisto-0.46.2+dfsg/debian/control: ASCII text data/kallisto-0.46.2+dfsg/debian/copyright: UTF-8 Unicode text data/kallisto-0.46.2+dfsg/debian/kallisto-examples.docs: ASCII text data/kallisto-0.46.2+dfsg/debian/kallisto-examples.install: ASCII text data/kallisto-0.46.2+dfsg/debian/kallisto.docs: ASCII text data/kallisto-0.46.2+dfsg/debian/kallisto.install: ASCII text data/kallisto-0.46.2+dfsg/debian/patches/Check_busOptions.seq_length_before_accessing.patch: unified diff output, ASCII text data/kallisto-0.46.2+dfsg/debian/patches/htslib1.3: unified diff output, ASCII text data/kallisto-0.46.2+dfsg/debian/patches/series: ASCII text data/kallisto-0.46.2+dfsg/debian/patches/spelling: unified diff output, ASCII text data/kallisto-0.46.2+dfsg/debian/patches/use_debian_packaged_htslib.patch: unified diff output, ASCII text data/kallisto-0.46.2+dfsg/debian/rules: a /usr/bin/make -f script, ASCII text executable data/kallisto-0.46.2+dfsg/debian/salsa-ci.yml: ASCII text data/kallisto-0.46.2+dfsg/debian/source/format: ASCII text data/kallisto-0.46.2+dfsg/debian/tests/control: ASCII text data/kallisto-0.46.2+dfsg/debian/tests/run-unit-test: Bourne-Again shell script, ASCII text executable data/kallisto-0.46.2+dfsg/debian/upstream/metadata: UTF-8 Unicode text data/kallisto-0.46.2+dfsg/debian/watch: ASCII text data/kallisto-0.46.2+dfsg/.pc/.version: ASCII text data/kallisto-0.46.2+dfsg/.pc/.quilt_patches: ASCII text data/kallisto-0.46.2+dfsg/.pc/.quilt_series: ASCII text data/kallisto-0.46.2+dfsg/.pc/applied-patches: ASCII text data/kallisto-0.46.2+dfsg/.pc/use_debian_packaged_htslib.patch/CMakeLists.txt: ASCII text data/kallisto-0.46.2+dfsg/.pc/use_debian_packaged_htslib.patch/src/CMakeLists.txt: ASCII text data/kallisto-0.46.2+dfsg/.pc/spelling/src/Inspect.h: C++ source, ASCII text data/kallisto-0.46.2+dfsg/.pc/htslib1.3/src/KmerIndex.cpp: C source, ASCII text data/kallisto-0.46.2+dfsg/.pc/htslib1.3/src/ProcessReads.cpp: C source, ASCII text data/kallisto-0.46.2+dfsg/.pc/htslib1.3/src/ProcessReads.h: C++ source, ASCII text, with very long lines data/kallisto-0.46.2+dfsg/.pc/htslib1.3/unit_tests/test_kmerhashtable.cpp: C++ source, ASCII text data/kallisto-0.46.2+dfsg/.pc/Check_busOptions.seq_length_before_accessing.patch/src/ProcessReads.cpp: C source, ASCII text data/kallisto-0.46.2+dfsg/CMakeLists.txt: ASCII text