data/libbiod-0.2.3+git20191120.b8eecef/.gitignore:                                               ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/.travis.yml:                                              ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/LICENSE:                                                  ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/README.md:                                                UTF-8 Unicode text
data/libbiod-0.2.3+git20191120.b8eecef/RELEASE-NOTES.md:                                         ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/VERSION:                                                  ASCII text
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data/libbiod-0.2.3+git20191120.b8eecef/bio/core/bgzf/chunk.d:                                    C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/core/bgzf/compress.d:                                 Java source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/core/bgzf/constants.d:                                ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/core/bgzf/inputstream.d:                              Java source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/core/bgzf/outputstream.d:                             Java source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/core/bgzf/virtualoffset.d:                            C++ source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/core/call.d:                                          C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/core/decompress.d:                                    C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/core/genotype.d:                                      C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/core/kmer.d:                                          C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/core/region.d:                                        C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/core/sequence.d:                                      C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/core/tinymap.d:                                       C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/algo.d:                                    C++ source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/bylinefast.d:                              C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/exception.d:                               Java source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/format.d:                                  C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/memoize.d:                                 Java source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/outbuffer.d:                               C++ source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/range.d:                                   C++ source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/roundbuf.d:                                C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/stream.d:                                  C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/switchendianness.d:                        Java source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/tmpfile.d:                                 Java source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/core/utils/zlib.d:                                    C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/etc/ragel/Makefile:                                   makefile script, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/etc/ragel/maf_block.rl:                               C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/etc/ragel/region.rl:                                  C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/etc/ragel/sam_alignment.rl:                           ASCII text, with very long lines
data/libbiod-0.2.3+git20191120.b8eecef/bio/etc/ragel/workarounds/fix_static_const.sh:            Bourne-Again shell script, ASCII text executable
data/libbiod-0.2.3+git20191120.b8eecef/bio/etc/ragel/workarounds/fix_switch_case_fallthrough.sh: Bourne-Again shell script, ASCII text executable
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/README.md:                       ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/bam/header.d:                    C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/bam/reader.d:                    C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/bam/writer.d:                    C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/bgzf.d:                          C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/bgzf_writer.d:                   C++ source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/constants.d:                     C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/hashing.d:                       Java source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/logger.d:                        ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/pileup.d:                        C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/reads.d:                         Java source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/experimental/hts/unpack.d:                        Java source, UTF-8 Unicode text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/file/fai.d:                                       C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/file/fasta.d:                                     C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/file/fastq.d:                                     C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/genotype/maf.d:                                   Java source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/genotype/snp.d:                                   C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/abstractreader.d:                         Java source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/bai/bin.d:                                C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/bai/indexing.d:                           C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/baifile.d:                                C++ source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/baseinfo.d:                               C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/cigar.d:                                  C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/constants.d:                              ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/md/core.d:                                ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/md/operation.d:                           C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/md/parse.d:                               Java source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/md/reconstruct.d:                         Java source, ASCII text, with very long lines
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/multireader.d:                            C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/pileup.d:                                 C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/randomaccessmanager.d:                    C++ source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/read.d:                                   C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/reader.d:                                 C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/readrange.d:                              C++ source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/reference.d:                              C++ source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/referenceinfo.d:                          C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/region.d:                                 C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/splitter.d:                               C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/tagvalue.d:                               C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/validation/alignment.d:                   C++ source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/validation/samheader.d:                   C++ source, ASCII text, with very long lines
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/bam/writer.d:                                 Java source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/iontorrent/flowcall.d:                        C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/iontorrent/flowindex.d:                       C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/sam/header.d:                                 Java source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/sam/reader.d:                                 C++ source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/sam/utils/fastrecordparser.d:                 C source, ASCII text, with very long lines
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/sam/utils/recordparser.d:                     ASCII text, with very long lines
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/snpcallers/maq.d:                             C++ source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/snpcallers/simple.d:                          C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/thirdparty/msgpack.d:                         C++ source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/utils/array.d:                                Java source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/utils/graph.d:                                C++ source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/utils/samheadermerger.d:                      C++ source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/hts/utils/value.d:                                Java source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/maf/block.d:                                      C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/maf/parser.d:                                     Java source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/maf/reader.d:                                     C++ source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/range/splitter.d:                                 C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/sff/constants.d:                                  ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/sff/index.d:                                      C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/sff/read.d:                                       C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/sff/reader.d:                                     C++ source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/sff/readrange.d:                                  C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/sff/utils/roundup.d:                              Java source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/bio/std/sff/writer.d:                                     C++ source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/contrib/undead/LICENSE:                                   ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/contrib/undead/README.md:                                 ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/contrib/undead/cstream.d:                                 Java source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/contrib/undead/doformat.d:                                C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/contrib/undead/internal/file.d:                           ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/contrib/undead/stream.d:                                  Java source, ASCII text
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data/libbiod-0.2.3+git20191120.b8eecef/dub.json:                                                 JSON data
data/libbiod-0.2.3+git20191120.b8eecef/examples/calculate_gc_content_from_reference.d:           C source, UTF-8 Unicode text
data/libbiod-0.2.3+git20191120.b8eecef/examples/create_bam_from_scratch.d:                       C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/examples/iterate_tags.d:                                  C source, UTF-8 Unicode text
data/libbiod-0.2.3+git20191120.b8eecef/examples/make_pileup.d:                                   C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/examples/print_base_info.d:                               C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/examples/read_bam_file.d:                                 C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/examples/transverse_multiple_bam_files.d:                 C source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/test/data/BXD_geno.txt.gz:                                gzip compressed data, was "BXD_geno.txt", last modified: Thu Aug 10 16:19:04 2017, from Unix, original size modulo 2^32 4707218
data/libbiod-0.2.3+git20191120.b8eecef/test/data/b.sam:                                          ASCII text, with very long lines
data/libbiod-0.2.3+git20191120.b8eecef/test/data/b7_295_chunk.bam:                               Blocked GNU Zip Format (BGZF; gzip compatible), block length 705
data/libbiod-0.2.3+git20191120.b8eecef/test/data/bins.bam:                                       Blocked GNU Zip Format (BGZF; gzip compatible), block length 110
data/libbiod-0.2.3+git20191120.b8eecef/test/data/bins.bam.bai:                                   SAMtools BAI (BAM indexing format), with 3 reference sequences
data/libbiod-0.2.3+git20191120.b8eecef/test/data/corrupted_zlib_archive.bam:                     Blocked GNU Zip Format (BGZF; gzip compatible), block length 103
data/libbiod-0.2.3+git20191120.b8eecef/test/data/duplicated_block_size.bam:                      Blocked GNU Zip Format (BGZF; gzip compatible), block length 103
data/libbiod-0.2.3+git20191120.b8eecef/test/data/ex1_header.bam:                                 Blocked GNU Zip Format (BGZF; gzip compatible), block length 103
data/libbiod-0.2.3+git20191120.b8eecef/test/data/ex1_header.bam.bai:                             SAMtools BAI (BAM indexing format), with 2 reference sequences
data/libbiod-0.2.3+git20191120.b8eecef/test/data/ex1_header.sam:                                 Sequence Alignment/Map (SAM), with header version 1.3
data/libbiod-0.2.3+git20191120.b8eecef/test/data/illu_20_chunk.bam:                              Blocked GNU Zip Format (BGZF; gzip compatible), block length 4685
data/libbiod-0.2.3+git20191120.b8eecef/test/data/ion_20_chunk.bam:                               Blocked GNU Zip Format (BGZF; gzip compatible), block length 1159
data/libbiod-0.2.3+git20191120.b8eecef/test/data/long_header.bam:                                Blocked GNU Zip Format (BGZF; gzip compatible), block length 8837
data/libbiod-0.2.3+git20191120.b8eecef/test/data/mg1655_chunk.bam:                               Blocked GNU Zip Format (BGZF; gzip compatible), block length 705
data/libbiod-0.2.3+git20191120.b8eecef/test/data/no_block_size.bam:                              gzip compressed data, extra field, original size modulo 2^32 0
data/libbiod-0.2.3+git20191120.b8eecef/test/data/tags.bam:                                       Blocked GNU Zip Format (BGZF; gzip compatible), block length 77
data/libbiod-0.2.3+git20191120.b8eecef/test/data/tags.bam.bai:                                   SAMtools BAI (BAM indexing format), with 2 reference sequences
data/libbiod-0.2.3+git20191120.b8eecef/test/data/wrong_bc_subfield_length.bam:                   Blocked GNU Zip Format (BGZF; gzip compatible), block length 103
data/libbiod-0.2.3+git20191120.b8eecef/test/data/wrong_extra_gzip_length.bam:                    Blocked GNU Zip Format (BGZF; gzip compatible), block length 103
data/libbiod-0.2.3+git20191120.b8eecef/test/unittests.d:                                         Java source, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/debian/changelog:                                         ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/debian/control:                                           ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/debian/copyright:                                         ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/debian/libbiod-dev.install:                               ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/debian/libbiod0.install:                                  ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/debian/patches/01_fix_clean_target.patch:                 unified diff output, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/debian/patches/02_respect-env-dflags.patch:               unified diff output, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/debian/patches/03_add-meson-build.patch:                  unified diff output, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/debian/patches/series:                                    ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/debian/rules:                                             a /usr/bin/make -f script, ASCII text executable
data/libbiod-0.2.3+git20191120.b8eecef/debian/source/format:                                     ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/debian/upstream/metadata:                                 ASCII text
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data/libbiod-0.2.3+git20191120.b8eecef/.pc/.version:                                             ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/.pc/.quilt_patches:                                       ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/.pc/.quilt_series:                                        ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/.pc/applied-patches:                                      ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/.pc/01_fix_clean_target.patch/Makefile:                   makefile script, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/.pc/02_respect-env-dflags.patch/Makefile:                 makefile script, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/.pc/03_add-meson-build.patch/meson.build:                 empty
data/libbiod-0.2.3+git20191120.b8eecef/.pc/03_add-meson-build.patch/meson_options.txt:           empty
data/libbiod-0.2.3+git20191120.b8eecef/Makefile:                                                 makefile script, ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/meson.build:                                              ASCII text
data/libbiod-0.2.3+git20191120.b8eecef/meson_options.txt:                                        ASCII text