data/libseqlib-1.1.2+dfsg/.gitignore: troff or preprocessor input, ASCII text data/libseqlib-1.1.2+dfsg/.gitmodules: ASCII text data/libseqlib-1.1.2+dfsg/.travis.scripts/builddox.sh: Bourne-Again shell script, ASCII text executable data/libseqlib-1.1.2+dfsg/.travis.scripts/clang.sh: Bourne-Again shell script, ASCII text executable data/libseqlib-1.1.2+dfsg/.travis.scripts/coveralls.sh: Bourne-Again shell script, ASCII text executable, with very long lines data/libseqlib-1.1.2+dfsg/.travis.scripts/publish-doxygen.sh: Bourne-Again shell script, ASCII text executable data/libseqlib-1.1.2+dfsg/.travis.scripts/travis-before-install.sh: Bourne-Again shell script, ASCII text executable data/libseqlib-1.1.2+dfsg/.travis.scripts/travis-install.sh: Bourne-Again shell script, ASCII text executable data/libseqlib-1.1.2+dfsg/.travis.yml: ASCII text, with very long lines data/libseqlib-1.1.2+dfsg/Doxyfile: ASCII text data/libseqlib-1.1.2+dfsg/LICENSE: ASCII text data/libseqlib-1.1.2+dfsg/Makefile.in: makefile script, ASCII text data/libseqlib-1.1.2+dfsg/README.md: C source, ASCII text data/libseqlib-1.1.2+dfsg/SeqLib/BWAWrapper.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/SeqLib/BamReader.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/SeqLib/BamWriter.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/SeqLib/FastqReader.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/SeqLib/GenomicRegion.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/SeqLib/GenomicRegionCollection.cpp: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/SeqLib/GenomicRegionCollection.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/SeqLib/IntervalTree.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/SeqLib/ReadFilter.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/SeqLib/SeqLibCommon.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/SeqLib/SeqLibUtils.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/SeqLib/SeqPlot.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/SeqLib/UnalignedSequence.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/SeqLib/aho_corasick.hpp: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/SeqLib/BFC.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/SeqLib/BamRecord.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/SeqLib/BamHeader.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/SeqLib/RefGenome.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/SeqLib/FermiAssembler.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/SeqLib/BamWalker.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/autogen.sh: POSIX shell script, ASCII text executable data/libseqlib-1.1.2+dfsg/benchmark/Makefile: makefile script, ASCII text, with very long lines data/libseqlib-1.1.2+dfsg/benchmark/benchmark.cpp: C source, ASCII text data/libseqlib-1.1.2+dfsg/config.h.in: ASCII text data/libseqlib-1.1.2+dfsg/configure: POSIX shell script, ASCII text executable data/libseqlib-1.1.2+dfsg/depcomp: POSIX shell script, ASCII text executable data/libseqlib-1.1.2+dfsg/install-sh: POSIX shell script, ASCII text executable data/libseqlib-1.1.2+dfsg/issue_tracking.md: ASCII text, with very long lines data/libseqlib-1.1.2+dfsg/missing: POSIX shell script, ASCII text executable data/libseqlib-1.1.2+dfsg/seq_test/Makefile.in: makefile script, ASCII text, with very long lines data/libseqlib-1.1.2+dfsg/seq_test/config.h.in: ASCII text data/libseqlib-1.1.2+dfsg/seq_test/configure: POSIX shell script, ASCII text executable data/libseqlib-1.1.2+dfsg/seq_test/configure.ac: ASCII text data/libseqlib-1.1.2+dfsg/seq_test/seq_test.cpp: C source, ASCII text data/libseqlib-1.1.2+dfsg/seq_test/Makefile.am: ASCII text data/libseqlib-1.1.2+dfsg/src/.clang-format: ASCII text data/libseqlib-1.1.2+dfsg/src/BWAWrapper.cpp: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/src/BamHeader.cpp: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/src/BamWriter.cpp: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/src/FastqReader.cpp: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/src/GenomicRegion.cpp: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/src/Makefile.in: makefile script, ASCII text, with very long lines data/libseqlib-1.1.2+dfsg/src/RefGenome.cpp: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/src/SeqPlot.cpp: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/src/non_api/BamStats.cpp: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/src/non_api/BamStats.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/src/non_api/Fractions.cpp: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/src/non_api/Fractions.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/src/non_api/Histogram.cpp: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/src/non_api/Histogram.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/src/non_api/STCoverage.cpp: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/src/non_api/STCoverage.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/src/non_api/snowtools.cpp: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/src/seqtools/Makefile.am: ASCII text data/libseqlib-1.1.2+dfsg/src/seqtools/Makefile.in: makefile script, ASCII text, with very long lines data/libseqlib-1.1.2+dfsg/src/seqtools/seqtools.cpp: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/src/BFC.cpp: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/src/FermiAssembler.cpp: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/src/ReadFilter.cpp: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/src/Makefile.am: ASCII text data/libseqlib-1.1.2+dfsg/src/BamRecord.cpp: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/src/BamReader.cpp: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/debian/changelog: ASCII text data/libseqlib-1.1.2+dfsg/debian/control: ASCII text data/libseqlib-1.1.2+dfsg/debian/copyright: ASCII text data/libseqlib-1.1.2+dfsg/debian/libseqlib-dev.lintian-overrides: ASCII text data/libseqlib-1.1.2+dfsg/debian/libseqlib1.symbols: ASCII text, with very long lines data/libseqlib-1.1.2+dfsg/debian/patches/adapt_to_debian_fermi-lite.patch: unified diff output, ASCII text data/libseqlib-1.1.2+dfsg/debian/patches/dynamic_lib.patch: unified diff output, ASCII text data/libseqlib-1.1.2+dfsg/debian/patches/fix_fermi-lite_usage.patch: unified diff output, ASCII text data/libseqlib-1.1.2+dfsg/debian/patches/fix_htslib_usage.patch: unified diff output, ASCII text data/libseqlib-1.1.2+dfsg/debian/patches/fix_private_htslib_usage.patch: unified diff output, ASCII text data/libseqlib-1.1.2+dfsg/debian/patches/fml_include_path.patch: unified diff output, ASCII text data/libseqlib-1.1.2+dfsg/debian/patches/pkg-config.patch: unified diff output, ASCII text data/libseqlib-1.1.2+dfsg/debian/patches/series: ASCII text data/libseqlib-1.1.2+dfsg/debian/patches/use_debian_packaged_jsoncpp.patch: unified diff output, ASCII text data/libseqlib-1.1.2+dfsg/debian/patches/use_debian_packaged_libs.patch: unified diff output, ASCII text data/libseqlib-1.1.2+dfsg/debian/patches/use_debian_packaged_ssw.patch: unified diff output, ASCII text data/libseqlib-1.1.2+dfsg/debian/patches/use_private_htslib_headers.patch: unified diff output, ASCII text data/libseqlib-1.1.2+dfsg/debian/rules: a /usr/bin/make -f script, ASCII text executable data/libseqlib-1.1.2+dfsg/debian/salsa-ci.yml: ASCII text data/libseqlib-1.1.2+dfsg/debian/source/format: ASCII text data/libseqlib-1.1.2+dfsg/debian/upstream/metadata: UTF-8 Unicode text data/libseqlib-1.1.2+dfsg/debian/watch: ASCII text data/libseqlib-1.1.2+dfsg/.pc/.version: ASCII text data/libseqlib-1.1.2+dfsg/.pc/.quilt_patches: ASCII text data/libseqlib-1.1.2+dfsg/.pc/.quilt_series: ASCII text data/libseqlib-1.1.2+dfsg/.pc/applied-patches: ASCII text data/libseqlib-1.1.2+dfsg/.pc/use_debian_packaged_libs.patch/Makefile.am: automake makefile script, ASCII text data/libseqlib-1.1.2+dfsg/.pc/adapt_to_debian_fermi-lite.patch/SeqLib/BFC.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/.pc/adapt_to_debian_fermi-lite.patch/SeqLib/FermiAssembler.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/.pc/adapt_to_debian_fermi-lite.patch/src/BFC.cpp: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/.pc/adapt_to_debian_fermi-lite.patch/src/FermiAssembler.cpp: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/.pc/fix_fermi-lite_usage.patch/SeqLib/BFC.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/.pc/fix_htslib_usage.patch/SeqLib/BamRecord.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/.pc/fix_htslib_usage.patch/SeqLib/BamHeader.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/.pc/fix_htslib_usage.patch/SeqLib/RefGenome.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/.pc/fix_htslib_usage.patch/src/ReadFilter.cpp: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/.pc/fml_include_path.patch/seq_test/Makefile.am: ASCII text data/libseqlib-1.1.2+dfsg/.pc/fml_include_path.patch/src/Makefile.am: ASCII text data/libseqlib-1.1.2+dfsg/.pc/fml_include_path.patch/SeqLib/FermiAssembler.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/.pc/dynamic_lib.patch/src/Makefile.am: ASCII text data/libseqlib-1.1.2+dfsg/.pc/dynamic_lib.patch/configure.ac: ASCII text data/libseqlib-1.1.2+dfsg/.pc/use_debian_packaged_jsoncpp.patch/src/Makefile.am: ASCII text data/libseqlib-1.1.2+dfsg/.pc/use_debian_packaged_jsoncpp.patch/seq_test/Makefile.am: ASCII text data/libseqlib-1.1.2+dfsg/.pc/use_debian_packaged_ssw.patch/seq_test/Makefile.am: ASCII text data/libseqlib-1.1.2+dfsg/.pc/use_debian_packaged_ssw.patch/src/Makefile.am: ASCII text data/libseqlib-1.1.2+dfsg/.pc/use_debian_packaged_ssw.patch/src/BamRecord.cpp: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/.pc/pkg-config.patch/libseqlib.pc.in: empty data/libseqlib-1.1.2+dfsg/.pc/pkg-config.patch/Makefile.am: automake makefile script, ASCII text data/libseqlib-1.1.2+dfsg/.pc/pkg-config.patch/configure.ac: ASCII text data/libseqlib-1.1.2+dfsg/.pc/fix_private_htslib_usage.patch/SeqLib/BamWalker.h: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/.pc/fix_private_htslib_usage.patch/src/BamReader.cpp: C++ source, ASCII text data/libseqlib-1.1.2+dfsg/libseqlib.pc.in: ASCII text data/libseqlib-1.1.2+dfsg/Makefile.am: automake makefile script, ASCII text data/libseqlib-1.1.2+dfsg/configure.ac: ASCII text