data/metaphlan2-2.9.22/.hg_archival.txt: ASCII text data/metaphlan2-2.9.22/.hgignore: ASCII text data/metaphlan2-2.9.22/.hgsub: ASCII text data/metaphlan2-2.9.22/.hgsubstate: ASCII text data/metaphlan2-2.9.22/.hgtags: ASCII text data/metaphlan2-2.9.22/__init__.py: Python script, ASCII text executable data/metaphlan2-2.9.22/changeset.txt: ASCII text data/metaphlan2-2.9.22/license.txt: ASCII text, with very long lines data/metaphlan2-2.9.22/plugin_setup.py: Python script, ASCII text executable data/metaphlan2-2.9.22/strainphlan_src/logging.ini: ASCII text data/metaphlan2-2.9.22/strainphlan_src/add_metadata_tree.py: Python script, ASCII text executable data/metaphlan2-2.9.22/strainphlan_src/build_tree_single_strain.py: Python script, ASCII text executable data/metaphlan2-2.9.22/strainphlan_src/compute_distance.py: Python script, ASCII text executable data/metaphlan2-2.9.22/strainphlan_src/compute_distance_all.py: Python script, ASCII text executable data/metaphlan2-2.9.22/strainphlan_src/dump_file.py: Python script, ASCII text executable data/metaphlan2-2.9.22/strainphlan_src/extract_markers.py: Python script, ASCII text executable data/metaphlan2-2.9.22/strainphlan_src/fastx_len_filter.py: Python script, ASCII text executable data/metaphlan2-2.9.22/strainphlan_src/fix_AF1.py: Python script, ASCII text executable data/metaphlan2-2.9.22/strainphlan_src/mixed_utils.py: Python script, ASCII text executable data/metaphlan2-2.9.22/strainphlan_src/ooSubprocess.py: Python script, ASCII text executable data/metaphlan2-2.9.22/strainphlan_src/plot_tree_ete2.py: Python script, ASCII text executable data/metaphlan2-2.9.22/strainphlan_src/plot_tree_graphlan.py: Python script, ASCII text executable data/metaphlan2-2.9.22/strainphlan_src/sam_filter.py: Python script, ASCII text executable data/metaphlan2-2.9.22/strainphlan_src/sample2markers.py: Python script, ASCII text executable data/metaphlan2-2.9.22/strainphlan_src/which.py: Python script, ASCII text executable data/metaphlan2-2.9.22/strainphlan_tutorial/step1_download.sh: Bourne-Again shell script, ASCII text executable data/metaphlan2-2.9.22/strainphlan_tutorial/step2_fastq2sam.sh: Bourne-Again shell script, ASCII text executable data/metaphlan2-2.9.22/strainphlan_tutorial/step3_sam2marker.sh: Bourne-Again shell script, ASCII text executable data/metaphlan2-2.9.22/strainphlan_tutorial/step4_extract_db_marker.sh: Bourne-Again shell script, ASCII text executable data/metaphlan2-2.9.22/strainphlan_tutorial/step5_build_tree.sh: Bourne-Again shell script, ASCII text executable data/metaphlan2-2.9.22/strainphlan_tutorial/step6_build_tree_single_strain.sh: Bourne-Again shell script, ASCII text executable data/metaphlan2-2.9.22/utils/merge_metaphlan_tables.py: Python script, ASCII text executable, with very long lines data/metaphlan2-2.9.22/utils/species2genomes.txt: ASCII text, with very long lines data/metaphlan2-2.9.22/utils/extract_markers.py: Python script, ASCII text executable data/metaphlan2-2.9.22/utils/metaphlan2krona.py: Python script, ASCII text executable data/metaphlan2-2.9.22/utils/plot_bug.py: Python script, ASCII text executable data/metaphlan2-2.9.22/utils/read_fastx.py: Python script, ASCII text executable data/metaphlan2-2.9.22/debian/bin/metaphlan2: POSIX shell script, ASCII text executable data/metaphlan2-2.9.22/debian/bin/strainphlan: POSIX shell script, ASCII text executable data/metaphlan2-2.9.22/debian/changelog: ASCII text data/metaphlan2-2.9.22/debian/clean: ASCII text data/metaphlan2-2.9.22/debian/control: ASCII text data/metaphlan2-2.9.22/debian/copyright: ASCII text data/metaphlan2-2.9.22/debian/docs: ASCII text data/metaphlan2-2.9.22/debian/images/1574126761-RAxML_bestTree.s__Bacteroides_caccae.tree.metadata.png: PNG image data, 300 x 361, 8-bit/color RGBA, non-interlaced data/metaphlan2-2.9.22/debian/images/1771497600-snp_distance.png: PNG image data, 1948 x 392, 8-bit/color RGBA, non-interlaced data/metaphlan2-2.9.22/debian/images/476974413-tree_alignment.png: PNG image data, 2030 x 464, 8-bit/color RGBA, non-interlaced data/metaphlan2-2.9.22/debian/images/get-pngs: POSIX shell script, ASCII text executable data/metaphlan2-2.9.22/debian/install: ASCII text data/metaphlan2-2.9.22/debian/manpages: ASCII text data/metaphlan2-2.9.22/debian/metaphlan2.1: troff or preprocessor input, ASCII text data/metaphlan2-2.9.22/debian/patches/_metaphlan2.py.patch: unified diff output, ASCII text data/metaphlan2-2.9.22/debian/patches/mpa_dir-is-usr_share_metaphlan2.patch: unified diff output, ASCII text, with very long lines data/metaphlan2-2.9.22/debian/patches/python3.patch: unified diff output, ASCII text, with very long lines data/metaphlan2-2.9.22/debian/patches/series: ASCII text data/metaphlan2-2.9.22/debian/patches/spelling.patch: unified diff output, ASCII text data/metaphlan2-2.9.22/debian/rules: a /usr/bin/make -f script, ASCII text executable data/metaphlan2-2.9.22/debian/source/format: ASCII text data/metaphlan2-2.9.22/debian/source/include-binaries: ASCII text data/metaphlan2-2.9.22/debian/strainphlan.1: troff or preprocessor input, ASCII text data/metaphlan2-2.9.22/debian/upstream/metadata: UTF-8 Unicode text data/metaphlan2-2.9.22/debian/watch: ASCII text data/metaphlan2-2.9.22/.pc/.version: ASCII text data/metaphlan2-2.9.22/.pc/.quilt_patches: ASCII text data/metaphlan2-2.9.22/.pc/.quilt_series: ASCII text data/metaphlan2-2.9.22/.pc/applied-patches: ASCII text data/metaphlan2-2.9.22/.pc/mpa_dir-is-usr_share_metaphlan2.patch/metaphlan2.py: Python script, ASCII text executable data/metaphlan2-2.9.22/.pc/mpa_dir-is-usr_share_metaphlan2.patch/README.md: ASCII text, with very long lines data/metaphlan2-2.9.22/.pc/spelling.patch/strainphlan.py: Python script, ASCII text executable data/metaphlan2-2.9.22/.pc/spelling.patch/metaphlan2.py: Python script, ASCII text executable data/metaphlan2-2.9.22/.pc/spelling.patch/README.md: ASCII text, with very long lines data/metaphlan2-2.9.22/.pc/_metaphlan2.py.patch/_metaphlan2.py: Python script, ASCII text executable data/metaphlan2-2.9.22/.pc/python3.patch/metaphlan2.py: Python script, ASCII text executable data/metaphlan2-2.9.22/.pc/python3.patch/strainphlan.py: Python script, ASCII text executable data/metaphlan2-2.9.22/.pc/python3.patch/utils/extract_markers.py: Python script, ASCII text executable data/metaphlan2-2.9.22/.pc/python3.patch/utils/metaphlan2krona.py: Python script, ASCII text executable data/metaphlan2-2.9.22/.pc/python3.patch/utils/plot_bug.py: Python script, ASCII text executable data/metaphlan2-2.9.22/.pc/python3.patch/utils/read_fastx.py: Python script, ASCII text executable data/metaphlan2-2.9.22/.pc/python3.patch/strainphlan_tutorial/step3_sam2marker.sh: Bourne-Again shell script, ASCII text executable data/metaphlan2-2.9.22/.pc/python3.patch/strainphlan_tutorial/step4_extract_db_marker.sh: Bourne-Again shell script, ASCII text executable data/metaphlan2-2.9.22/.pc/python3.patch/strainphlan_tutorial/step5_build_tree.sh: Bourne-Again shell script, ASCII text executable data/metaphlan2-2.9.22/.pc/python3.patch/strainphlan_tutorial/step6_build_tree_single_strain.sh: Bourne-Again shell script, ASCII text executable data/metaphlan2-2.9.22/.pc/python3.patch/README.md: ASCII text, with very long lines data/metaphlan2-2.9.22/.pc/python3.patch/strainphlan_src/add_metadata_tree.py: Python script, ASCII text executable data/metaphlan2-2.9.22/.pc/python3.patch/strainphlan_src/build_tree_single_strain.py: Python script, ASCII text executable data/metaphlan2-2.9.22/.pc/python3.patch/strainphlan_src/compute_distance.py: Python script, ASCII text executable data/metaphlan2-2.9.22/.pc/python3.patch/strainphlan_src/compute_distance_all.py: Python script, ASCII text executable data/metaphlan2-2.9.22/.pc/python3.patch/strainphlan_src/dump_file.py: Python script, ASCII text executable data/metaphlan2-2.9.22/.pc/python3.patch/strainphlan_src/extract_markers.py: Python script, ASCII text executable data/metaphlan2-2.9.22/.pc/python3.patch/strainphlan_src/fastx_len_filter.py: Python script, ASCII text executable data/metaphlan2-2.9.22/.pc/python3.patch/strainphlan_src/fix_AF1.py: Python script, ASCII text executable data/metaphlan2-2.9.22/.pc/python3.patch/strainphlan_src/mixed_utils.py: Python script, ASCII text executable data/metaphlan2-2.9.22/.pc/python3.patch/strainphlan_src/ooSubprocess.py: Python script, ASCII text executable data/metaphlan2-2.9.22/.pc/python3.patch/strainphlan_src/plot_tree_ete2.py: Python script, ASCII text executable data/metaphlan2-2.9.22/.pc/python3.patch/strainphlan_src/plot_tree_graphlan.py: Python script, ASCII text executable data/metaphlan2-2.9.22/.pc/python3.patch/strainphlan_src/sam_filter.py: Python script, ASCII text executable data/metaphlan2-2.9.22/.pc/python3.patch/strainphlan_src/sample2markers.py: Python script, ASCII text executable data/metaphlan2-2.9.22/.pc/python3.patch/strainphlan_src/which.py: Python script, ASCII text executable data/metaphlan2-2.9.22/_metaphlan2.py: Python script, ASCII text executable data/metaphlan2-2.9.22/metaphlan2.py: Python script, ASCII text executable data/metaphlan2-2.9.22/strainphlan.py: Python script, ASCII text executable data/metaphlan2-2.9.22/README.md: ASCII text, with very long lines