data/microbiomeutil-20101212+dfsg1/WigeoN/util/smooth.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/WigeoN/util/makeConservationProfile.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/WigeoN/util/eco_nast_freq.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/WigeoN/util/eco.prokMSA: ASCII text, with very long lines data/microbiomeutil-20101212+dfsg1/WigeoN/util/compute_quant_bins.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/WigeoN/util/apply_eco_Mask.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/WigeoN/util/all_vs_all_WigeoN.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/WigeoN/sample_data/runMe.sh: ASCII text data/microbiomeutil-20101212+dfsg1/WigeoN/sample_data/Makefile: makefile script, ASCII text data/microbiomeutil-20101212+dfsg1/WigeoN/sample_data/chims.NAST: ASCII text data/microbiomeutil-20101212+dfsg1/WigeoN/README: ASCII text, with very long lines data/microbiomeutil-20101212+dfsg1/WigeoN/PerlLib/CdbTools.pm: Perl5 module source, ASCII text data/microbiomeutil-20101212+dfsg1/WigeoN/PerlLib/BHStats.pm: Perl5 module source, ASCII text data/microbiomeutil-20101212+dfsg1/WigeoN/PerlLib/Fasta_reader.pm: Perl5 module source, ASCII text data/microbiomeutil-20101212+dfsg1/WigeoN/Makefile: makefile script, ASCII text data/microbiomeutil-20101212+dfsg1/WigeoN/LICENSE: ISO-8859 text, with very long lines data/microbiomeutil-20101212+dfsg1/WigeoN/data/rRNA16S.gold.NAST_ALIGNED.fasta.cons: ASCII text data/microbiomeutil-20101212+dfsg1/WigeoN/data/eco.prokMSA: ASCII text, with very long lines data/microbiomeutil-20101212+dfsg1/WigeoN/data/DE_quantiles.dat: ASCII text data/microbiomeutil-20101212+dfsg1/WigeoN/WigeoN.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/WigeoN/run_CM_to_WigeoN.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/WigeoN/run_WigeoN.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/RESOURCES/rRNA16S.gold.NAST_ALIGNED.fasta: ASCII text data/microbiomeutil-20101212+dfsg1/RESOURCES/rRNA16S.gold.fasta: ASCII text, with very long lines data/microbiomeutil-20101212+dfsg1/RESOURCES/README: ASCII text data/microbiomeutil-20101212+dfsg1/RESOURCES/Makefile: makefile script, ASCII text data/microbiomeutil-20101212+dfsg1/RESOURCES/genus_counts: ASCII text data/microbiomeutil-20101212+dfsg1/RESOURCES/genus_counter.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/README: ASCII text data/microbiomeutil-20101212+dfsg1/NAST-iEr/util/show_malign_no_gap_no_identical_cols.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/NAST-iEr/util/show_malign_no_gap.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/NAST-iEr/util/mfasta_remove_gaps.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/NAST-iEr/util/mfasta_remove_allGapCols.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/NAST-iEr/util/masks/lanemask.NAST: ASCII text data/microbiomeutil-20101212+dfsg1/NAST-iEr/util/masks/eco.prokMSA: ASCII text, with very long lines data/microbiomeutil-20101212+dfsg1/NAST-iEr/util/apply_NAST_MASK.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/NAST-iEr/sample_data/testForUtils.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/NAST-iEr/sample_data/template_seqs.NAST: ASCII text, with very long lines data/microbiomeutil-20101212+dfsg1/NAST-iEr/sample_data/query_seq.fasta: ASCII text, with very long lines data/microbiomeutil-20101212+dfsg1/NAST-iEr/sample_data/Makefile: makefile script, ASCII text data/microbiomeutil-20101212+dfsg1/NAST-iEr/sample_data/runMe.sh: POSIX shell script, ASCII text executable data/microbiomeutil-20101212+dfsg1/NAST-iEr/README: ASCII text, with very long lines data/microbiomeutil-20101212+dfsg1/NAST-iEr/PerlLib/Nuc_translator.pm: Perl script text executable data/microbiomeutil-20101212+dfsg1/NAST-iEr/PerlLib/CdbTools.pm: Perl5 module source, ASCII text data/microbiomeutil-20101212+dfsg1/NAST-iEr/PerlLib/Fasta_reader.pm: Perl5 module source, ASCII text data/microbiomeutil-20101212+dfsg1/NAST-iEr/NAST-iEr.c: C source, ASCII text data/microbiomeutil-20101212+dfsg1/NAST-iEr/LICENSE: ISO-8859 text, with very long lines data/microbiomeutil-20101212+dfsg1/NAST-iEr/iterative_refinement/quant_differences.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/NAST-iEr/iterative_refinement/iteratively_realign_db_selfsearch.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/NAST-iEr/iterative_refinement/compare_DBs.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/NAST-iEr/Makefile: makefile script, ASCII text data/microbiomeutil-20101212+dfsg1/NAST-iEr/run_NAST-iEr.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/Makefile: ASCII text data/microbiomeutil-20101212+dfsg1/docs/old.microbiomeutil.asciidoc: UTF-8 Unicode text, with very long lines data/microbiomeutil-20101212+dfsg1/docs/microbiomeutil.html: HTML document, UTF-8 Unicode text, with very long lines, with CRLF line terminators data/microbiomeutil-20101212+dfsg1/docs/microbiomeutil.asciidoc: UTF-8 Unicode text, with very long lines data/microbiomeutil-20101212+dfsg1/ChimeraSlayer/util/merge_CS_n_CM_breakpoints.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/ChimeraSlayer/util/merge_CM_CS_outputs.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/ChimeraSlayer/util/CMCS_to_treeImg.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/ChimeraSlayer/util/breakpoint_to_profile.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/ChimeraSlayer/util/CS_add_taxonomy.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/ChimeraSlayer/sample_data/Makefile: makefile script, ASCII text data/microbiomeutil-20101212+dfsg1/ChimeraSlayer/sample_data/chims.NAST: ASCII text data/microbiomeutil-20101212+dfsg1/ChimeraSlayer/sample_data/runMe.sh: POSIX shell script, ASCII text executable data/microbiomeutil-20101212+dfsg1/ChimeraSlayer/PerlLib/TaxonomyGraph.pm: Perl script text executable data/microbiomeutil-20101212+dfsg1/ChimeraSlayer/PerlLib/NAST_to_Eco_coords.pm: Perl script text executable data/microbiomeutil-20101212+dfsg1/ChimeraSlayer/PerlLib/CdbTools.pm: Perl5 module source, ASCII text data/microbiomeutil-20101212+dfsg1/ChimeraSlayer/PerlLib/BHStats.pm: Perl5 module source, ASCII text data/microbiomeutil-20101212+dfsg1/ChimeraSlayer/PerlLib/AlignCompare.pm: Perl5 module source, ASCII text data/microbiomeutil-20101212+dfsg1/ChimeraSlayer/PerlLib/Fasta_reader.pm: Perl5 module source, ASCII text data/microbiomeutil-20101212+dfsg1/ChimeraSlayer/Makefile: makefile script, ASCII text data/microbiomeutil-20101212+dfsg1/ChimeraSlayer/LICENSE: ISO-8859 text, with very long lines data/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraPhyloChecker/CPS_to_CPC.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/run_chimeraParentSelector.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/CPS_to_RENAST.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/CPC_to_CPS.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/CM_plotter.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/ChimeraSlayer/ChimeraSlayer.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/debian/README.test: UTF-8 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data/microbiomeutil-20101212+dfsg1/debian/microbiomeutil.links: ASCII text data/microbiomeutil-20101212+dfsg1/debian/nast-ier.1: troff or preprocessor input, ASCII text data/microbiomeutil-20101212+dfsg1/debian/nast-ier.docs: ASCII text data/microbiomeutil-20101212+dfsg1/debian/nast-ier.install: ASCII text data/microbiomeutil-20101212+dfsg1/debian/nast-ier.links: ASCII text data/microbiomeutil-20101212+dfsg1/debian/nast-ier.manpages: ASCII text data/microbiomeutil-20101212+dfsg1/debian/patches/enable_tests_in_local_dir.patch: unified diff output, ASCII text data/microbiomeutil-20101212+dfsg1/debian/patches/find_relocated_libraries.patch: unified diff output, ASCII text data/microbiomeutil-20101212+dfsg1/debian/patches/find_relocated_resources.patch: unified diff output, ASCII text data/microbiomeutil-20101212+dfsg1/debian/patches/fix_perl_interpreter.patch: unified diff output, ASCII text data/microbiomeutil-20101212+dfsg1/debian/patches/hardening.patch: unified diff output, ASCII text data/microbiomeutil-20101212+dfsg1/debian/patches/series: ASCII text data/microbiomeutil-20101212+dfsg1/debian/rules: a /usr/bin/make -f script, ASCII text executable data/microbiomeutil-20101212+dfsg1/debian/source/format: ASCII text data/microbiomeutil-20101212+dfsg1/debian/tests/control: ASCII text data/microbiomeutil-20101212+dfsg1/debian/tests/run-unit-test: POSIX shell script, ASCII text executable data/microbiomeutil-20101212+dfsg1/debian/upstream/metadata: UTF-8 Unicode text data/microbiomeutil-20101212+dfsg1/debian/watch: ASCII text data/microbiomeutil-20101212+dfsg1/debian/wigeon.1: troff or preprocessor input, ASCII text data/microbiomeutil-20101212+dfsg1/debian/wigeon.docs: ASCII text data/microbiomeutil-20101212+dfsg1/debian/wigeon.install: ASCII text data/microbiomeutil-20101212+dfsg1/debian/wigeon.links: ASCII text data/microbiomeutil-20101212+dfsg1/debian/wigeon.manpages: ASCII text data/microbiomeutil-20101212+dfsg1/.pc/.version: ASCII text data/microbiomeutil-20101212+dfsg1/.pc/.quilt_patches: ASCII text data/microbiomeutil-20101212+dfsg1/.pc/.quilt_series: ASCII text data/microbiomeutil-20101212+dfsg1/.pc/applied-patches: ASCII text data/microbiomeutil-20101212+dfsg1/.pc/fix_perl_interpreter.patch/NAST-iEr/PerlLib/Fasta_reader.pm: Perl script text executable data/microbiomeutil-20101212+dfsg1/.pc/fix_perl_interpreter.patch/ChimeraSlayer/PerlLib/Fasta_reader.pm: Perl script text executable data/microbiomeutil-20101212+dfsg1/.pc/fix_perl_interpreter.patch/WigeoN/PerlLib/Fasta_reader.pm: Perl script text executable data/microbiomeutil-20101212+dfsg1/.pc/fix_perl_interpreter.patch/RESOURCES/genus_counter.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/.pc/find_relocated_resources.patch/ChimeraSlayer/ChimeraSlayer.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/.pc/find_relocated_resources.patch/ChimeraSlayer/util/CS_add_taxonomy.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/.pc/find_relocated_resources.patch/NAST-iEr/run_NAST-iEr.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/.pc/find_relocated_resources.patch/WigeoN/run_WigeoN.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/.pc/find_relocated_libraries.patch/ChimeraSlayer/ChimeraSlayer.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/.pc/find_relocated_libraries.patch/NAST-iEr/run_NAST-iEr.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/.pc/find_relocated_libraries.patch/WigeoN/WigeoN.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/.pc/find_relocated_libraries.patch/WigeoN/run_CM_to_WigeoN.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/.pc/find_relocated_libraries.patch/WigeoN/run_WigeoN.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/.pc/hardening.patch/NAST-iEr/Makefile: makefile script, ASCII text data/microbiomeutil-20101212+dfsg1/.pc/enable_tests_in_local_dir.patch/NAST-iEr/run_NAST-iEr.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/.pc/enable_tests_in_local_dir.patch/NAST-iEr/sample_data/runMe.sh: POSIX shell script, ASCII text executable data/microbiomeutil-20101212+dfsg1/.pc/enable_tests_in_local_dir.patch/ChimeraSlayer/sample_data/runMe.sh: POSIX shell script, ASCII text executable data/microbiomeutil-20101212+dfsg1/.pc/enable_tests_in_local_dir.patch/ChimeraSlayer/ChimeraSlayer.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/.pc/enable_tests_in_local_dir.patch/ChimeraSlayer/util/CS_add_taxonomy.pl: Perl script text executable data/microbiomeutil-20101212+dfsg1/.pc/enable_tests_in_local_dir.patch/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl: Perl script text executable