data/pbbam-1.6.0+dfsg/.clang-format: ASCII text data/pbbam-1.6.0+dfsg/.gitignore: ASCII text data/pbbam-1.6.0+dfsg/.travis.yml: ASCII text data/pbbam-1.6.0+dfsg/CHANGELOG.md: ASCII text, with CRLF line terminators data/pbbam-1.6.0+dfsg/INSTALL.md: ASCII text, with CRLF line terminators data/pbbam-1.6.0+dfsg/LICENSE.txt: ASCII text data/pbbam-1.6.0+dfsg/README.md: ASCII text, with very long lines data/pbbam-1.6.0+dfsg/bamboo_build.sh: Bourne-Again shell script, ASCII text executable data/pbbam-1.6.0+dfsg/docs/Doxyfile.in: ASCII text data/pbbam-1.6.0+dfsg/docs/Makefile: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Compare.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Compare_AlignedEnd.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Compare_AlignedStart.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Compare_AlignedStrand.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Compare_BarcodeForward.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Compare_BarcodeQuality.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Compare_BarcodeReverse.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Compare_FullName.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Compare_LocalContextFlag.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Compare_MapQuality.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Compare_MovieName.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Compare_NumDeletedBases.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Compare_NumInsertedBases.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Compare_NumMatches.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Compare_NumMismatches.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Compare_QueryEnd.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Compare_QueryStart.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Compare_ReadAccuracy.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Compare_ReadGroupId.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Compare_ReadGroupNumericId.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Compare_ReferenceEnd.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Compare_ReferenceId.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Compare_ReferenceName.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Compare_ReferenceStart.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Compare_TypeFromOperator.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Compare_TypeToName.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Compare_Zmw.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/EntireFileQuery.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/EntireFileQuery_BamFilename.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/EntireFileQuery_NonConst.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/GenomicIntervalQuery.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/GenomicIntervalQuery_Reuse.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiAlignedEndFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiAlignedLengthFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiAlignedStartFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiAlignedStrandFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiBarcodeFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiBarcodeForwardFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiBarcodeQualityFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiBarcodeReverseFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiBarcodesFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiBuilder_WithReader.txt: C source, ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiBuilder_WithWriter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiFilterQuery.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiFilter_Composition.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiFilter_CustomFilter.txt: C source, ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiFilter_Interface.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiIdentityFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiLocalContextFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiMapQualityFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiMovieNameFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiNumDeletedBasesFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiNumInsertedBasesFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiNumMatchesFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiNumMismatchesFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiQueryEndFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiQueryLengthFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiQueryNameFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiQueryStartFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiReadAccuracyFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiReadGroupFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiReferenceEndFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiReferenceIdFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiReferenceNameFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiReferenceStartFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/PbiZmwFilter.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/Tag_AsciiCtor.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/WhitelistedZmwReadStitcher.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/ZmwGroupQuery.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/code/ZmwQuery.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/plaintext/AlignmentPrinterOutput.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/examples/plaintext/PbiFilter_DataSetXmlFilters.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/meson.build: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/Accuracy.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/AlignmentPrinter.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/AlignmentSet.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/BaiIndexedBamReader.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/BamFile.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/BamHeader.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/BamReader.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/BamRecord.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/BamRecordImpl.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/BamRecordView.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/BamTagCodec.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/BamWriter.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/BarcodeSet.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/Cigar.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/CigarOperation.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/Compare.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/Config.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/ConsensusAlignmentSet.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/ConsensusReadSet.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/ContigSet.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/DataSet.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/DataSetBase.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/DataSetMetadata.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/EntireFileQuery.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/ExtensionElement.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/Extensions.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/ExternalResource.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/ExternalResources.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/FileIndex.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/FileIndices.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/Filter.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/Filters.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/Frames.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/GenomicInterval.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/GenomicIntervalCompositeBamReader.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/GenomicIntervalQuery.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/HdfSubreadSet.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/IndexResultBlock.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/IndexedFastaReader.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/Interval.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/InvalidSequencingChemistryException.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/LocalContextFlags.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/NamespaceInfo.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/NamespaceRegistry.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/Orientation.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/ParentTool.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/PbiBuilder.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/PbiFile.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/PbiFilter.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/PbiFilterCompositeBamReader.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/PbiFilterQuery.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/PbiFilterTypes.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/PbiIndexedBamReader.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/PbiRawBarcodeData.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/PbiRawBasicData.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/PbiRawData.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/PbiRawMappedData.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/PbiRawReferenceData.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/PbiReferenceEntry.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/Position.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/ProgramInfo.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/QualityValue.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/QualityValues.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/ReadGroupInfo.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/ReferenceSet.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/SamTagCodec.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/SequenceInfo.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/SequentialCompositeBamReader.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/Strand.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/SubDataSets.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/SubreadSet.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/Tag.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/TagCollection.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/VirtualPolymeraseBamRecord.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/VirtualPolymeraseCompositeReader.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/VirtualPolymeraseReader.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/VirtualRegion.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/VirtualRegionType.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/VirtualRegionTypeMap.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/ZmwGroupQuery.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/ZmwQuery.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api/ZmwWhitelistVirtualReader.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/api_reference.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/commandline_utilities.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/conf.py: ASCII text data/pbbam-1.6.0+dfsg/docs/source/getting_started.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/index.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/pacbio-theme/static/headerGradient.jpg: JPEG image data, JFIF standard 1.02, aspect ratio, density 100x100, segment length 16, baseline, precision 8, 1280x78, components 3 data/pbbam-1.6.0+dfsg/docs/source/pacbio-theme/static/pacbio.css: ASCII text data/pbbam-1.6.0+dfsg/docs/source/pacbio-theme/static/pacbioLogo.png: PNG image data, 170 x 40, 8-bit/color RGBA, non-interlaced data/pbbam-1.6.0+dfsg/docs/source/pacbio-theme/static/pygments.css: troff or preprocessor input, ASCII text data/pbbam-1.6.0+dfsg/docs/source/pacbio-theme/theme.conf: ASCII text data/pbbam-1.6.0+dfsg/docs/source/requirements.txt: ASCII text data/pbbam-1.6.0+dfsg/docs/source/tools/bam2sam.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/tools/pbindex.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/tools/pbindexdump.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/source/tools/pbmerge.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/specs/pbbam.rst: ASCII text data/pbbam-1.6.0+dfsg/docs/specs/pbbam_structure.png: PNG image data, 651 x 470, 8-bit/color RGBA, non-interlaced data/pbbam-1.6.0+dfsg/docs/specs/pbbam_updated_release3_2.rst: ASCII text data/pbbam-1.6.0+dfsg/include/meson.build: ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/Accuracy.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/AlignmentPrinter.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/BaiIndexCache.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/BaiIndexedBamReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/BamFile.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/BamFileMerger.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/BamHeader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/BamReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/BamRecord.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/BamRecordImpl.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/BamRecordTag.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/BamRecordView.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/BamTagCodec.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/BamWriter.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/BgzipFastaWriter.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/BgzipFastqWriter.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/BgzipWriter.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/Cigar.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/CigarOperation.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/ClipType.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/CollectionMetadata.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/Compare.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/CompositeBamReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/CompositeFastaReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/Config.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/DataSet.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/DataSetTypes.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/DataSetXsd.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/Deleters.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/EntireFileQuery.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/FaiIndex.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/FastaCache.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/FastaReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/FastaSequence.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/FastaSequenceQuery.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/FastaWriter.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/FastqReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/FastqSequence.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/FastqWriter.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/FormatUtils.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/FrameEncodingType.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/Frames.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/GenomicInterval.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/GenomicIntervalQuery.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/IFastaWriter.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/IFastqWriter.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/IRecordWriter.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/IndexedBamWriter.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/IndexedFastaReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/IndexedFastqReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/Interval.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/LibraryInfo.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/LocalContextFlags.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/MD5.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/MoveAppend.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/Orientation.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/PbbamVersion.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/PbiBasicTypes.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/PbiBuilder.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/PbiFile.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/PbiFilter.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/PbiFilterQuery.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/PbiFilterTypes.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/PbiIndexedBamReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/PbiRawData.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/Position.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/ProgramInfo.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/PulseBehavior.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/PulseExclusionReason.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/QualityValue.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/QualityValues.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/RecordType.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/RunMetadata.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/SNR.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/SamReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/SamTagCodec.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/SamWriter.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/SequenceInfo.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/Strand.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/StringUtilities.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/Tag.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/TagCollection.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/TextFileReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/TextFileWriter.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/Validator.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/ZmwChunkedFastaReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/ZmwChunkedFastqReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/ZmwGroupQuery.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/ZmwQuery.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/ZmwType.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/ZmwTypeMap.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/bed/BedReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/bed/BedWriter.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/ccs/CCSHeader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/ccs/CCSPbiBuilder.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/ccs/CCSRecord.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/ccs/CCSRecordFormat.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/ccs/CCSRecordReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/ccs/CCSRecordWriter.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/exception/BundleChemistryMappingException.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/exception/InvalidSequencingChemistryException.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/exception/ValidationException.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/internal/Compare.inl: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/internal/CompositeBamReader.inl: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/internal/DataSetBaseTypes.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/internal/DataSetElement.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/internal/DataSetElement.inl: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/internal/PbiBasicTypes.inl: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/internal/PbiFilter.inl: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/internal/PbiFilterTypes.inl: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/internal/QueryBase.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/internal/QueryBase.inl: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/vcf/VcfFile.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/vcf/VcfFormat.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/vcf/VcfHeader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/vcf/VcfHeaderTypes.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/vcf/VcfQuery.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/vcf/VcfReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/vcf/VcfSort.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/vcf/VcfVariant.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/vcf/VcfWriter.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/virtual/VirtualPolymeraseBamRecord.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/virtual/VirtualPolymeraseCompositeReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/virtual/VirtualPolymeraseReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/virtual/VirtualRegion.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/virtual/VirtualRegionType.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/virtual/VirtualRegionTypeMap.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/virtual/VirtualZmwBamRecord.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/virtual/WhitelistedZmwReadStitcher.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/virtual/ZmwReadStitcher.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/virtual/ZmwWhitelistVirtualReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/include/pbbam/ReadGroupInfo.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/meson_options.txt: ASCII text data/pbbam-1.6.0+dfsg/scripts/ci/artifact.sh: Bourne-Again shell script, ASCII text executable data/pbbam-1.6.0+dfsg/scripts/ci/build.sh: Bourne-Again shell script, ASCII text executable data/pbbam-1.6.0+dfsg/scripts/ci/install.sh: Bourne-Again shell script, ASCII text executable data/pbbam-1.6.0+dfsg/scripts/ci/setup.sh: Bourne-Again shell script, ASCII text executable data/pbbam-1.6.0+dfsg/scripts/ci/test.sh: Bourne-Again shell script, ASCII text executable data/pbbam-1.6.0+dfsg/src/AlignmentPrinter.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/Autovalidate.h: C source, ASCII text data/pbbam-1.6.0+dfsg/src/BaiIndexCache.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/BaiIndexedBamReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/BamFile.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/BamFileMerger.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/BamHeader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/BamReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/BamRecord.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/BamRecordImpl.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/BamRecordTags.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/BamRecordTags.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/BamRecordView.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/BamTagCodec.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/BamWriter.cpp: C++ source, UTF-8 Unicode text data/pbbam-1.6.0+dfsg/src/BgzipFastaWriter.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/BgzipFastqWriter.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/BgzipWriter.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/ChemistryTable.cpp: C++ source, UTF-8 Unicode text data/pbbam-1.6.0+dfsg/src/ChemistryTable.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/CollectionMetadata.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/Compare.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/CompositeBamReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/CompositeFastaReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/Config.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/DataSet.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/DataSetBaseTypes.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/DataSetElement.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/DataSetIO.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/DataSetIO.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/DataSetTypes.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/DataSetUtils.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/DataSetXsd.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/EntireFileQuery.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/ErrnoReason.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/ErrnoReason.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/FaiIndex.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/FaiZmwChunker.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/FaiZmwChunker.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/FastaCache.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/FastaReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/FastaSequence.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/FastaSequenceQuery.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/FastaWriter.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/FastqReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/FastqSequence.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/FastqWriter.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/FileProducer.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/FileProducer.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/FileUtils.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/FileUtils.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/FofnReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/FofnReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/FormatUtils.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/GenomicIntervalQuery.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/IFastaWriter.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/IFastqWriter.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/IRecordWriter.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/IndexedBamWriter.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/IndexedFastaReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/IndexedFastqBgzfReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/IndexedFastqBgzfReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/IndexedFastqReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/IndexedFastqReaderImpl.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/IndexedFastqReaderImpl.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/IndexedFastqTextReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/IndexedFastqTextReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/KSeqReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/KSeqReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/LibraryGitHash.h.in: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/LibraryInfo.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/LibraryVersion.h.in: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/MD5.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/MemoryUtils.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/MemoryUtils.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/PbbamGitHash.cpp.in: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/PbbamInternalConfig.h: C source, ASCII text data/pbbam-1.6.0+dfsg/src/PbbamVersion.cpp.in: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/PbiBuilder.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/PbiFile.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/PbiFilter.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/PbiFilterQuery.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/PbiFilterTypes.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/PbiIndexIO.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/PbiIndexIO.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/PbiIndexedBamReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/PbiRawData.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/ProgramInfo.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/Pulse2BaseCache.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/ReadGroupInfo.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/RecordType.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/RunMetadata.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/RunMetadataParser.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/RunMetadataParser.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/SamReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/SamTagCodec.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/SamWriter.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/SequenceInfo.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/SequenceUtils.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/StringUtilities.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/Tag.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/TagCollection.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/TextFileReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/TextFileWriter.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/TimeUtils.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/ValidationErrors.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/ValidationErrors.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/ValidationException.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/Validator.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/Version.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/Version.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/VirtualRegion.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/VirtualRegionTypeMap.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/VirtualStitching.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/VirtualZmwBamRecord.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/VirtualZmwCompositeReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/VirtualZmwCompositeReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/VirtualZmwReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/VirtualZmwReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/WhitelistedZmwReadStitcher.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/XmlReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/XmlReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/XmlWriter.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/XmlWriter.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/ZmwChunkedFastaReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/ZmwChunkedFastqReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/ZmwChunkedFastxBgzfReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/ZmwChunkedFastxBgzfReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/ZmwChunkedFastxReaderImpl.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/ZmwChunkedFastxReaderImpl.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/ZmwChunkedFastxTextReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/ZmwChunkedFastxTextReader.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/ZmwGroupQuery.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/ZmwQuery.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/ZmwReadStitcher.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/ZmwTypeMap.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/bed/BedReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/bed/BedWriter.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/ccs/CCSPbiBuilder.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/ccs/CCSRecord.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/ccs/CCSRecordFormat.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/ccs/CCSRecordReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/ccs/CCSRecordWriter.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/meson.build: ASCII text data/pbbam-1.6.0+dfsg/src/pugixml/pugiconfig.hpp: C source, ASCII text data/pbbam-1.6.0+dfsg/src/pugixml/pugixml.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/pugixml/pugixml.hpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/vcf/VcfFile.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/vcf/VcfFormat.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/vcf/VcfFormatException.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/vcf/VcfHeader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/vcf/VcfHeaderTypes.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/vcf/VcfQuery.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/vcf/VcfReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/vcf/VcfSort.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/vcf/VcfVariant.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/src/vcf/VcfWriter.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/subprojects/gtest.wrap: ASCII text data/pbbam-1.6.0+dfsg/subprojects/htslib.wrap: ASCII text data/pbbam-1.6.0+dfsg/subprojects/pbcopper.wrap: ASCII text data/pbbam-1.6.0+dfsg/subprojects/zlib.wrap: ASCII text data/pbbam-1.6.0+dfsg/tests/data/23.ccs.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 332 data/pbbam-1.6.0+dfsg/tests/data/23.ccs.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 77 data/pbbam-1.6.0+dfsg/tests/data/aligned.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 321 data/pbbam-1.6.0+dfsg/tests/data/aligned.bam.bai: SAMtools BAI (BAM indexing format), with 1 reference sequences data/pbbam-1.6.0+dfsg/tests/data/aligned.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 139 data/pbbam-1.6.0+dfsg/tests/data/aligned.sam: Sequence Alignment/Map (SAM), with header version 1.3.1 data/pbbam-1.6.0+dfsg/tests/data/aligned2.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 515 data/pbbam-1.6.0+dfsg/tests/data/aligned2.bam.bai: SAMtools BAI (BAM indexing format), with 1 reference sequences data/pbbam-1.6.0+dfsg/tests/data/aligned2.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 337 data/pbbam-1.6.0+dfsg/tests/data/barcoded_movie_filter/barcoded.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 995 data/pbbam-1.6.0+dfsg/tests/data/barcoded_movie_filter/barcoded.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 84 data/pbbam-1.6.0+dfsg/tests/data/barcoded_movie_filter/barcoded.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/barcoded_read_groups.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 300 data/pbbam-1.6.0+dfsg/tests/data/barcoded_read_groups.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 97 data/pbbam-1.6.0+dfsg/tests/data/bed/test.bed: ASCII text data/pbbam-1.6.0+dfsg/tests/data/bed/test.bed.gz: gzip compressed data, was "test.bed", last modified: Sun Jun 16 03:09:11 2019, from Unix, original size modulo 2^32 225 data/pbbam-1.6.0+dfsg/tests/data/ccs-kinetics-bystrandify/ccs-kinetics-bystrandify-mock-input.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 247 data/pbbam-1.6.0+dfsg/tests/data/ccs-kinetics-bystrandify/ccs-kinetics-bystrandify-mock-input.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 82 data/pbbam-1.6.0+dfsg/tests/data/chemistry.xml: XML 1.0 document, ASCII text data/pbbam-1.6.0+dfsg/tests/data/chimera_minimal.fasta: ASCII text data/pbbam-1.6.0+dfsg/tests/data/chunking/chunking.subreadset.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.1.subreads.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 241 data/pbbam-1.6.0+dfsg/tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.1.subreads.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 4264 data/pbbam-1.6.0+dfsg/tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.2.subreads.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 241 data/pbbam-1.6.0+dfsg/tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.2.subreads.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 4029 data/pbbam-1.6.0+dfsg/tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.3.subreads.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 241 data/pbbam-1.6.0+dfsg/tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.3.subreads.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 3792 data/pbbam-1.6.0+dfsg/tests/data/clip_to_query.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 267 data/pbbam-1.6.0+dfsg/tests/data/dataset/ali1.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/dataset/ali2.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/dataset/ali3.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/dataset/ali4.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/dataset/bam_mapping.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 497 data/pbbam-1.6.0+dfsg/tests/data/dataset/bam_mapping.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 2440 data/pbbam-1.6.0+dfsg/tests/data/dataset/bam_mapping_1.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 497 data/pbbam-1.6.0+dfsg/tests/data/dataset/bam_mapping_1.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 2419 data/pbbam-1.6.0+dfsg/tests/data/dataset/bam_mapping_2.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 497 data/pbbam-1.6.0+dfsg/tests/data/dataset/bam_mapping_2.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 2406 data/pbbam-1.6.0+dfsg/tests/data/dataset/bam_mapping_new.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 497 data/pbbam-1.6.0+dfsg/tests/data/dataset/bam_mapping_new.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 333 data/pbbam-1.6.0+dfsg/tests/data/dataset/bam_mapping_staggered.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/dataset/barcode.dataset.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/dataset/biosample.subreadset.xml: XML 1.0 document, UTF-8 Unicode text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/dataset/ccsread.dataset.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/dataset/lambda_contigs.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/dataset/malformed.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/dataset/pbalchemy10kbp.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/dataset/qname_filter.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 203 data/pbbam-1.6.0+dfsg/tests/data/dataset/qname_filter.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 85 data/pbbam-1.6.0+dfsg/tests/data/dataset/reference.dataset.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/dataset/subread_dataset1.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/dataset/subread_dataset2.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/dataset/subread_dataset3.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/dataset/transformed_rs_subread_dataset.xml: XML 1.0 document, ASCII text data/pbbam-1.6.0+dfsg/tests/data/empty.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 321 data/pbbam-1.6.0+dfsg/tests/data/empty.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 38 data/pbbam-1.6.0+dfsg/tests/data/fastx/chunking.fa: ASCII text data/pbbam-1.6.0+dfsg/tests/data/fastx/chunking.fa.fai: ASCII text data/pbbam-1.6.0+dfsg/tests/data/fastx/chunking.fq: ASCII text data/pbbam-1.6.0+dfsg/tests/data/fastx/chunking.fq.fai: ASCII text data/pbbam-1.6.0+dfsg/tests/data/fastx/fasta_cache_check.fa: ASCII text data/pbbam-1.6.0+dfsg/tests/data/fastx/simple-bgzf.fa.gz: Blocked GNU Zip Format (BGZF; gzip compatible), block length 75 data/pbbam-1.6.0+dfsg/tests/data/fastx/simple-bgzf.fa.gz.fai: ASCII text data/pbbam-1.6.0+dfsg/tests/data/fastx/simple-bgzf.fa.gz.gzi: data data/pbbam-1.6.0+dfsg/tests/data/fastx/simple-bgzf.fq.gz: Blocked GNU Zip Format (BGZF; gzip compatible), block length 295 data/pbbam-1.6.0+dfsg/tests/data/fastx/simple-bgzf.fq.gz.fai: ASCII text data/pbbam-1.6.0+dfsg/tests/data/fastx/simple-bgzf.fq.gz.gzi: data data/pbbam-1.6.0+dfsg/tests/data/fastx/simple-gzip.fa.gz: gzip compressed data, was "simple-text.fa", last modified: Tue May 14 15:54:16 2019, from Unix, original size modulo 2^32 560 data/pbbam-1.6.0+dfsg/tests/data/fastx/simple-gzip.fq.gz: gzip compressed data, was "simple.fq", last modified: Tue May 14 15:54:16 2019, from Unix, original size modulo 2^32 1088 data/pbbam-1.6.0+dfsg/tests/data/fastx/simple.fa: ASCII text data/pbbam-1.6.0+dfsg/tests/data/fastx/simple.fa.fai: ASCII text data/pbbam-1.6.0+dfsg/tests/data/fastx/simple.fq: ASCII text data/pbbam-1.6.0+dfsg/tests/data/fastx/simple.fq.fai: ASCII text data/pbbam-1.6.0+dfsg/tests/data/fastx/windows_formatted.fasta: ASCII text, with CRLF line terminators data/pbbam-1.6.0+dfsg/tests/data/fastx/windows_formatted.fastq: ASCII text, with CRLF line terminators data/pbbam-1.6.0+dfsg/tests/data/group/group.fofn.in: ASCII text data/pbbam-1.6.0+dfsg/tests/data/group/test1.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 542 data/pbbam-1.6.0+dfsg/tests/data/group/test1.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 85 data/pbbam-1.6.0+dfsg/tests/data/group/test2.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 543 data/pbbam-1.6.0+dfsg/tests/data/group/test2.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 170 data/pbbam-1.6.0+dfsg/tests/data/group/test3.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 587 data/pbbam-1.6.0+dfsg/tests/data/lambdaNEB.fa: ASCII text data/pbbam-1.6.0+dfsg/tests/data/lambdaNEB.fa.fai: ASCII text data/pbbam-1.6.0+dfsg/tests/data/long-cigar-1.7.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 210 data/pbbam-1.6.0+dfsg/tests/data/long_reads.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 472 data/pbbam-1.6.0+dfsg/tests/data/merge.fofn: ASCII text data/pbbam-1.6.0+dfsg/tests/data/pbbamify/input-aligned-1.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 107 data/pbbam-1.6.0+dfsg/tests/data/pbbamify/input-aligned-2.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 114 data/pbbam-1.6.0+dfsg/tests/data/pbbamify/input-aligned-3.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 107 data/pbbam-1.6.0+dfsg/tests/data/pbbamify/input-aligned-all.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 114 data/pbbam-1.6.0+dfsg/tests/data/pbbamify/synthetic-ref-1.fa: ASCII text data/pbbam-1.6.0+dfsg/tests/data/pbbamify/synthetic-ref-1.fa.fai: ASCII text data/pbbam-1.6.0+dfsg/tests/data/pbbamify/synthetic_movie_1.subreads.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 414 data/pbbam-1.6.0+dfsg/tests/data/pbbamify/synthetic_movie_1.subreads.bam.bai: SAMtools BAI (BAM indexing format) data/pbbam-1.6.0+dfsg/tests/data/pbbamify/synthetic_movie_1.subreads.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 83 data/pbbam-1.6.0+dfsg/tests/data/pbbamify/synthetic_movie_2.subreads.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 413 data/pbbam-1.6.0+dfsg/tests/data/pbbamify/synthetic_movie_2.subreads.bam.bai: SAMtools BAI (BAM indexing format) data/pbbam-1.6.0+dfsg/tests/data/pbbamify/synthetic_movie_2.subreads.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 77 data/pbbam-1.6.0+dfsg/tests/data/pbbamify/synthetic_movie_3.subreads.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 287 data/pbbam-1.6.0+dfsg/tests/data/pbbamify/synthetic_movie_3.subreads.bam.bai: SAMtools BAI (BAM indexing format) data/pbbam-1.6.0+dfsg/tests/data/pbbamify/synthetic_movie_3.subreads.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 61 data/pbbam-1.6.0+dfsg/tests/data/pbbamify/synthetic_movie_all.subreadset.xml.in: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/phi29.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 328 data/pbbam-1.6.0+dfsg/tests/data/phi29.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 1365 data/pbbam-1.6.0+dfsg/tests/data/polymerase/consolidate.subread.dataset.xml: XML 1.0 document, ASCII text data/pbbam-1.6.0+dfsg/tests/data/polymerase/filtered_resources.subread.dataset.xml: XML 1.0 document, ASCII text data/pbbam-1.6.0+dfsg/tests/data/polymerase/internal.hqregions.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 377 data/pbbam-1.6.0+dfsg/tests/data/polymerase/internal.hqregions.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 66 data/pbbam-1.6.0+dfsg/tests/data/polymerase/internal.lqregions.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 376 data/pbbam-1.6.0+dfsg/tests/data/polymerase/internal.lqregions.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 81 data/pbbam-1.6.0+dfsg/tests/data/polymerase/internal.polymerase.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 378 data/pbbam-1.6.0+dfsg/tests/data/polymerase/internal.polymerase.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 87 data/pbbam-1.6.0+dfsg/tests/data/polymerase/internal.scraps.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 376 data/pbbam-1.6.0+dfsg/tests/data/polymerase/internal.scraps.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 418 data/pbbam-1.6.0+dfsg/tests/data/polymerase/internal.subreads.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 376 data/pbbam-1.6.0+dfsg/tests/data/polymerase/internal.subreads.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 252 data/pbbam-1.6.0+dfsg/tests/data/polymerase/multiple_resources.subread.dataset.xml: XML 1.0 document, ASCII text data/pbbam-1.6.0+dfsg/tests/data/polymerase/production.polymerase.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 309 data/pbbam-1.6.0+dfsg/tests/data/polymerase/production.scraps.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 303 data/pbbam-1.6.0+dfsg/tests/data/polymerase/production.scraps.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 255 data/pbbam-1.6.0+dfsg/tests/data/polymerase/production.subreads.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 302 data/pbbam-1.6.0+dfsg/tests/data/polymerase/production.subreads.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 159 data/pbbam-1.6.0+dfsg/tests/data/polymerase/production_hq.hqregion.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 305 data/pbbam-1.6.0+dfsg/tests/data/polymerase/production_hq.hqregion.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 62 data/pbbam-1.6.0+dfsg/tests/data/polymerase/production_hq.scraps.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 306 data/pbbam-1.6.0+dfsg/tests/data/polymerase/production_hq.scraps.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 75 data/pbbam-1.6.0+dfsg/tests/data/polymerase/qnameFiltered.subreads.dataset.xml: XML 1.0 document, ASCII text data/pbbam-1.6.0+dfsg/tests/data/polymerase/qname_whitelist.txt: ASCII text data/pbbam-1.6.0+dfsg/tests/data/polymerase/scrapless.scraps.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 407 data/pbbam-1.6.0+dfsg/tests/data/polymerase/scrapless.scraps.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 36 data/pbbam-1.6.0+dfsg/tests/data/polymerase/scrapless.subreads.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 403 data/pbbam-1.6.0+dfsg/tests/data/polymerase/scrapless.subreads.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 85 data/pbbam-1.6.0+dfsg/tests/data/referenceset.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/refskip.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 817 data/pbbam-1.6.0+dfsg/tests/data/relative/a/test.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 290 data/pbbam-1.6.0+dfsg/tests/data/relative/b/test1.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 290 data/pbbam-1.6.0+dfsg/tests/data/relative/b/test2.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 290 data/pbbam-1.6.0+dfsg/tests/data/relative/relative.fofn: ASCII text data/pbbam-1.6.0+dfsg/tests/data/relative/relative.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/relative/relative2.fofn: ASCII text data/pbbam-1.6.0+dfsg/tests/data/run_metadata/barcodes.subreadset.xml: XML 1.0 document, UTF-8 Unicode text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/run_metadata/collection_metadata.xml: UTF-8 Unicode text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/run_metadata/id.metadata.xml: UTF-8 Unicode text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/run_metadata/id.run.metadata.xml: UTF-8 Unicode text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/run_metadata/id.subreadset.xml: UTF-8 Unicode text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/segfault.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 238 data/pbbam-1.6.0+dfsg/tests/data/softclip_deletions.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 759 data/pbbam-1.6.0+dfsg/tests/data/stitching/test_qstart.scraps.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 474 data/pbbam-1.6.0+dfsg/tests/data/stitching/test_qstart.scraps.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 89 data/pbbam-1.6.0+dfsg/tests/data/stitching/test_qstart.subreads.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 474 data/pbbam-1.6.0+dfsg/tests/data/stitching/test_qstart.subreads.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 102 data/pbbam-1.6.0+dfsg/tests/data/test_GenomicIntervals/adjacent_intervals.alignmentset.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/test_GenomicIntervals/contig_name_only.alignmentset.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/test_GenomicIntervals/disjoint_intervals.alignmentset.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/test_GenomicIntervals/empty.alignmentset.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/test_GenomicIntervals/invalid_missing_rname.alignmentset.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/test_GenomicIntervals/invalid_rname_operator.alignmentset.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/test_GenomicIntervals/invalid_tstart_operator.alignmentset.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/test_GenomicIntervals/no_filter.alignmentset.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/test_GenomicIntervals/out_of_range.alignmentset.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/test_GenomicIntervals/single_interval.alignmentset.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/test_GenomicIntervals/single_interval_end_gte.alignmentset.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/test_GenomicIntervals/single_interval_start_lte.alignmentset.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/test_GenomicIntervals/test_contigs.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 253 data/pbbam-1.6.0+dfsg/tests/data/test_GenomicIntervals/test_contigs.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 50 data/pbbam-1.6.0+dfsg/tests/data/test_GenomicIntervals/test_contigs.fasta: ASCII text data/pbbam-1.6.0+dfsg/tests/data/test_GenomicIntervals/two_contigs.alignmentset.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/test_GenomicIntervals/whole_contig.alignmentset.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/test_group_query/group.fofn.in: ASCII text data/pbbam-1.6.0+dfsg/tests/data/test_group_query/test1.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 542 data/pbbam-1.6.0+dfsg/tests/data/test_group_query/test2.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 543 data/pbbam-1.6.0+dfsg/tests/data/test_group_query/test2.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 168 data/pbbam-1.6.0+dfsg/tests/data/test_group_query/test3.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 587 data/pbbam-1.6.0+dfsg/tests/data/transcript.subreads.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 182 data/pbbam-1.6.0+dfsg/tests/data/transcript.subreads.bam.pbi: Blocked GNU Zip Format (BGZF; gzip compatible), block length 78 data/pbbam-1.6.0+dfsg/tests/data/transcriptset.xml: XML 1.0 document, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/unmap1.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 242 data/pbbam-1.6.0+dfsg/tests/data/unmap1.bam.bai: SAMtools BAI (BAM indexing format), with 7 reference sequences data/pbbam-1.6.0+dfsg/tests/data/unmap2.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 272 data/pbbam-1.6.0+dfsg/tests/data/unmap2.bam.bai: SAMtools BAI (BAM indexing format), with 7 reference sequences data/pbbam-1.6.0+dfsg/tests/data/vcf/empty.vcf: empty data/pbbam-1.6.0+dfsg/tests/data/vcf/structural_variants.vcf: Variant Call Format (VCF) version 4.2, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/data/vcf/unsorted.vcf: Variant Call Format (VCF) version 4.2, ASCII text data/pbbam-1.6.0+dfsg/tests/data/zero_bytes.bam: empty data/pbbam-1.6.0+dfsg/tests/data/zero_bytes.sam: empty data/pbbam-1.6.0+dfsg/tests/data/zmws/m64004_200204_230803.zmws.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 472 data/pbbam-1.6.0+dfsg/tests/scripts/generate_data.py: Python script, ASCII text executable data/pbbam-1.6.0+dfsg/tests/src/FastxTests.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/PbbamTestData.h.in: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/cram/bam2sam.t.in: ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/src/cram/ccs-kinetics-bystrandify.t: ASCII text data/pbbam-1.6.0+dfsg/tests/src/cram/pbbamify.t.in: ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/src/cram/pbindexdump_cpp.t.in: ASCII text data/pbbam-1.6.0+dfsg/tests/src/cram/pbindexdump_json.t.in: ASCII text data/pbbam-1.6.0+dfsg/tests/src/cram/zero_byte_check.t: ASCII text data/pbbam-1.6.0+dfsg/tests/src/cram/pbmerge_pacbio_ordering.t.in: ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/src/cram/pbmerge_mixed_ordering.t.in: ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/src/cram/pbmerge_aligned_ordering.t.in: ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/src/cram/pbmerge_fofn.t.in: ASCII text, with very long lines data/pbbam-1.6.0+dfsg/tests/src/cram/pbmerge_dataset.t.in: ASCII text data/pbbam-1.6.0+dfsg/tests/src/meson.build: ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_AlignmentPrinter.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_BamFile.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_BamHeader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_BamReader.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_BamRecord.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_BamRecordClipping.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_BamRecordImplCore.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_BamRecordImplTags.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_BamRecordImplVariableData.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_BamRecordMapping.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_BamWriter.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_BedReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_BedWriter.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_BgzipFastaWriter.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_BgzipFastqWriter.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_BgzipWriter.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_CCSPbiBuilder.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_CCSRecord.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_CCSRecordIO.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_CollectionMetadata.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_Compare.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_CompositeBamReaders.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_DataSetCore.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_DataSetGenomicIntervals.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_DataSetIO.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_DataSetQuery.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_DataSetXsd.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_EndToEnd.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_EntireFileQuery.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_FaiIndex.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_FaiZmwChunker.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_FastaCache.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_FastaReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_FastaSequence.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_FastaSequenceQuery.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_FastaWriter.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_FastqReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_FastqSequence.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_FastqWriter.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_FileUtils.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_GenomicIntervalQuery.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_IndexedBamWriter.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_IndexedFastaReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_IndexedFastqReader.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_LongCigar.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_PacBioIndex.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_PbiFilter.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_PbiFilterQuery.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_Pulse2BaseCache.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_QualityValues.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_RunMetadata.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_SamIO.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_SequenceUtils.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_StringUtils.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_Tags.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_TextFileReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_TextFileWriter.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_TimeUtils.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_Validator.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_VcfFile.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_VcfFormat.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_VcfHeader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_VcfQuery.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_VcfReader.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_VcfSort.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_VcfVariant.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_VcfWriter.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_Version.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_WhitelistedZmwReadStitcher.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_ZmwChunkedFastxReader.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_ZmwQuery.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_ZmwReadStitcher.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tests/src/zero_byte_check/meson.build: ASCII text data/pbbam-1.6.0+dfsg/tests/src/test_ReadGroupInfo.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/zero_byte_check/main.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tests/zero_byte_check/meson.build: ASCII text data/pbbam-1.6.0+dfsg/tests/meson.build: ASCII text data/pbbam-1.6.0+dfsg/tools/bam2sam/src/Bam2SamSettings.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/bam2sam/src/Bam2SamSettings.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/bam2sam/src/Bam2SamVersion.h.in: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/bam2sam/src/Bam2SamWorkflow.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/bam2sam/src/Bam2SamWorkflow.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/bam2sam/src/main.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tools/ccs-kinetics-bystrandify/src/CcsKineticsBystrandifySettings.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/ccs-kinetics-bystrandify/src/CcsKineticsBystrandifySettings.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/ccs-kinetics-bystrandify/src/CcsKineticsBystrandifyVersion.h.in: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/ccs-kinetics-bystrandify/src/CcsKineticsBystrandifyWorkflow.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/ccs-kinetics-bystrandify/src/CcsKineticsBystrandifyWorkflow.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/ccs-kinetics-bystrandify/src/main.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tools/check-eof: Bourne-Again shell script, ASCII text executable data/pbbam-1.6.0+dfsg/tools/check-formatting: Bourne-Again shell script, ASCII text executable data/pbbam-1.6.0+dfsg/tools/format-all: Bourne-Again shell script, ASCII text executable data/pbbam-1.6.0+dfsg/tools/git-clang-format: Python script, ASCII text executable data/pbbam-1.6.0+dfsg/tools/meson.build: ASCII text data/pbbam-1.6.0+dfsg/tools/pbbamify/src/PbBamifySettings.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbbamify/src/PbBamifySettings.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbbamify/src/PbBamifyVersion.h.in: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbbamify/src/PbBamifyWorkflow.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbbamify/src/PbBamifyWorkflow.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbbamify/src/QueryLookup.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbbamify/src/QueryLookup.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbbamify/src/main.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbindex/src/PbIndexSettings.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbindex/src/PbIndexSettings.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbindex/src/PbIndexVersion.h.in: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbindex/src/PbIndexWorkflow.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbindex/src/PbIndexWorkflow.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbindex/src/main.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbindexdump/src/CppFormatter.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbindexdump/src/CppFormatter.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbindexdump/src/JsonFormatter.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbindexdump/src/JsonFormatter.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbindexdump/src/PbIndexDumpSettings.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbindexdump/src/PbIndexDumpSettings.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbindexdump/src/PbIndexDumpVersion.h.in: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbindexdump/src/PbIndexDumpWorkflow.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbindexdump/src/PbIndexDumpWorkflow.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbindexdump/src/main.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbmerge/src/PbMergeSettings.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbmerge/src/PbMergeSettings.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbmerge/src/PbMergeVersion.h.in: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbmerge/src/PbMergeWorkflow.cpp: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbmerge/src/PbMergeWorkflow.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/tools/pbmerge/src/main.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/debian/README.source: ASCII text data/pbbam-1.6.0+dfsg/debian/TODO: ASCII text data/pbbam-1.6.0+dfsg/debian/changelog: UTF-8 Unicode text data/pbbam-1.6.0+dfsg/debian/control: ASCII text data/pbbam-1.6.0+dfsg/debian/copyright: ASCII text data/pbbam-1.6.0+dfsg/debian/patches/boost_optional.patch: unified diff output, UTF-8 Unicode text data/pbbam-1.6.0+dfsg/debian/patches/python3.patch: unified diff output, ASCII text data/pbbam-1.6.0+dfsg/debian/patches/results_with_latest_samtools.patch: unified diff output, ASCII text, with very long lines data/pbbam-1.6.0+dfsg/debian/patches/series: ASCII text data/pbbam-1.6.0+dfsg/debian/patches/use_debian_packaged_python3-cram.patch: unified diff output, ASCII text data/pbbam-1.6.0+dfsg/debian/pbbamtools.install: ASCII text data/pbbam-1.6.0+dfsg/debian/rules: a /usr/bin/make -f script, ASCII text executable data/pbbam-1.6.0+dfsg/debian/salsa-ci.yml: ASCII text data/pbbam-1.6.0+dfsg/debian/source/format: ASCII text data/pbbam-1.6.0+dfsg/debian/tests/control: ASCII text data/pbbam-1.6.0+dfsg/debian/upstream/metadata: ASCII text data/pbbam-1.6.0+dfsg/debian/watch: ASCII text data/pbbam-1.6.0+dfsg/.pc/.version: ASCII text data/pbbam-1.6.0+dfsg/.pc/.quilt_patches: ASCII text data/pbbam-1.6.0+dfsg/.pc/.quilt_series: ASCII text data/pbbam-1.6.0+dfsg/.pc/applied-patches: ASCII text data/pbbam-1.6.0+dfsg/.pc/use_debian_packaged_python3-cram.patch/tests/meson.build: ASCII text data/pbbam-1.6.0+dfsg/.pc/python3.patch/meson.build: ASCII text data/pbbam-1.6.0+dfsg/.pc/python3.patch/tests/scripts/generate_data.py: Python script, ASCII text executable data/pbbam-1.6.0+dfsg/.pc/results_with_latest_samtools.patch/tests/src/cram/pbmerge_pacbio_ordering.t.in: ASCII text, with very long lines data/pbbam-1.6.0+dfsg/.pc/results_with_latest_samtools.patch/tests/src/cram/pbmerge_mixed_ordering.t.in: ASCII text, with very long lines data/pbbam-1.6.0+dfsg/.pc/results_with_latest_samtools.patch/tests/src/cram/pbmerge_aligned_ordering.t.in: ASCII text, with very long lines data/pbbam-1.6.0+dfsg/.pc/results_with_latest_samtools.patch/tests/src/cram/pbmerge_fofn.t.in: ASCII text, with very long lines data/pbbam-1.6.0+dfsg/.pc/results_with_latest_samtools.patch/tests/src/cram/pbmerge_dataset.t.in: ASCII text data/pbbam-1.6.0+dfsg/.pc/boost_optional.patch/tests/src/test_ReadGroupInfo.cpp: C source, ASCII text data/pbbam-1.6.0+dfsg/.pc/boost_optional.patch/include/pbbam/ReadGroupInfo.h: C++ source, ASCII text data/pbbam-1.6.0+dfsg/meson.build: ASCII text