data/pilon-1.23+dfsg/.classpath:                                                       ASCII text
data/pilon-1.23+dfsg/.gitignore:                                                       ASCII text
data/pilon-1.23+dfsg/.project:                                                         ASCII text
data/pilon-1.23+dfsg/.settings/org.scala-ide.sdt.core.prefs:                           ASCII text
data/pilon-1.23+dfsg/COPYRIGHT:                                                        ASCII text
data/pilon-1.23+dfsg/LICENSE:                                                          ASCII text
data/pilon-1.23+dfsg/README.md:                                                        ASCII text
data/pilon-1.23+dfsg/build.sbt:                                                        ASCII text
data/pilon-1.23+dfsg/build.sh:                                                         POSIX shell script, ASCII text executable
data/pilon-1.23+dfsg/project/plugins.sbt:                                              ASCII text
data/pilon-1.23+dfsg/src/main/scala/org/broadinstitute/pilon/Assembler.scala:          ASCII text
data/pilon-1.23+dfsg/src/main/scala/org/broadinstitute/pilon/BamFile.scala:            C++ source, ASCII text
data/pilon-1.23+dfsg/src/main/scala/org/broadinstitute/pilon/BaseSum.scala:            C++ source, ASCII text
data/pilon-1.23+dfsg/src/main/scala/org/broadinstitute/pilon/Bases.scala:              ASCII text
data/pilon-1.23+dfsg/src/main/scala/org/broadinstitute/pilon/GapFiller.scala:          ASCII text
data/pilon-1.23+dfsg/src/main/scala/org/broadinstitute/pilon/GenomeFile.scala:         ASCII text
data/pilon-1.23+dfsg/src/main/scala/org/broadinstitute/pilon/GenomeRegion.scala:       ASCII text
data/pilon-1.23+dfsg/src/main/scala/org/broadinstitute/pilon/NormalDistribution.scala: ASCII text
data/pilon-1.23+dfsg/src/main/scala/org/broadinstitute/pilon/PileUp.scala:             C++ source, ASCII text
data/pilon-1.23+dfsg/src/main/scala/org/broadinstitute/pilon/PileUpRegion.scala:       ASCII text
data/pilon-1.23+dfsg/src/main/scala/org/broadinstitute/pilon/Pilon.scala:              C source, ASCII text
data/pilon-1.23+dfsg/src/main/scala/org/broadinstitute/pilon/Region.scala:             ASCII text
data/pilon-1.23+dfsg/src/main/scala/org/broadinstitute/pilon/Scaffold.scala:           ASCII text
data/pilon-1.23+dfsg/src/main/scala/org/broadinstitute/pilon/Tracks.scala:             ASCII text
data/pilon-1.23+dfsg/src/main/scala/org/broadinstitute/pilon/Utils.scala:              ASCII text
data/pilon-1.23+dfsg/src/main/scala/org/broadinstitute/pilon/Vcf.scala:                Variant Call Format (VCF) version 4.1"), ASCII text
data/pilon-1.23+dfsg/src/main/scala/org/broadinstitute/pilon/Version.scala:            ASCII text
data/pilon-1.23+dfsg/debian/README.test:                                               UTF-8 Unicode text
data/pilon-1.23+dfsg/debian/bin/pilon:                                                 POSIX shell script, ASCII text executable
data/pilon-1.23+dfsg/debian/changelog:                                                 UTF-8 Unicode text
data/pilon-1.23+dfsg/debian/control:                                                   ASCII text
data/pilon-1.23+dfsg/debian/copyright:                                                 ASCII text
data/pilon-1.23+dfsg/debian/createmanpages:                                            POSIX shell script, ASCII text executable
data/pilon-1.23+dfsg/debian/docs:                                                      ASCII text
data/pilon-1.23+dfsg/debian/examples:                                                  ASCII text, with no line terminators
data/pilon-1.23+dfsg/debian/install:                                                   ASCII text
data/pilon-1.23+dfsg/debian/manifest:                                                  ASCII text
data/pilon-1.23+dfsg/debian/manpages:                                                  ASCII text
data/pilon-1.23+dfsg/debian/pilon.1:                                                   troff or preprocessor input, ASCII text
data/pilon-1.23+dfsg/debian/rules:                                                     a /usr/bin/make -f script, ASCII text executable
data/pilon-1.23+dfsg/debian/salsa-ci.yml:                                              ASCII text
data/pilon-1.23+dfsg/debian/source/format:                                             ASCII text
data/pilon-1.23+dfsg/debian/source/include-binaries:                                   ASCII text
data/pilon-1.23+dfsg/debian/tests/control:                                             ASCII text
data/pilon-1.23+dfsg/debian/tests/data/NC_045512.2.fasta:                              ASCII text
data/pilon-1.23+dfsg/debian/tests/data/README.test_data:                               ASCII text
data/pilon-1.23+dfsg/debian/tests/data/SRR11728627.sorted.bam:                         Blocked GNU Zip Format (BGZF; gzip compatible), block length 222
data/pilon-1.23+dfsg/debian/tests/data/SRR11728627.sorted.bam.bai:                     SAMtools BAI (BAM indexing format), with 1 reference sequences
data/pilon-1.23+dfsg/debian/tests/data/ref/pilon.fasta:                                ASCII text
data/pilon-1.23+dfsg/debian/tests/run-unit-test:                                       Bourne-Again shell script, ASCII text executable
data/pilon-1.23+dfsg/debian/upstream/metadata:                                         ASCII text
data/pilon-1.23+dfsg/debian/watch:                                                     ASCII text
data/pilon-1.23+dfsg/.pc/.version:                                                     ASCII text
data/pilon-1.23+dfsg/.pc/.quilt_patches:                                               ASCII text
data/pilon-1.23+dfsg/.pc/.quilt_series:                                                ASCII text
data/pilon-1.23+dfsg/.pc/applied-patches:                                              empty