data/plasmidid-1.6.3+dfsg/CHANGELOG.md: ASCII text data/plasmidid-1.6.3+dfsg/Dockerfile: ASCII text data/plasmidid-1.6.3+dfsg/LICENSE: ASCII text data/plasmidid-1.6.3+dfsg/Singularity: ASCII text data/plasmidid-1.6.3+dfsg/TEST_DATA/KPN_TEST_R1.fastq.gz: gzip compressed data, was "KPN_TEST_R1_4.fastq", last modified: Mon Jul 2 10:09:10 2018, from Unix, original size modulo 2^32 176065050 data/plasmidid-1.6.3+dfsg/TEST_DATA/KPN_TEST_R2.fastq.gz: gzip compressed data, was "KPN_TEST_R2_4.fastq", last modified: Mon Jul 2 10:09:55 2018, from Unix, original size modulo 2^32 176065050 data/plasmidid-1.6.3+dfsg/TEST_DATA/contigs_KPN_TEST.fasta: ASCII text data/plasmidid-1.6.3+dfsg/TEST_DATA/plasmids_TEST_database.fasta: ASCII text data/plasmidid-1.6.3+dfsg/TEST_DATA/test.sh: Bourne-Again shell script, UTF-8 Unicode text executable data/plasmidid-1.6.3+dfsg/annotation_config_file.txt: ASCII text data/plasmidid-1.6.3+dfsg/bin/adapt_filter_coverage.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/bin/blast_align.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/bin/blast_to_bed.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/bin/blast_to_complete.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/bin/blast_to_link.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/bin/bowtie_mapper.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/bin/build_karyotype.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/bin/calculate_seqlen.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/bin/cdhit_cluster.sh: Bourne-Again shell script, UTF-8 Unicode text executable data/plasmidid-1.6.3+dfsg/bin/check_dependencies.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/bin/check_mandatory_files.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/bin/coordinate_adapter.sh: Bourne-Again shell script, ASCII text executable, with very long lines data/plasmidid-1.6.3+dfsg/bin/draw_circos_images.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/bin/filter_fasta.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/bin/get_coverage.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/bin/gff_to_bed.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/bin/mash_screener.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/bin/ncbi_database_fetcher.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/bin/process_cluster_output.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/bin/prokka_annotation.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/bin/quality_trim.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/bin/rename_from_fasta.sh: Bourne-Again shell script, ASCII text executable, with very long lines data/plasmidid-1.6.3+dfsg/bin/sam_to_bam.sh: Bourne-Again shell script, UTF-8 Unicode text executable data/plasmidid-1.6.3+dfsg/bin/spades_assembly.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/bin/summary_table.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/bin/download_plasmid_database.py: Python script, ASCII text executable data/plasmidid-1.6.3+dfsg/bin/mashclust.py: Python script, ASCII text executable data/plasmidid-1.6.3+dfsg/bin/summary_report_pid.py: Python script, ASCII text executable data/plasmidid-1.6.3+dfsg/config_files/OR.conf: ASCII text data/plasmidid-1.6.3+dfsg/config_files/circos_individual_1_3_0.conf: ASCII text data/plasmidid-1.6.3+dfsg/config_files/circos_individual_1_3_3.conf: ASCII text data/plasmidid-1.6.3+dfsg/config_files/circos_summary_1_3_0.conf: Objective-C source, ASCII text data/plasmidid-1.6.3+dfsg/config_files/circos_summary_1_3_3.conf: Objective-C source, ASCII text data/plasmidid-1.6.3+dfsg/config_files/simple.conf: ASCII text data/plasmidid-1.6.3+dfsg/databases/ARGannot.pID.fasta: ASCII text data/plasmidid-1.6.3+dfsg/databases/card.fasta: ASCII text data/plasmidid-1.6.3+dfsg/databases/plasmidFinder_01_26_2018.fsa: ASCII text, with very long lines, with CRLF line terminators data/plasmidid-1.6.3+dfsg/documents/Istall_dependencies.md: ASCII text data/plasmidid-1.6.3+dfsg/img/01_plasmid_track.png: PNG image data, 849 x 851, 8-bit/color RGBA, non-interlaced data/plasmidid-1.6.3+dfsg/img/02_mapping_track.png: PNG image data, 860 x 851, 8-bit/color RGBA, non-interlaced data/plasmidid-1.6.3+dfsg/img/03_annotation_track.png: PNG image data, 1701 x 851, 8-bit/color RGBA, non-interlaced data/plasmidid-1.6.3+dfsg/img/04_contig_track.png: PNG image data, 1701 x 851, 8-bit/color RGBA, non-interlaced data/plasmidid-1.6.3+dfsg/img/05_01_complete_contig_track.png: PNG image data, 1701 x 851, 8-bit/color RGBA, non-interlaced data/plasmidid-1.6.3+dfsg/img/05_complete_contig_track.png: PNG image data, 866 x 851, 8-bit/color RGBA, non-interlaced data/plasmidid-1.6.3+dfsg/img/Alignment.png: PNG image data, 960 x 540, 8-bit/color RGBA, non-interlaced data/plasmidid-1.6.3+dfsg/img/Annotation.png: PNG image data, 960 x 540, 8-bit/color RGBA, non-interlaced data/plasmidid-1.6.3+dfsg/img/Clustering_2.png: PNG image data, 960 x 540, 8-bit/color RGBA, non-interlaced data/plasmidid-1.6.3+dfsg/img/Mapping.png: PNG image data, 1010 x 562, 8-bit/color RGBA, non-interlaced data/plasmidid-1.6.3+dfsg/img/Overlap_examples.png: PNG image data, 1440 x 792, 8-bit/color RGBA, non-interlaced data/plasmidid-1.6.3+dfsg/img/PIPELNE: cannot open `data/plasmidid-1.6.3+dfsg/img/PIPELNE' (No such file or directory) TFM.png: cannot open `TFM.png' (No such file or directory) data/plasmidid-1.6.3+dfsg/img/SEN30_000195995_K00826.1.png: PNG image data, 3800 x 3800, 8-bit/color RGB, non-interlaced data/plasmidid-1.6.3+dfsg/img/SEN30_000195995_NC_002305.1.png: PNG image data, 3800 x 3800, 8-bit/color RGB, non-interlaced data/plasmidid-1.6.3+dfsg/img/SEN30_000195995_NC_003384.1.png: PNG image data, 3800 x 3800, 8-bit/color RGB, non-interlaced data/plasmidid-1.6.3+dfsg/img/SEN30_000195995_NC_003385.1.png: PNG image data, 3800 x 3800, 8-bit/color RGB, non-interlaced data/plasmidid-1.6.3+dfsg/img/SEN30_000195995_NC_009981.1.png: PNG image data, 3800 x 3800, 8-bit/color RGB, non-interlaced data/plasmidid-1.6.3+dfsg/img/SEN30_000195995_NC_013365.1.png: PNG image data, 3800 x 3800, 8-bit/color RGB, non-interlaced data/plasmidid-1.6.3+dfsg/img/SEN30_000195995_NZ_LT883154.1.png: PNG image data, 3800 x 3800, 8-bit/color RGB, non-interlaced data/plasmidid-1.6.3+dfsg/img/SEN30_000195995_NZ_LT904853.1.png: PNG image data, 3800 x 3800, 8-bit/color RGB, non-interlaced data/plasmidid-1.6.3+dfsg/img/SEN30_000195995_NZ_LT904874.1.png: PNG image data, 3800 x 3800, 8-bit/color RGB, non-interlaced data/plasmidid-1.6.3+dfsg/img/SEN30_000195995_NZ_LT904880.1.png: PNG image data, 3800 x 3800, 8-bit/color RGB, non-interlaced data/plasmidid-1.6.3+dfsg/img/SEN30_000195995_NZ_LT904895.1.png: PNG image data, 3800 x 3800, 8-bit/color RGB, non-interlaced data/plasmidid-1.6.3+dfsg/img/SEN_summary.png: PNG image data, 3800 x 3800, 8-bit/color RGB, non-interlaced data/plasmidid-1.6.3+dfsg/img/SEN_summary_numbers.png: PNG image data, 1267 x 1357, 8-bit/color RGB, non-interlaced data/plasmidid-1.6.3+dfsg/img/Short_pipeline.png: PNG image data, 773 x 1222, 8-bit/color RGB, non-interlaced data/plasmidid-1.6.3+dfsg/img/Visualization.png: PNG image data, 960 x 540, 8-bit/color RGBA, non-interlaced data/plasmidid-1.6.3+dfsg/img/isciii_logo.jpeg: JPEG image data, JFIF standard 1.02, resolution (DPI), density 72x72, segment length 16, Exif Standard: [TIFF image data, big-endian, direntries=7, orientation=upper-left, xresolution=98, yresolution=106, resolutionunit=2, software=Adobe Photoshop CS Windows, datetime=2012:11:15 12:57:41], baseline, precision 8, 600x160, components 3 data/plasmidid-1.6.3+dfsg/img/pipeline_pID.png: PNG image data, 2445 x 4315, 8-bit/color RGB, non-interlaced data/plasmidid-1.6.3+dfsg/img/plasmidID_logo.png: PNG image data, 666 x 677, 8-bit/color RGB, non-interlaced data/plasmidid-1.6.3+dfsg/img/summary_image_1_3.png: PNG image data, 960 x 540, 8-bit/color RGBA, non-interlaced data/plasmidid-1.6.3+dfsg/img/summary_image_2_3.png: PNG image data, 960 x 540, 8-bit/color RGBA, non-interlaced data/plasmidid-1.6.3+dfsg/img/summary_image_3_3.png: PNG image data, 960 x 540, 8-bit/color RGBA, non-interlaced data/plasmidid-1.6.3+dfsg/old/01_Trimmer_assembler_validater_BU_ISCIII.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/old/05_Quast_report_BU_ISCIII.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/old/1_filter_reads_to_plasmid_ddbb.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/old/2_Find_plasmid_with_more_coverage.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/old/3_Draw_plasmid_with_more_coverage.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/old/4_Draw_circos_images.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/old/5_Stats_coverage.sh: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/old/bp_genbank2gff3.pl: Perl script text executable data/plasmidid-1.6.3+dfsg/plasmidID_200316.ylm: ASCII text data/plasmidid-1.6.3+dfsg/spec-list_plasmidID_20191122.txt: ASCII text data/plasmidid-1.6.3+dfsg/debian/bin/plasmidID: Bourne-Again shell script, ASCII text executable data/plasmidid-1.6.3+dfsg/debian/changelog: ASCII text data/plasmidid-1.6.3+dfsg/debian/control: ASCII text data/plasmidid-1.6.3+dfsg/debian/copyright: UTF-8 Unicode text data/plasmidid-1.6.3+dfsg/debian/install: ASCII text data/plasmidid-1.6.3+dfsg/debian/manpages: ASCII text data/plasmidid-1.6.3+dfsg/debian/patches/AdjustPythonPath.patch: unified diff output, ASCII text data/plasmidid-1.6.3+dfsg/debian/patches/fixTests.patch: unified diff output, ASCII text data/plasmidid-1.6.3+dfsg/debian/patches/series: ASCII text data/plasmidid-1.6.3+dfsg/debian/patches/spelling.patch: unified diff output, ASCII text data/plasmidid-1.6.3+dfsg/debian/plasmidID.h2m: ASCII text data/plasmidid-1.6.3+dfsg/debian/rules: a /usr/bin/make -f script, ASCII text executable data/plasmidid-1.6.3+dfsg/debian/salsa-ci.yml: ASCII text data/plasmidid-1.6.3+dfsg/debian/source/format: ASCII text data/plasmidid-1.6.3+dfsg/debian/upstream/metadata: ASCII text data/plasmidid-1.6.3+dfsg/debian/watch: ASCII text data/plasmidid-1.6.3+dfsg/.pc/.version: ASCII text data/plasmidid-1.6.3+dfsg/.pc/.quilt_patches: ASCII text data/plasmidid-1.6.3+dfsg/.pc/.quilt_series: ASCII text data/plasmidid-1.6.3+dfsg/.pc/applied-patches: ASCII text data/plasmidid-1.6.3+dfsg/.pc/fixTests.patch/TEST_DATA/test.sh: Bourne-Again shell script, UTF-8 Unicode text executable data/plasmidid-1.6.3+dfsg/.pc/AdjustPythonPath.patch/bin/download_plasmid_database.py: Python script, ASCII text executable data/plasmidid-1.6.3+dfsg/.pc/AdjustPythonPath.patch/bin/mashclust.py: Python script, ASCII text executable data/plasmidid-1.6.3+dfsg/.pc/AdjustPythonPath.patch/bin/summary_report_pid.py: Python script, ASCII text executable data/plasmidid-1.6.3+dfsg/.pc/spelling.patch/README.md: ASCII text, with very long lines data/plasmidid-1.6.3+dfsg/.pc/spelling.patch/plasmidID: Bourne-Again shell script, UTF-8 Unicode text executable, with very long lines data/plasmidid-1.6.3+dfsg/README.md: ASCII text, with very long lines data/plasmidid-1.6.3+dfsg/plasmidID: Bourne-Again shell script, UTF-8 Unicode text executable, with very long lines