data/proda-1.0/Block.h:                                                           C++ source, ASCII text
data/proda-1.0/Consistency.h:                                                     C source, ASCII text
data/proda-1.0/GlobalAlign.h:                                                     C++ source, ASCII text
data/proda-1.0/LinkTable.h:                                                       C++ source, ASCII text
data/proda-1.0/LocalAlign.h:                                                      C++ source, ASCII text
data/proda-1.0/Matrix.h:                                                          C++ source, ASCII text
data/proda-1.0/MultiSequence.h:                                                   C++ source, ASCII text
data/proda-1.0/PairAligner.h:                                                     C++ source, ASCII text
data/proda-1.0/ProbModel.h:                                                       C++ source, ASCII text
data/proda-1.0/Score.h:                                                           C source, ASCII text
data/proda-1.0/ScoreMatrix.h:                                                     C++ source, ASCII text
data/proda-1.0/Sequence.h:                                                        C++ source, ASCII text
data/proda-1.0/SparseMatrix.h:                                                    C++ source, ASCII text
data/proda-1.0/Tree.h:                                                            C++ source, ASCII text
data/proda-1.0/Types.h:                                                           C source, ASCII text
data/proda-1.0/Utilities.h:                                                       C source, ASCII text
data/proda-1.0/Consistency.cc:                                                    C source, ASCII text
data/proda-1.0/GlobalAlign.cc:                                                    C source, ASCII text
data/proda-1.0/LocalAlign.cc:                                                     C source, ASCII text
data/proda-1.0/Matrix.cc:                                                         C source, ASCII text
data/proda-1.0/Score.cc:                                                          C source, ASCII text
data/proda-1.0/ScoreMatrix.cc:                                                    C source, ASCII text
data/proda-1.0/Sequence.cc:                                                       C source, ASCII text
data/proda-1.0/SparseMatrix.cc:                                                   C source, ASCII text
data/proda-1.0/Tree.cc:                                                           C source, ASCII text
data/proda-1.0/Utilities.cc:                                                      C source, ASCII text
data/proda-1.0/debian/README.test:                                                ASCII text
data/proda-1.0/debian/changelog:                                                  UTF-8 Unicode text
data/proda-1.0/debian/control:                                                    ASCII text
data/proda-1.0/debian/copyright:                                                  UTF-8 Unicode text
data/proda-1.0/debian/docs:                                                       ASCII text
data/proda-1.0/debian/install:                                                    ASCII text
data/proda-1.0/debian/manpages:                                                   ASCII text
data/proda-1.0/debian/patches/01-fix_gcc4.3_warnings.patch:                       unified diff output, UTF-8 Unicode text
data/proda-1.0/debian/patches/02-fix_CXXFLAGS.patch:                              unified diff output, ASCII text
data/proda-1.0/debian/patches/03-fix_FTBFS_gcc4.3_missing_includes.patch:         unified diff output, ASCII text
data/proda-1.0/debian/patches/04-honour_CXX.patch:                                unified diff output, ASCII text
data/proda-1.0/debian/patches/05-fix_FTBFS_with_GCC6.patch:                       unified diff output, ASCII text
data/proda-1.0/debian/patches/hardening.patch:                                    unified diff output, ASCII text
data/proda-1.0/debian/patches/series:                                             ASCII text
data/proda-1.0/debian/proda.1:                                                    troff or preprocessor input, ASCII text, with very long lines
data/proda-1.0/debian/proda.1.xml:                                                XML 1.0 document, ASCII text, with very long lines
data/proda-1.0/debian/rules:                                                      a /usr/bin/make -f script, ASCII text executable
data/proda-1.0/debian/salsa-ci.yml:                                               ASCII text
data/proda-1.0/debian/source/format:                                              ASCII text
data/proda-1.0/debian/tests/control:                                              ASCII text
data/proda-1.0/debian/tests/input.mfa:                                            ASCII text
data/proda-1.0/debian/tests/run-unit-test:                                        POSIX shell script, ASCII text executable
data/proda-1.0/debian/upstream/metadata:                                          ASCII text
data/proda-1.0/debian/watch:                                                      ASCII text
data/proda-1.0/.pc/.version:                                                      ASCII text
data/proda-1.0/.pc/.quilt_patches:                                                ASCII text
data/proda-1.0/.pc/.quilt_series:                                                 ASCII text
data/proda-1.0/.pc/applied-patches:                                               ASCII text
data/proda-1.0/.pc/01-fix_gcc4.3_warnings.patch/Assert.cc:                        C source, ASCII text
data/proda-1.0/.pc/01-fix_gcc4.3_warnings.patch/Assert.h:                         C source, ASCII text
data/proda-1.0/.pc/01-fix_gcc4.3_warnings.patch/MultiSequence.cc:                 C source, ASCII text
data/proda-1.0/.pc/01-fix_gcc4.3_warnings.patch/ProbModel.cc:                     C source, ASCII text
data/proda-1.0/.pc/02-fix_CXXFLAGS.patch/Makefile:                                ASCII text
data/proda-1.0/.pc/03-fix_FTBFS_gcc4.3_missing_includes.patch/AlignedFragment.cc: C source, ASCII text
data/proda-1.0/.pc/03-fix_FTBFS_gcc4.3_missing_includes.patch/AlignedFragment.h:  C++ source, ASCII text
data/proda-1.0/.pc/03-fix_FTBFS_gcc4.3_missing_includes.patch/Block.cc:           C source, ASCII text
data/proda-1.0/.pc/03-fix_FTBFS_gcc4.3_missing_includes.patch/Main.cc:            C source, ASCII text
data/proda-1.0/.pc/03-fix_FTBFS_gcc4.3_missing_includes.patch/PairAligner.cc:     C source, ASCII text
data/proda-1.0/.pc/03-fix_FTBFS_gcc4.3_missing_includes.patch/ProbModel.cc:       C source, ASCII text
data/proda-1.0/.pc/04-honour_CXX.patch/Makefile:                                  ASCII text
data/proda-1.0/.pc/05-fix_FTBFS_with_GCC6.patch/Main.cc:                          C source, ASCII text
data/proda-1.0/.pc/hardening.patch/Makefile:                                      ASCII text
data/proda-1.0/Assert.cc:                                                         C source, ASCII text
data/proda-1.0/Assert.h:                                                          C source, ASCII text
data/proda-1.0/MultiSequence.cc:                                                  C source, ASCII text
data/proda-1.0/AlignedFragment.cc:                                                C source, ASCII text
data/proda-1.0/AlignedFragment.h:                                                 C++ source, ASCII text
data/proda-1.0/Block.cc:                                                          C source, ASCII text
data/proda-1.0/PairAligner.cc:                                                    C source, ASCII text
data/proda-1.0/ProbModel.cc:                                                      C source, ASCII text
data/proda-1.0/Main.cc:                                                           C source, ASCII text
data/proda-1.0/Makefile:                                                          ASCII text