data/r-cran-tcr-2.3.2+ds/NAMESPACE: ASCII text data/r-cran-tcr-2.3.2+ds/README.md: ASCII text, with very long lines data/r-cran-tcr-2.3.2+ds/data/datalist: ASCII text data/r-cran-tcr-2.3.2+ds/data/twb.rda: bzip2 compressed data, block size = 900k data/r-cran-tcr-2.3.2+ds/data/genesegments.rda: bzip2 compressed data, block size = 900k data/r-cran-tcr-2.3.2+ds/data/beta.prob.rda: gzip compressed data, from Unix, original size modulo 2^32 32837 data/r-cran-tcr-2.3.2+ds/data/twa.rda: gzip compressed data, from Unix, original size modulo 2^32 6364206 data/r-cran-tcr-2.3.2+ds/man/repDiversity.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/vis.heatmap.Rd: assembler source, ASCII text data/r-cran-tcr-2.3.2+ds/man/sample.clones.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/gc.content.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/find.clonotypes.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/assymetry.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/mutation.network.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/dot-column.choice.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/vis.clonal.space.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/vis.rarefaction.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/shared.repertoire.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/kmer.table.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/vis.count.len.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/get.kmers.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/contamination.stats.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/set.rank.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/rarefaction.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/vis.shared.clonotypes.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/entropy.seg.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/pca.segments.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/check.distribution.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/beta.prob.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/generate.kmers.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/vis.top.proportions.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/gibbs.sampler.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/generate.tcr.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/matrixSubgroups.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/apply.symm.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/cosine.sharing.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/set.people.vector.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/get.all.substrings.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/barcodes.to.reads.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/dot-add.legend.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/ozScore.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/top.fun.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/column.summary.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/loglikelihood.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/set.group.vector.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/top.cross.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/repSave.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/entropy.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/cloneset.stats.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/vis.pca.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/group.clonotypes.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/segments.list.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/segments.alphabets.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/permutedf.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/vis.gene.usage.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/tailbound.proportion.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/set.pb.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/find.similar.sequences.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/clonal.space.homeostasis.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/sample2D.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/vis.clonal.dynamics.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/vis.logo.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/vis.kmer.histogram.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/parse.cloneset.Rd: assembler source, ASCII text data/r-cran-tcr-2.3.2+ds/man/get.inframes.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/repOverlap.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/matrixdiagcopy.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/vis.group.boxplot.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/fix.alleles.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/inverse.simpson.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/kmer.profile.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/convergence.index.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/revcomp.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/codon.variants.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/startmitcr.Rd: assembler source, ASCII text data/r-cran-tcr-2.3.2+ds/man/spectratype.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/geneUsage.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/reverse.string.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/parse.folder.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/mutated.neighbours.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/resample.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/dot-verbose.msg.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/cosine.similarity.Rd: ASCII text, with very long lines data/r-cran-tcr-2.3.2+ds/man/repLoad.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/vis.radarlike.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/bootstrap.tcr.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/get.deletions.alpha.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/dot-fix.listnames.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/AA_TABLE.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/intersectClonesets.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/vis.number.count.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/pca2euclid.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/twinsdata.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/permutDistTest.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/man/has.class.Rd: ASCII text data/r-cran-tcr-2.3.2+ds/DESCRIPTION: ASCII text data/r-cran-tcr-2.3.2+ds/src/neighbour.search.cpp: C++ source, ASCII text data/r-cran-tcr-2.3.2+ds/src/Makevars: ASCII text data/r-cran-tcr-2.3.2+ds/src/RcppExports.cpp: C source, ASCII text data/r-cran-tcr-2.3.2+ds/vignettes/tcrvignette.Rmd: exported SGML document, ASCII text, with very long lines data/r-cran-tcr-2.3.2+ds/NEWS: ASCII text, with no line terminators data/r-cran-tcr-2.3.2+ds/R/kmers.R: ASCII text data/r-cran-tcr-2.3.2+ds/R/datatools.R: ASCII text data/r-cran-tcr-2.3.2+ds/R/strtools.R: ASCII text data/r-cran-tcr-2.3.2+ds/R/crosses.R: assembler source, ASCII text data/r-cran-tcr-2.3.2+ds/R/spectrum.R: ASCII text data/r-cran-tcr-2.3.2+ds/R/onload.R: ASCII text data/r-cran-tcr-2.3.2+ds/R/io.R: ASCII text data/r-cran-tcr-2.3.2+ds/R/filters.R: ASCII text data/r-cran-tcr-2.3.2+ds/R/stats.R: ASCII text data/r-cran-tcr-2.3.2+ds/R/repdiversity.R: ASCII text data/r-cran-tcr-2.3.2+ds/R/plots.R: assembler source, ASCII text data/r-cran-tcr-2.3.2+ds/R/infoanalysis.R: ASCII text data/r-cran-tcr-2.3.2+ds/R/RcppExports.R: ASCII text data/r-cran-tcr-2.3.2+ds/R/docdata.R: ASCII text, with very long lines data/r-cran-tcr-2.3.2+ds/R/dataproc.R: ASCII text data/r-cran-tcr-2.3.2+ds/R/mitcr.R: assembler source, ASCII text data/r-cran-tcr-2.3.2+ds/R/measures.R: ASCII text, with very long lines data/r-cran-tcr-2.3.2+ds/R/diversity.R: ASCII text data/r-cran-tcr-2.3.2+ds/R/segments.R: ASCII text data/r-cran-tcr-2.3.2+ds/R/graph.R: ASCII text data/r-cran-tcr-2.3.2+ds/R/shared.R: ASCII text data/r-cran-tcr-2.3.2+ds/R/repoverlap.R: assembler source, ASCII text data/r-cran-tcr-2.3.2+ds/R/parsing.R: ASCII text data/r-cran-tcr-2.3.2+ds/MD5: ASCII text data/r-cran-tcr-2.3.2+ds/inst/crossanalysis.report.Rmd: ASCII text data/r-cran-tcr-2.3.2+ds/inst/doc/tcrvignette.R: ASCII text data/r-cran-tcr-2.3.2+ds/inst/doc/tcrvignette.Rmd: exported SGML document, ASCII text, with very long lines data/r-cran-tcr-2.3.2+ds/inst/CITATION: ASCII text data/r-cran-tcr-2.3.2+ds/inst/library.report.Rmd: ASCII text data/r-cran-tcr-2.3.2+ds/debian/README.source: ASCII text data/r-cran-tcr-2.3.2+ds/debian/changelog: UTF-8 Unicode text data/r-cran-tcr-2.3.2+ds/debian/control: ASCII text data/r-cran-tcr-2.3.2+ds/debian/copyright: ASCII text data/r-cran-tcr-2.3.2+ds/debian/rules: a /usr/bin/make -f script, ASCII text executable data/r-cran-tcr-2.3.2+ds/debian/salsa-ci.yml: ASCII text data/r-cran-tcr-2.3.2+ds/debian/source/format: ASCII text data/r-cran-tcr-2.3.2+ds/debian/upstream/metadata: ASCII text data/r-cran-tcr-2.3.2+ds/debian/watch: ASCII text data/r-cran-tcr-2.3.2+ds/.pc/.version: ASCII text data/r-cran-tcr-2.3.2+ds/.pc/.quilt_patches: ASCII text data/r-cran-tcr-2.3.2+ds/.pc/.quilt_series: ASCII text data/r-cran-tcr-2.3.2+ds/.pc/applied-patches: empty