data/snap-aligner-1.0.0+dfsg/.gitignore: ASCII text data/snap-aligner-1.0.0+dfsg/COPYING: ASCII text data/snap-aligner-1.0.0+dfsg/LICENSE: ASCII text data/snap-aligner-1.0.0+dfsg/README.md: ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/AffineGap.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/AffineGap.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/AffineGapVectorized.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/AffineGapVectorized.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/AlignerContext.cpp: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/AlignerContext.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/AlignerOptions.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/AlignerStats.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/AlignerStats.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/AlignmentAdjuster.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/AlignmentAdjuster.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/AlignmentResult.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/AlignmentResult.h: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/ApproximateCounter.cpp: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/ApproximateCounter.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/Bam.cpp: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/Bam.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/BaseAligner.cpp: C++ source, ASCII text, with very long lines data/snap-aligner-1.0.0+dfsg/SNAPLib/BaseAligner.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/BigAlloc.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/BigAlloc.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/BufferedAsync.cpp: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/BufferedAsync.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/ChimericPairedEndAligner.cpp: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/ChimericPairedEndAligner.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/CommandProcessor.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/CommandProcessor.h: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/DataReader.cpp: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/DataReader.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/DataWriter.cpp: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/DataWriter.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/Error.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/Error.h: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/FASTA.cpp: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/FASTA.h: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/FASTQ.cpp: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/FASTQ.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/FileFormat.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/FixedSizeMap.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/FixedSizeSet.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/FixedSizeVector.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/GenericFile.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/GenericFile.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/GenericFile_Blob.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/GenericFile_Blob.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/GenericFile_HDFS.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/GenericFile_HDFS.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/GenericFile_map.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/GenericFile_stdio.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/GenericFile_stdio.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/Genome.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/Genome.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/GenomeIndex.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/GzipDataWriter.cpp: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/GzipDataWriter.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/HashTable.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/HashTable.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/Histogram.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/Histogram.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/IntersectingPairedEndAligner.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/IntersectingPairedEndAligner.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/LandauVishkin.cpp: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/LandauVishkin.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/MultiInputReadSupplier.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/MultiInputReadSupplier.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/PairedAligner.cpp: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/PairedAligner.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/PairedEndAligner.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/PairedReadMatcher.cpp: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/ParallelTask.cpp: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/ParallelTask.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/PriorityQueue.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/ProbabilityDistance.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/ProbabilityDistance.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/RangeSplitter.cpp: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/RangeSplitter.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/Read.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/Read.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/ReadReader.cpp: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/ReadSupplierQueue.cpp: C source, ASCII text, with very long lines data/snap-aligner-1.0.0+dfsg/SNAPLib/ReadSupplierQueue.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/ReadWriter.cpp: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/SAM.cpp: C++ source, UTF-8 Unicode text data/snap-aligner-1.0.0+dfsg/SNAPLib/SAM.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/SNAPLib.vcxproj: XML 1.0 document, UTF-8 Unicode (with BOM) text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/SNAPLib/SNAPLib.vcxproj.filters: XML 1.0 document, UTF-8 Unicode (with BOM) text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/SNAPLib/Seed.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/Seed.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/SeedSequencer.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/SeedSequencer.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/SingleAligner.cpp: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/SingleAligner.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/SortedDataWriter.cpp: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/Tables.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/Tables.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/Util.cpp: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/Util.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/VariableSizeMap.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/VariableSizeVector.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/WindowsFileMapper.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/directions.h: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/exit.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/exit.h: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/mapq.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/mapq.h: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/options.h: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/stdafx.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/stdafx.h: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/targetver.h: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/GenericFile_map.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/Compat.cpp: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/AlignerOptions.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/GenomeIndex.cpp: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/SNAPLib/Compat.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/apps/ComputeROC/.gitignore: ASCII text data/snap-aligner-1.0.0+dfsg/apps/ComputeROC/ComputeROC.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/apps/ComputeROC/ComputeROC.vcxproj: XML 1.0 document, UTF-8 Unicode (with BOM) text data/snap-aligner-1.0.0+dfsg/apps/ComputeROC/ComputeROC.vcxproj.filters: XML 1.0 document, UTF-8 Unicode (with BOM) text data/snap-aligner-1.0.0+dfsg/apps/ComputeROC/stdafx.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/apps/ComputeROC/stdafx.h: C source, ASCII text data/snap-aligner-1.0.0+dfsg/apps/ComputeROC/targetver.h: C source, ASCII text data/snap-aligner-1.0.0+dfsg/apps/SNAPCommand/SNAPCommand.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/apps/SNAPCommand/SNAPCommand.vcxproj: XML 1.0 document, UTF-8 Unicode (with BOM) text data/snap-aligner-1.0.0+dfsg/apps/SNAPCommand/SNAPCommand.vcxproj.filters: XML 1.0 document, UTF-8 Unicode (with BOM) text data/snap-aligner-1.0.0+dfsg/apps/SNAPCommand/stdafx.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/apps/SNAPCommand/stdafx.h: C source, ASCII text data/snap-aligner-1.0.0+dfsg/apps/ToFASTQ/ToFASTQ.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/apps/ToFASTQ/ToFASTQ.vcxproj: XML 1.0 document, UTF-8 Unicode (with BOM) text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/apps/ToFASTQ/ToFASTQ.vcxproj.filters: XML 1.0 document, UTF-8 Unicode (with BOM) text data/snap-aligner-1.0.0+dfsg/apps/ToFASTQ/stdafx.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/apps/ToFASTQ/stdafx.h: C source, ASCII text data/snap-aligner-1.0.0+dfsg/apps/snap/Main.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/apps/snap/snap.vcxproj: XML 1.0 document, UTF-8 Unicode (with BOM) text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/apps/snap/snap.vcxproj.filters: XML 1.0 document, UTF-8 Unicode (with BOM) text data/snap-aligner-1.0.0+dfsg/apps/snap/stdafx.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/apps/snap/stdafx.h: C source, ASCII text data/snap-aligner-1.0.0+dfsg/apps/wc/stdafx.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/apps/wc/stdafx.h: C source, ASCII text data/snap-aligner-1.0.0+dfsg/apps/wc/targetver.h: C source, ASCII text data/snap-aligner-1.0.0+dfsg/apps/wc/wc.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/apps/wc/wc.vcxproj: XML 1.0 document, UTF-8 Unicode (with BOM) text data/snap-aligner-1.0.0+dfsg/apps/wc/wc.vcxproj.filters: XML 1.0 document, UTF-8 Unicode (with BOM) text data/snap-aligner-1.0.0+dfsg/docs/QuickStart.docx: Microsoft Word 2007+ data/snap-aligner-1.0.0+dfsg/docs/QuickStart.pdf: PDF document, version 1.7 data/snap-aligner-1.0.0+dfsg/docs/SNAP: cannot open `data/snap-aligner-1.0.0+dfsg/docs/SNAP' (No such file or directory) User: cannot open `User' (No such file or directory) Manual.docx: cannot open `Manual.docx' (No such file or directory) data/snap-aligner-1.0.0+dfsg/docs/SNAP: cannot open `data/snap-aligner-1.0.0+dfsg/docs/SNAP' (No such file or directory) User: cannot open `User' (No such file or directory) Manual.pdf: cannot open `Manual.pdf' (No such file or directory) data/snap-aligner-1.0.0+dfsg/import/libhdfs.lib: current ar archive data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/inc/exception.h: C source, ASCII text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/inc/expect.h: C source, ASCII text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/inc/hdfs.h: C source, ASCII text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/inc/hdfs_test.h: C source, ASCII text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/inc/jni_helper.h: C source, ASCII text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/inc/native_mini_dfs.h: C source, ASCII text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/inc/stdint.h-xx: C source, ASCII text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/inc/uthash.h: C source, ASCII text data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/libhdfs.sln: UTF-8 Unicode (with BOM) text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/libhdfs/ReadMe.txt: ASCII text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/libhdfs/libhdfs.vcxproj: XML 1.0 document, UTF-8 Unicode (with BOM) text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/libhdfs/libhdfs.vcxproj.filters: XML 1.0 document, UTF-8 Unicode (with BOM) text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/libhdfs/stdafx.cpp: C source, ASCII text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/libhdfs/stdafx.h: C source, ASCII text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/libhdfs/targetver.h: C source, ASCII text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/src/.cmake.state: data data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/src/LICENSE.txt: ASCII text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/src/NOTICE.txt: ASCII text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/src/exception.c: C source, ASCII text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/src/hdfs.c: C source, ASCII text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/src/jni_helper.c: C source, ASCII text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/src/makefile.twb: makefile script, ASCII text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/src/makefile.twb.options: ASCII text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/src/native_mini_dfs.c: C source, ASCII text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/src/test_libhdfs_ops.c: C source, ASCII text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/src/test_libhdfs_read.c: C source, ASCII text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/src/test_libhdfs_threaded.c: C source, ASCII text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/src/test_libhdfs_write.c: C source, ASCII text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/import/pdclibhdfs/src/test_native_mini_dfs.c: C source, ASCII text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/scripts/testhdfs.bat: ASCII text, with CRLF line terminators data/snap-aligner-1.0.0+dfsg/snap.sln: UTF-8 Unicode (with BOM) text data/snap-aligner-1.0.0+dfsg/tests/.gitignore: ASCII text data/snap-aligner-1.0.0+dfsg/tests/AffineGapTest.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/tests/AffineGapVectorizedTest.cpp: C source, ASCII text, with very long lines data/snap-aligner-1.0.0+dfsg/tests/EventTest.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/tests/LandauVishkinTest.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/tests/ProbabilityDistanceTest.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/tests/TestLib.cpp: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/tests/TestLib.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/tests/datatest.py: Python script, ASCII text executable data/snap-aligner-1.0.0+dfsg/tests/datatest/.gitignore: ASCII text, with no line terminators data/snap-aligner-1.0.0+dfsg/tests/datatest/correct-fq-datatest.sam: Sequence Alignment/Map (SAM), with header version 1.4 data/snap-aligner-1.0.0+dfsg/tests/datatest/correct-fq-datatest2.sam: Sequence Alignment/Map (SAM), with header version 1.4 data/snap-aligner-1.0.0+dfsg/tests/datatest/correct-sam-datatest.sam: Sequence Alignment/Map (SAM), with header version 1.4 data/snap-aligner-1.0.0+dfsg/tests/datatest/correct-sam-datatest2.sam: Sequence Alignment/Map (SAM), with header version 1.4 data/snap-aligner-1.0.0+dfsg/tests/datatest/datatest.bam: Blocked GNU Zip Format (BGZF; gzip compatible), block length 177 data/snap-aligner-1.0.0+dfsg/tests/datatest/datatest.fa: ASCII text data/snap-aligner-1.0.0+dfsg/tests/datatest/datatest.fq: ASCII text data/snap-aligner-1.0.0+dfsg/tests/datatest/datatest.sam: Sequence Alignment/Map (SAM), with header version 1.4 data/snap-aligner-1.0.0+dfsg/tests/datatest/datatest2.fa: ASCII text data/snap-aligner-1.0.0+dfsg/tests/dup_reads.py: Python script, ASCII text executable data/snap-aligner-1.0.0+dfsg/tests/filetest.py: Python script, ASCII text executable data/snap-aligner-1.0.0+dfsg/tests/main.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/tests/tests.vcxproj: XML 1.0 document, UTF-8 Unicode (with BOM) text data/snap-aligner-1.0.0+dfsg/tests/tests.vcxproj.filters: XML 1.0 document, UTF-8 Unicode (with BOM) text data/snap-aligner-1.0.0+dfsg/debian/README.Debian: ASCII text data/snap-aligner-1.0.0+dfsg/debian/README.test: UTF-8 Unicode text data/snap-aligner-1.0.0+dfsg/debian/changelog: ASCII text data/snap-aligner-1.0.0+dfsg/debian/control: ASCII text data/snap-aligner-1.0.0+dfsg/debian/copyright: UTF-8 Unicode text data/snap-aligner-1.0.0+dfsg/debian/doc-base.manual: ASCII text data/snap-aligner-1.0.0+dfsg/debian/doc-base.quickstart: ASCII text data/snap-aligner-1.0.0+dfsg/debian/docs: ASCII text data/snap-aligner-1.0.0+dfsg/debian/examples: ASCII text data/snap-aligner-1.0.0+dfsg/debian/install: ASCII text data/snap-aligner-1.0.0+dfsg/debian/manpages: ASCII text data/snap-aligner-1.0.0+dfsg/debian/patches/drop-msse: unified diff output, ASCII text data/snap-aligner-1.0.0+dfsg/debian/patches/fix_segfault.patch: unified diff output, ASCII text data/snap-aligner-1.0.0+dfsg/debian/patches/non-x86-and-kfreebsd: unified diff output, ASCII text data/snap-aligner-1.0.0+dfsg/debian/patches/series: ASCII text data/snap-aligner-1.0.0+dfsg/debian/patches/simde: unified diff output, ASCII text data/snap-aligner-1.0.0+dfsg/debian/patches/spelling: unified diff output, ASCII text data/snap-aligner-1.0.0+dfsg/debian/rules: a /usr/bin/make -f script, ASCII text executable data/snap-aligner-1.0.0+dfsg/debian/salsa-ci.yml: ASCII text data/snap-aligner-1.0.0+dfsg/debian/snap-aligner-index-man-include: ASCII text data/snap-aligner-1.0.0+dfsg/debian/snap-aligner-paired-man-include: ASCII text data/snap-aligner-1.0.0+dfsg/debian/snap-aligner-single-man-include: ASCII text data/snap-aligner-1.0.0+dfsg/debian/source/format: ASCII text data/snap-aligner-1.0.0+dfsg/debian/tests/control: ASCII text data/snap-aligner-1.0.0+dfsg/debian/tests/ref/datatest/Genome: ASCII text, with very long lines data/snap-aligner-1.0.0+dfsg/debian/tests/ref/datatest/GenomeIndex: ASCII text, with no line terminators data/snap-aligner-1.0.0+dfsg/debian/tests/ref/datatest2/Genome: ASCII text, with very long lines data/snap-aligner-1.0.0+dfsg/debian/tests/ref/datatest2/GenomeIndex: ASCII text, with no line terminators data/snap-aligner-1.0.0+dfsg/debian/tests/ref/output.sam: Sequence Alignment/Map (SAM), with header version 1.4 data/snap-aligner-1.0.0+dfsg/debian/tests/run-unit-test: Bourne-Again shell script, ASCII text executable data/snap-aligner-1.0.0+dfsg/debian/upstream/metadata: ASCII text data/snap-aligner-1.0.0+dfsg/debian/watch: ASCII text data/snap-aligner-1.0.0+dfsg/.pc/.version: ASCII text data/snap-aligner-1.0.0+dfsg/.pc/.quilt_patches: ASCII text data/snap-aligner-1.0.0+dfsg/.pc/.quilt_series: ASCII text data/snap-aligner-1.0.0+dfsg/.pc/applied-patches: ASCII text data/snap-aligner-1.0.0+dfsg/.pc/fix_segfault.patch/SNAPLib/GenericFile_map.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/.pc/non-x86-and-kfreebsd/SNAPLib/Compat.cpp: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/.pc/non-x86-and-kfreebsd/SNAPLib/Compat.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/.pc/drop-msse/Makefile: makefile script, ASCII text data/snap-aligner-1.0.0+dfsg/.pc/spelling/SNAPLib/AlignerOptions.cpp: C source, ASCII text data/snap-aligner-1.0.0+dfsg/.pc/spelling/SNAPLib/GenomeIndex.cpp: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/.pc/simde/SNAPLib/Compat.h: C++ source, ASCII text data/snap-aligner-1.0.0+dfsg/Makefile: makefile script, ASCII text