data/survivor-1.0.7/Debug/objects.mk: ASCII text data/survivor-1.0.7/Debug/sources.mk: automake makefile script, ASCII text data/survivor-1.0.7/Debug/src/analysis_sv/subdir.mk: ASCII text data/survivor-1.0.7/Debug/src/convert/subdir.mk: ASCII text data/survivor-1.0.7/Debug/src/merge_vcf/subdir.mk: ASCII text data/survivor-1.0.7/Debug/src/phasing/subdir.mk: ASCII text data/survivor-1.0.7/Debug/src/scrup_vcf/subdir.mk: ASCII text data/survivor-1.0.7/Debug/src/simulator/subdir.mk: ASCII text data/survivor-1.0.7/Debug/src/snp_overlap/subdir.mk: ASCII text data/survivor-1.0.7/Debug/src/vcfs/subdir.mk: ASCII text data/survivor-1.0.7/Debug/src/subdir.mk: ASCII text data/survivor-1.0.7/Debug/makefile: makefile script, ASCII text data/survivor-1.0.7/HG002_Pac_error_profile_bwa.txt.zip: Zip archive data, at least v2.0 to extract data/survivor-1.0.7/INSTALL: ASCII text data/survivor-1.0.7/LICENSE: ASCII text data/survivor-1.0.7/NA12878_nano_error_profile_bwa.txt.zip: Zip archive data, at least v2.0 to extract data/survivor-1.0.7/README.md: UTF-8 Unicode text data/survivor-1.0.7/src/CorrectAllele.cpp: C source, ASCII text data/survivor-1.0.7/src/CorrectAllele.h: C source, ASCII text data/survivor-1.0.7/src/DetectDif.cpp: C source, ASCII text data/survivor-1.0.7/src/DetectDif.h: C++ source, ASCII text data/survivor-1.0.7/src/Extract_Seq.cpp: C source, ASCII text data/survivor-1.0.7/src/Extract_Seq.h: C source, ASCII text data/survivor-1.0.7/src/GzipStream.h: C++ source, ASCII text data/survivor-1.0.7/src/R-scripts/SUR_plots.R: a /usr/local/bin/Rscript script, ASCII text executable data/survivor-1.0.7/src/SURVIVOR.cpp: C source, ASCII text data/survivor-1.0.7/src/Summarize_SV.cpp: C source, ASCII text data/survivor-1.0.7/src/Summarize_SV.h: C++ source, ASCII text data/survivor-1.0.7/src/analysis_sv/GIAB_summary.cpp: C source, ASCII text data/survivor-1.0.7/src/analysis_sv/GIAB_summary.h: C++ source, ASCII text data/survivor-1.0.7/src/analysis_sv/MT_identifier.cpp: C source, ASCII text data/survivor-1.0.7/src/analysis_sv/MT_identifier.h: C++ source, ASCII text data/survivor-1.0.7/src/analysis_sv/MUMmer_overlap.cpp: C source, ASCII text data/survivor-1.0.7/src/analysis_sv/MUMmer_overlap.h: C++ source, ASCII text data/survivor-1.0.7/src/analysis_sv/Select_samples.cpp: C source, ASCII text data/survivor-1.0.7/src/analysis_sv/Select_samples.h: C++ source, ASCII text data/survivor-1.0.7/src/analysis_sv/Simplify_SVs.cpp: C source, ASCII text data/survivor-1.0.7/src/analysis_sv/Simplify_SVs.h: C++ source, ASCII text data/survivor-1.0.7/src/analysis_sv/Summ_mat.cpp: C source, ASCII text data/survivor-1.0.7/src/analysis_sv/Summ_mat.h: C++ source, ASCII text data/survivor-1.0.7/src/convert/ConvertMQ0Bed.cpp: C source, ASCII text data/survivor-1.0.7/src/convert/ConvertMQ0Bed.h: C source, ASCII text data/survivor-1.0.7/src/convert/Convert_Assemblytics.cpp: C source, ASCII text data/survivor-1.0.7/src/convert/Convert_Assemblytics.h: C source, ASCII text data/survivor-1.0.7/src/convert/Convert_Bionano.cpp: C source, ASCII text data/survivor-1.0.7/src/convert/Convert_Bionano.h: C source, ASCII text data/survivor-1.0.7/src/convert/Convert_Honey_tails.cpp: C source, ASCII text data/survivor-1.0.7/src/convert/Convert_Honey_tails.h: C source, ASCII text data/survivor-1.0.7/src/convert/Convert_MUMmer.cpp: C source, ASCII text data/survivor-1.0.7/src/convert/Convert_MUMmer.h: C source, ASCII text data/survivor-1.0.7/src/convert/Convert_Pindel.cpp: C source, ASCII text data/survivor-1.0.7/src/convert/Convert_Pindel.h: C source, ASCII text data/survivor-1.0.7/src/convert/Convert_VCF_to_BED.cpp: C source, ASCII text data/survivor-1.0.7/src/convert/Convert_VCF_to_BED.h: C source, ASCII text data/survivor-1.0.7/src/convert/Convert_hapcut2.cpp: C source, ASCII text data/survivor-1.0.7/src/convert/Convert_hapcut2.h: C++ source, ASCII text data/survivor-1.0.7/src/convert/Process_Coverage.cpp: C source, ASCII text data/survivor-1.0.7/src/convert/Process_Coverage.h: C source, ASCII text data/survivor-1.0.7/src/convert/Process_Lumpy.cpp: C source, ASCII text data/survivor-1.0.7/src/convert/Process_Lumpy.h: C source, ASCII text data/survivor-1.0.7/src/convert/Update_bam_pacbio.cpp: C source, ASCII text data/survivor-1.0.7/src/convert/Update_bam_pacbio.h: C source, ASCII text data/survivor-1.0.7/src/merge_vcf/IntervallTree.cpp: C source, ASCII text data/survivor-1.0.7/src/merge_vcf/IntervallTree.h: C++ source, ASCII text data/survivor-1.0.7/src/merge_vcf/Paramer.h: C++ source, ASCII text data/survivor-1.0.7/src/merge_vcf/TNode.h: C++ source, ASCII text data/survivor-1.0.7/src/merge_vcf/combine_svs.cpp: C source, ASCII text data/survivor-1.0.7/src/merge_vcf/combine_svs.h: C++ source, ASCII text data/survivor-1.0.7/src/phasing/Phasing_vcf.cpp: C source, ASCII text data/survivor-1.0.7/src/phasing/Phasing_vcf.h: C source, ASCII text data/survivor-1.0.7/src/scrup_vcf/scrup_svs.cpp: C source, ASCII text data/survivor-1.0.7/src/scrup_vcf/scrup_vcf.h: C source, ASCII text data/survivor-1.0.7/src/simulator/Error_scanner.cpp: C source, ASCII text data/survivor-1.0.7/src/simulator/Error_scanner.h: C++ source, ASCII text data/survivor-1.0.7/src/simulator/Eval_vcf.cpp: C source, ASCII text data/survivor-1.0.7/src/simulator/Eval_vcf.h: C source, ASCII text data/survivor-1.0.7/src/simulator/Pac_Simulator.cpp: C source, ASCII text data/survivor-1.0.7/src/simulator/Pac_Simulator.h: C source, ASCII text data/survivor-1.0.7/src/simulator/SV_Simulator.cpp: C source, ASCII text data/survivor-1.0.7/src/simulator/SV_Simulator.h: C source, ASCII text data/survivor-1.0.7/src/simulator/Sim_reads.cpp: C source, ASCII text data/survivor-1.0.7/src/simulator/Sim_reads.h: C++ source, ASCII text data/survivor-1.0.7/src/simulator/test_cov.cpp: C source, ASCII text data/survivor-1.0.7/src/simulator/test_cov.h: C++ source, ASCII text data/survivor-1.0.7/src/snp_overlap/Overlap_snps.cpp: C source, ASCII text data/survivor-1.0.7/src/snp_overlap/Overlap_snps.h: C++ source, ASCII text data/survivor-1.0.7/src/structs.h: C source, ASCII text data/survivor-1.0.7/src/vcfs/Annotate_vcf.cpp: C source, ASCII text data/survivor-1.0.7/src/vcfs/Annotate_vcf.h: C source, ASCII text data/survivor-1.0.7/src/vcfs/Combine_3_VCF.cpp: C source, ASCII text data/survivor-1.0.7/src/vcfs/Combine_3_VCF.h: C source, ASCII text data/survivor-1.0.7/src/vcfs/Compoverlap_VCF.cpp: C source, ASCII text data/survivor-1.0.7/src/vcfs/Compoverlap_VCF.h: C source, ASCII text data/survivor-1.0.7/src/vcfs/Detect_nested.cpp: C source, ASCII text data/survivor-1.0.7/src/vcfs/Detect_nested.h: C source, ASCII text data/survivor-1.0.7/src/vcfs/Filter_vcf.cpp: C source, ASCII text, with very long lines data/survivor-1.0.7/src/vcfs/Filter_vcf.h: C source, ASCII text data/survivor-1.0.7/src/vcfs/Generate_distMat.cpp: C source, ASCII text data/survivor-1.0.7/src/vcfs/Generate_distMat.h: C source, ASCII text data/survivor-1.0.7/src/vcfs/Merge_VCF.cpp: C source, ASCII text data/survivor-1.0.7/src/vcfs/Merge_VCF.h: C source, ASCII text data/survivor-1.0.7/debian/README.test: UTF-8 Unicode text data/survivor-1.0.7/debian/SURVIVOR.1: troff or preprocessor input, ASCII text data/survivor-1.0.7/debian/changelog: ASCII text data/survivor-1.0.7/debian/control: ASCII text data/survivor-1.0.7/debian/copyright: ASCII text data/survivor-1.0.7/debian/createmanpages: POSIX shell script, ASCII text executable data/survivor-1.0.7/debian/manpages: ASCII text data/survivor-1.0.7/debian/patches/cross.patch: unified diff output, ASCII text data/survivor-1.0.7/debian/patches/series: ASCII text data/survivor-1.0.7/debian/rules: a /usr/bin/make -f script, ASCII text executable data/survivor-1.0.7/debian/salsa-ci.yml: ASCII text data/survivor-1.0.7/debian/source/format: ASCII text data/survivor-1.0.7/debian/survivor.install: ASCII text data/survivor-1.0.7/debian/tests/control: ASCII text data/survivor-1.0.7/debian/tests/run-unit-test: Bourne-Again shell script, ASCII text executable data/survivor-1.0.7/debian/upstream/metadata: ASCII text data/survivor-1.0.7/debian/watch: ASCII text data/survivor-1.0.7/.pc/.version: ASCII text data/survivor-1.0.7/.pc/.quilt_patches: ASCII text data/survivor-1.0.7/.pc/.quilt_series: ASCII text data/survivor-1.0.7/.pc/applied-patches: ASCII text data/survivor-1.0.7/.pc/cross.patch/Debug/makefile: makefile script, ASCII text data/survivor-1.0.7/.pc/cross.patch/Debug/src/analysis_sv/subdir.mk: ASCII text data/survivor-1.0.7/.pc/cross.patch/Debug/src/convert/subdir.mk: ASCII text data/survivor-1.0.7/.pc/cross.patch/Debug/src/merge_vcf/subdir.mk: ASCII text data/survivor-1.0.7/.pc/cross.patch/Debug/src/phasing/subdir.mk: ASCII text data/survivor-1.0.7/.pc/cross.patch/Debug/src/scrup_vcf/subdir.mk: ASCII text data/survivor-1.0.7/.pc/cross.patch/Debug/src/simulator/subdir.mk: ASCII text 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