data/t-coffee-13.41.0.28bdc39+dfsg/README: ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/mcoffee/dna_matrix.scr: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/mcoffee/blosum80.mat: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/mcoffee/dna_diag_prob_150_exp_110000: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/mcoffee/dna_diag_prob_250_exp_110000: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/mcoffee/dna_diag_prob_100_exp_550000: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/mcoffee/mix80.mod: data data/t-coffee-13.41.0.28bdc39+dfsg/mcoffee/BLOSUM75.diag_prob_t2: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/mcoffee/blosum80_trunc.mat: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/mcoffee/dna_diag_prob_100_exp_220000: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/mcoffee/BLOSUM75.scr: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/mcoffee/hmmtop.arch: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/mcoffee/New_KS.267.seq: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/mcoffee/BLOSUM90.scr: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/mcoffee/dna_diag_prob_100_exp_110000: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/mcoffee/dna_diag_prob_100_exp_330000: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/mcoffee/BLOSUM.scr: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/mcoffee/New_KS.267.obs: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/mcoffee/dna_diag_prob_200_exp_110000: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/mcoffee/BLOSUM.diag_prob_t10: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/mcoffee/hmmtop.psv: ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small_prf1.template_list: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/test_lib.tc_lib: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/profile_aln.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/g5.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/profile2_pdb2.fasta: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/hmgl_trybr.tmp: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/hmgb_chite.prf: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/mocca: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/three_pdb.fasta: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small.template: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_3Dseq2.dnd: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_3Dseq2.fasta: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_aln1.tc_lib: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/4YM9A.pdb: Protein Data Bank data, ID Code 4YM9, 06-MAR-15 data/t-coffee-13.41.0.28bdc39+dfsg/example/hmgl_wheat.prf: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ24.pdb: Protein Data Bank data, ID Code 3IJ2, 03-AUG-09 data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases2_small.dnd: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/test.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1_pdb2.template_list: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/1PPG.pdb: Protein Data Bank data, ID Code 1PPG, 24-OCT-91 data/t-coffee-13.41.0.28bdc39+dfsg/example/b30.aln.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1.tm_html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_dnaseq3.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/luke_skywalker.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/c18orf19.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1_tree.nwk: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/cache.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/process_list.pl: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/three_pdb_two_seq.fasta: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_3Dseq2.struc_tree.list: ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases1_small.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZPRB.pdb: Protein Data Bank data, ID Code 2ZPR, 28-JUL-08 data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_rnaseq2.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_3Dseq1.struc_tree.list: ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_rnaseq2.stk: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_lib3: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small_pdb2.template_list: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/1FY3A.pdb: Protein Data Bank data, ID Code 1FY3, 28-SEP-00 data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_prot_thread.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/clustal_text: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_rnaseq2.cons.stk: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_rnaseq1_rfold1.template_list: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/4KGAB.pdb: Protein Data Bank data, ID Code 4KGA, 29-APR-13 data/t-coffee-13.41.0.28bdc39+dfsg/example/three_pdb_two_seq.dnd: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/prf1_1.dnd: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/g15.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/4Q2KD.pdb: Protein Data Bank data, ID Code 4Q2K, 09-APR-14 data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small.clustalw: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY4.pdb: Protein Data Bank data, ID Code 2HEY, 22-JUN-06 data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU12.pdb: Protein Data Bank data, ID Code 1XU1, 25-OCT-04 data/t-coffee-13.41.0.28bdc39+dfsg/example/hmgt_mouse.tmp: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_aln1_1.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/struc2.pdb: Protein Data Bank data, ID Code 4APE, 09-JUN-86 data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1.tcs_residue_filter3: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ3.pdb: Protein Data Bank data, ID Code 3ALQ, 06-AUG-10 data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1.score_csv: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/wublast.pl: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/stdout.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/profile_aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1_tmp1.template_list: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/han_solo: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/han_solo.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_dna_thread.fa: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/1XU21.pdb: Protein Data Bank data, ID Code 1XU2, 25-OCT-04 data/t-coffee-13.41.0.28bdc39+dfsg/example/1AE5A.pdb: Protein Data Bank data, ID Code 1AE5, 05-MAR-97 data/t-coffee-13.41.0.28bdc39+dfsg/example/b11.cache: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/lalign_id_pair_seq1.tc_lib: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases2_small.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_large.code_name: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases2_small.fasta: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1.dnd: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.species: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/blastpgp.pl: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/three_cdna.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small_g10.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/three_pdb.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXTA.pdb: Protein Data Bank data, ID Code 1EXT, 03-JUL-96 data/t-coffee-13.41.0.28bdc39+dfsg/example/1GVZA.pdb: Protein Data Bank data, ID Code 1GVZ, 28-FEB-02 data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ22.pdb: Protein Data Bank data, ID Code 3IJ2, 03-AUG-09 data/t-coffee-13.41.0.28bdc39+dfsg/example/three_pdb.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1_aln2.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small.fasta~: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_dnaseq3.tc_lib: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/c18orf19_chipseq.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/b30.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1_pdb1.template_list: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/1OQE1.pdb: Protein Data Bank data, ID Code 1OQE, 07-MAR-03 data/t-coffee-13.41.0.28bdc39+dfsg/example/c18orf19.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/dna.filter: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.template_file: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1_prf1.template_list: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/three_cdna.dnd: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/blast_xml2fasta_aln.pl: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_3Dseq1.struc_tree.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/fasta_aln2fasta_aln_unique_name.pl: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/dalilite.pl: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/ncbiblast_lwp.pl: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/nature_protocol.pl: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_aln1_1.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT4.pdb: Protein Data Bank data, ID Code 1EXT, 03-JUL-96 data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small_pdb1.template_list: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1.score_ps: PostScript document text conforming DSC level 2.0 data/t-coffee-13.41.0.28bdc39+dfsg/example/1AZZB.pdb: Protein Data Bank data, ID Code 1AZZ, 24-NOV-97 data/t-coffee-13.41.0.28bdc39+dfsg/example/prf1.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/outaln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/color_dnaseq3_lib.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small.template~: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2UC.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_dnaseq1.dnd: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/tree.dnd: ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/three_cdna.fasta: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small.expanded_fasta_aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_3Dseq1.struc_tree.consensus: ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_lib3.tc_lib: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.contact_lib.list: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/rnapdb2protpdb.pl: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/blast_aln2fasta_aln.pl: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_rnaseq1.dnd: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.aln.list: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/2EEKA.pdb: Protein Data Bank data, ID Code 2EEK, 15-FEB-07 data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1_all.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ1.pdb: Protein Data Bank data, ID Code 3ALQ, 06-AUG-10 data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1_color.list: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/three_pdb_two_seq.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_chain.fasta: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/ph_tree_scan.txt: empty data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1.aln.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_aln1.score_ascii: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/chewbacca.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1_color.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_large.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small.msf: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_aln1_1.score_ascii: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_dnaseq1.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/profile1_pdb1.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/slow_pair_seq1.tc_lib: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_aln1.msf: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/group_3Dseq1.fasta: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_pair.fasta: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.pdb: Protein Data Bank data, ID Code 3V2U, 12-DEC-11 data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_prot_thread.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/dna.replicates: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/g0.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/extract_from_pdb: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_3Dseq1.fasta: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_rnaseq2.tcoffee.stk: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/profile1_pdb1.fasta: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_3Dseq2.struc_tree.consensus: ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V3.pdb: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1.msf: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_3Dseq2.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases1_small.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/generic_method.tc_method: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_lib2.tc_lib: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_large.fasta: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1_tree_upgma.nwk: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_3Dseq1.fake: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/fasta_seq2consan_aln.pl: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/hmgb_chite.tmp: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small.dnd: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT1.pdb: Protein Data Bank data, ID Code 1EXT, 03-JUL-96 data/t-coffee-13.41.0.28bdc39+dfsg/example/1OP8F.pdb: Protein Data Bank data, ID Code 1OP8, 05-MAR-03 data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_dnaseq2.cache: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/block1.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1.tc_lib: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/profile2_pdb2.dnd: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/c18orf19.dnd: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_3Dseq2.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small.b62_aln.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1.tcs_weighted: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.pdb: Protein Data Bank data, ID Code 1CMS, 12-OCT-89 data/t-coffee-13.41.0.28bdc39+dfsg/example/three_pdb_two_seq_pdb1.template_list: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.template: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/msa2bootstrap.pl: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases2_small.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_aln1_2.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/prf2.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases1_small.fasta: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/excel2fasta.pl: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_lib3.tc_lib02: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sv.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1.score_pdf: PDF document, version 1.4 data/t-coffee-13.41.0.28bdc39+dfsg/example/count.pl: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1.tcs_replicate_100: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/b11.tcmafft: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_rnaseq2.cw.stk: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/hmgt_mouse.prf: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_prot_thread.dnd: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/b11.score_ascii: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/out.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases1_small.dnd: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/1NN6.pdb: Protein Data Bank data, ID Code 1NN6, 12-JAN-03 data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_aln5.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1_single.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/hmgl_wheat.tmp: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/b11.fa: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_prot_thread.fa: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/charge_relay_lib.tc_lib: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2UD.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_rnaseq1.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/b80.aln.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ21.pdb: Protein Data Bank data, ID Code 3IJ2, 03-AUG-09 data/t-coffee-13.41.0.28bdc39+dfsg/example/block2.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_dnaseq1.fasta: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_prot_thread.score_ascii: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/out_aln.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/clustalw_method.tc_method: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/t_coffee_dpa: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/1FI8.pdb: Protein Data Bank data, ID Code 1FI8, 03-AUG-00 data/t-coffee-13.41.0.28bdc39+dfsg/example/sv_muscle.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2UB.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/install.pl: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/three_pdb_two_seq.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/3G01B.pdb: Protein Data Bank data, ID Code 3G01, 27-JAN-09 data/t-coffee-13.41.0.28bdc39+dfsg/example/outaln.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/b80.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small.fasta_aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/cache.seq: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/5ABWA.pdb: Protein Data Bank data, ID Code 5ABW, 10-AUG-15 data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1.tcs_residue_lower4: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1.clustalw: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY1.pdb: Protein Data Bank data, ID Code 2HEY, 22-JUN-06 data/t-coffee-13.41.0.28bdc39+dfsg/example/Ssample_aln1.dnd: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA1.pdb: Protein Data Bank data, ID Code 1JMA, 17-JUL-01 data/t-coffee-13.41.0.28bdc39+dfsg/example/clustal_text.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/color_cons_box.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEYR.pdb: Protein Data Bank data, ID Code 2HEY, 22-JUN-06 data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1.fasta: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT3.pdb: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small.fasta: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/three_pdb.dnd: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/RNAplfold2tclib.pl: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/hmgl_trybr.prf: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1.ts_html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1.tcs_column_filter3: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sv.dnd: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/alirna.ps: PostScript document text conforming DSC level 3.0, type EPS data/t-coffee-13.41.0.28bdc39+dfsg/example/2HEY2.pdb: Protein Data Bank data, ID Code 2HEY, 22-JUN-06 data/t-coffee-13.41.0.28bdc39+dfsg/example/fasta_seq2hmmtop_fasta.pl: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ2X.pdb: Protein Data Bank data, ID Code 3IJ2, 03-AUG-09 data/t-coffee-13.41.0.28bdc39+dfsg/example/test.tc_lib: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_aln1.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/make_license.pl: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_param_file.param: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ2.pdb: Protein Data Bank data, ID Code 3ALQ, 06-AUG-10 data/t-coffee-13.41.0.28bdc39+dfsg/example/1JMA2.pdb: Protein Data Bank data, ID Code 1JMA, 17-JUL-01 data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_profile1_1.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_3Dseq1.struc_tree.consense_output: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/1MZDA.pdb: Protein Data Bank data, ID Code 1MZD, 07-OCT-02 data/t-coffee-13.41.0.28bdc39+dfsg/example/profile1_pdb1_1.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1_blosum62.score_ascii: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/wublast_lwp.pl: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/1D4V2.pdb: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/prf3.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2U.contact_lib: ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_dnaseq1.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1.score_html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1_lib1.tc_lib: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_3Dseq2.struc_tree.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/two_profiles.template_file: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sv.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_profile1.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_3Dseq1.template: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/color_dnaseq3.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/5FCRD.pdb: Protein Data Bank data, ID Code 5FCR, 15-DEC-15 data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQR.pdb: Protein Data Bank data, ID Code 3ALQ, 06-AUG-10 data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/struc3.pdb: Protein Data Bank data, ID Code 3APP, 27-NOV-90 data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_lib1.tc_lib: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_dnaseq2.fasta: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/CCsed.script: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/3ALQ4.pdb: Protein Data Bank data, ID Code 3ALQ, 06-AUG-10 data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_lib1.mocca_lib: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/3IJ23.pdb: Protein Data Bank data, ID Code 3IJ2, 03-AUG-09 data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_rnaseq2.alifold: ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1_tree_nj.nwk: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/rec_sum.pl: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_3Dseq1.mafftnewick: ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/clean_cache.pl: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases1_small.msf: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/combined_profiles.aln.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/2RDLB.pdb: Protein Data Bank data, ID Code 2RDL, 24-SEP-07 data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_aln3.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.dnd: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_aln1.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/out.tab: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/prf1.dnd: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/out.ascii: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_oneseq.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_oneseq.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_profile2.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_large.dnd: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/1EXT2.pdb: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_rnaseq1.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_tree2.dnd: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_dnaseq3.cache: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_profile1_1.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/profile2_pdb2.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/three_cdna.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1.msf_aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_rnaseq1.fasta: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/3V2UA.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_large.muscle: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases1_small.clustalw: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/p350.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/any_file2unix_file.pl: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_3Dseq1.tree: ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1.list: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1_tree_sar.nwk: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/chewbacca: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_large.coded.fasta: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/2QXJA.pdb: Protein Data Bank data, ID Code 2QXJ, 11-AUG-07 data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_3Dseq1.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/t_coffee_dpa2: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/color_dnaseq3.pdf: PDF document, version 1.4 data/t-coffee-13.41.0.28bdc39+dfsg/example/prf1.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/sv.fasta: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1.score_ascii: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/combined_profiles.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/luke_skywalker.dnd: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/g10.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/struc1.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_oneseq.fasta: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/1EUFA.pdb: Protein Data Bank data, ID Code 1EUF, 14-APR-00 data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_large.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_tree1.dnd: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1_one-res.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small.b62_aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_3Dseq2.struc_tree.consense_output: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/b11.tcmafft.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/b11.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_aln2.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1.expanded_fasta_aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/fasta_seq2RNAplfold_templatefile.pl: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_3Dseq1.tc_lib: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/profile1_pdb1_1.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/b11.dnd: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_list1.lib_list: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/2ZKSA.pdb: Protein Data Bank data, ID Code 2ZKS, 28-MAR-08 data/t-coffee-13.41.0.28bdc39+dfsg/example/color_cons.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/c18orf19.fa: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/clustalw_aln2fasta_aln.pl: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/1SGFX.pdb: Protein Data Bank data, ID Code 1SGF, 08-AUG-97 data/t-coffee-13.41.0.28bdc39+dfsg/example/msf_aln2fasta_aln.pl: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/luke_skywalker.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1_ssp.template: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/2RPJ1.pdb: Protein Data Bank data, ID Code 2RPJ, 19-MAY-08 data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small_g10.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/test.aln.html: HTML document, ASCII text, with very long lines data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases1_small.fasta_aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_dnaseq2.aln: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small_dna.fasta: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_3Dseq2.template: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/proteases_small.pir_seq: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/sample_seq1_aln2.msf: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/example/newick2name_list.pl: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/example/tc_generic_method.pl: Perl script text executable data/t-coffee-13.41.0.28bdc39+dfsg/license.txt: ISO-8859 text data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/dev1_lib_header.h: C source, ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/fastal/iteration.c: C source, ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/fastal/parttree.h: ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/fastal/fastal_opt_parsing.c: C source, ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/fastal/fastal_opt_parsing.h: C source, ASCII text data/t-coffee-13.41.0.28bdc39+dfsg/t_coffee_source/fastal/scoring.c: C source, ASCII text 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