Flawfinder version 2.0.10, (C) 2001-2019 David A. Wheeler. Number of rules (primarily dangerous function names) in C/C++ ruleset: 223 Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/PDB2discover.C Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/PDBChecker.C Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/SASAreas.C Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/TUTORIAL/bounding_box.C Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/TUTORIAL/glBoundingBoxModel.h Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/TUTORIAL/string_tutorial.C Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/TUTORIAL/tutorial1.C Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/TUTORIAL/tutorial2.C Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/TUTORIAL/tutorial3.C Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/addHydrogens.C Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/amberEnergy.C Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/assign_chemical_shifts.C Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/bindingEnergy.C Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/create_random_numbers.C Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/energy.C Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/ramachandran.C Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/constants.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/debug.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/exception.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/global.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/hash.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/init.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/macros.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/parserDefinitions.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/rtti.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/version.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/XDRPersistenceManager.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/autoDeletable.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/baseFunctor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/baseIterator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/benchmark.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/classTest.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/client.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/comparator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/embeddable.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/enumerator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/factory.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/forwardIterator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/molecularInformation.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/moleculeObjectCreator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/objectCreator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/predicate.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/preferencesObject.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/processor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/selectable.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/stdIteratorWrapper.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/textPersistenceManager.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/timeStamp.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/visitor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/GRAPH/graphAlgorithms.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/GRAPH/molecularGraph.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/GRAPH/treeWidth.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/contour.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/contourLine.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/contourSurface.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/forEach.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashMap.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashSet.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/list.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/quadruple.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/regularData1D.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/regularData2D.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/regularData3D.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/regularExpression.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/string.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/stringHashMap.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/stringHashSet.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/triple.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformation.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformationSet.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/constraints.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/dockResult.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/dockingAlgorithm.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/flexDefinition.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/flexibleMolecule.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/gridAnalysis.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/poseClustering.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/receptor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/result.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/sideChainOptimizer.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/staticLigandFragment.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/structurePreparer.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/GENETICDOCK/dockProblem.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/GENETICDOCK/evolutionaryDocking.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/GENETICDOCK/genes.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/GENETICDOCK/geneticAlgorithm.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/GENETICDOCK/geneticIndividual.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/GENETICDOCK/parameter.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/GENETICDOCK/rotateBond.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/GENETICDOCK/rotateBonds.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/IMGDOCK/IMGDock.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/geometricFit.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/atomicContactEnergy.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/composedEnergyProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/coulomb.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/distanceCoulomb.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CCP4File.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/DCDFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/DSN6File.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/GAMESSDatFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/GAMESSLogFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/HINFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/HMOFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/INIFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/JCAMPFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/KCFFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOL2File.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOLFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOPACInputFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOPACOutputFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/NMRStarFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBInfo.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBRecords.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/SCWRLRotamerFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/SDFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/TRRFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/XYZFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/amiraMeshFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/antechamberFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/bruker1DFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/bruker2DFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/commandlineParser.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/genericMolFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/lineBasedFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/molFileFactory.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/paramFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameters.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/pubchemDownloader.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/resourceFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/trajectoryFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/trajectoryFileFactory.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/PDBAtom.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/PDBAtomIterator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/PTE.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainerIterator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bondIterator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/chain.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/chainIterator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expression.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionParser.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionPredicate.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionTree.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/extractors.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragmentIterator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/global.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecularInteractions.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/nucleicAcid.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/nucleicAcidIterator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/nucleotide.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/nucleotideIterator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/predicate.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/protein.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/proteinIterator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residueIterator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructureIterator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/selector.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/standardPredicates.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/FFT1D.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/FFT2D.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/FFT3D.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/analyticalGeometry.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/angle.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/box3.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/circle3.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/common.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/complex.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/cubicSpline1D.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/cubicSpline2D.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/fftwCommon.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/function.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/line3.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/matrix44.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/numericalIntegrator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/parsedFunction.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/piecewiseFunction.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/piecewisePolynomial.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/plane3.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/quaternion.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/rombergIntegrator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/simpleBox3.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/sphere3.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/surface.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector2.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector4.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/GAFFCESParser.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/GAFFTypeProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amber.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberBend.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberNonBonded.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberStretch.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/AMBER/amberTorsion.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmm.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmBend.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmImproperTorsion.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmStretch.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/CHARMM/charmmTorsion.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/assignTypes.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/atomVector.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/bendComponent.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/chargeRuleProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceField.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/forceFieldComponent.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/gradient.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/periodicBoundary.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/radiusRuleProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/ruleEvaluator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/ruleProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/snapShot.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/snapShotManager.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/stretchComponent.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/support.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/typeRuleProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/COMMON/typenameRuleProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MDSIMULATION/canonicalMD.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MDSIMULATION/microCanonicalMD.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MDSIMULATION/molecularDynamics.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/conjugateGradient.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/lineSearch.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/shiftedLVMM.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/steepestDescent.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MINIMIZATION/strangLBFGS.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/atomTypes.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/charmmEEF1.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/forceFieldParameters.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/lennardJones.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/potential1210.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/quadraticAngleBend.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/quadraticBondStretch.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/quadraticImproperTorsion.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/residueTorsions.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MOLMEC/PARAMETER/templates.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/EFShiftProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/HBondShiftProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/anisotropyShiftProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/clearShiftProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/createSpectrumProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/empiricalHSShiftProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/experiment.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/haighMallionShiftProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/johnsonBoveyShiftProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/peak.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/peakList.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/randomCoilShiftProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModel1D.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModel2D.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/shiftModule.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/NMR/spectrum.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/PLUGIN/BALLPlugin.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/PLUGIN/pluginHandler.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/PLUGIN/pluginManager.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/PYTHON/EXTENSIONS/pyBALLSipHelper.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/PYTHON/EXTENSIONS/pyColorRGBAVector.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/PYTHON/EXTENSIONS/pyCompositeList.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/PYTHON/EXTENSIONS/pyConstant.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/PYTHON/EXTENSIONS/pyDatasetVector.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/PYTHON/EXTENSIONS/pyIndexList.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/PYTHON/EXTENSIONS/pyListHelper.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/PYTHON/EXTENSIONS/pyUnaryProcessors.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/PYTHON/pyCAPIKernel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/PYTHON/pyInterpreter.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/PYTHON/pyKernel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/PYTHON/pyServer.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/Model.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/NMRDescriptors.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/QSARData.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/allModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/aromaticityProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/automaticModelCreator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/bayesModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/classificationValidation.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/common.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/configIO.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityBase.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/connectivityDescriptors.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/descriptor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/exception.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/featureSelection.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/gpModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kernelModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/knnModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kpcrModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/kplsModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/latentVariableModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/ldaModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/libsvmModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/linearModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/logitModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/mlrModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/modelFactory.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nBModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/nonlinearModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/oplsModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/partialChargeBase.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/partialChargeDescriptors.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/partialChargeProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/pcrModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/plsModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/registry.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/regressionValidation.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/ringPerceptionProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/rrModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleBase.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/simpleDescriptors.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/snBModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/statistics.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/surfaceBase.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/surfaceDescriptors.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/svmModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/svrModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/QSAR/validation.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/baseFunction.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffGridBasedScoring.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/diffScoringFunction.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/fermiBaseFunction.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/gridBasedScoring.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/linearBaseFunction.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/rescorer.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoreGridSet.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringComponent.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringFunction.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMMON/scoringOptimizer.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/CHPI.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/CHPISlick.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PB.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/PLP.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/advElectrostatic.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/aromaticRingStacking.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/burialDepth.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/buriedPolar.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/electrostatic.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/fragmentationalSolvation.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/fresnoTypes.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/hydrogenBond.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/hydrogenBondSlick.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/lipophilic.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/nonpolarSolvation.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/polarSolvation.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/polarity.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/rotationalEntropy.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/solvation.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/vanDerWaals.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/MMScoring.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PBScoring.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/PLPScoring.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/amberEvaluation.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedMM.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/gridedPLP.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/randomEvaluation.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring1D.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring3D.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/rescoring4D.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/slickEnergy.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SCORING/FUNCTIONS/slickScore.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/PCMCavFreeEnergyProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/claverieParameter.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/electrostaticPotentialCalculator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/generalizedBornCase.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/molecularSurfaceGrid.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/ooiEnergy.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/pair6_12InteractionEnergyProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/pair6_12RDFIntegrator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/pairExpInteractionEnergyProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/pairExpRDFIntegrator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/pierottiCavFreeEnergyProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/poissonBoltzmann.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/reissCavFreeEnergyProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/solventDescriptor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/solventParameter.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SOLVATION/uhligCavFreeEnergyProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/ILPBondOrderStrategy.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/DNAMutator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/HBondProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/RDFIntegrator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/RDFParameter.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/RDFSection.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/RMSDMinimizer.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/RSEdge.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/RSFace.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/RSVertex.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/SASEdge.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/SASFace.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/SASVertex.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/SESEdge.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/SESFace.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/SESVertex.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/UCK.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/addHydrogenProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/analyticalSES.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/assignBondOrderProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/atomBijection.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/atomTyper.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/binaryFingerprintMethods.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/bindingPocketProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/buildBondsProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/connectedComponentsProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/defaultProcessors.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/disulfidBondProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/fragmentDB.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/geometricProperties.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/geometricTransformations.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/graphEdge.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/graphFace.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/graphVertex.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/hybridisationProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/kekulizer.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/logP.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/molecularSimilarity.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/mutator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/nucleotideMapping.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/numericalSAS.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/peptideBuilder.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/peptideCapProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/peptides.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/rGroupAssembler.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/radialDistributionFunction.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/reconstructFragmentProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/reducedSurface.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/residueChecker.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/residueRotamerSet.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/ringAnalyser.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/rotamerLibrary.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/sdGenerator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/secondaryStructureProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/sideChainPlacementProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/simpleMolecularGraph.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/smartsMatcher.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/smartsParser.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/smilesParser.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/solventAccessibleSurface.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/solventExcludedSurface.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/structureMapper.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/surfaceProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/triangle.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/triangleEdge.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/trianglePoint.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/triangulatedSAS.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/triangulatedSES.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/STRUCTURE/triangulatedSurface.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/MPISupport.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/binaryFileAdaptor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/directory.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/file.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/fileSystem.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/mutex.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/networking.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/path.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/simpleDownloader.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/sysinfo.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/SYSTEM/timer.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DATATYPE/colorExtensions.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DATATYPE/colorHSV.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DATATYPE/colorMap.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DATATYPE/colorRGBA.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DATATYPE/colorUnit.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DATATYPE/colorUnitHue.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DATATYPE/dataset.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DATATYPE/raytraceableGrid.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DATATYPE/standardDatasets.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DATATYPE/vertex1.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DATATYPE/vertex2.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/FDPBDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/MMFF94ConfigurationDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/PTEDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/amberConfigurationDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/assignBondOrderConfigurationDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/assignBondOrderResultsDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/atomOverview.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/bondProperties.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/charmmConfigurationDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/clippingDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/coloringSettingsDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/compositeProperties.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/contourSurfaceDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/displayProperties.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/dockDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/dockProgressDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/dockResultDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/downloadElectronDensity.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/downloadPDBFile.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/editSettings.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/editSingleShortcut.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/exportGeometryDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/fieldLinesDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/generateCrystalDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/geometricFitDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/gridVisualizationDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/labelDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/lightSettings.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/mainControlPreferences.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/materialSettings.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/minimizationDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/modelSettingsDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/modifyRepresentationDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/molecularDynamicsDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/molecularFileDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/networkPreferences.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/openSavePreferences.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/parsedFunctionDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/peptideDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/pluginDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/preferences.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/pubchemDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/pythonSettings.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/raytraceableContourSurfaceDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/serverPreferences.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/setCamera.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/setClippingPlane.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/shortcutDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/snapShotVisualisation.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/stageSettings.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/stereoSettingsDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/DIALOGS/undoManagerDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/INPUT/buttonEvent.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/INPUT/deviceEvent.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/INPUT/fakeDriver.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/INPUT/headTrackingEvent.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/INPUT/inputDeviceDriver.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/INPUT/inputPlugin.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/INPUT/motionTrackingEvent.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/INPUT/notificationEvent.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/INPUT/transformationEvent6D.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/KERNEL/MODES/editMode.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/KERNEL/MODES/interactionMode.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/KERNEL/MODES/interactionModeManager.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/KERNEL/MODES/moveMode.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/KERNEL/MODES/pickingMode.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/KERNEL/MODES/rotateMode.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/KERNEL/UIOperationMode.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/KERNEL/clippingPlane.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/KERNEL/common.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/KERNEL/compositeManager.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/KERNEL/connectionObject.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/KERNEL/editOperation.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/KERNEL/geometricObject.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/KERNEL/iconLoader.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/KERNEL/mainControl.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/KERNEL/message.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/KERNEL/modelInformation.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/KERNEL/modularWidget.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/KERNEL/preferencesEntry.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/KERNEL/representation.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/KERNEL/representationManager.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/KERNEL/serverWidget.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/KERNEL/shortcutRegistry.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/KERNEL/snapshotManagerInterface.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/KERNEL/stage.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/KERNEL/threads.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/MODELS/HBondModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/MODELS/atomBondModelBaseProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/MODELS/backboneModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/MODELS/ballAndStickModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/MODELS/cartoonModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/MODELS/colorByGridProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/MODELS/colorProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/MODELS/fieldLineCreator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/MODELS/forceModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/MODELS/labelModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/MODELS/lineModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/MODELS/modelProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/MODELS/standardColorProcessor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/MODELS/surfaceModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/MODELS/vanDerWaalsModel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/PLUGIN/VIEWPlugin.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/PLUGIN/inputDevPluginHandler.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/PLUGIN/modularWidgetPlugin.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/PLUGIN/modularWidgetPluginHandler.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/PRIMITIVES/box.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/PRIMITIVES/disc.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/PRIMITIVES/gridVisualisation.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/PRIMITIVES/label.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/PRIMITIVES/line.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/PRIMITIVES/mesh.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/PRIMITIVES/multiLine.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/PRIMITIVES/point.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/PRIMITIVES/quadMesh.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/PRIMITIVES/simpleBox.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/PRIMITIVES/sphere.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/PRIMITIVES/tube.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/PRIMITIVES/twoColoredLine.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/PRIMITIVES/twoColoredTube.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/RENDERING/RENDERERS/POVRenderer.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/RENDERING/RENDERERS/STLRenderer.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/RENDERING/RENDERERS/VRMLRenderer.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/RENDERING/RENDERERS/XML3DRenderer.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/RENDERING/RENDERERS/bufferedRenderer.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/RENDERING/RENDERERS/cudaVolumeRenderer.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/RENDERING/RENDERERS/glRenderer.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/RENDERING/RENDERERS/raytracingRenderer.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/RENDERING/RENDERERS/renderer.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/RENDERING/RENDERERS/rtfactRenderer.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/RENDERING/RENDERERS/tilingRenderer.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/RENDERING/camera.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/RENDERING/glDisplayList.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/RENDERING/glOffscreenTarget.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/RENDERING/glRenderWindow.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/RENDERING/pixelFormat.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/RENDERING/renderSetup.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/RENDERING/renderTarget.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/RENDERING/renderWindow.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/RENDERING/vertexBuffer.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/WIDGETS/HTMLPage.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/WIDGETS/HTMLView.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/WIDGETS/SDWidget.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/WIDGETS/colorButton.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/WIDGETS/colorTable.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/WIDGETS/datasetControl.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/WIDGETS/dockWidget.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/WIDGETS/dockingController.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/WIDGETS/fileObserver.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/WIDGETS/genericControl.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/WIDGETS/geometricControl.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/WIDGETS/gridColorWidget.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/WIDGETS/helpViewer.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/WIDGETS/hotkeyTable.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/WIDGETS/logView.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/WIDGETS/molecularControl.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/WIDGETS/molecularStructure.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/WIDGETS/propertyEditor.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/WIDGETS/pyWidget.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/WIDGETS/scene.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/WIDGETS/shortcutTableView.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/WIDGETS/testFramework.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/VIEW/WIDGETS/textEditorWidget.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/XRAY/crystalGenerator.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/XRAY/crystalInfo.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/XRAY/spaceGroupParameters.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/common.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/concept.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/datatype.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/energy.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/format.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/kernel.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/maths.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/molmec.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/solvation.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/structure.h Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/system.h Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/AMBER/files.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/AMBER/files.h Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/AMBER/global.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/AMBER/global.h Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/AMBER/main.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/BALLVIEW/demoTutorialDialog.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/BALLVIEW/demoTutorialDialog.h Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/BALLVIEW/icons.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/BALLVIEW/icons.h Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/BALLVIEW/main.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/BALLVIEW/mainframe.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/BALLVIEW/mainframe.h Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/DCD2PNG/main.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/DCD2PNG/mainframe.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/DCD2PNG/mainframe.h Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/MMFF94/compareForces.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/MMFF94/readMMFF94TestFile.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/MMFF94/splitMMFFTestSuiteMolFiles.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/MMFF94/splitMMFFTestSuiteOptiFiles.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/MMFF94/testKekulizer.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/MMFF94/writeMMFF.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/NMRVIEW/nmrview.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/PB/assignment.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/PB/assignment.h Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/PB/global.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/PB/global.h Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/PB/main.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/PB/reading.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/PB/reading.h Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/AddMissingAtoms.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/AntitargetRescorer.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/AutoModel.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/BindingDBCleaner.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/BondOrderAssigner.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/CalculateBindingFreeEnergy.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/CalculateEnergy.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/CalculateSolvationFreeEnergy.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/CombiLibGenerator.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/ConstraintsFinder.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/Converter.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/CrystalGenerator.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/DockPoseClustering.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/DockResultMerger.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/EvenSplit.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/ExtractClustersFromWardTree.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/ExtractProteinChains.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/ExtractProteinSequence.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/FeatureSelector.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/FingerprintSimilarityClustering.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/FingerprintSimilaritySearch.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/GridBuilder.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/IMGDock.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/InputPartitioner.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/InputReader.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/InteractionConstraintDefiner.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/LigCheck.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/Ligand3DGenerator.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/LigandFileSplitter.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/ModelCreator.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/MolCombine.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/MolDepict.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/MolFilter.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/MolPredictor.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/MolecularFileConverter.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/PDBCutter.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/PDBDownload.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/PDBRMSDCalculator.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/PartialChargesCopy.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/PeptideBuilder.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/PocketDetector.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/PoseIndices2PDB.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/Predictor.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/PropertyModifier.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/PropertyPlotter.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/ProteinCheck.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/ProteinProtonator.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/RMSDCalculator.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/RemoveWater.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/ResidueChecker.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/SLICK.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/ScoreAnalyzer.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/SeparateMolecules.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/SideChainGridBuilder.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/SimilarityAnalyzer.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/SimpleRescorer.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/SpatialConstraintDefiner.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/TaGRes-train.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/TaGRes.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/Trajectory2RigidTransformation.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/TrajectoryFile2PDBSplitter.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/Validator.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/WaterFinder.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/rescoring_common.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/TOOLS/version.h Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/UTILITIES/BALLVIEWClient.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/UTILITIES/add_hydrogens.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/UTILITIES/assign_bond_orders.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/UTILITIES/assign_charges_from_rules.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/UTILITIES/assign_positions_from_template.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/UTILITIES/assign_radii_from_rules.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/UTILITIES/assign_typenames_from_rules.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/UTILITIES/atomtyper.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/UTILITIES/calculate_RMSD.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/UTILITIES/clip_protein_around_ligand.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/UTILITIES/compute_docking_RMSD.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/UTILITIES/dcd2dcd.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/UTILITIES/export_fragment.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/UTILITIES/file_converter.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/UTILITIES/geometricFit_slave.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/UTILITIES/hin2mol2.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/UTILITIES/pdb2amber_naming.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/UTILITIES/pdb2dcd.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/UTILITIES/pdb2hin.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/UTILITIES/protein_mapper.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/UTILITIES/reconstruct_fragment.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/UTILITIES/rigid_docking.C Examining data/ball-1.5.0+git20180813.37fc53c/source/APPLICATIONS/UTILITIES/solvent_accessibility.C Examining data/ball-1.5.0+git20180813.37fc53c/source/BENCHMARKS/AmberFF_bench.C Examining data/ball-1.5.0+git20180813.37fc53c/source/BENCHMARKS/CharmmFF_bench.C Examining data/ball-1.5.0+git20180813.37fc53c/source/BENCHMARKS/CompositeClone_bench.C Examining data/ball-1.5.0+git20180813.37fc53c/source/BENCHMARKS/CompositeCreation_bench.C Examining data/ball-1.5.0+git20180813.37fc53c/source/BENCHMARKS/ContourSurface_bench.C Examining data/ball-1.5.0+git20180813.37fc53c/source/BENCHMARKS/DataStructures_bench.C Examining data/ball-1.5.0+git20180813.37fc53c/source/BENCHMARKS/FragmentDB_bench.C Examining data/ball-1.5.0+git20180813.37fc53c/source/BENCHMARKS/KernelClone_bench.C Examining data/ball-1.5.0+git20180813.37fc53c/source/BENCHMARKS/KernelCreation_bench.C Examining data/ball-1.5.0+git20180813.37fc53c/source/BENCHMARKS/KernelIteration_bench.C Examining data/ball-1.5.0+git20180813.37fc53c/source/BENCHMARKS/MolmecSupport_bench.C Examining data/ball-1.5.0+git20180813.37fc53c/source/BENCHMARKS/PDB_bench.C Examining data/ball-1.5.0+git20180813.37fc53c/source/BENCHMARKS/PoissonBoltzmann_bench.C Examining data/ball-1.5.0+git20180813.37fc53c/source/BENCHMARKS/Skeleton_bench.C Examining data/ball-1.5.0+git20180813.37fc53c/source/COMMON/constants.C Examining data/ball-1.5.0+git20180813.37fc53c/source/COMMON/exception.C Examining data/ball-1.5.0+git20180813.37fc53c/source/COMMON/hash.C Examining data/ball-1.5.0+git20180813.37fc53c/source/COMMON/init.C Examining data/ball-1.5.0+git20180813.37fc53c/source/COMMON/logStream.C Examining data/ball-1.5.0+git20180813.37fc53c/source/COMMON/rtti.C Examining data/ball-1.5.0+git20180813.37fc53c/source/COMMON/version.C Examining data/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/XDRPersistenceManager.C Examining data/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/autoDeletable.C Examining data/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/client.C Examining data/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/composite.C Examining data/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/embeddable.C Examining data/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/enumerator.C Examining data/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/factory.C Examining data/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/molecularInformation.C Examining data/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/moleculeObjectCreator.C Examining data/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/object.C Examining data/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/objectCreator.C Examining data/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/persistenceManager.C Examining data/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/predicate.C Examining data/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/preferencesObject.C Examining data/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/processor.C Examining data/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/property.C Examining data/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/selectable.C Examining data/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/textPersistenceManager.C Examining data/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/timeStamp.C Examining data/ball-1.5.0+git20180813.37fc53c/source/CONCEPT/visitor.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/GRAPH/graphAlgorithms.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/GRAPH/molecularGraph.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/GRAPH/treeWidth.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/bitVector.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/contourSurface.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/options.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/regularData1D.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/regularData2D.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/regularData3D.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/regularExpression.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/string.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DATATYPE/hashGrid.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DOCKING/COMMON/conformation.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DOCKING/COMMON/conformationSet.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DOCKING/COMMON/constraints.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DOCKING/COMMON/dockResult.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DOCKING/COMMON/dockingAlgorithm.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DOCKING/COMMON/flexDefinition.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DOCKING/COMMON/flexibleMolecule.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DOCKING/COMMON/gridAnalysis.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DOCKING/COMMON/poseClustering.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DOCKING/COMMON/receptor.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DOCKING/COMMON/result.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DOCKING/COMMON/sideChainOptimizer.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DOCKING/COMMON/staticLigandFragment.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DOCKING/COMMON/structurePreparer.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DOCKING/GENETICDOCK/dockProblem.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DOCKING/GENETICDOCK/evolutionaryDocking.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DOCKING/GENETICDOCK/genes.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DOCKING/GENETICDOCK/geneticAlgorithm.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DOCKING/GENETICDOCK/geneticIndividual.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DOCKING/GENETICDOCK/parameter.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DOCKING/GENETICDOCK/rotateBond.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DOCKING/GENETICDOCK/rotateBonds.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DOCKING/IMGDOCK/IMGDock.C Examining data/ball-1.5.0+git20180813.37fc53c/source/DOCKING/geometricFit.C Examining data/ball-1.5.0+git20180813.37fc53c/source/ENERGY/atomicContactEnergy.C Examining data/ball-1.5.0+git20180813.37fc53c/source/ENERGY/composedEnergyProcessor.C Examining data/ball-1.5.0+git20180813.37fc53c/source/ENERGY/coulomb.C Examining data/ball-1.5.0+git20180813.37fc53c/source/ENERGY/distanceCoulomb.C Examining data/ball-1.5.0+git20180813.37fc53c/source/ENERGY/energyProcessor.C Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/BALLAXY/include/BALLaxyInterface.h Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/BALLAXY/include/BALLaxyInterfacePreferences.h Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/BALLAXY/include/BALLaxyPlugin.h Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/BALLAXY/source/BALLaxyInterface.C Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/BALLAXY/source/BALLaxyInterfacePreferences.C Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/BALLAXY/source/BALLaxyPlugin.C Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/JUPYTER/include/jupyterPlugin.h Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/JUPYTER/include/jupyterPreferences.h Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/JUPYTER/include/jupyterServer.h Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/JUPYTER/include/jupyterServerTab.h Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/JUPYTER/include/jupyterTab.h Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/JUPYTER/include/jupyterWidget.h Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/JUPYTER/source/jupyterPlugin.C Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/JUPYTER/source/jupyterPreferences.C Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/JUPYTER/source/jupyterServer.C Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/JUPYTER/source/jupyterServerTab.C Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/JUPYTER/source/jupyterTab.C Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/JUPYTER/source/jupyterWidget.C Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/PRESENTABALL/include/PresentaBALLPlugin.h Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/PRESENTABALL/include/PresentaBALLSettings.h Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/PRESENTABALL/include/PresentaBALLView.h Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/PRESENTABALL/source/PresentaBALLPlugin.C Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/PRESENTABALL/source/PresentaBALLSettings.C Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/PRESENTABALL/source/PresentaBALLView.C Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/SPACENAV/include/spaceNavigatorDriver.h Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/SPACENAV/include/spaceNavigatorPlugin.h Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/SPACENAV/source/spaceNavigatorDriver.C Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/SPACENAV/source/spaceNavigatorPlugin.C Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/VRPN/include/VRPNDriver.h Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/VRPN/include/VRPNPlugin.h Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/VRPN/source/VRPNDriver.C Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/VRPN/source/VRPNPlugin.C Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/VRPNHD/include/VRPNHDDriver.h Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/VRPNHD/include/VRPNHDPlugin.h Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/VRPNHD/source/VRPNHDDriver.C Examining data/ball-1.5.0+git20180813.37fc53c/source/EXTENSIONS/VRPNHD/source/VRPNHDPlugin.C Examining data/ball-1.5.0+git20180813.37fc53c/source/FORMAT/CCP4File.C Examining data/ball-1.5.0+git20180813.37fc53c/source/FORMAT/CIFFile.C Examining data/ball-1.5.0+git20180813.37fc53c/source/FORMAT/DCDFile.C