Flawfinder version 2.0.10, (C) 2001-2019 David A. Wheeler.
Number of rules (primarily dangerous function names) in C/C++ ruleset: 223
Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/PDB2discover.C
Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/PDBChecker.C
Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/SASAreas.C
Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/TUTORIAL/bounding_box.C
Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/TUTORIAL/glBoundingBoxModel.h
Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/TUTORIAL/string_tutorial.C
Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/TUTORIAL/tutorial1.C
Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/TUTORIAL/tutorial2.C
Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/TUTORIAL/tutorial3.C
Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/addHydrogens.C
Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/amberEnergy.C
Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/assign_chemical_shifts.C
Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/bindingEnergy.C
Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/create_random_numbers.C
Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/energy.C
Examining data/ball-1.5.0+git20180813.37fc53c/doc/examples/ramachandran.C
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/constants.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/create.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/debug.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/exception.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/global.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/hash.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/init.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/logStream.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/macros.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/parserDefinitions.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/rtti.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/COMMON/version.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/XDRPersistenceManager.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/autoDeletable.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/baseFunctor.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/baseIterator.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/benchmark.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/bidirectionalIterator.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/classTest.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/client.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/comparator.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/composite.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/embeddable.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/enumerator.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/factory.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/forwardIterator.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/molecularInformation.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/moleculeObjectCreator.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/object.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/objectCreator.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistenceManager.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/persistentObject.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/predicate.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/preferencesObject.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/processor.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/property.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/randomAccessIterator.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/selectable.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/stdIteratorWrapper.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/textPersistenceManager.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/timeStamp.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/visitor.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/GRAPH/graphAlgorithms.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/GRAPH/molecularGraph.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/GRAPH/treeWidth.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/bitVector.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/contour.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/contourLine.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/contourSurface.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/forEach.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashMap.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashSet.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/list.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/options.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/quadruple.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/regularData1D.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/regularData2D.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/regularData3D.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/regularExpression.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/string.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/stringHashMap.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/stringHashSet.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/triple.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DATATYPE/hashGrid.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformation.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/conformationSet.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/constraints.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/dockResult.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/dockingAlgorithm.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/flexDefinition.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/flexibleMolecule.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/gridAnalysis.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/poseClustering.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/receptor.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/result.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/sideChainOptimizer.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/staticLigandFragment.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/COMMON/structurePreparer.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/GENETICDOCK/dockProblem.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/GENETICDOCK/evolutionaryDocking.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/GENETICDOCK/genes.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/GENETICDOCK/geneticAlgorithm.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/GENETICDOCK/geneticIndividual.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/GENETICDOCK/parameter.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/GENETICDOCK/rotateBond.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/GENETICDOCK/rotateBonds.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/IMGDOCK/IMGDock.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/DOCKING/geometricFit.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/atomicContactEnergy.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/composedEnergyProcessor.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/coulomb.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/distanceCoulomb.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/ENERGY/energyProcessor.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CCP4File.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/CIFFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/DCDFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/DSN6File.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/GAMESSDatFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/GAMESSLogFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/HINFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/HMOFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/INIFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/JCAMPFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/KCFFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOL2File.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOLFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOPACInputFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/MOPACOutputFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/NMRStarFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBInfo.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBRecords.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/PDBdefs.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/SCWRLRotamerFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/SDFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/TRRFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/XYZFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/amiraMeshFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/antechamberFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/bruker1DFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/bruker2DFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/commandlineParser.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/dockResultFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/genericMolFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/lineBasedFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/molFileFactory.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/paramFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameterSection.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/parameters.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/pubchemDownloader.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/resourceFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/trajectoryFile.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/FORMAT/trajectoryFileFactory.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/PDBAtom.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/PDBAtomIterator.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/PTE.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atom.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainer.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomContainerIterator.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/atomIterator.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bond.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/bondIterator.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/chain.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/chainIterator.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expression.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionParser.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionPredicate.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/expressionTree.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/extractors.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/forEach.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragment.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/fragmentIterator.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/global.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/iterator.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecularInteractions.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/molecule.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/moleculeIterator.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/nucleicAcid.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/nucleicAcidIterator.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/nucleotide.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/nucleotideIterator.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/predicate.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/protein.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/proteinIterator.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residue.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/residueIterator.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructure.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/secondaryStructureIterator.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/selector.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/standardPredicates.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/KERNEL/system.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/FFT1D.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/FFT2D.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/FFT3D.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/analyticalGeometry.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/angle.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/box3.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/circle3.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/common.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/complex.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/cubicSpline1D.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/cubicSpline2D.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/fftwCommon.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/function.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/line3.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/matrix44.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/numericalIntegrator.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/parsedFunction.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/piecewiseFunction.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/piecewisePolynomial.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/plane3.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/quaternion.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/rombergIntegrator.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/simpleBox3.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/sphere3.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/surface.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector2.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector3.h
Examining data/ball-1.5.0+git20180813.37fc53c/include/BALL/MATHS/vector4.h
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