Flawfinder version 2.0.10, (C) 2001-2019 David A. Wheeler. Number of rules (primarily dangerous function names) in C/C++ ruleset: 223 Examining data/cmtk-3.3.1p1+dfsg/testing/libs/GPU/libGPUTests.cxx Examining data/cmtk-3.3.1p1+dfsg/testing/libs/Registration/libRegistrationTestsSQLite.cxx Examining data/cmtk-3.3.1p1+dfsg/testing/libs/Registration/libRegistrationTests.cxx Examining data/cmtk-3.3.1p1+dfsg/testing/libs/Base/libBaseTests.cxx Examining data/cmtk-3.3.1p1+dfsg/testing/libs/IO/libIOTestsSQLite.cxx Examining data/cmtk-3.3.1p1+dfsg/testing/libs/System/libSystemTests.cxx Examining data/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml-get.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml-entity.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml-string.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/mxml/testmxml.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxmldoc.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml-node.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/mxml/test/functype.cxx Examining data/cmtk-3.3.1p1+dfsg/Utilities/mxml/test/function.cxx Examining data/cmtk-3.3.1p1+dfsg/Utilities/mxml/test/class.cxx Examining data/cmtk-3.3.1p1+dfsg/Utilities/mxml/test/struct.cxx Examining data/cmtk-3.3.1p1+dfsg/Utilities/mxml/test/enum.cxx Examining data/cmtk-3.3.1p1+dfsg/Utilities/mxml/test/type.cxx Examining data/cmtk-3.3.1p1+dfsg/Utilities/mxml/vcnet/config.h Examining data/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml-private.h Examining data/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml-file.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml-attr.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml-private.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/mxml/cmtk_mxml_mangle.h Examining data/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml-index.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml.h Examining data/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml-search.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/mxml/mxml-set.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/mxml/CMake/CheckCInline.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/biffbiff.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/encodingBzip2.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/formatPNG.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/teemDio.h Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/mop.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/encodingHex.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/write.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/methodsNrrd.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/format.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/miscAir.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/arraysNrrd.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/keyvalue.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/accessors.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/encodingGzip.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/teemEndian.h Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/formatNRRD.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/biffmsg.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/enumsNrrd.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/privateAir.h Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/dio.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/subset.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/privateNrrd.h Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/teemPng.h Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/cmtk_NrrdIO_mangle.h Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/NrrdIO.h Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/encodingAscii.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/defaultsNrrd.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/formatText.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/teemQnanhibit.h Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/endianAir.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/simple.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/preamble.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/encoding.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/sane.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/endianNrrd.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/754.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/array.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/qnanhibit.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/formatVTK.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/read.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/gzio.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/string.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/privateBiff.h Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/parseAir.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/axis.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/enum.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/teem32bit.h Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/formatPNM.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/reorder.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/comment.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/parseNrrd.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/encodingRaw.c Examining data/cmtk-3.3.1p1+dfsg/Utilities/NrrdIO/formatEPS.c Examining data/cmtk-3.3.1p1+dfsg/apps/pxsearch.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/regress.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/registration.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/volume_reconstruction.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/convertx.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/streamxform.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/fit_spline_xform.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/groupwise_init.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/unwarp_image_phantom.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/xform2scalar.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/asegment.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/fit_affine_xform_landmarks.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/gregxform.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/lmsba.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/make_initial_affine.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/mk_nifti_hdr.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/symplx.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/average_labels.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/detect_spheres_matched_filter.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/detect_adni_phantom.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/symplx_cuda.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/xform2itk.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/filter.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/mk_phantom_3d.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/vtkxform.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/concat_affine.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/sbai.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/cudatest.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/fibxform.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/interleaved_bad_slices.cxx Examining 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data/cmtk-3.3.1p1+dfsg/apps/convert_warp.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/volume_injection.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/mcaffine.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/reformatx.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/sba.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/fit_affine_dfield.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/unsplit.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/avg_adm.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/warp2ps.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/histogram.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/mcmrbias.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/dof2mat.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/mat2dof.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/lvote.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/mk_adni_phantom.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/reorient.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/film.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/mk_analyze_hdr.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/asegment_sri24.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/xform2dfield.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/dbtool.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/hausdorff.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/lsba.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/gmm.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/describe.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/levelset_cuda.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/groupwise_warp.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/jidb.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/sequence.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/dwi_mask_bad_slices.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/fit_spline_dfield.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/warpx.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/vol2csv.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/groupwise_affine.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/dcm2image.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/fib2image.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/destripe.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/glm.cxx Examining data/cmtk-3.3.1p1+dfsg/apps/stream_pixels.cxx Examining data/cmtk-3.3.1p1+dfsg/libs/Unstable/cmtkFilterVolumeCoupe.h Examining data/cmtk-3.3.1p1+dfsg/libs/Unstable/dummy.cxx Examining data/cmtk-3.3.1p1+dfsg/libs/Unstable/cmtkTypedArrayNoiseEstimatorMaximumLikelihood.cxx Examining data/cmtk-3.3.1p1+dfsg/libs/Unstable/cmtkTypedArrayNoiseEstimatorBrummer.h Examining data/cmtk-3.3.1p1+dfsg/libs/Unstable/cmtkFilterVolumeCoupe.cxx Examining data/cmtk-3.3.1p1+dfsg/libs/Unstable/cmtkTypedArrayNoiseEstimatorBrummer.cxx Examining data/cmtk-3.3.1p1+dfsg/libs/Unstable/doxygen.h Examining data/cmtk-3.3.1p1+dfsg/libs/Unstable/cmtkTypedArrayNoiseEstimatorMaximumLikelihood.h Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkEntropyMinimizationIntensityCorrectionFunctionalBase.h Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLeastSquaresPolynomialIntensityBiasField.cxx Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkSimpleLevelsetCommandLineBase.h Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/doxygen.h Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkSimpleLevelset.h Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkAtlasSegmentation.cxx Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkSphereDetectionNormalizedBipolarMatchedFilterFFT.cxx Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkSphereDetectionBipolarMatchedFilterFFT.h Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationShapeBasedAveragingInterpolation.cxx Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationVoting.h Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkOverlapMeasures.cxx Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationSTAPLE.cxx Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationLocalBinaryShapeBasedAveraging.h Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkDetectPhantomMagphanEMR051.h Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationLocalWeighting.h Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationLocalShapeBasedAveraging.h Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkEntropyMinimizationIntensityCorrectionFunctionalBase.cxx Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationMultiClassSTAPLE.h Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkEntropyMinimizationIntensityCorrectionFunctional.h Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkSimpleLevelsetCommandLineBase.cxx Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkSimpleLevelset.cxx Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationShapeBasedAveraging.h Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkSphereDetectionBipolarMatchedFilterFFT.cxx Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationVoting.cxx Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationLocalVoting.h Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkSimpleLevelsetCommandLine.h Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationLocalBinaryShapeBasedAveraging.cxx Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkDetectPhantomMagphanEMR051.cxx Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationLocalWeighting.cxx Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationLocalShapeBasedAveraging.cxx Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLeastSquaresPolynomialIntensityBiasField.h Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationMultiClassSTAPLE.cxx Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkEntropyMinimizationIntensityCorrectionFunctional.cxx Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkAtlasSegmentation.h Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationShapeBasedAveraging.cxx Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkSphereDetectionNormalizedBipolarMatchedFilterFFT.h Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationLocalVoting.cxx Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationShapeBasedAveragingInterpolation.h Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkMultiChannelEntropyMinimizationIntensityCorrectionFunctional.h Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkOverlapMeasures.h Examining data/cmtk-3.3.1p1+dfsg/libs/Segmentation/cmtkLabelCombinationSTAPLE.h Examining data/cmtk-3.3.1p1+dfsg/libs/GPU/cmtkDeviceArrayCUDA.cxx Examining data/cmtk-3.3.1p1+dfsg/libs/GPU/cmtkEntropyMinimizationIntensityCorrectionFunctionalDevice.cxx Examining data/cmtk-3.3.1p1+dfsg/libs/GPU/cmtkSimpleLevelsetDevice_kernels.h Examining data/cmtk-3.3.1p1+dfsg/libs/GPU/cmtkDeviceMemoryCUDA.cxx Examining 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