Flawfinder version 2.0.10, (C) 2001-2019 David A. Wheeler.
Number of rules (primarily dangerous function names) in C/C++ ruleset: 223
Examining data/codonw-1.4.4/codon_us.c
Examining data/codonw-1.4.4/codonW.h
Examining data/codonw-1.4.4/open_fil.c
Examining data/codonw-1.4.4/tester.c
Examining data/codonw-1.4.4/coresp.c
Examining data/codonw-1.4.4/codons.c
Examining data/codonw-1.4.4/commline.c
Examining data/codonw-1.4.4/menu.c
FINAL RESULTS:
data/codonw-1.4.4/codonW.h:38:74: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
#define pause {fprintf(stderr,"\nPress return or enter to continue -> ");gets(pm->junk);}
data/codonw-1.4.4/codon_us.c:652:7: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets(pm->junk);
data/codonw-1.4.4/codon_us.c:759:7: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets(pm->junk);
data/codonw-1.4.4/codon_us.c:899:10: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets(pm->junk);
data/codonw-1.4.4/codon_us.c:957:7: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets(pm->junk);
data/codonw-1.4.4/menu.c:106:9: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets(pm->junk);
data/codonw-1.4.4/menu.c:233:9: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets(pm->junk);
data/codonw-1.4.4/menu.c:305:9: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets(pm->junk);
data/codonw-1.4.4/menu.c:345:13: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets(pm->junk);
data/codonw-1.4.4/menu.c:382:13: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets(pm->junk);
data/codonw-1.4.4/menu.c:401:13: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets(pm->junk);
data/codonw-1.4.4/menu.c:425:13: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets(pm->junk);
data/codonw-1.4.4/menu.c:450:13: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets(pm->junk);
data/codonw-1.4.4/menu.c:580:9: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets(pm->junk);
data/codonw-1.4.4/menu.c:764:9: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets(pm->junk);
data/codonw-1.4.4/menu.c:814:10: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets( pm->junk );
data/codonw-1.4.4/menu.c:844:9: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets(pm->junk);
data/codonw-1.4.4/menu.c:893:9: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets(pm->junk);
data/codonw-1.4.4/menu.c:975:5: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets(pm->junk);
data/codonw-1.4.4/menu.c:1007:5: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets(pm->junk);
data/codonw-1.4.4/menu.c:1067:5: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets(pm->junk);
data/codonw-1.4.4/menu.c:1097:5: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets(pm->junk);
data/codonw-1.4.4/menu.c:1117:5: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets(pm->junk);
data/codonw-1.4.4/menu.c:1130:5: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets ( pm->junk);
data/codonw-1.4.4/menu.c:1224:4: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets(pm->junk);
data/codonw-1.4.4/open_fil.c:88:13: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets(infile_name); /* get filename */
data/codonw-1.4.4/open_fil.c:133:13: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets(answer);
data/codonw-1.4.4/open_fil.c:186:21: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets(answer);
data/codonw-1.4.4/tester.c:88:17: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets( pm->junk ) ;
data/codonw-1.4.4/tester.c:125:17: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets( pm->junk ) ;
data/codonw-1.4.4/tester.c:170:17: [5] (buffer) gets:
Does not check for buffer overflows (CWE-120, CWE-20). Use fgets() instead.
gets( pm->junk );
data/codonw-1.4.4/codonW.h:36:24: [4] (format) printf:
If format strings can be influenced by an attacker, they can be exploited
(CWE-134). Use a constant for the format specification.
#define debug(x) printf( #x " = %d", x);
data/codonw-1.4.4/codonW.h:162:22: [4] (shell) system:
This causes a new program to execute and is difficult to use safely
(CWE-78). try using a library call that implements the same functionality
if available.
# define clearscr(x) system("cls");
data/codonw-1.4.4/codonW.h:168:22: [4] (shell) system:
This causes a new program to execute and is difficult to use safely
(CWE-78). try using a library call that implements the same functionality
if available.
# define clearscr(x) system("clear");
data/codonw-1.4.4/codon_us.c:1214:6: [4] (format) fprintf:
If format strings can be influenced by an attacker, they can be exploited
(CWE-134). Use a constant for the format specification.
fprintf(fblkout, /* tabulated output */
data/codonw-1.4.4/codon_us.c:1499:6: [4] (format) fprintf:
If format strings can be influenced by an attacker, they can be exploited
(CWE-134). Use a constant for the format specification.
fprintf(fblkout, (pm->seq_format=='H') ?
data/codonw-1.4.4/codon_us.c:1700:7: [4] (buffer) fscanf:
The scanf() family's %s operation, without a limit specification, permits
buffer overflows (CWE-120, CWE-20). Specify a limit to %s, or use a
different input function.
fscanf(fnam, "%s", pm->junk); /* now we know the name of seq i */
data/codonw-1.4.4/codons.c:640:5: [4] (format) fprintf:
If format strings can be influenced by an attacker, they can be exploited
(CWE-134). Use a constant for the format specification.
fprintf(pm->my_err, "%3li>\t%6li %-40.40s\tDNA\tGC%"
data/codonw-1.4.4/codons.c:818:7: [4] (format) fprintf:
If format strings can be influenced by an attacker, they can be exploited
(CWE-134). Use a constant for the format specification.
fprintf(foutput, (pm->seq_format == 'H')?
data/codonw-1.4.4/codons.c:850:5: [4] (format) fprintf:
If format strings can be influenced by an attacker, they can be exploited
(CWE-134). Use a constant for the format specification.
fprintf(foutput, (pm->seq_format == 'H')?
data/codonw-1.4.4/codons.c:1061:6: [4] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused).
strcpy ( helplib , p );
data/codonw-1.4.4/codons.c:1084:1: [4] (buffer) strcat:
Does not check for buffer overflows when concatenating to destination
[MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
snprintf (warning: strncat is easily misused).
strcat (QueryString , help_keyword );
data/codonw-1.4.4/commline.c:167:9: [4] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused).
strcpy(pm->junk, p);
data/codonw-1.4.4/commline.c:188:9: [4] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused).
strcpy(pm->junk, p);
data/codonw-1.4.4/commline.c:207:9: [4] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused).
strcpy(pm->junk,p);
data/codonw-1.4.4/commline.c:333:9: [4] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused).
strcpy (pm->junk,p) ;
data/codonw-1.4.4/commline.c:379:9: [4] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused).
strcpy(pm->junk, p);
data/codonw-1.4.4/commline.c:574:11: [4] (buffer) sprintf:
Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
vsnprintf.
sprintf ( pm->junk,"Unrecognised argument %s", p);
data/codonw-1.4.4/commline.c:633:9: [4] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused).
strcpy(pm->curr_outfilename, prog_name);
data/codonw-1.4.4/commline.c:642:2: [4] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused).
strcpy(pm->curr_outfilename, root);
data/codonw-1.4.4/commline.c:673:2: [4] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused).
strcpy(pm->curr_tidyoutname, root);
data/codonw-1.4.4/coresp.c:98:5: [4] (buffer) fscanf:
The scanf() family's %s operation, without a limit specification, permits
buffer overflows (CWE-120, CWE-20). Specify a limit to %s, or use a
different input function.
fscanf(pm->fcoa_in,"%s",pm->junk);
data/codonw-1.4.4/open_fil.c:37:25: [4] (shell) system:
This causes a new program to execute and is difficult to use safely
(CWE-78). try using a library call that implements the same functionality
if available.
#define no_file_found() system("dir/w");
data/codonw-1.4.4/open_fil.c:39:25: [4] (shell) system:
This causes a new program to execute and is difficult to use safely
(CWE-78). try using a library call that implements the same functionality
if available.
#define no_file_found() system("ls -F");
data/codonw-1.4.4/open_fil.c:41:25: [4] (shell) system:
This causes a new program to execute and is difficult to use safely
(CWE-78). try using a library call that implements the same functionality
if available.
#define no_file_found() system("dir/w");
data/codonw-1.4.4/open_fil.c:97:17: [4] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused).
strcpy(infile_name, default_filename);
data/codonw-1.4.4/open_fil.c:100:9: [4] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused).
strcpy(infile_name, default_filename);
data/codonw-1.4.4/open_fil.c:142:17: [4] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused).
strcpy (infile_name, answer);
data/codonw-1.4.4/open_fil.c:144:9: [4] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused).
strcpy ( answer,infile_name); /* allow transfer */
data/codonw-1.4.4/open_fil.c:152:9: [4] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused).
strcpy ( answer,infile_name);
data/codonw-1.4.4/open_fil.c:215:9: [4] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused).
strcpy ( answer,infile_name);
data/codonw-1.4.4/tester.c:89:17: [4] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused).
strcpy ( tmp_AA, paa->aa3[i] );
data/codonw-1.4.4/tester.c:193:17: [4] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused).
strcpy ( tmp_AA, paa->aa1[pcu->ca[i]] );
data/codonw-1.4.4/tester.c:194:17: [4] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused).
strcpy ( tmp_AA2, paa->aa3[pcu->ca[i]] );
data/codonw-1.4.4/codons.c:1059:4: [3] (buffer) getenv:
Environment variables are untrustable input if they can be set by an
attacker. They can have any content and length, and the same variable can
be set more than once (CWE-807, CWE-20). Check environment variables
carefully before using them.
p=getenv( "CODONW_H" );
data/codonw-1.4.4/tester.c:62:5: [3] (random) srand:
This function is not sufficiently random for security-related functions
such as key and nonce creation (CWE-327). Use a more secure technique for
acquiring random values.
srand( (unsigned)time( NULL ) ); /* initialise random num gen */
data/codonw-1.4.4/codonW.h:49:3: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char *aa1[22]; /* 1 letter AA code */
data/codonw-1.4.4/codonW.h:50:3: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char *aa3[22]; /* 3 letter AA code */
data/codonw-1.4.4/codonW.h:51:3: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char *cod[65]; /* 3 letter name of codons */
data/codonw-1.4.4/codonW.h:62:3: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char fop_cod[65]; /* the optimal codons */
data/codonw-1.4.4/codonW.h:77:1: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char add_row[MAX_FILENAME_LEN]; /* file with supp sequences */
data/codonw-1.4.4/codonW.h:79:1: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char codons[65]; /* codon to be analysed */
data/codonw-1.4.4/codonW.h:80:1: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char amino [22]; /* amino acids to be COA'ed */
data/codonw-1.4.4/codonW.h:114:3: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char curr_infilename [MAX_FILENAME_LEN]; /* input filename */
data/codonw-1.4.4/codonW.h:115:3: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char curr_outfilename[MAX_FILENAME_LEN]; /* .out filename */
data/codonw-1.4.4/codonW.h:116:3: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char curr_tidyoutname[MAX_FILENAME_LEN]; /* .blk filename */
data/codonw-1.4.4/codonW.h:117:3: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char fop_filen[MAX_FILENAME_LEN]; /* user fop filename */
data/codonw-1.4.4/codonW.h:118:3: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char cai_filen[MAX_FILENAME_LEN]; /* user CAI filename */
data/codonw-1.4.4/codonW.h:119:3: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char cbi_filen[MAX_FILENAME_LEN]; /* user CBI filename */
data/codonw-1.4.4/codonW.h:120:3: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char curr_logfilename[MAX_FILENAME_LEN]; /* used for logging errors */
data/codonw-1.4.4/codonW.h:122:3: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char junk [BUFSIZ+1]; /* used to store char info */
data/codonw-1.4.4/codonW.h:123:3: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char messages [300]; /* used to constuct messgs */
data/codonw-1.4.4/codonW.h:176:1: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char title[100]; /* sequence description */
data/codonw-1.4.4/codonW.h:509:9: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
extern char title[100];
data/codonw-1.4.4/codon_us.c:187:4: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char codon[4];
data/codonw-1.4.4/codon_us.c:632:11: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
static char description[61];
data/codonw-1.4.4/codon_us.c:633:11: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
static char reference[61];
data/codonw-1.4.4/codon_us.c:669:8: [2] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused). Risk is low because the source is a constant string.
strcpy(user_cai.des,"User supplied CAI adaptation values ");
data/codonw-1.4.4/codon_us.c:670:8: [2] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused). Risk is low because the source is a constant string.
strcpy(user_cai.ref,"No reference");
data/codonw-1.4.4/codon_us.c:732:4: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char str[2];
data/codonw-1.4.4/codon_us.c:738:11: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
static char description[61];
data/codonw-1.4.4/codon_us.c:739:11: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
static char reference[61];
data/codonw-1.4.4/codon_us.c:741:11: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
static char has_opt_info[22];
data/codonw-1.4.4/codon_us.c:775:8: [2] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused). Risk is low because the source is a constant string.
strcpy(user_cbi.des,"User supplied choice");
data/codonw-1.4.4/codon_us.c:776:8: [2] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused). Risk is low because the source is a constant string.
strcpy(user_cbi.ref,"No reference");
data/codonw-1.4.4/codon_us.c:781:8: [2] (buffer) sprintf:
Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
vsnprintf. Risk is low because the source has a constant maximum length.
sprintf (str,"%c",c);
data/codonw-1.4.4/codon_us.c:782:21: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
if (isdigit(c) && atoi(str) >= 0
data/codonw-1.4.4/codon_us.c:783:10: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
&& atoi(str) <= 3) {
data/codonw-1.4.4/codon_us.c:784:43: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
user_cbi.fop_cod[x++] = (char) atoi(str);
data/codonw-1.4.4/codon_us.c:790:9: [2] (buffer) sprintf:
Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
vsnprintf. Risk is low because the source has a constant maximum length.
sprintf(pm->messages, "\nError in CBI file %i digits found, "
data/codonw-1.4.4/codon_us.c:831:10: [2] (buffer) sprintf:
Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
vsnprintf. Risk is low because the source has a constant maximum length.
sprintf(pm->messages, " Serious error in CBI information found"
data/codonw-1.4.4/codon_us.c:874:4: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char str[2];
data/codonw-1.4.4/codon_us.c:880:11: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
static char description[61];
data/codonw-1.4.4/codon_us.c:881:11: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
static char reference[61];
data/codonw-1.4.4/codon_us.c:884:11: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
static char has_opt_info[22];
data/codonw-1.4.4/codon_us.c:913:7: [2] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused). Risk is low because the source is a constant string.
strcpy(user_fop.des,"User supplied choice");
data/codonw-1.4.4/codon_us.c:914:7: [2] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused). Risk is low because the source is a constant string.
strcpy(user_fop.ref,"No reference");
data/codonw-1.4.4/codon_us.c:919:9: [2] (buffer) sprintf:
Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
vsnprintf. Risk is low because the source has a constant maximum length.
sprintf (str,"%c",c);
data/codonw-1.4.4/codon_us.c:921:27: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
if (isdigit(c) && atoi(str) >= 0
data/codonw-1.4.4/codon_us.c:922:16: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
&& atoi(str) <= 3) {
data/codonw-1.4.4/codon_us.c:923:41: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
user_fop.fop_cod[x++] = (char) atoi(str);
data/codonw-1.4.4/codon_us.c:928:9: [2] (buffer) sprintf:
Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
vsnprintf. Risk is low because the source has a constant maximum length.
sprintf(pm->messages, "\nError in Fop file %i values found, "
data/codonw-1.4.4/codon_us.c:988:6: [2] (buffer) sprintf:
Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
vsnprintf. Risk is low because the source has a constant maximum length.
sprintf(pm->messages, " Serious error in fop information found"
data/codonw-1.4.4/codon_us.c:1452:4: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char bases[5] = {'T', 'C', 'A', 'G'};
data/codonw-1.4.4/codons.c:290:26: [2] (tmpfile) tmpfile:
Function tmpfile() has a security flaw on some systems (e.g., older System
V systems) (CWE-377).
if ((foutput = tmpfile()) == NULL)
data/codonw-1.4.4/codons.c:292:26: [2] (tmpfile) tmpfile:
Function tmpfile() has a security flaw on some systems (e.g., older System
V systems) (CWE-377).
if ((fblkout = tmpfile()) == NULL)
data/codonw-1.4.4/codons.c:350:3: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char seq[MAX_GENE + LINE_LENGTH + 1];
data/codonw-1.4.4/codons.c:351:3: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char in[LINE_LENGTH + 1];
data/codonw-1.4.4/codons.c:544:3: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char codon[4];
data/codonw-1.4.4/codons.c:678:3: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char codon[4];
data/codonw-1.4.4/codons.c:760:7: [2] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused). Risk is low because the source is a constant string.
strcpy(title, "Average_of_genes"):
data/codonw-1.4.4/codons.c:761:7: [2] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused). Risk is low because the source is a constant string.
strcpy(title, "Average of genes");
data/codonw-1.4.4/codons.c:916:23: [2] (misc) fopen:
Check when opening files - can an attacker redirect it (via symlinks),
force the opening of special file type (e.g., device files), move things
around to create a race condition, control its ancestors, or change its
contents? (CWE-362).
if (pm->inputfile = fopen("cbrawin", "r")) {
data/codonw-1.4.4/codons.c:920:23: [2] (misc) fopen:
Check when opening files - can an attacker redirect it (via symlinks),
force the opening of special file type (e.g., device files), move things
around to create a race condition, control its ancestors, or change its
contents? (CWE-362).
if (pm->inputfile = fopen("cbfcco", "r")) {
data/codonw-1.4.4/codons.c:924:23: [2] (misc) fopen:
Check when opening files - can an attacker redirect it (via symlinks),
force the opening of special file type (e.g., device files), move things
around to create a race condition, control its ancestors, or change its
contents? (CWE-362).
if (pm->inputfile = fopen("cbfcli", "r")) {
data/codonw-1.4.4/codons.c:928:23: [2] (misc) fopen:
Check when opening files - can an attacker redirect it (via symlinks),
force the opening of special file type (e.g., device files), move things
around to create a race condition, control its ancestors, or change its
contents? (CWE-362).
if (pm->inputfile = fopen("cbfcpc", "r")) {
data/codonw-1.4.4/codons.c:932:23: [2] (misc) fopen:
Check when opening files - can an attacker redirect it (via symlinks),
force the opening of special file type (e.g., device files), move things
around to create a race condition, control its ancestors, or change its
contents? (CWE-362).
if (pm->inputfile = fopen("cbfcpl", "r")) {
data/codonw-1.4.4/codons.c:936:23: [2] (misc) fopen:
Check when opening files - can an attacker redirect it (via symlinks),
force the opening of special file type (e.g., device files), move things
around to create a race condition, control its ancestors, or change its
contents? (CWE-362).
if (pm->inputfile = fopen("cbfcta", "r")) {
data/codonw-1.4.4/codons.c:940:23: [2] (misc) fopen:
Check when opening files - can an attacker redirect it (via symlinks),
force the opening of special file type (e.g., device files), move things
around to create a race condition, control its ancestors, or change its
contents? (CWE-362).
if (pm->inputfile = fopen("cbfcvp", "r")) {
data/codonw-1.4.4/codons.c:944:23: [2] (misc) fopen:
Check when opening files - can an attacker redirect it (via symlinks),
force the opening of special file type (e.g., device files), move things
around to create a race condition, control its ancestors, or change its
contents? (CWE-362).
if (pm->inputfile = fopen("cb1rawin", "r")) {
data/codonw-1.4.4/codons.c:1049:2: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char helplib [MAX_FILENAME_LEN]="";
data/codonw-1.4.4/codons.c:1051:2: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char QueryString[120]; /* limit for help phrase is 120 chars */
data/codonw-1.4.4/codons.c:1052:2: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char HelpMessage[121];
data/codonw-1.4.4/codons.c:1063:6: [2] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused). Risk is low because the source is a constant string.
strcpy ( helplib , "/usr/share/codonw/codonW.hlp");
data/codonw-1.4.4/commline.c:43:5: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char prog_name[64];
data/codonw-1.4.4/commline.c:44:5: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char root[MAX_FILENAME_LEN];
data/codonw-1.4.4/commline.c:64:5: [2] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused). Risk is low because the source is a constant string.
strcpy(prog_name, "codon"); /* OK I give up */
data/codonw-1.4.4/commline.c:172:17: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
|| atoi(pm->junk) < 0 || atoi(pm->junk) > NumGeneticCodes ) {
data/codonw-1.4.4/commline.c:172:39: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
|| atoi(pm->junk) < 0 || atoi(pm->junk) > NumGeneticCodes ) {
data/codonw-1.4.4/commline.c:177:31: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
pm->code = (char) atoi(p); /* define genetic code */
data/codonw-1.4.4/commline.c:192:44: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
if ( n != (int)strlen(pm->junk) || atoi(pm->junk) < 0 ||
data/codonw-1.4.4/commline.c:193:3: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
atoi(pm->junk) >= NumFopSpecies ) {
data/codonw-1.4.4/commline.c:198:33: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
pm->f_type = (char) atoi(p); /* define organism type for Fop */
data/codonw-1.4.4/commline.c:211:44: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
if ( n != (int)strlen(pm->junk) || atoi(pm->junk) < 0 ||
data/codonw-1.4.4/commline.c:212:3: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
atoi(pm->junk) >= NumCaiSpecies) {
data/codonw-1.4.4/commline.c:218:33: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
pm->c_type = (char) atoi(p); /* define organism type for CAI */
data/codonw-1.4.4/commline.c:319:17: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
n = (char)atoi(p);
data/codonw-1.4.4/commline.c:336:30: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
pcoa->fop_gene=atoi(pm->junk)*-1;
data/codonw-1.4.4/commline.c:338:31: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
pcoa->fop_gene=atoi(pm->junk);
data/codonw-1.4.4/commline.c:634:9: [2] (buffer) strcat:
Does not check for buffer overflows when concatenating to destination
[MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
snprintf (warning: strncat is easily misused). Risk is low because the
source is a constant string.
strcat(pm->curr_outfilename, ".def");
data/codonw-1.4.4/commline.c:643:9: [2] (buffer) strcat:
Does not check for buffer overflows when concatenating to destination
[MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
snprintf (warning: strncat is easily misused). Risk is low because the
source is a constant string.
strcat(pm->curr_outfilename, ".out");
data/codonw-1.4.4/commline.c:674:9: [2] (buffer) strcat:
Does not check for buffer overflows when concatenating to destination
[MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
snprintf (warning: strncat is easily misused). Risk is low because the
source is a constant string.
strcat(pm->curr_tidyoutname, ".blk");
data/codonw-1.4.4/commline.c:711:10: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
static char *argw[MAX_ARGS];
data/codonw-1.4.4/coresp.c:349:5: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char bid[17];
data/codonw-1.4.4/coresp.c:379:5: [2] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused). Risk is low because the source is a constant string.
strcpy(bid,"cbfcpl");
data/codonw-1.4.4/coresp.c:381:5: [2] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused). Risk is low because the source is a constant string.
strcpy(bid,"cbfcpc");
data/codonw-1.4.4/coresp.c:395:5: [2] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused). Risk is low because the source is a constant string.
strcpy(bid,"cbfcta");
data/codonw-1.4.4/menu.c:136:20: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
c = atoi( pm->junk);
data/codonw-1.4.4/menu.c:156:5: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char root[MAX_FILENAME_LEN];
data/codonw-1.4.4/menu.c:192:13: [2] (buffer) strcat:
Does not check for buffer overflows when concatenating to destination
[MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
snprintf (warning: strncat is easily misused). Risk is low because the
source is a constant string.
strcat(root, ".out"), "w", (int)pm->verbose)))
data/codonw-1.4.4/menu.c:209:13: [2] (buffer) strcat:
Does not check for buffer overflows when concatenating to destination
[MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
snprintf (warning: strncat is easily misused). Risk is low because the
source is a constant string.
strcat(root, ".blk"), "w", (int) pm->verbose)))
data/codonw-1.4.4/menu.c:330:17: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
c = atoi(pm->junk);
data/codonw-1.4.4/menu.c:384:35: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
pm->term_length = atoi(pm->junk) ;
data/codonw-1.4.4/menu.c:403:27: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
c = (char)atoi(pm->junk);
data/codonw-1.4.4/menu.c:427:27: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
c = (char)atoi(pm->junk);
data/codonw-1.4.4/menu.c:452:27: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
c = (char)atoi( pm->junk);
data/codonw-1.4.4/menu.c:602:18: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
c = atoi(pm->junk);
data/codonw-1.4.4/menu.c:786:18: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
c = atoi(pm->junk);
data/codonw-1.4.4/menu.c:865:18: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
c = atoi(pm->junk);
data/codonw-1.4.4/menu.c:916:17: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
c = atoi(pm->junk);
data/codonw-1.4.4/menu.c:1028:11: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
c = atoi(pm->junk);
data/codonw-1.4.4/menu.c:1089:17: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
c = atoi(pm->junk);
data/codonw-1.4.4/menu.c:1100:15: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
i = (char)atoi(pm->junk);
data/codonw-1.4.4/menu.c:1134:22: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
pcoa->fop_gene=atoi(pm->junk)*-1;
data/codonw-1.4.4/menu.c:1140:22: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
pcoa->fop_gene=atoi(pm->junk); /* set No. genes */
data/codonw-1.4.4/open_fil.c:71:5: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char infile_name[MAX_FILENAME_LEN]="";
data/codonw-1.4.4/open_fil.c:73:5: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char temp[4];
data/codonw-1.4.4/open_fil.c:127:27: [2] (misc) fopen:
Check when opening files - can an attacker redirect it (via symlinks),
force the opening of special file type (e.g., device files), move things
around to create a race condition, control its ancestors, or change its
contents? (CWE-362).
while ( !(input = fopen (infile_name , write_perm ))) {
data/codonw-1.4.4/open_fil.c:151:17: [2] (misc) fopen:
Check when opening files - can an attacker redirect it (via symlinks),
force the opening of special file type (e.g., device files), move things
around to create a race condition, control its ancestors, or change its
contents? (CWE-362).
input = fopen (infile_name, write_perm);
data/codonw-1.4.4/open_fil.c:160:27: [2] (misc) fopen:
Check when opening files - can an attacker redirect it (via symlinks),
force the opening of special file type (e.g., device files), move things
around to create a race condition, control its ancestors, or change its
contents? (CWE-362).
if ( (input = fopen (infile_name , "r")) ) {
data/codonw-1.4.4/open_fil.c:201:25: [2] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused). Risk is low because the source is a constant string.
strcpy(write_perm, "a+");
data/codonw-1.4.4/open_fil.c:214:17: [2] (misc) fopen:
Check when opening files - can an attacker redirect it (via symlinks),
force the opening of special file type (e.g., device files), move things
around to create a race condition, control its ancestors, or change its
contents? (CWE-362).
input = fopen (infile_name,write_perm); /* opens filehandle */
data/codonw-1.4.4/tester.c:59:5: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char tmp_AA [4];
data/codonw-1.4.4/tester.c:60:5: [2] (buffer) char:
Statically-sized arrays can be improperly restricted, leading to potential
overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
functions that limit length, or ensure that the size is larger than the
maximum possible length.
char tmp_AA2[4];
data/codonw-1.4.4/tester.c:150:22: [2] (integer) atoi:
Unless checked, the resulting number can exceed the expected range
(CWE-190). If source untrusted, check both minimum and maximum, even if the
input had no minus sign (large numbers can roll over into negative number;
consider saving to an unsigned value if that is intended).
if ( atoi(pm->junk) == *(da + i) )
data/codonw-1.4.4/codon_us.c:192:7: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(codon, (seq + i), 3);
data/codonw-1.4.4/codon_us.c:780:20: [1] (buffer) fgetc:
Check buffer boundaries if used in a loop including recursive loops
(CWE-120, CWE-20).
while ((c = fgetc(pm->cbifile)) != EOF && x <=66) {
data/codonw-1.4.4/codon_us.c:918:19: [1] (buffer) fgetc:
Check buffer boundaries if used in a loop including recursive loops
(CWE-120, CWE-20).
while ((c = fgetc(pm->fopfile)) != EOF && x <=66) {
data/codonw-1.4.4/codon_us.c:1325:8: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
if (strlen(codon) == 3) {
data/codonw-1.4.4/codon_us.c:1554:26: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
for (i = 0; i < (int) strlen(ttitle); i++) /* don't take any chances */
data/codonw-1.4.4/codon_us.c:1557:4: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(pm->junk, ttitle, 20); /* sequence name */
data/codonw-1.4.4/codons.c:146:21: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
(int) strlen(Revision) - 11, Revision +10 );
data/codonw-1.4.4/codons.c:287:11: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
if (strlen(pcoa->add_row)) {
data/codonw-1.4.4/codons.c:402:52: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
for (ii = 1; isspace( (int) in[ii]) && ii < (int) strlen(in); ii++)
data/codonw-1.4.4/codons.c:404:2: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(title, in + ii, 99);
data/codonw-1.4.4/codons.c:409:24: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
for (i = 0; i < (int) strlen(title); i++) {
data/codonw-1.4.4/codons.c:414:25: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
else if (i == (int) (strlen(title) - 1))
data/codonw-1.4.4/codons.c:951:11: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
if (strlen(pm->curr_infilename))
data/codonw-1.4.4/codons.c:955:11: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
if (strlen(pm->curr_outfilename)){
data/codonw-1.4.4/codons.c:961:11: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
if (strlen(pm->curr_tidyoutname)){
data/codonw-1.4.4/codons.c:1083:1: [1] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused). Risk is low because the source is a constant character.
strcpy (QueryString , "#");
data/codonw-1.4.4/codons.c:1085:1: [1] (buffer) strcat:
Does not check for buffer overflows when concatenating to destination
[MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
snprintf (warning: strncat is easily misused). Risk is low because the
source is a constant character.
strcat (QueryString , "#");
data/codonw-1.4.4/codons.c:1141:10: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
if ( strlen ( input) == 1 && (char)toupper((int)input[0]) == 'H')
data/codonw-1.4.4/commline.c:49:9: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(prog_name, p+1 , 63);
data/codonw-1.4.4/commline.c:51:9: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(prog_name, **pargv, 10);
data/codonw-1.4.4/commline.c:54:9: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(prog_name, p+1, 63);
data/codonw-1.4.4/commline.c:56:9: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(prog_name, **pargv, 10);
data/codonw-1.4.4/commline.c:59:9: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(prog_name, p+1, 63);
data/codonw-1.4.4/commline.c:61:9: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(prog_name, **pargv, 10);
data/codonw-1.4.4/commline.c:171:24: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
if ( n != (int)strlen(pm->junk)
data/codonw-1.4.4/commline.c:192:24: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
if ( n != (int)strlen(pm->junk) || atoi(pm->junk) < 0 ||
data/codonw-1.4.4/commline.c:211:24: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
if ( n != (int)strlen(pm->junk) || atoi(pm->junk) < 0 ||
data/codonw-1.4.4/commline.c:277:13: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(pm->fop_filen, pm->junk, MAX_FILENAME_LEN - 1);
data/codonw-1.4.4/commline.c:288:13: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(pm->cai_filen, pm->junk, MAX_FILENAME_LEN - 1);
data/codonw-1.4.4/commline.c:297:13: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(pm->cbi_filen, pm->junk, MAX_FILENAME_LEN - 1);
data/codonw-1.4.4/commline.c:586:13: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(pm->curr_infilename, pm->junk, MAX_FILENAME_LEN - 1);
data/codonw-1.4.4/commline.c:595:13: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(pm->curr_outfilename, pm->junk, MAX_FILENAME_LEN - 1);
data/codonw-1.4.4/commline.c:606:13: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(pm->curr_tidyoutname, pm->junk, MAX_FILENAME_LEN - 1);
data/codonw-1.4.4/commline.c:623:6: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(pm->curr_infilename, pm->junk, MAX_FILENAME_LEN - 1);
data/codonw-1.4.4/commline.c:632:27: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
if ( !pm->codonW && strlen (prog_name) ){
data/codonw-1.4.4/commline.c:638:2: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(root, pm->curr_infilename, MAX_FILENAME_LEN - 5);
data/codonw-1.4.4/commline.c:639:17: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
for (n = (int) strlen(root); n && root[n]!='.' ; --n);
data/codonw-1.4.4/commline.c:651:2: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(pm->curr_outfilename, pm->junk, MAX_FILENAME_LEN - 1);
data/codonw-1.4.4/commline.c:656:2: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(pm->curr_outfilename, pm->junk, MAX_FILENAME_LEN - 1);
data/codonw-1.4.4/commline.c:668:2: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(root, pm->curr_infilename , MAX_FILENAME_LEN - 5);
data/codonw-1.4.4/commline.c:670:17: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
for (n = (int) strlen(root); n && root[n]!='.' ; --n);
data/codonw-1.4.4/commline.c:681:2: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(pm->curr_tidyoutname, pm->junk, MAX_FILENAME_LEN - 1);
data/codonw-1.4.4/commline.c:686:2: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(pm->curr_tidyoutname, pm->junk, MAX_FILENAME_LEN - 1);
data/codonw-1.4.4/commline.c:725:37: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
nc = mode & GARG_EXACT ? BUFSIZ : strlen(targ);
data/codonw-1.4.4/menu.c:162:10: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
if ( strlen(pm->curr_infilename) ) {
data/codonw-1.4.4/menu.c:179:5: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(pm->curr_infilename, pm->junk, MAX_FILENAME_LEN - 1);
data/codonw-1.4.4/menu.c:180:5: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(root, pm->curr_infilename , MAX_FILENAME_LEN - 5);
data/codonw-1.4.4/menu.c:183:20: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
for (n = (int) strlen(root); n && root[n] != '.' ; --n);
data/codonw-1.4.4/menu.c:186:10: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
if ( strlen(pm->curr_outfilename)) {
data/codonw-1.4.4/menu.c:197:5: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(pm->curr_outfilename, pm->junk, MAX_FILENAME_LEN - 1);
data/codonw-1.4.4/menu.c:198:5: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(root, pm->curr_infilename , MAX_FILENAME_LEN - 5);
data/codonw-1.4.4/menu.c:200:20: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
for (n = (int) strlen(root); n && root[n]!='.' ; --n);
data/codonw-1.4.4/menu.c:203:10: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
if ( strlen(pm->curr_tidyoutname)) {
data/codonw-1.4.4/menu.c:212:5: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(pm->curr_tidyoutname, pm->junk, MAX_FILENAME_LEN - 1);
data/codonw-1.4.4/menu.c:283:28: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
printf ("{%s}\n", (strlen(pm->curr_logfilename) > 1) ? "TRUE" :
data/codonw-1.4.4/menu.c:364:18: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
if ( strlen(pm->curr_logfilename) > 1 ) {
data/codonw-1.4.4/menu.c:365:17: [1] (buffer) strcpy:
Does not check for buffer overflows when copying to destination [MS-banned]
(CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
easily misused). Risk is low because the source is a constant character.
strcpy(pm->curr_logfilename , "" ); /* blank logfilename */
data/codonw-1.4.4/menu.c:375:17: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(pm->curr_logfilename, pm->junk, MAX_FILENAME_LEN-1);
data/codonw-1.4.4/menu.c:983:7: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(pm->curr_tidyoutname, pm->junk, MAX_FILENAME_LEN - 1);
data/codonw-1.4.4/menu.c:1098:11: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
if ( !strlen(pm->junk) ) break;
data/codonw-1.4.4/menu.c:1118:11: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
if ( !strlen(pm->junk) ) break;
data/codonw-1.4.4/menu.c:1119:5: [1] (buffer) strncpy:
Easily used incorrectly; doesn't always \0-terminate or check for invalid
pointers [MS-banned] (CWE-120).
strncpy(pcoa->add_row,pm->junk,MAX_FILENAME_LEN-1);
data/codonw-1.4.4/menu.c:1131:10: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
if( !strlen(pm->junk) ) continue;
data/codonw-1.4.4/menu.c:1226:10: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
if ( !strlen(pm->junk) || toupper( (int) pm->junk[0]) == 'X' ) {
data/codonw-1.4.4/menu.c:1285:33: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
printf("\tVersion : %.*s\n", strlen(Revision) , Revision );
data/codonw-1.4.4/menu.c:1286:45: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
printf("\tRevised :%.*s %s %.*s\n",(int) strlen(Update) - 7, Update + 6,
data/codonw-1.4.4/menu.c:1288:9: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
(int) strlen(Author) - 10, Author + 9);
data/codonw-1.4.4/open_fil.c:84:10: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
if ( strlen(file_needed)) {
data/codonw-1.4.4/open_fil.c:85:17: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
while (!strlen(infile_name) ) {
data/codonw-1.4.4/open_fil.c:96:19: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
if ( !strlen(infile_name) && default_filename )
data/codonw-1.4.4/open_fil.c:99:17: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
} else if ( strlen(default_filename) ) /* use default filename */
data/codonw-1.4.4/open_fil.c:129:43: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
"I cannot find %.*s \n\n",strlen(infile_name),infile_name);
data/codonw-1.4.4/open_fil.c:135:17: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
if (strlen (answer)==1 &&
data/codonw-1.4.4/open_fil.c:141:22: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
else if (strlen (answer))
data/codonw-1.4.4/open_fil.c:165:21: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
strlen(infile_name), infile_name);
data/codonw-1.4.4/open_fil.c:193:22: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
if ( strlen(answer) <= 1 ) {
data/codonw-1.4.4/tester.c:90:40: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
for ( x = 0 ; x < (int)strlen(tmp_AA); x++)
data/codonw-1.4.4/tester.c:92:40: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
for ( x = 0 ; x < (int)strlen(pm->junk ); x++)
data/codonw-1.4.4/tester.c:126:40: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
for ( x = 0 ; x < (int)strlen(pm->junk); x++)
data/codonw-1.4.4/tester.c:171:40: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
for ( x = 0 ; x < (int)strlen(pm->junk ); x++)
data/codonw-1.4.4/tester.c:197:40: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
for ( x = 0 ; x < (int)strlen(tmp_AA); x++)
data/codonw-1.4.4/tester.c:199:40: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
for ( x = 0 ; x < (int)strlen(tmp_AA2); x++)
data/codonw-1.4.4/tester.c:201:40: [1] (buffer) strlen:
Does not handle strings that are not \0-terminated; if given one it may
perform an over-read (it could cause a crash if unprotected) (CWE-126).
for ( x = 0 ; x < (int)strlen(pm->junk ); x++)
ANALYSIS SUMMARY:
Hits = 268
Lines analyzed = 8196 in approximately 0.40 seconds (20429 lines/second)
Physical Source Lines of Code (SLOC) = 5908
Hits@level = [0] 684 [1] 83 [2] 119 [3] 2 [4] 33 [5] 31
Hits@level+ = [0+] 952 [1+] 268 [2+] 185 [3+] 66 [4+] 64 [5+] 31
Hits/KSLOC@level+ = [0+] 161.137 [1+] 45.3622 [2+] 31.3135 [3+] 11.1713 [4+] 10.8328 [5+] 5.24712
Dot directories skipped = 1 (--followdotdir overrides)
Minimum risk level = 1
Not every hit is necessarily a security vulnerability.
There may be other security vulnerabilities; review your code!
See 'Secure Programming HOWTO'
(https://dwheeler.com/secure-programs) for more information.