Flawfinder version 2.0.10, (C) 2001-2019 David A. Wheeler.
Number of rules (primarily dangerous function names) in C/C++ ruleset: 223
Examining data/diamond-aligner-2.0.5/src/align/align.cpp
Examining data/diamond-aligner-2.0.5/src/align/align.h
Examining data/diamond-aligner-2.0.5/src/align/culling.cpp
Examining data/diamond-aligner-2.0.5/src/align/culling.h
Examining data/diamond-aligner-2.0.5/src/align/extend.cpp
Examining data/diamond-aligner-2.0.5/src/align/extend.h
Examining data/diamond-aligner-2.0.5/src/align/gapped.cpp
Examining data/diamond-aligner-2.0.5/src/align/gapped_filter.cpp
Examining data/diamond-aligner-2.0.5/src/align/global_ranking/extend.cpp
Examining data/diamond-aligner-2.0.5/src/align/global_ranking/global_ranking.cpp
Examining data/diamond-aligner-2.0.5/src/align/global_ranking/global_ranking.h
Examining data/diamond-aligner-2.0.5/src/align/legacy/banded_swipe_pipeline.cpp
Examining data/diamond-aligner-2.0.5/src/align/legacy/query_mapper.cpp
Examining data/diamond-aligner-2.0.5/src/align/legacy/query_mapper.h
Examining data/diamond-aligner-2.0.5/src/align/load_hits.cpp
Examining data/diamond-aligner-2.0.5/src/align/memory.cpp
Examining data/diamond-aligner-2.0.5/src/align/output.cpp
Examining data/diamond-aligner-2.0.5/src/align/ranking.cpp
Examining data/diamond-aligner-2.0.5/src/align/target.h
Examining data/diamond-aligner-2.0.5/src/align/ungapped.cpp
Examining data/diamond-aligner-2.0.5/src/basic/basic.cpp
Examining data/diamond-aligner-2.0.5/src/basic/cbs.cpp
Examining data/diamond-aligner-2.0.5/src/basic/cbs.h
Examining data/diamond-aligner-2.0.5/src/basic/config.cpp
Examining data/diamond-aligner-2.0.5/src/basic/config.h
Examining data/diamond-aligner-2.0.5/src/basic/const.h
Examining data/diamond-aligner-2.0.5/src/basic/diagonal_segment.h
Examining data/diamond-aligner-2.0.5/src/basic/hssp.cpp
Examining data/diamond-aligner-2.0.5/src/basic/masking.cpp
Examining data/diamond-aligner-2.0.5/src/basic/masking.h
Examining data/diamond-aligner-2.0.5/src/basic/match.h
Examining data/diamond-aligner-2.0.5/src/basic/matrix_tables.cpp
Examining data/diamond-aligner-2.0.5/src/basic/packed_loc.h
Examining data/diamond-aligner-2.0.5/src/basic/packed_sequence.h
Examining data/diamond-aligner-2.0.5/src/basic/packed_transcript.h
Examining data/diamond-aligner-2.0.5/src/basic/parameters.h
Examining data/diamond-aligner-2.0.5/src/basic/reduction.h
Examining data/diamond-aligner-2.0.5/src/basic/score_matrix.cpp
Examining data/diamond-aligner-2.0.5/src/basic/score_matrix.h
Examining data/diamond-aligner-2.0.5/src/basic/seed.h
Examining data/diamond-aligner-2.0.5/src/basic/seed_iterator.h
Examining data/diamond-aligner-2.0.5/src/basic/sequence.h
Examining data/diamond-aligner-2.0.5/src/basic/shape.h
Examining data/diamond-aligner-2.0.5/src/basic/shape_config.h
Examining data/diamond-aligner-2.0.5/src/basic/statistics.h
Examining data/diamond-aligner-2.0.5/src/basic/translate.h
Examining data/diamond-aligner-2.0.5/src/basic/translated_position.h
Examining data/diamond-aligner-2.0.5/src/basic/value.cpp
Examining data/diamond-aligner-2.0.5/src/basic/value.h
Examining data/diamond-aligner-2.0.5/src/chaining/chaining.h
Examining data/diamond-aligner-2.0.5/src/chaining/greedy_align.cpp
Examining data/diamond-aligner-2.0.5/src/chaining/smith_waterman.cpp
Examining data/diamond-aligner-2.0.5/src/cluster/cluster.h
Examining data/diamond-aligner-2.0.5/src/cluster/cluster_registry.cpp
Examining data/diamond-aligner-2.0.5/src/cluster/cluster_registry.h
Examining data/diamond-aligner-2.0.5/src/cluster/disjoint_set.h
Examining data/diamond-aligner-2.0.5/src/cluster/mcl.cpp
Examining data/diamond-aligner-2.0.5/src/cluster/mcl.h
Examining data/diamond-aligner-2.0.5/src/cluster/medoid.cpp
Examining data/diamond-aligner-2.0.5/src/cluster/multi_step_cluster.cpp
Examining data/diamond-aligner-2.0.5/src/cluster/multi_step_cluster.h
Examining data/diamond-aligner-2.0.5/src/data/frequent_seeds.cpp
Examining data/diamond-aligner-2.0.5/src/data/frequent_seeds.h
Examining data/diamond-aligner-2.0.5/src/data/index.h
Examining data/diamond-aligner-2.0.5/src/data/load_seqs.h
Examining data/diamond-aligner-2.0.5/src/data/metadata.h
Examining data/diamond-aligner-2.0.5/src/data/queries.cpp
Examining data/diamond-aligner-2.0.5/src/data/queries.h
Examining data/diamond-aligner-2.0.5/src/data/ref_dictionary.cpp
Examining data/diamond-aligner-2.0.5/src/data/ref_dictionary.h
Examining data/diamond-aligner-2.0.5/src/data/reference.cpp
Examining data/diamond-aligner-2.0.5/src/data/reference.h
Examining data/diamond-aligner-2.0.5/src/data/seed_array.cpp
Examining data/diamond-aligner-2.0.5/src/data/seed_array.h
Examining data/diamond-aligner-2.0.5/src/data/seed_histogram.cpp
Examining data/diamond-aligner-2.0.5/src/data/seed_histogram.h
Examining data/diamond-aligner-2.0.5/src/data/seed_set.cpp
Examining data/diamond-aligner-2.0.5/src/data/seed_set.h
Examining data/diamond-aligner-2.0.5/src/data/sequence_set.h
Examining data/diamond-aligner-2.0.5/src/data/string_set.h
Examining data/diamond-aligner-2.0.5/src/data/taxon_list.cpp
Examining data/diamond-aligner-2.0.5/src/data/taxon_list.h
Examining data/diamond-aligner-2.0.5/src/data/taxonomy.cpp
Examining data/diamond-aligner-2.0.5/src/data/taxonomy.h
Examining data/diamond-aligner-2.0.5/src/data/taxonomy_filter.cpp
Examining data/diamond-aligner-2.0.5/src/data/taxonomy_nodes.cpp
Examining data/diamond-aligner-2.0.5/src/data/taxonomy_nodes.h
Examining data/diamond-aligner-2.0.5/src/dp/banded_sw.cpp
Examining data/diamond-aligner-2.0.5/src/dp/comp_based_stats.cpp
Examining data/diamond-aligner-2.0.5/src/dp/comp_based_stats.h
Examining data/diamond-aligner-2.0.5/src/dp/dp.h
Examining data/diamond-aligner-2.0.5/src/dp/hsp_traits.h
Examining data/diamond-aligner-2.0.5/src/dp/needleman_wunsch.cpp
Examining data/diamond-aligner-2.0.5/src/dp/scan_diags.cpp
Examining data/diamond-aligner-2.0.5/src/dp/scan_diags.h
Examining data/diamond-aligner-2.0.5/src/dp/score_profile.h
Examining data/diamond-aligner-2.0.5/src/dp/score_vector.h
Examining data/diamond-aligner-2.0.5/src/dp/score_vector_int16.h
Examining data/diamond-aligner-2.0.5/src/dp/score_vector_int8.h
Examining data/diamond-aligner-2.0.5/src/dp/sw_3frame.cpp
Examining data/diamond-aligner-2.0.5/src/dp/swipe/banded_3frame_swipe.cpp
Examining data/diamond-aligner-2.0.5/src/dp/swipe/banded_swipe.cpp
Examining data/diamond-aligner-2.0.5/src/dp/swipe/swipe.cpp
Examining data/diamond-aligner-2.0.5/src/dp/swipe/swipe.h
Examining data/diamond-aligner-2.0.5/src/dp/swipe/swipe_wrapper.cpp
Examining data/diamond-aligner-2.0.5/src/dp/swipe/target_iterator.h
Examining data/diamond-aligner-2.0.5/src/dp/traceback.h
Examining data/diamond-aligner-2.0.5/src/dp/ungapped.h
Examining data/diamond-aligner-2.0.5/src/dp/ungapped_align.cpp
Examining data/diamond-aligner-2.0.5/src/dp/ungapped_simd.cpp
Examining data/diamond-aligner-2.0.5/src/dp/ungapped_simd.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Cholesky/LDLT.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Cholesky/LLT.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Cholesky/LLT_LAPACKE.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/CholmodSupport/CholmodSupport.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/Array.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/ArrayBase.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/ArrayWrapper.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/Assign.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/AssignEvaluator.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/Assign_MKL.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/BandMatrix.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/Block.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/BooleanRedux.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/CommaInitializer.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/ConditionEstimator.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/CoreEvaluators.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/CoreIterators.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/CwiseBinaryOp.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/CwiseNullaryOp.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/CwiseTernaryOp.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/CwiseUnaryOp.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/CwiseUnaryView.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/DenseBase.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/DenseCoeffsBase.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/DenseStorage.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/Diagonal.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/DiagonalMatrix.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/DiagonalProduct.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/Dot.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/EigenBase.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/ForceAlignedAccess.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/Fuzzy.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/GeneralProduct.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/GenericPacketMath.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/GlobalFunctions.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/IO.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/Inverse.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/Map.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/MapBase.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/MathFunctions.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/MathFunctionsImpl.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/Matrix.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/MatrixBase.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/NestByValue.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/NoAlias.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/NumTraits.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/PermutationMatrix.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/PlainObjectBase.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/Product.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/ProductEvaluators.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/Random.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/Redux.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/Ref.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/Replicate.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/ReturnByValue.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/Reverse.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/Select.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/SelfAdjointView.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/SelfCwiseBinaryOp.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/Solve.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/SolveTriangular.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/SolverBase.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/StableNorm.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/Stride.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/Swap.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/Transpose.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/Transpositions.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/TriangularMatrix.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/VectorBlock.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/VectorwiseOp.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/Visitor.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/AVX/Complex.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/AVX/MathFunctions.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/AVX/PacketMath.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/AVX/TypeCasting.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/AVX512/MathFunctions.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/AVX512/PacketMath.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/AltiVec/Complex.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/AltiVec/MathFunctions.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/AltiVec/PacketMath.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/CUDA/Complex.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/CUDA/Half.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/CUDA/MathFunctions.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/CUDA/PacketMath.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/CUDA/PacketMathHalf.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/CUDA/TypeCasting.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/Default/ConjHelper.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/Default/Settings.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/NEON/Complex.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/NEON/MathFunctions.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/NEON/PacketMath.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/SSE/Complex.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/SSE/MathFunctions.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/SSE/PacketMath.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/SSE/TypeCasting.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/ZVector/Complex.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/ZVector/MathFunctions.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/ZVector/PacketMath.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/functors/AssignmentFunctors.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/functors/BinaryFunctors.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/functors/NullaryFunctors.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/functors/StlFunctors.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/functors/TernaryFunctors.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/functors/UnaryFunctors.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/GeneralMatrixMatrix.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/GeneralMatrixVector.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/Parallelizer.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/SelfadjointMatrixMatrix.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/SelfadjointMatrixVector.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/SelfadjointProduct.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/SelfadjointRank2Update.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/TriangularMatrixMatrix.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/TriangularMatrixVector.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/TriangularSolverMatrix.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/TriangularSolverVector.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/util/BlasUtil.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/util/Constants.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/util/DisableStupidWarnings.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/util/ForwardDeclarations.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/util/MKL_support.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/util/Macros.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/util/Memory.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/util/Meta.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/util/NonMPL2.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/util/ReenableStupidWarnings.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/util/StaticAssert.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Core/util/XprHelper.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Eigenvalues/ComplexEigenSolver.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Eigenvalues/ComplexSchur.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Eigenvalues/EigenSolver.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h
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Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/SparseLU/SparseLU_column_bmod.h
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Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/SparseQR/SparseQR.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/StlSupport/StdDeque.h
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Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/misc/Image.h
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Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/misc/RealSvd2x2.h
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Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/misc/lapacke_mangling.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/plugins/ArrayCwiseBinaryOps.h
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Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/plugins/BlockMethods.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/plugins/CommonCwiseBinaryOps.h
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Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/plugins/MatrixCwiseBinaryOps.h
Examining data/diamond-aligner-2.0.5/src/lib/Eigen/src/plugins/MatrixCwiseUnaryOps.h
Examining data/diamond-aligner-2.0.5/src/lib/MemoryPool/MemoryPool.h
Examining data/diamond-aligner-2.0.5/src/lib/alp/njn_approx.hpp
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Examining data/diamond-aligner-2.0.5/src/lib/alp/njn_dynprogprobproto.cpp
Examining data/diamond-aligner-2.0.5/src/lib/alp/njn_dynprogprobproto.hpp
Examining data/diamond-aligner-2.0.5/src/lib/alp/njn_function.hpp
Examining data/diamond-aligner-2.0.5/src/lib/alp/njn_integer.hpp
Examining data/diamond-aligner-2.0.5/src/lib/alp/njn_ioutil.cpp
Examining data/diamond-aligner-2.0.5/src/lib/alp/njn_ioutil.hpp
Examining data/diamond-aligner-2.0.5/src/lib/alp/njn_localmaxstat.cpp
Examining data/diamond-aligner-2.0.5/src/lib/alp/njn_localmaxstat.hpp
Examining data/diamond-aligner-2.0.5/src/lib/alp/njn_localmaxstatmatrix.cpp
Examining data/diamond-aligner-2.0.5/src/lib/alp/njn_localmaxstatmatrix.hpp
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Examining data/diamond-aligner-2.0.5/src/lib/alp/njn_localmaxstatutil.hpp
Examining data/diamond-aligner-2.0.5/src/lib/alp/njn_matrix.hpp
Examining data/diamond-aligner-2.0.5/src/lib/alp/njn_memutil.hpp
Examining data/diamond-aligner-2.0.5/src/lib/alp/njn_random.cpp
Examining data/diamond-aligner-2.0.5/src/lib/alp/njn_random.hpp
Examining data/diamond-aligner-2.0.5/src/lib/alp/njn_root.hpp
Examining data/diamond-aligner-2.0.5/src/lib/alp/njn_uniform.hpp
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Examining data/diamond-aligner-2.0.5/src/lib/alp/sls_alignment_evaluer.cpp
Examining data/diamond-aligner-2.0.5/src/lib/alp/sls_alignment_evaluer.hpp
Examining data/diamond-aligner-2.0.5/src/lib/alp/sls_alp.cpp
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Examining data/diamond-aligner-2.0.5/src/lib/alp/sls_alp_data.cpp
Examining data/diamond-aligner-2.0.5/src/lib/alp/sls_alp_data.hpp
Examining data/diamond-aligner-2.0.5/src/lib/alp/sls_alp_regression.cpp
Examining data/diamond-aligner-2.0.5/src/lib/alp/sls_alp_regression.hpp
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Examining data/diamond-aligner-2.0.5/src/lib/alp/sls_alp_sim.hpp
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Examining data/diamond-aligner-2.0.5/src/lib/alp/sls_pvalues.hpp