Flawfinder version 2.0.10, (C) 2001-2019 David A. Wheeler.
Number of rules (primarily dangerous function names) in C/C++ ruleset: 223
Examining data/libmems-1.6.0+4725/libMems/MatchHashEntry.cpp
Examining data/libmems-1.6.0+4725/libMems/LCB.h
Examining data/libmems-1.6.0+4725/libMems/MatchList.h
Examining data/libmems-1.6.0+4725/libMems/DNAMemorySML.h
Examining data/libmems-1.6.0+4725/libMems/DNAFileSML.cpp
Examining data/libmems-1.6.0+4725/libMems/DNAFileSML.h
Examining data/libmems-1.6.0+4725/libMems/TreeUtilities.h
Examining data/libmems-1.6.0+4725/libMems/CompactGappedAlignment.h
Examining data/libmems-1.6.0+4725/libMems/MatchFinder.h
Examining data/libmems-1.6.0+4725/libMems/ParallelMemHash.cpp
Examining data/libmems-1.6.0+4725/libMems/FileSML.h
Examining data/libmems-1.6.0+4725/libMems/SlotAllocator.h
Examining data/libmems-1.6.0+4725/libMems/configuration.h
Examining data/libmems-1.6.0+4725/libMems/SortedMerList.cpp
Examining data/libmems-1.6.0+4725/libMems/Backbone.h
Examining data/libmems-1.6.0+4725/libMems/SparseAbstractMatch.h
Examining data/libmems-1.6.0+4725/libMems/Interval.h
Examining data/libmems-1.6.0+4725/libMems/ProgressiveAligner.h
Examining data/libmems-1.6.0+4725/libMems/SubstitutionMatrix.h
Examining data/libmems-1.6.0+4725/libMems/Matrix.h