Flawfinder version 2.0.10, (C) 2001-2019 David A. Wheeler.
Number of rules (primarily dangerous function names) in C/C++ ruleset: 223
Examining data/libsbml-5.18.0+dfsg/examples/c++/convertSBML.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/printSBML.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/qual/qual_example1.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/addModelHistory.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/printSupported.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/printNotes.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/getAllElementsWithNotes.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/translateMath.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/translateL3Math.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/util.c
Examining data/libsbml-5.18.0+dfsg/examples/c++/unsetNotes.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/printMath.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/addCustomValidator.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/stripPackage.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/layout/convertLayout.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/layout/addLayout.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/layout/example2-L3.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/layout/example2.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/layout/example3.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/layout/example1.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/layout/example1-L3.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/layout/example3-L3.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/multi/multi_example1.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/multi/multi_example2.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/multi/multi_example3.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/printAnnotation.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/fbc/convertFbcV1ToV2.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/fbc/convertFbcV2ToV1.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/fbc/convertCobraToFbc.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/fbc/convertFbcToCobra.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/fbc/fbc_example1.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/addCVTerms.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/render/convertLayout.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/render/removeRenderInformation.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/render/printRenderInformation.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/render/addRenderInformation.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/inlineFunctionDefintions.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/groups/groups_example2.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/groups/groups_example1.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/comp/spec_example2.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/comp/spec_example3.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/comp/spec_example1.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/comp/flattenModelAdvanced.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/comp/spec_example4.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/comp/flattenModel.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/comp/SBMLHttpResolverExample.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/setIdFromNames.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/rngvalidator.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/dyn/dyn_example2.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/dyn/dyn_example1.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/callExternalValidator.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/validateSBML.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/distrib/createTestSuiteModels.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/distrib/distrib_example1.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/req/example1.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/promoteParameters.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/createExampleSBML.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/arrays/arrays_example3.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/arrays/arrays_example2.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/arrays/arrays_example1.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/util.h
Examining data/libsbml-5.18.0+dfsg/examples/c++/printRegisteredPackages.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/renameSId.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/echoSBML.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/printUnits.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/addingEvidenceCodes_1.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/convertToL1V1.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/readSBML.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/convertReactions.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/unsetAnnotation.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/spatial/example1.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/setNamesFromIds.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/addingEvidenceCodes_2.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/appendAnnotation.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c++/inferUnits.cpp
Examining data/libsbml-5.18.0+dfsg/examples/c/unsetAnnotation.c
Examining data/libsbml-5.18.0+dfsg/examples/c/printSBML.c
Examining data/libsbml-5.18.0+dfsg/examples/c/createExampleSBML.c
Examining data/libsbml-5.18.0+dfsg/examples/c/promoteParameters.c
Examining data/libsbml-5.18.0+dfsg/examples/c/util.c
Examining data/libsbml-5.18.0+dfsg/examples/c/addingEvidenceCodes_1.c
Examining data/libsbml-5.18.0+dfsg/examples/c/translateL3Math.c
Examining data/libsbml-5.18.0+dfsg/examples/c/validateSBML.c
Examining data/libsbml-5.18.0+dfsg/examples/c/printMath.c
Examining data/libsbml-5.18.0+dfsg/examples/c/addCVTerms.c
Examining data/libsbml-5.18.0+dfsg/examples/c/fbc/fbc_example1.c
Examining data/libsbml-5.18.0+dfsg/examples/c/fbc/fbc_example1_v2.c
Examining data/libsbml-5.18.0+dfsg/examples/c/FormulaGraphvizFormatter.h
Examining data/libsbml-5.18.0+dfsg/examples/c/addingEvidenceCodes_2.c
Examining data/libsbml-5.18.0+dfsg/examples/c/groups/groups_example1.c
Examining data/libsbml-5.18.0+dfsg/examples/c/comp/flattenModel.c
Examining data/libsbml-5.18.0+dfsg/examples/c/comp/spec_example1.c
Examining data/libsbml-5.18.0+dfsg/examples/c/convertSBML.c
Examining data/libsbml-5.18.0+dfsg/examples/c/addModelHistory.c
Examining data/libsbml-5.18.0+dfsg/examples/c/printRegisteredPackages.c
Examining data/libsbml-5.18.0+dfsg/examples/c/readSBML.c
Examining data/libsbml-5.18.0+dfsg/examples/c/stripPackage.c
Examining data/libsbml-5.18.0+dfsg/examples/c/util.h
Examining data/libsbml-5.18.0+dfsg/examples/c/printUnits.c
Examining data/libsbml-5.18.0+dfsg/examples/c/printSupported.c
Examining data/libsbml-5.18.0+dfsg/examples/c/translateMath.c
Examining data/libsbml-5.18.0+dfsg/examples/c/printAnnotation.c
Examining data/libsbml-5.18.0+dfsg/examples/c/echoSBML.c
Examining data/libsbml-5.18.0+dfsg/examples/c/evaluateMath.c
Examining data/libsbml-5.18.0+dfsg/examples/c/drawMath.c
Examining data/libsbml-5.18.0+dfsg/examples/c/unsetNotes.c
Examining data/libsbml-5.18.0+dfsg/examples/c/appendAnnotation.c
Examining data/libsbml-5.18.0+dfsg/examples/c/printNotes.c
Examining data/libsbml-5.18.0+dfsg/src/sbml/SBMLNamespaces.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/LocalParameter.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/UnitDefinition.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/CompartmentType.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/UnitDefinition.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/ListOf.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/SBMLErrorLog.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/SBase.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/KineticLaw.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/compress/CompressCommon.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/compress/OutputCompressor.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/compress/CompressCommon.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/compress/unzip.c
Examining data/libsbml-5.18.0+dfsg/src/sbml/compress/zip.c
Examining data/libsbml-5.18.0+dfsg/src/sbml/compress/zipfstream.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/compress/bzfstream.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/compress/iowin32.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/compress/ioapi.c
Examining data/libsbml-5.18.0+dfsg/src/sbml/compress/bzfstream.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/compress/ioapi_mem.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/compress/zfstream.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/compress/zfstream.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/compress/crypt.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/compress/zip.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/compress/unzip.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/compress/ioapi_mem.c
Examining data/libsbml-5.18.0+dfsg/src/sbml/compress/zipfstream.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/compress/OutputCompressor.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/compress/InputDecompressor.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/compress/ioapi.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/compress/iowin32.c
Examining data/libsbml-5.18.0+dfsg/src/sbml/compress/InputDecompressor.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/Compartment.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/Species.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/OverdeterminedValidator.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/L2v3CompatibilityValidator.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/StrictUnitConsistencyValidator.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/SBMLInternalValidator.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/SBMLExternalValidator.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/SBMLValidator.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/IdentifierConsistencyValidator.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/test/TestFile.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/test/TestValidator.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/test/TestFile.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/test/TestValidator.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/test/TestConsistencyValidator.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/test/tps/dirent.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/test/tps/dirent.c
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/MathMLConsistencyConstraints.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/FunctionReferredToExists.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/KineticLawVars.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/UniqueIdBase.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/UnitsBase.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/EqualityArgsMathCheck.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/FunctionReferredToExists.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/LambdaMathCheck.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/SpeciesReactionOrRule.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/OverDeterminedCheck.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/RateOfCycles.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/FunctionApplyMathCheck.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/StoichiometryMathVars.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/ExponentUnitsCheck.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/L2v1CompatibilityConstraintsDeclared.cxx
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/L3v1CompatibilityConstraintsDeclared.cxx
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/PiecewiseValueMathCheck.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/UniqueMetaId.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/KineticLawUnitsCheck.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/L1CompatibilityConstraints.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/RateOfCiTargetMathCheck.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/UnitConsistencyConstraints.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/SBOConsistencyConstraintsDeclared.cxx
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/UniqueMetaId.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/L2v2CompatibilityConstraintsDeclared.cxx
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/LocalParameterMathCheck.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/L3v2CompatibilityConstraintsDeclared.cxx
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/PieceBooleanMathCheck.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/IdBase.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/UnitConsistencyConstraintsDeclared.cxx
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/CiElementNot0DComp.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/FunctionApplyMathCheck.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/IdNameNewOnSBase.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/FunctionDefinitionRecursion.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/MathMLBase.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/PowerUnitsCheck.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/ConsistencyConstraints.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/UniqueVarsInRules.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/AssignmentCycles.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/LogicalArgsMathCheck.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/ModelingPracticeConstraints.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/SBOConsistencyConstraints.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/RateOfCycles.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/L3v2CompatibilityConstraints.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/UniqueIdsInModel.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/L1CompatibilityConstraintsDeclared.cxx
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/LambdaMathCheck.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/StrictUnitConsistencyConstraintsDeclared.cxx
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/FunctionDefinitionVars.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/IdentifierConsistencyConstraintsDeclared.cxx
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/L2v4CompatibilityConstraintsDeclared.cxx
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/RateOfAssignmentMathCheck.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/ArgumentsUnitsCheck.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/PieceBooleanMathCheck.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/MathMLConsistencyConstraintsDeclared.cxx
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/CompartmentOutsideCycles.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/ModelUnitsDangling.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/KineticLawUnitsCheck.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/SpeciesReactionOrRule.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/NumericReturnMathCheck.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/ValidCnUnitsValue.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/IdNameNewOnSBase.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/ExponentUnitsCheck.cpp
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/IdBase.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/NumericArgsMathCheck.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/ReportEmptyListOf.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/StoichiometryMathVars.h
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/ModelingPracticeConstraintsDeclared.cxx
Examining data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/CompatibilityConstraints.cxx
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Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-extension-dyn.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-plugins-fbc.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-astplugins-l3v2extendedmath.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-extension-layout.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-packages-dyn.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-namespaces-l3v2extendedmath.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-plugins-spatial.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-namespaces-distrib.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-namespaces-dyn.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-plugins-layout.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-extension-spatial.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-packages-groups.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-namespaces-layout.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-packages-spatial.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-packages-render.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-astplugins-arrays.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-packages-qual.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-converters-fbc.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-extension-multi.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-astplugins-distrib.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-packages-distrib.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-extension-comp.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-extension-distrib.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-plugins-comp.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-plugins-l3v2extendedmath.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-extension-groups.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-extension-render.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-namespaces-arrays.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-plugins-arrays.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-astplugins-multi.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-packages-comp.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-extension-l3v2extendedmath.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-plugins-qual.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-extension-qual.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-packages-l3v2extendedmath.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-converters-comp.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-converters-layout.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-plugins-req.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-namespaces-comp.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-namespaces-multi.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-packages-arrays.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-namespaces-req.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-extension-arrays.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-packages-multi.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-packages-req.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/r/local-downcast-extension-req.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/java/libsbml_wrap.h
Examining data/libsbml-5.18.0+dfsg/src/bindings/java/local.cpp
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Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-converters-qual.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-namespaces-fbc.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-extension-fbc.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-plugins-render.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-namespaces-qual.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-namespaces-render.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-plugins-dyn.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-plugins-multi.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-namespaces-spatial.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-plugins-distrib.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-packages-layout.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-packages-fbc.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-namespaces-groups.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-plugins-groups.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-extension-dyn.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-plugins-fbc.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-astplugins-l3v2extendedmath.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-extension-layout.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-packages-dyn.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-namespaces-l3v2extendedmath.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-plugins-spatial.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-namespaces-distrib.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-namespaces-dyn.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-plugins-layout.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-extension-spatial.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-packages-groups.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-namespaces-layout.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-packages-spatial.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-packages-render.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-astplugins-arrays.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-packages-qual.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-converters-fbc.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-extension-multi.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-astplugins-distrib.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-packages-distrib.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-extension-comp.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-extension-distrib.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-plugins-comp.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-plugins-l3v2extendedmath.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-extension-groups.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-extension-render.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-namespaces-arrays.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-plugins-arrays.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-astplugins-multi.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-packages-comp.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-extension-l3v2extendedmath.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-plugins-qual.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-extension-qual.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-packages-l3v2extendedmath.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-converters-comp.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-converters-layout.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-plugins-req.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-namespaces-comp.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-namespaces-multi.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-packages-arrays.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-namespaces-req.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-extension-arrays.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-packages-multi.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-packages-req.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/php/local-downcast-extension-req.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/matlab/OutputSBML.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/matlab/TranslateSBML.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/csharp/libsbml_wrap-win.cpp
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Examining data/libsbml-5.18.0+dfsg/src/bindings/csharp/local.cpp
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Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-converters-qual.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-namespaces-fbc.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-extension-fbc.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-plugins-render.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-namespaces-qual.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-namespaces-render.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-plugins-dyn.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-plugins-multi.cpp
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Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-plugins-distrib.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-packages-layout.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-packages-fbc.cpp
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Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-extension-dyn.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-plugins-fbc.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-astplugins-l3v2extendedmath.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-extension-layout.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-packages-dyn.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-namespaces-l3v2extendedmath.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-plugins-spatial.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-namespaces-distrib.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-namespaces-dyn.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-plugins-layout.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-extension-spatial.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-packages-groups.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-namespaces-layout.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-packages-spatial.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-packages-render.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-astplugins-arrays.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-packages-qual.cpp
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Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-extension-comp.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-extension-distrib.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-plugins-comp.cpp
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Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-extension-render.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-namespaces-arrays.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-plugins-arrays.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/javascript/local-downcast-astplugins-multi.cpp
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Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-packages-render.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-astplugins-arrays.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-packages-qual.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-converters-fbc.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-extension-multi.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-astplugins-distrib.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-packages-distrib.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-extension-comp.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-extension-distrib.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-plugins-comp.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-plugins-l3v2extendedmath.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-extension-groups.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-extension-render.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-namespaces-arrays.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-plugins-arrays.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-astplugins-multi.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-packages-comp.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-extension-l3v2extendedmath.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-plugins-qual.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-extension-qual.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-packages-l3v2extendedmath.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-converters-comp.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-converters-layout.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-plugins-req.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-namespaces-comp.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-namespaces-multi.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-packages-arrays.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-namespaces-req.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-extension-arrays.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-packages-multi.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-packages-req.cpp
Examining data/libsbml-5.18.0+dfsg/src/bindings/ruby/local-downcast-extension-req.cpp

FINAL RESULTS:

data/libsbml-5.18.0+dfsg/examples/c++/rngvalidator.cpp:64:3:  [4] (format) vsprintf:
  Potential format string problem (CWE-134). Make format string constant.
  vsprintf (buffer,msg, args);
data/libsbml-5.18.0+dfsg/examples/c++/rngvalidator.cpp:74:3:  [4] (format) vsprintf:
  Potential format string problem (CWE-134). Make format string constant.
  vsprintf (buffer,msg, args);
data/libsbml-5.18.0+dfsg/examples/c/util.c:186:5:  [4] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused).
    strcat( line, s );
data/libsbml-5.18.0+dfsg/src/bindings/matlab/OutputSBML.cpp:2541:3:  [4] (buffer) wcscpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using a function version that stops copying at the end
  of the buffer.
  wcscpy(pacFilename, pacTempString2);
data/libsbml-5.18.0+dfsg/src/bindings/matlab/OutputSBML.cpp:2542:3:  [4] (buffer) wcscat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120).
  wcscat(pacFilename, pacTempString1);
data/libsbml-5.18.0+dfsg/src/bindings/matlab/OutputSBML.cpp:2545:3:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
  strcpy(pacFilename, pacTempString2);
data/libsbml-5.18.0+dfsg/src/bindings/matlab/OutputSBML.cpp:2546:3:  [4] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused).
  strcat(pacFilename, pacTempString1);
data/libsbml-5.18.0+dfsg/src/bindings/matlab/OutputSBML.cpp:3028:7:  [4] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf.
      sprintf(msgTxt, "File %s does not exist on this path", filename);
data/libsbml-5.18.0+dfsg/src/bindings/matlab/TranslateSBML.cpp:2540:3:  [4] (buffer) wcscpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using a function version that stops copying at the end
  of the buffer.
  wcscpy(pacFilename, pacTempString2);
data/libsbml-5.18.0+dfsg/src/bindings/matlab/TranslateSBML.cpp:2541:3:  [4] (buffer) wcscat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120).
  wcscat(pacFilename, pacTempString1);
data/libsbml-5.18.0+dfsg/src/bindings/matlab/TranslateSBML.cpp:2544:3:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
  strcpy(pacFilename, pacTempString2);
data/libsbml-5.18.0+dfsg/src/bindings/matlab/TranslateSBML.cpp:2545:3:  [4] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused).
  strcat(pacFilename, pacTempString1);
data/libsbml-5.18.0+dfsg/src/bindings/matlab/TranslateSBML.cpp:3027:7:  [4] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf.
      sprintf(msgTxt, "File %s does not exist on this path", filename);
data/libsbml-5.18.0+dfsg/src/bindings/perl/LibSBML_wrap.cxx:691:3:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
  strcpy(r,name);
data/libsbml-5.18.0+dfsg/src/bindings/perl/LibSBML_wrap.cxx:1278:3:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
  strcpy(r,SWIG_Perl_TypeProxyName(type));
data/libsbml-5.18.0+dfsg/src/bindings/perl/LibSBML_wrap.cxx:1506:8:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
#ifdef access
data/libsbml-5.18.0+dfsg/src/bindings/perl/LibSBML_wrap.cxx:1507:10:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
  #undef access
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:701:3:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
  strcpy(r,name);
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:841:25:  [4] (format) _snprintf:
  If format strings can be influenced by an attacker, they can be exploited,
  and note that sprintf variations do not always \0-terminate (CWE-134). Use
  a constant for the format specification.
#  define PyOS_snprintf _snprintf
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:843:25:  [4] (format) snprintf:
  If format strings can be influenced by an attacker, they can be exploited,
  and note that sprintf variations do not always \0-terminate (CWE-134). Use
  a constant for the format specification.
#  define PyOS_snprintf snprintf
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:860:9:  [4] (format) vsnprintf:
  If format strings can be influenced by an attacker, they can be exploited,
  and note that sprintf variations do not always \0-terminate (CWE-134). Use
  a constant for the format specification.
  res = vsnprintf(buf, sizeof(buf), fmt, ap);
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:814:3:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
  strcpy(r,name);
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:1516:3:  [4] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf.
  sprintf(klass_name, "TYPE%s", type->name);
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:1572:5:  [4] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf.
    sprintf(klass_name, "TYPE%s", type->name);
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:1722:3:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
  strcpy(r, type->name);
data/libsbml-5.18.0+dfsg/src/sbml/UnitDefinition.cpp:1567:9:  [4] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf.
        sprintf(unit, "%s (exponent = %g, multiplier = %.6g, scale = %i)", 
data/libsbml-5.18.0+dfsg/src/sbml/UnitDefinition.cpp:1588:9:  [4] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf.
        sprintf(unit, "(%.6g %s)^%g", mult,  
data/libsbml-5.18.0+dfsg/src/sbml/annotation/Date.cpp:46:9:  [4] (format) snprintf:
  If format strings can be influenced by an attacker, they can be exploited,
  and note that sprintf variations do not always \0-terminate (CWE-134). Use
  a constant for the format specification.
#define snprintf c99_snprintf
data/libsbml-5.18.0+dfsg/src/sbml/annotation/Date.cpp:47:9:  [4] (format) vsnprintf:
  If format strings can be influenced by an attacker, they can be exploited,
  and note that sprintf variations do not always \0-terminate (CWE-134). Use
  a constant for the format specification.
#define vsnprintf c99_vsnprintf
data/libsbml-5.18.0+dfsg/src/sbml/annotation/test/TestRunner.c:105:5:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    strcpy(TestDataDirectory, srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/compress/ioapi.c:20:11:  [4] (format) snprintf:
  If format strings can be influenced by an attacker, they can be exploited,
  and note that sprintf variations do not always \0-terminate (CWE-134). Use
  a constant for the format specification.
#  define snprintf _snprintf
data/libsbml-5.18.0+dfsg/src/sbml/compress/ioapi.c:20:20:  [4] (format) _snprintf:
  If format strings can be influenced by an attacker, they can be exploited,
  and note that sprintf variations do not always \0-terminate (CWE-134). Use
  a constant for the format specification.
#  define snprintf _snprintf
data/libsbml-5.18.0+dfsg/src/sbml/conversion/test/TestRunner.c:101:5:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    strcpy(TestDataDirectory, srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/extension/test/TestRunner.c:98:5:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    strcpy(TestDataDirectory, srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/math/L3Parser.cpp:964:21:  [4] (format) fprintf:
  If format strings can be influenced by an attacker, they can be exploited
  (CWE-134). Use a constant for the format specification.
#  define YYFPRINTF fprintf
data/libsbml-5.18.0+dfsg/src/sbml/math/test/TestRunner.c:108:5:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    strcpy(TestDataDirectory, srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/arrays/extension/test/TestRunner.cpp:64:5:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    strcpy(TestDataDirectory, srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/arrays/util/test/TestRunner.cpp:155:5:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    strcpy(TestDataDirectory, srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/extension/test/TestRunner.c:87:5:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    strcpy(TestDataDirectory, srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestRunner.c:95:5:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    strcpy(TestDataDirectory, srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/util/test/TestRunner.c:162:5:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    strcpy(TestDataDirectory, srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/distrib/extension/test/TestRunner.cpp:89:5:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    strcpy(TestDataDirectory, srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/distrib/sbml/test/TestRunner.cpp:86:5:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    strcpy(TestDataDirectory, srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/distrib/util/test/TestRunner.cpp:155:5:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    strcpy(TestDataDirectory, srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/dyn/extension/test/TestRunner.c:59:5:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    strcpy(TestDataDirectory, srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/fbc/extension/test/TestRunner.c:60:5:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    strcpy(TestDataDirectory, srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/groups/extension/test/TestRunner.c:72:5:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    strcpy(TestDataDirectory, srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/l3v2extendedmath/extension/test/TestRunner.c:78:5:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    strcpy(TestDataDirectory, srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/layout/sbml/test/TestRunner.c:109:5:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    strcpy(TestDataDirectory, srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/multi/extension/test/TestRunner.c:60:5:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    strcpy(TestDataDirectory, srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/multi/sbml/test/TestRunner.c:87:5:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    strcpy(TestDataDirectory, srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/qual/extension/test/TestRunner.c:81:5:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    strcpy(TestDataDirectory, srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/qual/sbml/test/TestRunner.c:89:5:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    strcpy(TestDataDirectory, srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/render/sbml/test/TestRunner.c:130:5:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    strcpy(TestDataDirectory, srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/req/extension/test/TestRunner.c:60:5:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    strcpy(TestDataDirectory, srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/spatial/extension/test/TestRunner.c:58:5:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    strcpy(TestDataDirectory, srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/spatial/sbml/test/TestRunner.c:86:5:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    strcpy(TestDataDirectory, srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/test/TestRunner.c:207:5:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    strcpy(TestDataDirectory, srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/units/test/TestRunner.c:100:5:  [4] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    strcpy(TestDataDirectory, srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/util/Stack.c:51:1:  [4] (format) fprintf:
  If format strings can be influenced by an attacker, they can be exploited
  (CWE-134). Use a constant for the format specification.
fprintf( stderr, \
data/libsbml-5.18.0+dfsg/src/sbml/util/StringBuffer.c:131:11:  [4] (format) vsnprintf:
  If format strings can be influenced by an attacker, they can be exploited,
  and note that sprintf variations do not always \0-terminate (CWE-134). Use
  a constant for the format specification.
#  define vsnprintf _vsnprintf
data/libsbml-5.18.0+dfsg/src/sbml/util/memory.c:82:5:  [4] (format) fprintf:
  If format strings can be influenced by an attacker, they can be exploited
  (CWE-134). Use a constant for the format specification.
    fprintf(stderr, MSG_OUT_OF_MEMORY);
data/libsbml-5.18.0+dfsg/src/sbml/util/memory.c:106:5:  [4] (format) fprintf:
  If format strings can be influenced by an attacker, they can be exploited
  (CWE-134). Use a constant for the format specification.
    fprintf(stderr, MSG_OUT_OF_MEMORY);
data/libsbml-5.18.0+dfsg/src/sbml/util/memory.c:130:5:  [4] (format) fprintf:
  If format strings can be influenced by an attacker, they can be exploited
  (CWE-134). Use a constant for the format specification.
    fprintf(stderr, MSG_OUT_OF_MEMORY);
data/libsbml-5.18.0+dfsg/src/sbml/util/test/TestUtil.c:40:9:  [4] (format) snprintf:
  If format strings can be influenced by an attacker, they can be exploited,
  and note that sprintf variations do not always \0-terminate (CWE-134). Use
  a constant for the format specification.
#define snprintf _snprintf
data/libsbml-5.18.0+dfsg/src/sbml/util/test/TestUtil.c:40:18:  [4] (format) _snprintf:
  If format strings can be influenced by an attacker, they can be exploited,
  and note that sprintf variations do not always \0-terminate (CWE-134). Use
  a constant for the format specification.
#define snprintf _snprintf
data/libsbml-5.18.0+dfsg/src/sbml/util/util.cpp:119:11:  [4] (format) vsnprintf:
  If format strings can be influenced by an attacker, they can be exploited,
  and note that sprintf variations do not always \0-terminate (CWE-134). Use
  a constant for the format specification.
#  define vsnprintf _vsnprintf
data/libsbml-5.18.0+dfsg/src/sbml/util/util.cpp:129:12:  [4] (format) vsnprintf:
  If format strings can be influenced by an attacker, they can be exploited,
  and note that sprintf variations do not always \0-terminate (CWE-134). Use
  a constant for the format specification.
  result = vsnprintf(str, size, format, ap);
data/libsbml-5.18.0+dfsg/src/sbml/util/util.cpp:175:5:  [4] (format) fprintf:
  If format strings can be influenced by an attacker, they can be exploited
  (CWE-134). Use a constant for the format specification.
    fprintf(stderr, format, PACKAGE_NAME, filename, modestr);
data/libsbml-5.18.0+dfsg/src/sbml/validator/SBMLExternalValidator.cpp:218:7:  [4] (shell) execvp:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
		if (execvp("/bin/sh", argv) > -1) // Only returns on failure.
data/libsbml-5.18.0+dfsg/src/sbml/validator/test/tps/dirent.c:105:5:  [4] (buffer) lstrcpyA:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
    lstrcpyA(search_spec, name);
data/libsbml-5.18.0+dfsg/src/sbml/validator/test/tps/dirent.c:108:9:  [4] (buffer) lstrcatA:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120).
        lstrcatA(search_spec, "\\*.*");
data/libsbml-5.18.0+dfsg/src/sbml/validator/test/tps/dirent.c:112:9:  [4] (buffer) lstrcatA:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120).
        lstrcatA(search_spec, "*.*");
data/libsbml-5.18.0+dfsg/src/sbml/validator/test/tps/dirent.c:160:17:  [4] (buffer) lstrcpyA:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
                lstrcpyA(result->directory, name);
data/libsbml-5.18.0+dfsg/src/sbml/validator/test/tps/dirent.c:161:17:  [4] (buffer) lstrcpyA:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
                lstrcpyA(result->dirent.d_name, result->find_data.cFileName);
data/libsbml-5.18.0+dfsg/src/sbml/validator/test/tps/dirent.c:207:9:  [4] (buffer) lstrcpyA:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
        lstrcpyA(dir->dirent.d_name, dir->find_data.cFileName);
data/libsbml-5.18.0+dfsg/src/sbml/validator/test/tps/dirent.c:225:9:  [4] (buffer) lstrcpyA:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused).
        lstrcpyA(dir->dirent.d_name, dir->find_data.cFileName);
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:2088:30:  [3] (misc) EnterCriticalSection:
  On some versions of Windows, exceptions can be thrown in low-memory
  situations. Use InitializeCriticalSectionAndSpinCount instead.
#  define pthread_mutex_lock EnterCriticalSection
data/libsbml-5.18.0+dfsg/src/sbml/annotation/test/TestRunner.c:94:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/compress/bzfstream.cpp:433:11:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    this->setstate(std::ios_base::failbit);
data/libsbml-5.18.0+dfsg/src/sbml/compress/bzfstream.cpp:444:11:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    this->setstate(std::ios_base::failbit);
data/libsbml-5.18.0+dfsg/src/sbml/compress/bzfstream.cpp:454:11:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    this->setstate(std::ios_base::failbit);
data/libsbml-5.18.0+dfsg/src/sbml/compress/bzfstream.cpp:488:11:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    this->setstate(std::ios_base::failbit);
data/libsbml-5.18.0+dfsg/src/sbml/compress/bzfstream.cpp:499:11:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    this->setstate(std::ios_base::failbit);
data/libsbml-5.18.0+dfsg/src/sbml/compress/bzfstream.cpp:509:11:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    this->setstate(std::ios_base::failbit);
data/libsbml-5.18.0+dfsg/src/sbml/compress/crypt.h:111:9:  [3] (random) srand:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
        srand((unsigned)(time(NULL) ^ ZCR_SEED2));
data/libsbml-5.18.0+dfsg/src/sbml/compress/zfstream.cpp:403:11:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    this->setstate(std::ios_base::failbit);
data/libsbml-5.18.0+dfsg/src/sbml/compress/zfstream.cpp:414:11:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    this->setstate(std::ios_base::failbit);
data/libsbml-5.18.0+dfsg/src/sbml/compress/zfstream.cpp:424:11:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    this->setstate(std::ios_base::failbit);
data/libsbml-5.18.0+dfsg/src/sbml/compress/zfstream.cpp:458:11:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    this->setstate(std::ios_base::failbit);
data/libsbml-5.18.0+dfsg/src/sbml/compress/zfstream.cpp:469:11:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    this->setstate(std::ios_base::failbit);
data/libsbml-5.18.0+dfsg/src/sbml/compress/zfstream.cpp:479:11:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    this->setstate(std::ios_base::failbit);
data/libsbml-5.18.0+dfsg/src/sbml/compress/zipfstream.cpp:462:11:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    this->setstate(std::ios_base::failbit);
data/libsbml-5.18.0+dfsg/src/sbml/compress/zipfstream.cpp:472:11:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    this->setstate(std::ios_base::failbit);
data/libsbml-5.18.0+dfsg/src/sbml/compress/zipfstream.cpp:497:11:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    this->setstate(std::ios_base::failbit);
data/libsbml-5.18.0+dfsg/src/sbml/compress/zipfstream.cpp:507:11:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    this->setstate(std::ios_base::failbit);
data/libsbml-5.18.0+dfsg/src/sbml/conversion/test/TestRunner.c:90:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/extension/test/TestRunner.c:87:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/math/test/TestRunner.c:97:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/arrays/extension/test/TestRunner.cpp:53:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/arrays/util/test/TestRunner.cpp:144:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/extension/test/TestRunner.c:76:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestRunner.c:84:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/util/test/TestRunner.c:151:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/validator/test/TestCompConsistencyValidator.cpp:158:20:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
    char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/validator/test/TestValidator.cpp:208:19:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  const char* s = getenv("LIBSBML_TEST_VALIDATOR_VERBOSE");
data/libsbml-5.18.0+dfsg/src/sbml/packages/distrib/extension/test/TestRunner.cpp:78:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/distrib/sbml/test/TestRunner.cpp:75:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/distrib/util/test/TestRunner.cpp:144:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/distrib/validator/test/TestDistribConsistencyValidator.cpp:140:20:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
    char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/distrib/validator/test/TestValidator.cpp:211:19:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  const char* s = getenv("LIBSBML_TEST_VALIDATOR_VERBOSE");
data/libsbml-5.18.0+dfsg/src/sbml/packages/dyn/extension/test/TestRunner.c:48:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/fbc/extension/test/TestRunner.c:49:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/fbc/validator/test/TestFbcConsistencyValidator.cpp:140:20:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
    char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/fbc/validator/test/TestValidator.cpp:211:19:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  const char* s = getenv("LIBSBML_TEST_VALIDATOR_VERBOSE");
data/libsbml-5.18.0+dfsg/src/sbml/packages/groups/extension/test/TestRunner.c:61:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/groups/validator/test/TestGroupsConsistencyValidator.cpp:140:20:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
    char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/groups/validator/test/TestValidator.cpp:211:19:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  const char* s = getenv("LIBSBML_TEST_VALIDATOR_VERBOSE");
data/libsbml-5.18.0+dfsg/src/sbml/packages/l3v2extendedmath/extension/test/TestRunner.c:67:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/l3v2extendedmath/validator/test/TestL3v2MathConsistencyValidator.cpp:152:20:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
    char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/l3v2extendedmath/validator/test/TestValidator.cpp:208:19:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  const char* s = getenv("LIBSBML_TEST_VALIDATOR_VERBOSE");
data/libsbml-5.18.0+dfsg/src/sbml/packages/layout/sbml/test/TestRunner.c:98:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/layout/validator/test/TestLayoutConsistencyValidator.cpp:147:20:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
    char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/layout/validator/test/TestValidator.cpp:218:19:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  const char* s = getenv("LIBSBML_TEST_VALIDATOR_VERBOSE");
data/libsbml-5.18.0+dfsg/src/sbml/packages/multi/extension/test/TestRunner.c:49:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/multi/sbml/test/TestRunner.c:76:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/multi/validator/test/TestMultiConsistencyValidator.cpp:170:20:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
    char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/multi/validator/test/TestValidator.cpp:208:19:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  const char* s = getenv("LIBSBML_TEST_VALIDATOR_VERBOSE");
data/libsbml-5.18.0+dfsg/src/sbml/packages/qual/extension/test/TestRunner.c:70:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/qual/sbml/test/TestRunner.c:78:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/qual/validator/test/TestQualConsistencyValidator.cpp:160:20:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
    char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/qual/validator/test/TestValidator.cpp:218:19:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  const char* s = getenv("LIBSBML_TEST_VALIDATOR_VERBOSE");
data/libsbml-5.18.0+dfsg/src/sbml/packages/render/sbml/test/TestRunner.c:119:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/render/validator/test/TestRenderConsistencyValidator.cpp:147:20:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
    char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/render/validator/test/TestValidator.cpp:218:19:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  const char* s = getenv("LIBSBML_TEST_VALIDATOR_VERBOSE");
data/libsbml-5.18.0+dfsg/src/sbml/packages/req/extension/test/TestRunner.c:49:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/spatial/extension/test/TestRunner.c:47:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/spatial/sbml/test/TestRunner.c:75:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/spatial/validator/test/TestSpatialConsistencyValidator.cpp:140:20:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
    char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/packages/spatial/validator/test/TestValidator.cpp:211:19:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  const char* s = getenv("LIBSBML_TEST_VALIDATOR_VERBOSE");
data/libsbml-5.18.0+dfsg/src/sbml/test/TestRunner.c:196:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/units/test/TestRunner.c:89:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/validator/SBMLExternalValidator.cpp:194:7:  [3] (shell) CreateProcess:
  This causes a new process to execute and is difficult to use safely
  (CWE-78). Specify the application path in the first argument, NOT as part
  of the second, or embedded spaces could allow an attacker to force a
  different program to run.
  if(!CreateProcess(NULL, (LPTSTR) (LPCTSTR) commandLine,
data/libsbml-5.18.0+dfsg/src/sbml/validator/SBMLExternalValidator.cpp:194:7:  [3] (shell) CreateProcess:
  This causes a new process to execute and is difficult to use safely
  (CWE-78). Specify the application path in the first argument, NOT as part
  of the second, or embedded spaces could allow an attacker to force a
  different program to run.
  if(!CreateProcess(NULL, (LPTSTR) (LPCTSTR) commandLine,
data/libsbml-5.18.0+dfsg/src/sbml/validator/test/TestConsistencyValidator.cpp:436:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  char *srcdir = getenv("srcdir");
data/libsbml-5.18.0+dfsg/src/sbml/validator/test/TestValidator.cpp:348:19:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
  const char* s = getenv("LIBSBML_TEST_VALIDATOR_VERBOSE");
data/libsbml-5.18.0+dfsg/examples/c++/rngvalidator.cpp:61:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char buffer[1000];
data/libsbml-5.18.0+dfsg/examples/c++/rngvalidator.cpp:71:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char buffer[1000];
data/libsbml-5.18.0+dfsg/examples/c++/translateL3Math.cpp:66:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char            line[BUFFER_SIZE];
data/libsbml-5.18.0+dfsg/examples/c++/translateMath.cpp:65:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char            line[BUFFER_SIZE];
data/libsbml-5.18.0+dfsg/examples/c/drawMath.c:384:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char           number[10];
data/libsbml-5.18.0+dfsg/examples/c/drawMath.c:397:7:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
      sprintf(number, "%d", (int)ASTNode_getInteger(ASTNode_getChild(node, 0)));
data/libsbml-5.18.0+dfsg/examples/c/drawMath.c:402:7:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
      sprintf(number, "%ld", ASTNode_getNumerator(ASTNode_getChild(node, 0)));
data/libsbml-5.18.0+dfsg/examples/c/drawMath.c:917:16:  [2] (misc) fopen:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  if ((fout  = fopen( argv[2], "w" )) == NULL )
data/libsbml-5.18.0+dfsg/examples/c/util.c:174:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char s[INPUT_LINE_LENGTH], *line, *cp;
data/libsbml-5.18.0+dfsg/src/bindings/csharp/libsbml_wrap-win.cpp:1540:11:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  (arg1)->open((std::string const &)*arg2,arg3);
data/libsbml-5.18.0+dfsg/src/bindings/csharp/libsbml_wrap-win.cpp:1558:11:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  (arg1)->open((std::string const &)*arg2);
data/libsbml-5.18.0+dfsg/src/bindings/csharp/libsbml_wrap.cpp:1531:11:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  (arg1)->open((std::string const &)*arg2,arg3);
data/libsbml-5.18.0+dfsg/src/bindings/csharp/libsbml_wrap.cpp:1546:11:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  (arg1)->open((std::string const &)*arg2);
data/libsbml-5.18.0+dfsg/src/bindings/csharp/local.cpp:159:12:  [2] (buffer) MultiByteToWideChar:
  Requires maximum length in CHARACTERS, not bytes (CWE-120).
  length = MultiByteToWideChar(CP_UTF8, 0, (LPCSTR)src_str, -1, NULL, 0);
data/libsbml-5.18.0+dfsg/src/bindings/csharp/local.cpp:167:14:  [2] (buffer) MultiByteToWideChar:
  Requires maximum length in CHARACTERS, not bytes (CWE-120).
  c_length = MultiByteToWideChar(CP_UTF8, 0, (LPCSTR)src_str, -1, wbuf, length);
data/libsbml-5.18.0+dfsg/src/bindings/csharp/local.cpp:194:12:  [2] (buffer) MultiByteToWideChar:
  Requires maximum length in CHARACTERS, not bytes (CWE-120).
  length = MultiByteToWideChar(CP_ACP, 0, (LPCSTR)src_str, -1, NULL, 0);
data/libsbml-5.18.0+dfsg/src/bindings/csharp/local.cpp:202:14:  [2] (buffer) MultiByteToWideChar:
  Requires maximum length in CHARACTERS, not bytes (CWE-120).
  c_length = MultiByteToWideChar(CP_ACP, 0,(LPCSTR)src_str,-1,wbuf,length);
data/libsbml-5.18.0+dfsg/src/bindings/csharp/local.cpp:255:12:  [2] (buffer) MultiByteToWideChar:
  Requires maximum length in CHARACTERS, not bytes (CWE-120).
  length = MultiByteToWideChar(CP_UTF8, 0, (LPCSTR)src_str, -1, NULL, 0);
data/libsbml-5.18.0+dfsg/src/bindings/csharp/local.cpp:263:14:  [2] (buffer) MultiByteToWideChar:
  Requires maximum length in CHARACTERS, not bytes (CWE-120).
  c_length = MultiByteToWideChar(CP_UTF8, 0,(LPCSTR)src_str,-1,wbuf,length);
data/libsbml-5.18.0+dfsg/src/bindings/java/libsbml_wrap.cpp:2407:11:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  (arg1)->open((std::string const &)*arg2,arg3);
data/libsbml-5.18.0+dfsg/src/bindings/java/libsbml_wrap.cpp:2445:11:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  (arg1)->open((std::string const &)*arg2);
data/libsbml-5.18.0+dfsg/src/bindings/java/local.cpp:164:12:  [2] (buffer) MultiByteToWideChar:
  Requires maximum length in CHARACTERS, not bytes (CWE-120).
  length = MultiByteToWideChar(CP_UTF8, 0, (LPCSTR)src_str, -1, NULL, 0);
data/libsbml-5.18.0+dfsg/src/bindings/java/local.cpp:172:14:  [2] (buffer) MultiByteToWideChar:
  Requires maximum length in CHARACTERS, not bytes (CWE-120).
  c_length = MultiByteToWideChar(CP_UTF8, 0, (LPCSTR)src_str, -1, wbuf, length);
data/libsbml-5.18.0+dfsg/src/bindings/java/local.cpp:199:12:  [2] (buffer) MultiByteToWideChar:
  Requires maximum length in CHARACTERS, not bytes (CWE-120).
  length = MultiByteToWideChar(CP_ACP, 0, (LPCSTR)src_str, -1, NULL, 0);
data/libsbml-5.18.0+dfsg/src/bindings/java/local.cpp:207:14:  [2] (buffer) MultiByteToWideChar:
  Requires maximum length in CHARACTERS, not bytes (CWE-120).
  c_length = MultiByteToWideChar(CP_ACP, 0,(LPCSTR)src_str,-1,wbuf,length);
data/libsbml-5.18.0+dfsg/src/bindings/java/local.cpp:260:12:  [2] (buffer) MultiByteToWideChar:
  Requires maximum length in CHARACTERS, not bytes (CWE-120).
  length = MultiByteToWideChar(CP_UTF8, 0, (LPCSTR)src_str, -1, NULL, 0);
data/libsbml-5.18.0+dfsg/src/bindings/java/local.cpp:268:14:  [2] (buffer) MultiByteToWideChar:
  Requires maximum length in CHARACTERS, not bytes (CWE-120).
  c_length = MultiByteToWideChar(CP_UTF8, 0,(LPCSTR)src_str,-1,wbuf,length);
data/libsbml-5.18.0+dfsg/src/bindings/matlab/OutputSBML.cpp:2481:26:  [2] (misc) fopen:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
#define FILE_FOPEN(file) fopen(file, "r")
data/libsbml-5.18.0+dfsg/src/bindings/matlab/OutputSBML.cpp:2922:7:  [2] (buffer) wcscat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Risk is low because the source is a constant string.
      wcscat(filename, L".xml");
data/libsbml-5.18.0+dfsg/src/bindings/matlab/OutputSBML.cpp:2928:7:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
      strcat(filename, ".xml");
data/libsbml-5.18.0+dfsg/src/bindings/matlab/OutputSBML.cpp:3025:7:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
      sprintf(msgTxt, "File %ws does not exist on this path", filename);
data/libsbml-5.18.0+dfsg/src/bindings/matlab/TranslateSBML.cpp:2480:26:  [2] (misc) fopen:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
#define FILE_FOPEN(file) fopen(file, "r")
data/libsbml-5.18.0+dfsg/src/bindings/matlab/TranslateSBML.cpp:2921:7:  [2] (buffer) wcscat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Risk is low because the source is a constant string.
      wcscat(filename, L".xml");
data/libsbml-5.18.0+dfsg/src/bindings/matlab/TranslateSBML.cpp:2927:7:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
      strcat(filename, ".xml");
data/libsbml-5.18.0+dfsg/src/bindings/matlab/TranslateSBML.cpp:3024:7:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
      sprintf(msgTxt, "File %ws does not exist on this path", filename);
data/libsbml-5.18.0+dfsg/src/bindings/matlab/TranslateSBML.cpp:3241:5:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    char buffer[1024];
data/libsbml-5.18.0+dfsg/src/bindings/perl/LibSBML_wrap.cxx:642:16:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  static const char hex[17] = "0123456789abcdef";
data/libsbml-5.18.0+dfsg/src/bindings/perl/LibSBML_wrap.cxx:1273:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char result[1024];
data/libsbml-5.18.0+dfsg/src/bindings/perl/LibSBML_wrap.cxx:1497:8:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
#ifdef open
data/libsbml-5.18.0+dfsg/src/bindings/perl/LibSBML_wrap.cxx:1498:10:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  #undef open
data/libsbml-5.18.0+dfsg/src/bindings/perl/LibSBML_wrap.cxx:2369:38:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
	  *cptr = reinterpret_cast< char* >(memcpy(new char[size], cstr, sizeof(char)*(size)));
data/libsbml-5.18.0+dfsg/src/bindings/perl/LibSBML_wrap.cxx:2589:13:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
	if (csize) memcpy(val, cptr, csize*sizeof(char));
data/libsbml-5.18.0+dfsg/src/bindings/perl/LibSBML_wrap.cxx:5360:13:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
    (arg1)->open((std::string const &)*arg2,arg3);
data/libsbml-5.18.0+dfsg/src/bindings/perl/LibSBML_wrap.cxx:5404:13:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
    (arg1)->open((std::string const &)*arg2);
data/libsbml-5.18.0+dfsg/src/bindings/perl/LibSBML_wrap.cxx:151100:27:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
      sv_setpv(sv, (const char *) swig_constants[i].pvalue);
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:652:16:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  static const char hex[17] = "0123456789abcdef";
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:813:3:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
  memcpy(newstr, cstr, len+1);
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:857:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char buf[SWIG_PYBUFFER_SIZE * 2];
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:2047:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char result[SWIG_BUFFER_SIZE];
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:2061:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char result[SWIG_BUFFER_SIZE];
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:2072:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char result[SWIG_BUFFER_SIZE];
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:2214:7:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
      memcpy(pack, ptr, size);
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:2232:5:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
    memcpy(ptr, sobj->pack, size);
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:2869:5:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    char mesg[256];
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:4376:38:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
	  *cptr = reinterpret_cast< char* >(memcpy(new char[len + 1], cstr, sizeof(char)*(len + 1)));
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:4414:45:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
          *cptr = reinterpret_cast< char* >(memcpy(new char[len + 1], cstr, sizeof(char)*(len + 1)));
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:4452:13:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
	if (csize) memcpy(val, cptr, csize*sizeof(char));
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:5107:11:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
          char msg[1024];
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:5108:11:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
          sprintf(msg, "attempt to assign sequence of size %lu to extended slice of size %lu", (unsigned long)is.size(), (unsigned long)replacecount);
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:5123:9:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
        char msg[1024];
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:5124:9:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
        sprintf(msg, "attempt to assign sequence of size %lu to extended slice of size %lu", (unsigned long)is.size(), (unsigned long)replacecount);
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:5410:2:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
	char msg[1024];
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:5411:2:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
	sprintf(msg, "in sequence element %d ", (int)_index);
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:5611:6:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
	    char msg[1024];
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:5612:6:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
	    sprintf(msg, "in sequence element %d", (int)i);
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:765:16:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  static const char hex[17] = "0123456789abcdef";
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:1137:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char buf[128];
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:1150:3:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
  sprintf( buf, "%d of type ", argn-1 );
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:1717:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char result[1024];
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:3581:38:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
	  *cptr = reinterpret_cast< char* >(memcpy(new char[size], cstr, sizeof(char)*(size)));
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:3616:13:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
	if (csize) memcpy(val, cptr, csize*sizeof(char));
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:4500:2:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
	char msg[1024];
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:4501:2:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
	sprintf(msg, "in sequence element %d ", _index);
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:4717:6:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
	    char msg[1024];
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:4718:6:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
	    sprintf(msg, "in sequence element %d", i);
data/libsbml-5.18.0+dfsg/src/bindings/swig/OStream.cpp:135:11:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
OFStream::open (const std::string& filename, bool is_append) 
data/libsbml-5.18.0+dfsg/src/bindings/swig/OStream.cpp:138:42:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
    static_cast<std::ofstream*>(Stream)->open(filename.c_str(),std::ios_base::app);
data/libsbml-5.18.0+dfsg/src/bindings/swig/OStream.cpp:141:42:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
    static_cast<std::ofstream*>(Stream)->open(filename.c_str(),std::ios_base::out);
data/libsbml-5.18.0+dfsg/src/bindings/swig/OStream.h:180:10:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
    void open (const std::string& filename, bool is_append = false);
data/libsbml-5.18.0+dfsg/src/sbml/Model.cpp:6706:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char newId[15];
data/libsbml-5.18.0+dfsg/src/sbml/Model.cpp:6712:5:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
    sprintf(newId, "constraint_%u", n);
data/libsbml-5.18.0+dfsg/src/sbml/Model.cpp:6730:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char newId[12];
data/libsbml-5.18.0+dfsg/src/sbml/Model.cpp:6742:7:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
      sprintf(newId, "alg_rule_%u", countAlg);
data/libsbml-5.18.0+dfsg/src/sbml/Model.cpp:6921:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char newId[12];
data/libsbml-5.18.0+dfsg/src/sbml/Model.cpp:6929:5:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
    sprintf(newId, "event_%u", countEvents);
data/libsbml-5.18.0+dfsg/src/sbml/SBMLConvert.cpp:1110:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char newid[15];
data/libsbml-5.18.0+dfsg/src/sbml/SBMLConvert.cpp:1123:11:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
          sprintf(newid, "generatedId_%u", idCount);
data/libsbml-5.18.0+dfsg/src/sbml/SBMLConvert.cpp:1158:11:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
          sprintf(newid, "generatedId_%u", idCount);
data/libsbml-5.18.0+dfsg/src/sbml/SBMLConvert.cpp:1793:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char newid[15];
data/libsbml-5.18.0+dfsg/src/sbml/SBMLConvert.cpp:1799:3:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
  sprintf(newid, "parameterId_%u", idCount);
data/libsbml-5.18.0+dfsg/src/sbml/SBMLConvert.cpp:1820:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char newid[15];
data/libsbml-5.18.0+dfsg/src/sbml/SBMLConvert.cpp:1825:3:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
  sprintf(newid, "parameterId_%u", idCount);
data/libsbml-5.18.0+dfsg/src/sbml/SBMLConvert.cpp:1892:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char newid[15];
data/libsbml-5.18.0+dfsg/src/sbml/SBMLConvert.cpp:1916:11:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
          sprintf(newid, "speciesRefId_%u", idCount);
data/libsbml-5.18.0+dfsg/src/sbml/SBMLConvert.cpp:1943:11:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
          sprintf(newid, "speciesRefId_%u", idCount);
data/libsbml-5.18.0+dfsg/src/sbml/SBO.cpp:69:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char sbo[4]    = {83, 66, 79, 58};
data/libsbml-5.18.0+dfsg/src/sbml/UnitDefinition.cpp:1566:9:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
        char unit[80];
data/libsbml-5.18.0+dfsg/src/sbml/UnitDefinition.cpp:1587:9:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
        char unit[40];
data/libsbml-5.18.0+dfsg/src/sbml/annotation/Date.cpp:457:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char cdate[11];
data/libsbml-5.18.0+dfsg/src/sbml/annotation/Date.cpp:542:5:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    char year[5];
data/libsbml-5.18.0+dfsg/src/sbml/annotation/Date.cpp:544:5:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    char block[3];
data/libsbml-5.18.0+dfsg/src/sbml/annotation/test/TestRunner.c:109:3:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
  strcat(TestDataDirectory, "test-data/");
data/libsbml-5.18.0+dfsg/src/sbml/compress/bzfstream.cpp:78:12:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
bzfilebuf::open(const char *name,
data/libsbml-5.18.0+dfsg/src/sbml/compress/bzfstream.cpp:89:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char char_mode[6] = "\0\0\0\0\0";
data/libsbml-5.18.0+dfsg/src/sbml/compress/bzfstream.cpp:117:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char char_mode[6] = "\0\0\0\0\0";
data/libsbml-5.18.0+dfsg/src/sbml/compress/bzfstream.cpp:415:9:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  this->open(name, mode);
data/libsbml-5.18.0+dfsg/src/sbml/compress/bzfstream.cpp:429:13:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
bzifstream::open(const char* name,
data/libsbml-5.18.0+dfsg/src/sbml/compress/bzfstream.cpp:432:11:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  if (!sb.open(name, mode | std::ios_base::in))
data/libsbml-5.18.0+dfsg/src/sbml/compress/bzfstream.cpp:470:9:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  this->open(name, mode);
data/libsbml-5.18.0+dfsg/src/sbml/compress/bzfstream.cpp:484:13:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
bzofstream::open(const char* name,
data/libsbml-5.18.0+dfsg/src/sbml/compress/bzfstream.cpp:487:11:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  if (!sb.open(name, mode | std::ios_base::out))
data/libsbml-5.18.0+dfsg/src/sbml/compress/bzfstream.h:87:3:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  open(const char* name,
data/libsbml-5.18.0+dfsg/src/sbml/compress/bzfstream.h:306:3:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  open(const char* name,
data/libsbml-5.18.0+dfsg/src/sbml/compress/bzfstream.h:395:3:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  open(const char* name,
data/libsbml-5.18.0+dfsg/src/sbml/compress/crypt.h:99:14:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    unsigned char header[RAND_HEAD_LEN-2];  /* random header */
data/libsbml-5.18.0+dfsg/src/sbml/compress/ioapi.c:25:38:  [2] (misc) fopen:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
#  define FOPEN_FUNC(filename, mode) fopen(filename, mode)
data/libsbml-5.18.0+dfsg/src/sbml/compress/ioapi.c:140:16:  [2] (misc) fopen:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
        file = fopen(filename, mode_fopen);
data/libsbml-5.18.0+dfsg/src/sbml/compress/ioapi.h:37:19:  [2] (misc) fopen:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
#  define fopen64 fopen
data/libsbml-5.18.0+dfsg/src/sbml/compress/ioapi.h:42:21:  [2] (misc) fopen:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
#    define fopen64 fopen
data/libsbml-5.18.0+dfsg/src/sbml/compress/ioapi.h:47:21:  [2] (misc) fopen:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
#    define fopen64 fopen
data/libsbml-5.18.0+dfsg/src/sbml/compress/ioapi_mem.c:83:5:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
    memcpy(buf, mem->base + mem->cur_offset, size);
data/libsbml-5.18.0+dfsg/src/sbml/compress/ioapi_mem.c:110:13:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
            memcpy(newbase, mem->base, mem->size);
data/libsbml-5.18.0+dfsg/src/sbml/compress/ioapi_mem.c:118:5:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
    memcpy(mem->base + mem->cur_offset, buf, size);
data/libsbml-5.18.0+dfsg/src/sbml/compress/iowin32.c:113:9:  [2] (buffer) MultiByteToWideChar:
  Requires maximum length in CHARACTERS, not bytes (CWE-120).
        MultiByteToWideChar(CP_ACP, 0, (const char*)filename, -1, filenameW, FILENAME_MAX + 0x200);
data/libsbml-5.18.0+dfsg/src/sbml/compress/iowin32.c:143:9:  [2] (buffer) MultiByteToWideChar:
  Requires maximum length in CHARACTERS, not bytes (CWE-120).
        MultiByteToWideChar(CP_ACP, 0, (const char*)filename, -1, filenameW, FILENAME_MAX + 0x200);
data/libsbml-5.18.0+dfsg/src/sbml/compress/iowin32.c:204:9:  [2] (buffer) MultiByteToWideChar:
  Requires maximum length in CHARACTERS, not bytes (CWE-120).
        MultiByteToWideChar(CP_ACP, 0, (const char*)filename, -1, filenameW, FILENAME_MAX + 0x200);
data/libsbml-5.18.0+dfsg/src/sbml/compress/unzip.c:1089:5:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    char source[12];
data/libsbml-5.18.0+dfsg/src/sbml/compress/unzip.c:1236:22:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
            unsigned char passverify[AES_PWVERIFYSIZE];
data/libsbml-5.18.0+dfsg/src/sbml/compress/unzip.c:1237:22:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
            unsigned char saltvalue[AES_MAXSALTLENGTH];
data/libsbml-5.18.0+dfsg/src/sbml/compress/unzip.c:1351:17:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
                memcpy(pfile_in_zip_read_info->read_buffer, pfile_in_zip_read_info->stream.next_in, bytes_not_read);
data/libsbml-5.18.0+dfsg/src/sbml/compress/unzip.c:1591:18:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
        unsigned char authcode[AES_AUTHCODESIZE];
data/libsbml-5.18.0+dfsg/src/sbml/compress/unzip.c:1592:18:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
        unsigned char rauthcode[AES_AUTHCODESIZE];
data/libsbml-5.18.0+dfsg/src/sbml/compress/unzip.c:1646:9:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
        memcpy(pfile_info, &s->cur_file_info, sizeof(unz_file_info64));
data/libsbml-5.18.0+dfsg/src/sbml/compress/unzip.c:1676:9:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
        memcpy(pfile_info, &s->cur_file_info, sizeof(unz_file_info64));
data/libsbml-5.18.0+dfsg/src/sbml/compress/unzip.c:1693:5:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    char current_filename[UNZ_MAXFILENAMEINZIP+1];
data/libsbml-5.18.0+dfsg/src/sbml/compress/zfstream.cpp:51:12:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
gzfilebuf::open(const char *name,
data/libsbml-5.18.0+dfsg/src/sbml/compress/zfstream.cpp:62:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char char_mode[7] = "\0\0\0\0\0\0";
data/libsbml-5.18.0+dfsg/src/sbml/compress/zfstream.cpp:90:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char char_mode[7] = "\0\0\0\0\0\0";
data/libsbml-5.18.0+dfsg/src/sbml/compress/zfstream.cpp:385:9:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  this->open(name, mode);
data/libsbml-5.18.0+dfsg/src/sbml/compress/zfstream.cpp:399:13:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
gzifstream::open(const char* name,
data/libsbml-5.18.0+dfsg/src/sbml/compress/zfstream.cpp:402:11:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  if (!sb.open(name, mode | std::ios_base::in))
data/libsbml-5.18.0+dfsg/src/sbml/compress/zfstream.cpp:440:9:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  this->open(name, mode);
data/libsbml-5.18.0+dfsg/src/sbml/compress/zfstream.cpp:454:13:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
gzofstream::open(const char* name,
data/libsbml-5.18.0+dfsg/src/sbml/compress/zfstream.cpp:457:11:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  if (!sb.open(name, mode | std::ios_base::out))
data/libsbml-5.18.0+dfsg/src/sbml/compress/zfstream.h:66:3:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  open(const char* name,
data/libsbml-5.18.0+dfsg/src/sbml/compress/zfstream.h:285:3:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  open(const char* name,
data/libsbml-5.18.0+dfsg/src/sbml/compress/zfstream.h:374:3:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  open(const char* name,
data/libsbml-5.18.0+dfsg/src/sbml/compress/zip.c:103:14:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    unsigned char data[SIZEDATA_INDATABLOCK];
data/libsbml-5.18.0+dfsg/src/sbml/compress/zip.c:309:14:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    unsigned char buf[8];
data/libsbml-5.18.0+dfsg/src/sbml/compress/zip.c:1259:22:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
            unsigned char passverify[AES_PWVERIFYSIZE];
data/libsbml-5.18.0+dfsg/src/sbml/compress/zip.c:1260:22:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
            unsigned char saltvalue[AES_MAXSALTLENGTH];
data/libsbml-5.18.0+dfsg/src/sbml/compress/zip.c:1284:22:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
            unsigned char bufHead[RAND_HEAD_LEN];
data/libsbml-5.18.0+dfsg/src/sbml/compress/zip.c:1632:18:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
        unsigned char authcode[AES_AUTHCODESIZE];
data/libsbml-5.18.0+dfsg/src/sbml/compress/zipfstream.cpp:119:13:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
zipfilebuf::open(const char *name, const char* nameinzip,
data/libsbml-5.18.0+dfsg/src/sbml/compress/zipfstream.cpp:130:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char char_mode[6] = "\0\0\0\0\0";
data/libsbml-5.18.0+dfsg/src/sbml/compress/zipfstream.cpp:453:9:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  this->open(name, mode);
data/libsbml-5.18.0+dfsg/src/sbml/compress/zipfstream.cpp:458:14:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
zipifstream::open(const char* name,
data/libsbml-5.18.0+dfsg/src/sbml/compress/zipfstream.cpp:461:11:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  if (!sb.open(name, NULL, mode | std::ios_base::in))
data/libsbml-5.18.0+dfsg/src/sbml/compress/zipfstream.cpp:488:9:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  this->open(name, nameinzip, mode);
data/libsbml-5.18.0+dfsg/src/sbml/compress/zipfstream.cpp:493:14:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
zipofstream::open(const char* name, const char* nameinzip,
data/libsbml-5.18.0+dfsg/src/sbml/compress/zipfstream.cpp:496:11:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  if (!sb.open(name, nameinzip, mode | std::ios_base::out))
data/libsbml-5.18.0+dfsg/src/sbml/compress/zipfstream.cpp:650:5:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    char name[MAXFILENAME+1];
data/libsbml-5.18.0+dfsg/src/sbml/compress/zipfstream.h:114:3:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  open(const char* name, const char* filenameinzip,
data/libsbml-5.18.0+dfsg/src/sbml/compress/zipfstream.h:343:3:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  open(const char* name,
data/libsbml-5.18.0+dfsg/src/sbml/compress/zipfstream.h:422:3:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  open(const char* name, const char* filenameinzip,
data/libsbml-5.18.0+dfsg/src/sbml/conversion/SBMLInferUnitsConverter.cpp:177:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char number[4];
data/libsbml-5.18.0+dfsg/src/sbml/conversion/SBMLInferUnitsConverter.cpp:219:11:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
          sprintf(number, "%u", newIdCount);
data/libsbml-5.18.0+dfsg/src/sbml/conversion/SBMLInferUnitsConverter.cpp:226:13:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
            sprintf(number, "%u", newIdCount);
data/libsbml-5.18.0+dfsg/src/sbml/conversion/SBMLUnitsConverter.cpp:885:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char number[4];
data/libsbml-5.18.0+dfsg/src/sbml/conversion/SBMLUnitsConverter.cpp:898:5:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
    sprintf(number, "%u", newIdCount);
data/libsbml-5.18.0+dfsg/src/sbml/conversion/SBMLUnitsConverter.cpp:905:7:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
      sprintf(number, "%u", newIdCount);
data/libsbml-5.18.0+dfsg/src/sbml/conversion/test/TestRunner.c:105:3:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
  strcat(TestDataDirectory, "test-data/");
data/libsbml-5.18.0+dfsg/src/sbml/extension/test/TestRunner.c:102:3:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
  strcat(TestDataDirectory, "test-data/");
data/libsbml-5.18.0+dfsg/src/sbml/math/L3Parser.cpp:1210:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char const *yyarg[YYERROR_VERBOSE_ARGS_MAXIMUM];
data/libsbml-5.18.0+dfsg/src/sbml/math/L3Parser.cpp:1397:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char yymsgbuf[128];
data/libsbml-5.18.0+dfsg/src/sbml/math/test/TestRunner.c:112:3:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
  strcat(TestDataDirectory, "test-data/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/arrays/extension/test/TestRunner.cpp:68:3:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
  strcat(TestDataDirectory, "test-data/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/arrays/util/test/TestRunner.cpp:159:3:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
  strcat(TestDataDirectory, "test-data/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/extension/test/TestRunner.c:91:3:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
  strcat(TestDataDirectory, "test-data/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestRunner.c:99:3:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
  strcat(TestDataDirectory, "test-data/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/util/test/TestRunner.c:166:3:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
  strcat(TestDataDirectory, "test-data/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/validator/test/TestFile.cpp:93:10:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  return atol( mFilename.substr(0, 7).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/validator/test/TestFile.cpp:100:10:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  return atol( mFilename.substr(16, 2).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/validator/test/TestFile.cpp:107:18:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  unsigned num = atol( mFilename.substr(13, 2).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/validator/test/TestFile.cpp:118:12:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
    return atol( mFilename.substr(19, 7).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/distrib/extension/test/TestRunner.cpp:93:3:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
  strcat(TestDataDirectory, "test-data/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/distrib/sbml/test/TestRunner.cpp:90:3:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
  strcat(TestDataDirectory, "test-data/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/distrib/util/test/TestRunner.cpp:159:3:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
  strcat(TestDataDirectory, "test-data/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/distrib/validator/test/TestFile.cpp:93:10:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  return atol( mFilename.substr(0, 7).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/distrib/validator/test/TestFile.cpp:100:10:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  return atol( mFilename.substr(16, 2).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/distrib/validator/test/TestFile.cpp:107:18:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  unsigned num = atol( mFilename.substr(13, 2).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/distrib/validator/test/TestFile.cpp:118:12:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
    return atol( mFilename.substr(19, 7).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/dyn/extension/test/TestRunner.c:63:3:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
  strcat(TestDataDirectory, "test-data/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp:193:24:  [2] (integer) atoi:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
      chemicalNumber = atoi(chemicalNum.c_str());
data/libsbml-5.18.0+dfsg/src/sbml/packages/fbc/extension/test/TestRunner.c:64:3:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
  strcat(TestDataDirectory, "test-data/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/fbc/validator/test/TestFile.cpp:93:10:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  return atol( mFilename.substr(0, 7).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/fbc/validator/test/TestFile.cpp:100:10:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  return atol( mFilename.substr(16, 2).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/fbc/validator/test/TestFile.cpp:107:18:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  unsigned num = atol( mFilename.substr(13, 2).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/fbc/validator/test/TestFile.cpp:118:12:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
    return atol( mFilename.substr(19, 7).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/groups/extension/test/TestRunner.c:76:3:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
  strcat(TestDataDirectory, "test-data/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/groups/validator/test/TestFile.cpp:93:10:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  return atol( mFilename.substr(0, 7).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/groups/validator/test/TestFile.cpp:100:10:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  return atol( mFilename.substr(16, 2).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/groups/validator/test/TestFile.cpp:107:18:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  unsigned num = atol( mFilename.substr(13, 2).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/groups/validator/test/TestFile.cpp:118:12:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
    return atol( mFilename.substr(19, 7).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/l3v2extendedmath/extension/test/TestRunner.c:82:3:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
  strcat(TestDataDirectory, "test-data/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/l3v2extendedmath/validator/test/TestFile.cpp:95:12:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
    return atol(mFilename.substr(0, 5).c_str());
data/libsbml-5.18.0+dfsg/src/sbml/packages/l3v2extendedmath/validator/test/TestFile.cpp:99:12:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
    return atol(mFilename.substr(0, 7).c_str());
data/libsbml-5.18.0+dfsg/src/sbml/packages/l3v2extendedmath/validator/test/TestFile.cpp:109:12:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
    return atol(mFilename.substr(14, 2).c_str());
data/libsbml-5.18.0+dfsg/src/sbml/packages/l3v2extendedmath/validator/test/TestFile.cpp:113:12:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
    return atol(mFilename.substr(16, 2).c_str());
data/libsbml-5.18.0+dfsg/src/sbml/packages/l3v2extendedmath/validator/test/TestFile.cpp:124:11:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
    num = atol(mFilename.substr(11, 2).c_str());
data/libsbml-5.18.0+dfsg/src/sbml/packages/l3v2extendedmath/validator/test/TestFile.cpp:128:11:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
    num = atol(mFilename.substr(13, 2).c_str());
data/libsbml-5.18.0+dfsg/src/sbml/packages/l3v2extendedmath/validator/test/TestFile.cpp:140:12:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
    return atol( mFilename.substr(19, 7).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/layout/sbml/test/TestRunner.c:112:3:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
  strcat(TestDataDirectory, "/test-data/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/layout/validator/test/TestFile.cpp:100:10:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  return atol( mFilename.substr(0, 7).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/layout/validator/test/TestFile.cpp:107:10:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  return atol( mFilename.substr(16, 2).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/layout/validator/test/TestFile.cpp:114:18:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  unsigned num = atol( mFilename.substr(13, 2).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/layout/validator/test/TestFile.cpp:125:12:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
    return atol( mFilename.substr(19, 7).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/multi/extension/test/TestRunner.c:64:3:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
  strcat(TestDataDirectory, "test-data/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/multi/sbml/test/TestRunner.c:91:3:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
  strcat(TestDataDirectory, "test-data/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/multi/validator/test/TestFile.cpp:93:10:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  return atol( mFilename.substr(0, 7).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/multi/validator/test/TestFile.cpp:100:10:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  return atol( mFilename.substr(16, 2).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/multi/validator/test/TestFile.cpp:107:18:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  unsigned num = atol( mFilename.substr(13, 2).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/multi/validator/test/TestFile.cpp:118:12:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
    return atol( mFilename.substr(19, 7).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/qual/extension/test/TestRunner.c:85:3:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
  strcat(TestDataDirectory, "test-data/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/qual/sbml/test/TestRunner.c:93:3:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
  strcat(TestDataDirectory, "test-data/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/qual/validator/test/TestFile.cpp:100:10:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  return atol( mFilename.substr(0, 7).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/qual/validator/test/TestFile.cpp:107:10:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  return atol( mFilename.substr(16, 2).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/qual/validator/test/TestFile.cpp:114:18:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  unsigned num = atol( mFilename.substr(13, 2).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/qual/validator/test/TestFile.cpp:125:12:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
    return atol( mFilename.substr(19, 7).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/render/sbml/Transformation.cpp:197:3:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
  memcpy(outArray, mMatrix, sizeof(double)*mTransformLength);
data/libsbml-5.18.0+dfsg/src/sbml/packages/render/sbml/test/TestRunner.c:133:3:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
  strcat(TestDataDirectory, "/test-data/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/render/validator/test/TestFile.cpp:100:10:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  return atol( mFilename.substr(0, 7).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/render/validator/test/TestFile.cpp:107:10:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  return atol( mFilename.substr(16, 2).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/render/validator/test/TestFile.cpp:114:18:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  unsigned num = atol( mFilename.substr(13, 2).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/render/validator/test/TestFile.cpp:125:12:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
    return atol( mFilename.substr(19, 7).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/req/extension/test/TestRunner.c:64:3:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
  strcat(TestDataDirectory, "test-data/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/spatial/extension/test/TestRunner.c:62:3:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
  strcat(TestDataDirectory, "test-data/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/spatial/sbml/ParametricObject.cpp:220:3:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
  memcpy(outArray, mPointIndex, sizeof(int)*mPointIndexLength);
data/libsbml-5.18.0+dfsg/src/sbml/packages/spatial/sbml/ParametricObject.cpp:459:3:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
  memcpy(mPointIndex, inArray, sizeof(int)*arrayLength);
data/libsbml-5.18.0+dfsg/src/sbml/packages/spatial/sbml/SampledField.cpp:319:3:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
  memcpy(outArray, mSamples, sizeof(int)*mSamplesLength);
data/libsbml-5.18.0+dfsg/src/sbml/packages/spatial/sbml/SampledField.cpp:632:3:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
  memcpy(mSamples, inArray, sizeof(int)*arrayLength);
data/libsbml-5.18.0+dfsg/src/sbml/packages/spatial/sbml/SampledField.cpp:1898:3:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
  memcpy(outputSamples , mUncompressedSamples, sizeof(int)*mUncompressedLength);   
data/libsbml-5.18.0+dfsg/src/sbml/packages/spatial/sbml/SampledField.cpp:1985:5:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
    memcpy(target, source, sizeof(int)*sourceLength);
data/libsbml-5.18.0+dfsg/src/sbml/packages/spatial/sbml/SpatialPoints.cpp:201:3:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
  memcpy(outArray, mArrayData, sizeof(double)*mArrayDataLength);
data/libsbml-5.18.0+dfsg/src/sbml/packages/spatial/sbml/SpatialPoints.cpp:376:3:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
  memcpy(mArrayData, inArray, sizeof(double)*arrayLength);
data/libsbml-5.18.0+dfsg/src/sbml/packages/spatial/sbml/TransformationComponent.cpp:160:3:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
  memcpy(outArray, mComponents, sizeof(double)*mComponentsLength);
data/libsbml-5.18.0+dfsg/src/sbml/packages/spatial/sbml/TransformationComponent.cpp:215:3:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
  memcpy(mComponents, inArray, sizeof(double)*arrayLength);
data/libsbml-5.18.0+dfsg/src/sbml/packages/spatial/sbml/test/TestRunner.c:90:3:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
  strcat(TestDataDirectory, "test-data/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/spatial/validator/test/TestFile.cpp:93:10:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  return atol( mFilename.substr(0, 7).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/spatial/validator/test/TestFile.cpp:100:10:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  return atol( mFilename.substr(16, 2).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/spatial/validator/test/TestFile.cpp:107:18:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  unsigned num = atol( mFilename.substr(13, 2).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/packages/spatial/validator/test/TestFile.cpp:118:12:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
    return atol( mFilename.substr(19, 7).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/test/TestRunner.c:211:3:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
  strcat(TestDataDirectory, "test-data/");
data/libsbml-5.18.0+dfsg/src/sbml/units/test/TestRunner.c:104:3:  [2] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant string.
  strcat(TestDataDirectory, "test-data/");
data/libsbml-5.18.0+dfsg/src/sbml/util/test/TestUtil.c:57:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char s[32];
data/libsbml-5.18.0+dfsg/src/sbml/util/test/TestUtil.c:222:3:  [2] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused). Risk is low because the source is a constant string.
  strcpy(s, "q ");
data/libsbml-5.18.0+dfsg/src/sbml/util/test/TestUtil.c:225:3:  [2] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused). Risk is low because the source is a constant string.
  strcpy(s, " r");
data/libsbml-5.18.0+dfsg/src/sbml/util/test/TestUtil.c:228:3:  [2] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused). Risk is low because the source is a constant string.
  strcpy(s, " s ");
data/libsbml-5.18.0+dfsg/src/sbml/util/test/TestUtil.c:231:3:  [2] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused). Risk is low because the source is a constant string.
  strcpy(s, "foo");
data/libsbml-5.18.0+dfsg/src/sbml/util/test/TestUtil.c:234:3:  [2] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused). Risk is low because the source is a constant string.
  strcpy(s, "foo ");
data/libsbml-5.18.0+dfsg/src/sbml/util/test/TestUtil.c:237:3:  [2] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused). Risk is low because the source is a constant string.
  strcpy(s, " bar");
data/libsbml-5.18.0+dfsg/src/sbml/util/test/TestUtil.c:240:3:  [2] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused). Risk is low because the source is a constant string.
  strcpy(s, " bar ");
data/libsbml-5.18.0+dfsg/src/sbml/util/test/TestUtil.c:243:3:  [2] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused). Risk is low because the source is a constant string.
  strcpy(s, " foo bar ");
data/libsbml-5.18.0+dfsg/src/sbml/util/util.cpp:165:13:  [2] (misc) fopen:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
  fp      = fopen(filename, mode);
data/libsbml-5.18.0+dfsg/src/sbml/validator/SBMLExternalValidator.cpp:210:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
		char *argv[4];
data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/OverDeterminedCheck.cpp:180:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char rule[10];
data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/OverDeterminedCheck.cpp:181:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
  char react[10];
data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/OverDeterminedCheck.cpp:221:5:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
    sprintf(rule, "rule_%u", n);
data/libsbml-5.18.0+dfsg/src/sbml/validator/constraints/OverDeterminedCheck.cpp:230:7:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
      sprintf(react, "KL_%u", n);
data/libsbml-5.18.0+dfsg/src/sbml/validator/test/TestFile.cpp:101:10:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  return atol( mFilename.substr(0, 5).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/validator/test/TestFile.cpp:108:10:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  return atol( mFilename.substr(14, 2).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/validator/test/TestFile.cpp:115:18:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
  unsigned num = atol( mFilename.substr(11, 2).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/validator/test/TestFile.cpp:126:12:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
    return atol( mFilename.substr(17, 5).c_str() );
data/libsbml-5.18.0+dfsg/src/sbml/validator/test/tps/dirent.c:88:5:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    char            directory[_MAX_DIR + 1];    /* . */
data/libsbml-5.18.0+dfsg/src/sbml/validator/test/tps/dirent.c:100:5:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    char    search_spec[_MAX_PATH +1];
data/libsbml-5.18.0+dfsg/src/sbml/validator/test/tps/dirent.h:93:5:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    char d_name[NAME_MAX + 1];   /*!< file name (null-terminated) */
data/libsbml-5.18.0+dfsg/src/sbml/xml/XMLMemoryBuffer.cpp:88:3:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
  memcpy(destination, mBuffer + mOffset, bytes);
data/libsbml-5.18.0+dfsg/src/sbml/xml/XMLOutputStream.cpp:987:5:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    char formattedDateAndTime[17];
data/libsbml-5.18.0+dfsg/src/sbml/xml/XMLOutputStream.cpp:991:5:  [2] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf. Risk is low because the source has a constant maximum length.
    sprintf(formattedDateAndTime, "%d-%02d-%02d %02d:%02d",
data/libsbml-5.18.0+dfsg/examples/c++/translateL3Math.cpp:93:17:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
      len     = strlen(trimmed);
data/libsbml-5.18.0+dfsg/examples/c++/translateMath.cpp:90:17:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
      len     = strlen(trimmed);
data/libsbml-5.18.0+dfsg/examples/c/evaluateMath.c:75:10:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
    if ( strlen(line = trim_whitespace(get_line( stdin ))) == 0 ) break;
data/libsbml-5.18.0+dfsg/examples/c/translateL3Math.c:89:28:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
      len  = (unsigned int)strlen(line);
data/libsbml-5.18.0+dfsg/examples/c/translateL3Math.c:93:48:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
        buffer = (char *) realloc( buffer, 1 + strlen(buffer) + len );
data/libsbml-5.18.0+dfsg/examples/c/translateL3Math.c:128:18:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
		  size_t len = strlen(line);
data/libsbml-5.18.0+dfsg/examples/c/translateL3Math.c:130:5:  [1] (buffer) strncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
		  strncpy(filename, line+5, len-5);
data/libsbml-5.18.0+dfsg/examples/c/translateL3Math.c:146:11:  [1] (buffer) strncat:
  Easily used incorrectly (e.g., incorrectly computing the correct maximum
  size to add) [MS-banned] (CWE-120). Consider strcat_s, strlcat, snprintf,
  or automatically resizing strings.
          strncat(buffer, line, len);
data/libsbml-5.18.0+dfsg/examples/c/translateL3Math.c:147:11:  [1] (buffer) strncat:
  Easily used incorrectly (e.g., incorrectly computing the correct maximum
  size to add) [MS-banned] (CWE-120). Consider strcat_s, strlcat, snprintf,
  or automatically resizing strings. Risk is low because the source is a
  constant character.
          strncat(buffer, "\n", 1);
data/libsbml-5.18.0+dfsg/examples/c/translateMath.c:81:28:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
      len  = (unsigned int)strlen(line);
data/libsbml-5.18.0+dfsg/examples/c/translateMath.c:85:48:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
        buffer = (char *) realloc( buffer, 1 + strlen(buffer) + len );
data/libsbml-5.18.0+dfsg/examples/c/translateMath.c:87:9:  [1] (buffer) strncat:
  Easily used incorrectly (e.g., incorrectly computing the correct maximum
  size to add) [MS-banned] (CWE-120). Consider strcat_s, strlcat, snprintf,
  or automatically resizing strings.
        strncat(buffer, line, len);
data/libsbml-5.18.0+dfsg/examples/c/translateMath.c:88:9:  [1] (buffer) strncat:
  Easily used incorrectly (e.g., incorrectly computing the correct maximum
  size to add) [MS-banned] (CWE-120). Consider strcat_s, strlcat, snprintf,
  or automatically resizing strings. Risk is low because the source is a
  constant character.
        strncat(buffer, "\n", 1);
data/libsbml-5.18.0+dfsg/examples/c/translateMath.c:148:38:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
    char *content = (char *) calloc( strlen(xml) + strlen(header) + 1, sizeof(char) );
data/libsbml-5.18.0+dfsg/examples/c/translateMath.c:148:52:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
    char *content = (char *) calloc( strlen(xml) + strlen(header) + 1, sizeof(char) );
data/libsbml-5.18.0+dfsg/examples/c/translateMath.c:150:5:  [1] (buffer) strncat:
  Easily used incorrectly (e.g., incorrectly computing the correct maximum
  size to add) [MS-banned] (CWE-120). Consider strcat_s, strlcat, snprintf,
  or automatically resizing strings.
    strncat(content, header, strlen(header));
data/libsbml-5.18.0+dfsg/examples/c/translateMath.c:150:30:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
    strncat(content, header, strlen(header));
data/libsbml-5.18.0+dfsg/examples/c/translateMath.c:151:5:  [1] (buffer) strncat:
  Easily used incorrectly (e.g., incorrectly computing the correct maximum
  size to add) [MS-banned] (CWE-120). Consider strcat_s, strlcat, snprintf,
  or automatically resizing strings.
    strncat(content, xml, strlen(xml));
data/libsbml-5.18.0+dfsg/examples/c/translateMath.c:151:27:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
    strncat(content, xml, strlen(xml));
data/libsbml-5.18.0+dfsg/examples/c/util.c:130:9:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  len = strlen(s);
data/libsbml-5.18.0+dfsg/examples/c/util.c:183:33:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
      line = (char *) calloc( 1+strlen(s), sizeof(char) );
data/libsbml-5.18.0+dfsg/examples/c/util.c:185:39:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
      line = (char *)realloc( line, 1+strlen( s )+strlen( line ) );
data/libsbml-5.18.0+dfsg/examples/c/util.c:185:51:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
      line = (char *)realloc( line, 1+strlen( s )+strlen( line ) );
data/libsbml-5.18.0+dfsg/src/bindings/java/libsbml_wrap.cpp:619:18:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
	size_t msglen = strlen(srcmsg) + 1;
data/libsbml-5.18.0+dfsg/src/bindings/java/libsbml_wrap.cpp:621:2:  [1] (buffer) strncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
	strncpy(target, srcmsg, msglen);
data/libsbml-5.18.0+dfsg/src/bindings/matlab/OutputSBML.cpp:2515:23:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  if (utf8 != NULL && strlen(utf8) == 0 && length > 0)
data/libsbml-5.18.0+dfsg/src/bindings/matlab/OutputSBML.cpp:2558:16:  [1] (buffer) wcslen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  size_t len = wcslen(fileName), i;
data/libsbml-5.18.0+dfsg/src/bindings/matlab/OutputSBML.cpp:2559:22:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  size_t targetLen = strlen(ext);
data/libsbml-5.18.0+dfsg/src/bindings/matlab/OutputSBML.cpp:3024:37:  [1] (buffer) wcslen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
      msgTxt = (char *) safe_calloc(wcslen(filename)+35, sizeof(char));
data/libsbml-5.18.0+dfsg/src/bindings/matlab/OutputSBML.cpp:3027:37:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
      msgTxt = (char *) safe_calloc(strlen(filename)+35, sizeof(char));
data/libsbml-5.18.0+dfsg/src/bindings/matlab/OutputSBML.cpp:3435:22:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
        size_t len = strlen(sbml);
data/libsbml-5.18.0+dfsg/src/bindings/matlab/TranslateSBML.cpp:2514:23:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  if (utf8 != NULL && strlen(utf8) == 0 && length > 0)
data/libsbml-5.18.0+dfsg/src/bindings/matlab/TranslateSBML.cpp:2557:16:  [1] (buffer) wcslen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  size_t len = wcslen(fileName), i;
data/libsbml-5.18.0+dfsg/src/bindings/matlab/TranslateSBML.cpp:2558:22:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  size_t targetLen = strlen(ext);
data/libsbml-5.18.0+dfsg/src/bindings/matlab/TranslateSBML.cpp:3023:37:  [1] (buffer) wcslen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
      msgTxt = (char *) safe_calloc(wcslen(filename)+35, sizeof(char));
data/libsbml-5.18.0+dfsg/src/bindings/matlab/TranslateSBML.cpp:3026:37:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
      msgTxt = (char *) safe_calloc(strlen(filename)+35, sizeof(char));
data/libsbml-5.18.0+dfsg/src/bindings/matlab/TranslateSBML.cpp:3260:18:  [1] (buffer) wcslen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
    size_t len = wcslen(filename);
data/libsbml-5.18.0+dfsg/src/bindings/perl/LibSBML_wrap.cxx:406:25:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  const char* te = tb + strlen(tb);
data/libsbml-5.18.0+dfsg/src/bindings/perl/LibSBML_wrap.cxx:690:7:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  if (strlen(name) + 1 > (bsz - (r - buff))) return 0;
data/libsbml-5.18.0+dfsg/src/bindings/perl/LibSBML_wrap.cxx:711:26:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  size_t lname = (name ? strlen(name) : 0);
data/libsbml-5.18.0+dfsg/src/bindings/perl/LibSBML_wrap.cxx:716:5:  [1] (buffer) strncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
    strncpy(r,name,lname+1);
data/libsbml-5.18.0+dfsg/src/bindings/perl/LibSBML_wrap.cxx:1275:19:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  if ((2*sz + 1 + strlen(SWIG_Perl_TypeProxyName(type))) > 1000) return;
data/libsbml-5.18.0+dfsg/src/bindings/perl/LibSBML_wrap.cxx:1367:27:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  sv_magic(sv,sv,'U',name,strlen(name));
data/libsbml-5.18.0+dfsg/src/bindings/perl/LibSBML_wrap.cxx:1464:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
#ifdef read
data/libsbml-5.18.0+dfsg/src/bindings/perl/LibSBML_wrap.cxx:1465:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  #undef read
data/libsbml-5.18.0+dfsg/src/bindings/perl/LibSBML_wrap.cxx:2384:30:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
	if (psize) *psize = vptr ? (strlen(vptr) + 1) : 0;
data/libsbml-5.18.0+dfsg/src/bindings/perl/LibSBML_wrap.cxx:2467:48:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  return SWIG_FromCharPtrAndSize(cptr, (cptr ? strlen(cptr) : 0));
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:416:25:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  const char* te = tb + strlen(tb);
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:700:7:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  if (strlen(name) + 1 > (bsz - (r - buff))) return 0;
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:721:26:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  size_t lname = (name ? strlen(name) : 0);
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:726:5:  [1] (buffer) strncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
    strncpy(r,name,lname+1);
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:890:91:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
#  define PyString_AsStringAndSize(obj, s, len) {*s = PyString_AsString(obj); *len = *s ? strlen(*s) : 0;}
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:3977:18:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
    virtual bool equal (const SwigPyIterator &/*x*/) const
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:4016:14:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
      return equal(x);
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:4432:30:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
	if (psize) *psize = vptr ? (strlen((char *)vptr) + 1) : 0;
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:4852:48:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  return SWIG_FromCharPtrAndSize(cptr, (cptr ? strlen(cptr) : 0));
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:5240:10:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
    bool equal (const SwigPyIterator &iter) const
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:8127:58:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
    result = (bool)((swig::SwigPyIterator const *)arg1)->equal((swig::SwigPyIterator const &)*arg2);
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:174394:21:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
      size_t size = strlen(name)+1;
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:174397:9:  [1] (buffer) strncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
        strncpy(gv->name,name,size);
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:174461:15:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
              strlen(const_table[j].name)) == 0) {
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:174472:27:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
            size_t lptr = strlen(ty->name)+2*sizeof(void*)+2;
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:174476:15:  [1] (buffer) strncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
              strncpy(buff, methods[i].ml_doc, ldoc);
data/libsbml-5.18.0+dfsg/src/bindings/python/libsbml_wrap.cpp:174478:15:  [1] (buffer) strncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120). Risk is low because the source is a
  constant string.
              strncpy(buff, "swig_ptr: ", 10);
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:529:25:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  const char* te = tb + strlen(tb);
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:813:7:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  if (strlen(name) + 1 > (bsz - (r - buff))) return 0;
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:834:26:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  size_t lname = (name ? strlen(name) : 0);
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:839:5:  [1] (buffer) strncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
    strncpy(r,name,lname+1);
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:895:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
#ifdef read
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:896:9:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
# undef read
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:1515:42:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  char *klass_name = (char *) malloc(4 + strlen(type->name) + 1);
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:1571:38:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
    klass_name = (char *) malloc(4 + strlen(type->name) + 1);
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:1719:19:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  if ((2*sz + 1 + strlen(type->name)) > 1000) return 0;
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:2845:18:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
    virtual bool equal (const ConstIterator &x) const
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:2918:14:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
      return equal(x);
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:3039:14:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
      return equal(x);
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:3596:30:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
	if (psize) *psize = vptr ? (strlen((char*)vptr) + 1) : 0;
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:3726:48:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  return SWIG_FromCharPtrAndSize(cptr, (cptr ? strlen(cptr) : 0));
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:3926:18:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
    virtual bool equal (const ConstIterator &iter) const
data/libsbml-5.18.0+dfsg/src/bindings/ruby/libsbml_wrap.cpp:4019:18:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
    virtual bool equal (const ConstIterator &iter) const
data/libsbml-5.18.0+dfsg/src/sbml/Constraint.cpp:846:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  return read;
data/libsbml-5.18.0+dfsg/src/sbml/Delay.cpp:747:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  return read;
data/libsbml-5.18.0+dfsg/src/sbml/EventAssignment.cpp:919:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  return read;
data/libsbml-5.18.0+dfsg/src/sbml/FunctionDefinition.cpp:942:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  return read;
data/libsbml-5.18.0+dfsg/src/sbml/InitialAssignment.cpp:900:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  return read;
data/libsbml-5.18.0+dfsg/src/sbml/KineticLaw.cpp:1834:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  return read;
data/libsbml-5.18.0+dfsg/src/sbml/Model.cpp:4834:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  return read;
data/libsbml-5.18.0+dfsg/src/sbml/Priority.cpp:607:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  return read;
data/libsbml-5.18.0+dfsg/src/sbml/Rule.cpp:1264:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  return read;
data/libsbml-5.18.0+dfsg/src/sbml/SBMLReader.cpp:295:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
    d->read(stream);
data/libsbml-5.18.0+dfsg/src/sbml/SBase.cpp:4439:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
SBase::read (XMLInputStream& stream)
data/libsbml-5.18.0+dfsg/src/sbml/SBase.cpp:4591:17:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
        object->read(stream);
data/libsbml-5.18.0+dfsg/src/sbml/SBase.cpp:4809:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  return read;
data/libsbml-5.18.0+dfsg/src/sbml/SBase.cpp:6770:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
SBase::read(XMLNode& node, XMLErrorSeverityOverride_t flag /*= LIBSBML_OVERRIDE_DISABLED*/)
data/libsbml-5.18.0+dfsg/src/sbml/SBase.cpp:6787:3:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  read(stream);
data/libsbml-5.18.0+dfsg/src/sbml/SBase.h:2349:9:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
   void read(XMLNode& node, XMLErrorSeverityOverride_t flag = LIBSBML_OVERRIDE_DISABLED);
data/libsbml-5.18.0+dfsg/src/sbml/SBase.h:2965:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  void read (XMLInputStream& stream);
data/libsbml-5.18.0+dfsg/src/sbml/SpeciesReference.cpp:1362:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  return read;
data/libsbml-5.18.0+dfsg/src/sbml/StoichiometryMath.cpp:367:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  return read;
data/libsbml-5.18.0+dfsg/src/sbml/Trigger.cpp:823:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  return read;
data/libsbml-5.18.0+dfsg/src/sbml/annotation/test/TestRunner.c:95:44:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  size_t  length  = (srcdir == NULL) ? 0 : strlen(srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/annotation/test/TestRunner.c:106:5:  [1] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant character.
    strcat(TestDataDirectory, "/");
data/libsbml-5.18.0+dfsg/src/sbml/compress/bzfstream.cpp:176:5:  [1] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused). Risk is low because the source is a constant character.
    strcpy(c_mode, "w");
data/libsbml-5.18.0+dfsg/src/sbml/compress/bzfstream.cpp:178:5:  [1] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused). Risk is low because the source is a constant character.
    strcpy(c_mode, "a");
data/libsbml-5.18.0+dfsg/src/sbml/compress/bzfstream.cpp:180:5:  [1] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused). Risk is low because the source is a constant character.
    strcpy(c_mode, "w");
data/libsbml-5.18.0+dfsg/src/sbml/compress/bzfstream.cpp:182:5:  [1] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused). Risk is low because the source is a constant character.
    strcpy(c_mode, "r");
data/libsbml-5.18.0+dfsg/src/sbml/compress/bzfstream.cpp:190:7:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  if (strlen(c_mode) == 0)
data/libsbml-5.18.0+dfsg/src/sbml/compress/ioapi.c:121:31:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
    ioposix->filenameLength = strlen(filename) + 1;
data/libsbml-5.18.0+dfsg/src/sbml/compress/ioapi.c:123:5:  [1] (buffer) strncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
    strncpy(ioposix->filename, filename, ioposix->filenameLength);
data/libsbml-5.18.0+dfsg/src/sbml/compress/ioapi.c:176:5:  [1] (buffer) strncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
    strncpy(diskFilename, ioposix->filename, ioposix->filenameLength);
data/libsbml-5.18.0+dfsg/src/sbml/compress/ioapi.c:201:5:  [1] (buffer) strncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
    strncpy(diskFilename, ioposix->filename, ioposix->filenameLength);
data/libsbml-5.18.0+dfsg/src/sbml/compress/iowin32.c:124:29:  [1] (buffer) _tcslen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
    iowin->filenameLength = _tcslen(filename) + 1;
data/libsbml-5.18.0+dfsg/src/sbml/compress/iowin32.c:126:5:  [1] (buffer) _tcsncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
    _tcsncpy(iowin->filename, filename, iowin->filenameLength);
data/libsbml-5.18.0+dfsg/src/sbml/compress/iowin32.c:153:29:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
    iowin->filenameLength = strlen(filename) + 1;
data/libsbml-5.18.0+dfsg/src/sbml/compress/iowin32.c:155:5:  [1] (buffer) strncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
    strncpy(iowin->filename, filename, iowin->filenameLength);
data/libsbml-5.18.0+dfsg/src/sbml/compress/iowin32.c:182:33:  [1] (buffer) wcslen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
        iowin->filenameLength = wcslen(filename) + 1;
data/libsbml-5.18.0+dfsg/src/sbml/compress/iowin32.c:184:9:  [1] (buffer) wcsncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
        wcsncpy(iowin->filename, filename, iowin->filenameLength);
data/libsbml-5.18.0+dfsg/src/sbml/compress/iowin32.c:215:29:  [1] (buffer) _tcslen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
    iowin->filenameLength = _tcslen(filename) + 1;
data/libsbml-5.18.0+dfsg/src/sbml/compress/iowin32.c:217:5:  [1] (buffer) _tcsncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
    _tcsncpy(iowin->filename, filename, iowin->filenameLength);
data/libsbml-5.18.0+dfsg/src/sbml/compress/iowin32.c:232:5:  [1] (buffer) _tcsncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
    _tcsncpy(diskFilename, iowin->filename, iowin->filenameLength);
data/libsbml-5.18.0+dfsg/src/sbml/compress/iowin32.c:257:5:  [1] (buffer) wcsncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
    wcsncpy(diskFilename, iowin->filename, iowin->filenameLength);
data/libsbml-5.18.0+dfsg/src/sbml/compress/iowin32.c:282:5:  [1] (buffer) strncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
    strncpy(diskFilename, iowin->filename, iowin->filenameLength);
data/libsbml-5.18.0+dfsg/src/sbml/compress/iowin32.c:307:5:  [1] (buffer) _tcsncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
    _tcsncpy(diskFilename, iowin->filename, iowin->filenameLength);
data/libsbml-5.18.0+dfsg/src/sbml/compress/unzip.c:1251:82:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
            fcrypt_init(s->cur_file_info_internal.aes_encryption_mode, password, strlen(password), saltvalue,
data/libsbml-5.18.0+dfsg/src/sbml/compress/unzip.c:1413:48:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
                return (read == 0) ? UNZ_EOF : read;
data/libsbml-5.18.0+dfsg/src/sbml/compress/unzip.c:1474:48:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
                return (read == 0) ? UNZ_EOF : read;
data/libsbml-5.18.0+dfsg/src/sbml/compress/unzip.c:1511:48:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
                return (read == 0) ? UNZ_EOF : read;
data/libsbml-5.18.0+dfsg/src/sbml/compress/unzip.c:1518:16:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
        return read;
data/libsbml-5.18.0+dfsg/src/sbml/compress/unzip.c:1697:9:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
    if (strlen(filename) >= UNZ_MAXFILENAMEINZIP)
data/libsbml-5.18.0+dfsg/src/sbml/compress/zfstream.cpp:146:5:  [1] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused). Risk is low because the source is a constant character.
    strcpy(c_mode, "w");
data/libsbml-5.18.0+dfsg/src/sbml/compress/zfstream.cpp:148:5:  [1] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused). Risk is low because the source is a constant character.
    strcpy(c_mode, "a");
data/libsbml-5.18.0+dfsg/src/sbml/compress/zfstream.cpp:150:5:  [1] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused). Risk is low because the source is a constant character.
    strcpy(c_mode, "w");
data/libsbml-5.18.0+dfsg/src/sbml/compress/zfstream.cpp:152:5:  [1] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused). Risk is low because the source is a constant character.
    strcpy(c_mode, "r");
data/libsbml-5.18.0+dfsg/src/sbml/compress/zfstream.cpp:160:7:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  if (strlen(c_mode) == 0)
data/libsbml-5.18.0+dfsg/src/sbml/compress/zip.c:998:30:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
        size_comment = (uInt)strlen(comment);
data/libsbml-5.18.0+dfsg/src/sbml/compress/zip.c:1000:27:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
    size_filename = (uInt)strlen(filename);
data/libsbml-5.18.0+dfsg/src/sbml/compress/zip.c:1272:55:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
            fcrypt_init(AES_ENCRYPTIONMODE, password, strlen(password), saltvalue, passverify, &zi->ci.aes_ctx);
data/libsbml-5.18.0+dfsg/src/sbml/compress/zip.c:1990:37:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
        size_global_comment = (uInt)strlen(global_comment);
data/libsbml-5.18.0+dfsg/src/sbml/compress/zipfstream.cpp:211:5:  [1] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused). Risk is low because the source is a constant character.
    strcpy(c_mode, "w");
data/libsbml-5.18.0+dfsg/src/sbml/compress/zipfstream.cpp:213:5:  [1] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused). Risk is low because the source is a constant character.
    strcpy(c_mode, "a");
data/libsbml-5.18.0+dfsg/src/sbml/compress/zipfstream.cpp:215:5:  [1] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused). Risk is low because the source is a constant character.
    strcpy(c_mode, "w");
data/libsbml-5.18.0+dfsg/src/sbml/compress/zipfstream.cpp:217:5:  [1] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused). Risk is low because the source is a constant character.
    strcpy(c_mode, "r");
data/libsbml-5.18.0+dfsg/src/sbml/compress/zipfstream.cpp:225:7:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  if (strlen(c_mode) == 0)
data/libsbml-5.18.0+dfsg/src/sbml/compress/zipfstream.cpp:228:5:  [1] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant character.
    strcat(c_mode, "b");
data/libsbml-5.18.0+dfsg/src/sbml/compress/zipfstream.cpp:651:20:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
    int len = (int)strlen(f);
data/libsbml-5.18.0+dfsg/src/sbml/compress/zipfstream.cpp:655:5:  [1] (buffer) strncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
    strncpy(name, f,MAXFILENAME-1);
data/libsbml-5.18.0+dfsg/src/sbml/conversion/test/TestRunner.c:91:44:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  size_t  length  = (srcdir == NULL) ? 0 : strlen(srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/conversion/test/TestRunner.c:102:5:  [1] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant character.
    strcat(TestDataDirectory, "/");
data/libsbml-5.18.0+dfsg/src/sbml/extension/test/TestRunner.c:88:44:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  size_t  length  = (srcdir == NULL) ? 0 : strlen(srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/extension/test/TestRunner.c:99:5:  [1] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant character.
    strcat(TestDataDirectory, "/");
data/libsbml-5.18.0+dfsg/src/sbml/math/FormulaTokenizer.cpp:125:3:  [1] (buffer) strncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
  strncpy(t->value.name, ft->formula + start, len);
data/libsbml-5.18.0+dfsg/src/sbml/math/L3Parser.cpp:1110:21:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
#   define yystrlen strlen
data/libsbml-5.18.0+dfsg/src/sbml/math/test/TestRunner.c:98:44:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  size_t  length  = (srcdir == NULL) ? 0 : strlen(srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/math/test/TestRunner.c:109:5:  [1] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant character.
    strcat(TestDataDirectory, "/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/arrays/extension/test/TestRunner.cpp:54:46:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  int  length  = (srcdir == NULL) ? 0 : (int)strlen(srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/arrays/extension/test/TestRunner.cpp:65:5:  [1] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant character.
    strcat(TestDataDirectory, "/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/arrays/sbml/Index.cpp:905:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  return read;
data/libsbml-5.18.0+dfsg/src/sbml/packages/arrays/util/test/TestRunner.cpp:145:46:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  int  length  = (srcdir == NULL) ? 0 : (int)strlen(srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/arrays/util/test/TestRunner.cpp:156:5:  [1] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant character.
    strcat(TestDataDirectory, "/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/extension/test/TestRunner.c:77:46:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  int  length  = (srcdir == NULL) ? 0 : (int)strlen(srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/extension/test/TestRunner.c:88:5:  [1] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant character.
    strcat(TestDataDirectory, "/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:169:24:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  fail_unless( !strcmp(getchar, modelRef) );
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:176:8:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  free(getchar);
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:200:24:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  fail_unless( !strcmp(getchar, source) );
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:207:8:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  free(getchar);
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:98:24:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  fail_unless( !strcmp(getchar, id) );
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:128:24:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  fail_unless( !strcmp(getchar, name) );
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestPort.c:103:24:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  fail_unless( !strcmp(getchar, id) );
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestPort.c:110:8:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  free(getchar);
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestPort.c:134:24:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  fail_unless( !strcmp(getchar, name) );
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestPort.c:141:8:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  free(getchar);
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestReplacedBy.c:101:24:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  fail_unless( !strcmp(getchar, submodelRef) );
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestReplacedBy.c:108:8:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  free(getchar);
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:105:24:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  fail_unless( !strcmp(getchar, submodelRef) );
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:112:8:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  free(getchar);
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:136:24:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  fail_unless( !strcmp(getchar, deletion) );
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:143:8:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  free(getchar);
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:167:24:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  fail_unless( !strcmp(getchar, conversionFactor) );
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:174:8:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  free(getchar);
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestRunner.c:85:46:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  int  length  = (srcdir == NULL) ? 0 : (int)strlen(srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestRunner.c:96:5:  [1] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant character.
    strcat(TestDataDirectory, "/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:109:24:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  fail_unless( !strcmp(getchar, idRef) );
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:116:8:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  free(getchar);
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:140:24:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  fail_unless( !strcmp(getchar, unitRef) );
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:147:8:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  free(getchar);
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:171:24:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  fail_unless( !strcmp(getchar, metaIdRef) );
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:178:8:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  free(getchar);
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:202:24:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  fail_unless( !strcmp(getchar, portRef) );
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:209:8:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  free(getchar);
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestSubmodel.c:115:24:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  fail_unless( !strcmp(getchar, id) );
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestSubmodel.c:122:8:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  free(getchar);
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestSubmodel.c:146:24:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  fail_unless( !strcmp(getchar, name) );
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestSubmodel.c:153:8:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  free(getchar);
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestSubmodel.c:177:24:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  fail_unless( !strcmp(getchar, modelRef) );
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestSubmodel.c:184:8:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  free(getchar);
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestSubmodel.c:225:24:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  fail_unless( !strcmp(getchar, timeConversionFactor) );
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestSubmodel.c:232:8:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  free(getchar);
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestSubmodel.c:256:24:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  fail_unless( !strcmp(getchar, extentConversionFactor) );
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/sbml/test/TestSubmodel.c:263:8:  [1] (buffer) getchar:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  free(getchar);
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/util/test/TestRunner.c:152:46:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  int  length  = (srcdir == NULL) ? 0 : (int)strlen(srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/comp/util/test/TestRunner.c:163:5:  [1] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant character.
    strcat(TestDataDirectory, "/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/distrib/extension/test/TestRunner.cpp:79:46:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  int  length  = (srcdir == NULL) ? 0 : (int)strlen(srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/distrib/extension/test/TestRunner.cpp:90:5:  [1] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant character.
    strcat(TestDataDirectory, "/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/distrib/sbml/UncertParameter.cpp:1755:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  return read;
data/libsbml-5.18.0+dfsg/src/sbml/packages/distrib/sbml/test/TestRunner.cpp:76:46:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  int  length  = (srcdir == NULL) ? 0 : (int)strlen(srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/distrib/sbml/test/TestRunner.cpp:87:5:  [1] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant character.
    strcat(TestDataDirectory, "/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/distrib/util/test/TestRunner.cpp:145:46:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  int  length  = (srcdir == NULL) ? 0 : (int)strlen(srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/distrib/util/test/TestRunner.cpp:156:5:  [1] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant character.
    strcat(TestDataDirectory, "/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/dyn/extension/test/TestRunner.c:49:44:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  size_t  length  = (srcdir == NULL) ? 0 : strlen(srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/dyn/extension/test/TestRunner.c:60:5:  [1] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant character.
    strcat(TestDataDirectory, "/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:420:17:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  mAssociations.read(listOfGeneAssociations, LIBSBML_OVERRIDE_WARNING);
data/libsbml-5.18.0+dfsg/src/sbml/packages/fbc/extension/test/TestRunner.c:50:46:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  int  length  = (srcdir == NULL) ? 0 : (int)strlen(srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/fbc/extension/test/TestRunner.c:61:5:  [1] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant character.
    strcat(TestDataDirectory, "/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/groups/extension/test/TestRunner.c:62:44:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  size_t  length  = (srcdir == NULL) ? 0 : strlen(srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/groups/extension/test/TestRunner.c:73:5:  [1] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant character.
    strcat(TestDataDirectory, "/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/l3v2extendedmath/extension/test/TestRunner.c:68:46:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  int  length  = (srcdir == NULL) ? 0 : (int)strlen(srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/l3v2extendedmath/extension/test/TestRunner.c:79:5:  [1] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant character.
    strcat(TestDataDirectory, "/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:297:12:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  mLayouts.read(listOfLayouts, LIBSBML_OVERRIDE_WARNING);
data/libsbml-5.18.0+dfsg/src/sbml/packages/layout/sbml/test/TestGraphicalObject.cpp:349:29:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  fail_unless(strcmp(result,read) == 0);
data/libsbml-5.18.0+dfsg/src/sbml/packages/layout/sbml/test/TestGraphicalObject.cpp:351:13:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  safe_free(read);
data/libsbml-5.18.0+dfsg/src/sbml/packages/layout/sbml/test/TestRunner.c:99:46:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  int  length  = (srcdir == NULL) ? 0 : (int)strlen(srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/layout/sbml/test/utility.cpp:17:10:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
  equal=(equal && (node1.getURI()==node2.getURI()));
data/libsbml-5.18.0+dfsg/src/sbml/packages/layout/sbml/test/utility.cpp:23:9:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
  while(equal && i<iMax)
data/libsbml-5.18.0+dfsg/src/sbml/packages/layout/sbml/test/utility.cpp:28:12:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
    equal=(equal && (attr1.getURI(i)==attr2.getURI(i)));
data/libsbml-5.18.0+dfsg/src/sbml/packages/layout/sbml/test/utility.cpp:34:10:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
  equal=(equal && (iMax==(int)node2.getNumChildren()));
data/libsbml-5.18.0+dfsg/src/sbml/packages/layout/sbml/test/utility.cpp:35:9:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
  while(equal && i<iMax)
data/libsbml-5.18.0+dfsg/src/sbml/packages/layout/sbml/test/utility.cpp:40:10:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
  return equal;
data/libsbml-5.18.0+dfsg/src/sbml/packages/multi/extension/MultiASTPlugin.cpp:114:17:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
MultiASTPlugin::read(XMLInputStream& stream, const std::string& reqd_prefix,
data/libsbml-5.18.0+dfsg/src/sbml/packages/multi/extension/MultiASTPlugin.cpp:119:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  return read;
data/libsbml-5.18.0+dfsg/src/sbml/packages/multi/extension/MultiASTPlugin.cpp:262:12:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
    return read;
data/libsbml-5.18.0+dfsg/src/sbml/packages/multi/extension/MultiASTPlugin.cpp:291:12:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
    return read;
data/libsbml-5.18.0+dfsg/src/sbml/packages/multi/extension/MultiASTPlugin.h:267:16:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  virtual bool read(XMLInputStream& stream, const std::string& reqd_prefix,
data/libsbml-5.18.0+dfsg/src/sbml/packages/multi/extension/test/TestRunner.c:50:59:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  int  length  = (srcdir == NULL) ? 0 : static_cast<int>( strlen(srcdir) );
data/libsbml-5.18.0+dfsg/src/sbml/packages/multi/extension/test/TestRunner.c:61:5:  [1] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant character.
    strcat(TestDataDirectory, "/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/multi/sbml/test/TestRunner.c:77:41:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  int  length  = (srcdir == NULL) ? 0 : strlen(srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/multi/sbml/test/TestRunner.c:88:5:  [1] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant character.
    strcat(TestDataDirectory, "/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/qual/extension/test/TestRunner.c:71:46:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  int  length  = (srcdir == NULL) ? 0 : (int)strlen(srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/qual/extension/test/TestRunner.c:82:5:  [1] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant character.
    strcat(TestDataDirectory, "/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.cpp:813:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  return read;
data/libsbml-5.18.0+dfsg/src/sbml/packages/qual/sbml/test/TestRunner.c:79:46:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  int  length  = (srcdir == NULL) ? 0 : (int)strlen(srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/qual/sbml/test/TestRunner.c:90:5:  [1] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant character.
    strcat(TestDataDirectory, "/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:557:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  return read;
data/libsbml-5.18.0+dfsg/src/sbml/packages/render/sbml/RelAbsVector.cpp:291:9:  [1] (buffer) strncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
        strncpy(s,trimmed.c_str(),trimmed.size()+1);
data/libsbml-5.18.0+dfsg/src/sbml/packages/render/sbml/test/TestRunner.c:120:41:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  int  length  = (srcdir == NULL) ? 0 : strlen(srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/req/extension/test/TestRunner.c:50:41:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  int  length  = (srcdir == NULL) ? 0 : strlen(srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/req/extension/test/TestRunner.c:61:5:  [1] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant character.
    strcat(TestDataDirectory, "/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/spatial/extension/test/TestRunner.c:48:41:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  int  length  = (srcdir == NULL) ? 0 : strlen(srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/spatial/extension/test/TestRunner.c:59:5:  [1] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant character.
    strcat(TestDataDirectory, "/");
data/libsbml-5.18.0+dfsg/src/sbml/packages/spatial/sbml/AnalyticVolume.cpp:1278:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
  return read;
data/libsbml-5.18.0+dfsg/src/sbml/packages/spatial/sbml/test/TestRunner.c:76:44:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  size_t  length  = (srcdir == NULL) ? 0 : strlen(srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/packages/spatial/sbml/test/TestRunner.c:87:5:  [1] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant character.
    strcat(TestDataDirectory, "/");
data/libsbml-5.18.0+dfsg/src/sbml/test/TestRunner.c:197:44:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  size_t  length  = (srcdir == NULL) ? 0 : strlen(srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/test/TestRunner.c:208:5:  [1] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant character.
    strcat(TestDataDirectory, "/");
data/libsbml-5.18.0+dfsg/src/sbml/units/test/TestRunner.c:90:44:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  size_t  length  = (srcdir == NULL) ? 0 : strlen(srcdir);
data/libsbml-5.18.0+dfsg/src/sbml/units/test/TestRunner.c:101:5:  [1] (buffer) strcat:
  Does not check for buffer overflows when concatenating to destination
  [MS-banned] (CWE-120). Consider using strcat_s, strncat, strlcat, or
  snprintf (warning: strncat is easily misused). Risk is low because the
  source is a constant character.
    strcat(TestDataDirectory, "/");
data/libsbml-5.18.0+dfsg/src/sbml/util/StringBuffer.c:90:24:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  len = (unsigned long)strlen(s);  
data/libsbml-5.18.0+dfsg/src/sbml/util/StringBuffer.c:94:3:  [1] (buffer) strncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
  strncpy(sb->buffer + sb->length, s, len + 1);
data/libsbml-5.18.0+dfsg/src/sbml/util/StringBuffer.c:108:3:  [1] (buffer) strncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
  strncpy(sb->buffer + sb->length, s, len + 1);
data/libsbml-5.18.0+dfsg/src/sbml/util/StringBuffer.c:259:3:  [1] (buffer) strncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
  strncpy(s, sb->buffer, sb->length + 1);
data/libsbml-5.18.0+dfsg/src/sbml/util/test/TestUtil.c:219:3:  [1] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused). Risk is low because the source is a constant character.
  strcpy(s, "p");
data/libsbml-5.18.0+dfsg/src/sbml/util/test/TestUtil.c:246:3:  [1] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused). Risk is low because the source is a constant character.
  strcpy(s, " ");
data/libsbml-5.18.0+dfsg/src/sbml/util/test/TestUtil.c:249:3:  [1] (buffer) strcpy:
  Does not check for buffer overflows when copying to destination [MS-banned]
  (CWE-120). Consider using snprintf, strcpy_s, or strlcpy (warning: strncpy
  easily misused). Risk is low because the source is a constant character.
  strcpy(s, "");
data/libsbml-5.18.0+dfsg/src/sbml/util/util.cpp:194:18:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  len1    = (int)strlen(str1);
data/libsbml-5.18.0+dfsg/src/sbml/util/util.cpp:195:18:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  len2    = (int)strlen(str2);
data/libsbml-5.18.0+dfsg/src/sbml/util/util.cpp:199:3:  [1] (buffer) strncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
  strncpy(concat, str1, (size_t)len1 + 1);
data/libsbml-5.18.0+dfsg/src/sbml/util/util.cpp:201:3:  [1] (buffer) strncat:
  Easily used incorrectly (e.g., incorrectly computing the correct maximum
  size to add) [MS-banned] (CWE-120). Consider strcat_s, strlcat, snprintf,
  or automatically resizing strings.
  strncat(concat, str2, (size_t)len2);
data/libsbml-5.18.0+dfsg/src/sbml/util/util.cpp:216:15:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  size      = strlen(s) + 1;
data/libsbml-5.18.0+dfsg/src/sbml/util/util.cpp:220:3:  [1] (buffer) strncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
  strncpy(duplicate, s, size);
data/libsbml-5.18.0+dfsg/src/sbml/util/util.cpp:316:14:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  len = (int)strlen(s);
data/libsbml-5.18.0+dfsg/src/sbml/util/util.cpp:360:5:  [1] (buffer) strncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
    strncpy(trimmed, start, (size_t)len);
data/libsbml-5.18.0+dfsg/src/sbml/util/util.cpp:378:14:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  len = (int)strlen(s);
data/libsbml-5.18.0+dfsg/src/sbml/xml/ExpatParser.cpp:303:44:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
    mSource = new XMLMemoryBuffer(content, strlen(content));
data/libsbml-5.18.0+dfsg/src/sbml/xml/LibXMLParser.cpp:381:58:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
    mSource = new XMLMemoryBuffer(content, (unsigned int)strlen(content));
data/libsbml-5.18.0+dfsg/src/sbml/xml/XMLFileBuffer.cpp:131:14:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
    mStream->read( static_cast<char*>(destination), bytes);
data/libsbml-5.18.0+dfsg/src/sbml/xml/XMLMemoryBuffer.cpp:59:21:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
  size_t bufsize  = strlen(buffer);
data/libsbml-5.18.0+dfsg/src/sbml/xml/XMLMemoryBuffer.cpp:62:3:  [1] (buffer) strncpy:
  Easily used incorrectly; doesn't always \0-terminate or check for invalid
  pointers [MS-banned] (CWE-120).
  strncpy(tmpbuf, buffer, bufsize+1);
data/libsbml-5.18.0+dfsg/src/sbml/xml/XMLNode.cpp:437:8:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
  bool equal;//=true;
data/libsbml-5.18.0+dfsg/src/sbml/xml/XMLNode.cpp:440:8:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
  if (!equal) 
data/libsbml-5.18.0+dfsg/src/sbml/xml/XMLNode.cpp:444:8:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
  if (!equal)
data/libsbml-5.18.0+dfsg/src/sbml/xml/XMLNode.cpp:454:9:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
  while(equal && i<iMax)
data/libsbml-5.18.0+dfsg/src/sbml/xml/XMLNode.cpp:460:12:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
    equal=(equal && (attr1.getURI(i)==attr2.getURI(attr2Index)
data/libsbml-5.18.0+dfsg/src/sbml/xml/XMLNode.cpp:466:14:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
    equal = (equal && (attr1.getValue(i) == attr2.getValue(attr2Index)));
data/libsbml-5.18.0+dfsg/src/sbml/xml/XMLNode.cpp:473:10:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
  equal=(equal && (iMax==(int)other.getNumChildren()));
data/libsbml-5.18.0+dfsg/src/sbml/xml/XMLNode.cpp:474:9:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
  while(equal && i<iMax)
data/libsbml-5.18.0+dfsg/src/sbml/xml/XMLNode.cpp:479:10:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
  return equal; 
data/libsbml-5.18.0+dfsg/src/sbml/xml/XercesParser.cpp:456:33:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
      if ( xmlstring == NULL || strlen(xmlstring) == 0)
data/libsbml-5.18.0+dfsg/src/sbml/xml/XercesParser.cpp:462:31:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
      unsigned int   size   = strlen(xmlstring);
data/libsbml-5.18.0+dfsg/src/sbml/xml/XercesParser.cpp:494:32:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
    const unsigned int size  = strlen(content);

ANALYSIS SUMMARY:

Hits = 713
Lines analyzed = 1688549 in approximately 39.96 seconds (42251 lines/second)
Physical Source Lines of Code (SLOC) = 1038360
Hits@level = [0] 454 [1] 288 [2] 279 [3]  69 [4]  77 [5]   0
Hits@level+ = [0+] 1167 [1+] 713 [2+] 425 [3+] 146 [4+]  77 [5+]   0
Hits/KSLOC@level+ = [0+] 1.12389 [1+] 0.68666 [2+] 0.409299 [3+] 0.140606 [4+] 0.0741554 [5+]   0
Dot directories skipped = 2 (--followdotdir overrides)
Minimum risk level = 1
Not every hit is necessarily a security vulnerability.
There may be other security vulnerabilities; review your code!
See 'Secure Programming HOWTO'
(https://dwheeler.com/secure-programs) for more information.