Flawfinder version 2.0.10, (C) 2001-2019 David A. Wheeler.
Number of rules (primarily dangerous function names) in C/C++ ruleset: 223
Examining data/prime-phylo-1.0.11/src/cxx/libraries/prime/TreeMCMC.cc
Examining data/prime-phylo-1.0.11/src/cxx/libraries/prime/HybridTreeIO.cc
Examining data/prime-phylo-1.0.11/src/cxx/libraries/prime/NodeNodeMap.cc
Examining data/prime-phylo-1.0.11/src/cxx/libraries/prime/HybridBranchSwapping.cc
Examining data/prime-phylo-1.0.11/src/cxx/libraries/prime/BirthDeathInHybridMCMC.cc
Examining data/prime-phylo-1.0.11/src/cxx/libraries/prime/DP_ML.cc
Examining data/prime-phylo-1.0.11/src/cxx/libraries/prime/EnumerateReconciliationModel.cc
Examining data/prime-phylo-1.0.11/src/cxx/libraries/prime/EdgeRateMCMC.cc
Examining data/prime-phylo-1.0.11/src/cxx/libraries/prime/StdMCMCModel.cc
Examining data/prime-phylo-1.0.11/src/cxx/libraries/prime/EdgeDiscBDMCMC.cc
Examining data/prime-phylo-1.0.11/src/cxx/libraries/prime/InvGaussDensity.cc
Examining data/prime-phylo-1.0.11/src/cxx/libraries/prime/BDTreeGenerator.cc
Examining data/prime-phylo-1.0.11/src/cxx/libraries/prime/SubstitutionModel.cc
Examining data/prime-phylo-1.0.11/src/cxx/libraries/prime/EpochTree.cc
Examining data/prime-phylo-1.0.11/src/cxx/libraries/prime/BeepOption.cc
Examining data/prime-phylo-1.0.11/src/cxx/libraries/prime/ReconciledTreeModel.cc
Examining data/prime-phylo-1.0.11/src/cxx/libraries/prime/EdgeWeightHandler.cc
Examining data/prime-phylo-1.0.11/src/cxx/libraries/prime/SeqIO.cc
Examining data/prime-phylo-1.0.11/src/cxx/libraries/prime/Tree.cc
Examining data/prime-phylo-1.0.11/src/cxx/libraries/prime/SequenceGenerator.cc
Examining data/prime-phylo-1.0.11/src/cxx/libraries/prime/Beep.cc