Flawfinder version 2.0.10, (C) 2001-2019 David A. Wheeler. Number of rules (primarily dangerous function names) in C/C++ ruleset: 223 Examining data/schroedinger-coordgenlibs-1.4.2/CoordgenConfig.hpp Examining data/schroedinger-coordgenlibs-1.4.2/CoordgenFragmentBuilder.cpp Examining data/schroedinger-coordgenlibs-1.4.2/CoordgenFragmentBuilder.h Examining data/schroedinger-coordgenlibs-1.4.2/CoordgenFragmenter.cpp Examining data/schroedinger-coordgenlibs-1.4.2/CoordgenFragmenter.h Examining data/schroedinger-coordgenlibs-1.4.2/CoordgenMacrocycleBuilder.cpp Examining data/schroedinger-coordgenlibs-1.4.2/CoordgenMacrocycleBuilder.h Examining data/schroedinger-coordgenlibs-1.4.2/CoordgenMinimizer.cpp Examining data/schroedinger-coordgenlibs-1.4.2/CoordgenMinimizer.h Examining data/schroedinger-coordgenlibs-1.4.2/CoordgenTemplates.cpp Examining data/schroedinger-coordgenlibs-1.4.2/CoordgenTemplates.h Examining data/schroedinger-coordgenlibs-1.4.2/example_dir/example.cpp Examining data/schroedinger-coordgenlibs-1.4.2/sketcherMaeReading.h Examining data/schroedinger-coordgenlibs-1.4.2/sketcherMinimizer.cpp Examining data/schroedinger-coordgenlibs-1.4.2/sketcherMinimizer.h Examining data/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerAtom.cpp Examining data/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerAtom.h Examining data/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerBendInteraction.h Examining data/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerBond.cpp Examining data/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerBond.h Examining data/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerClashInteraction.h Examining data/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerConstraintInteraction.h Examining data/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerEZConstrainInteraction.h Examining data/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerFragment.cpp Examining data/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerFragment.h Examining data/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerInteraction.h Examining data/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerMarchingSquares.cpp Examining data/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerMarchingSquares.h Examining data/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerMaths.h Examining data/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerMolecule.cpp Examining data/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerMolecule.h Examining data/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerResidue.cpp Examining data/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerResidue.h Examining data/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerResidueInteraction.cpp Examining data/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerResidueInteraction.h Examining data/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerRing.cpp Examining data/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerRing.h Examining data/schroedinger-coordgenlibs-1.4.2/sketcherMinimizerStretchInteraction.h Examining data/schroedinger-coordgenlibs-1.4.2/test/test_coordgen.cpp FINAL RESULTS: data/schroedinger-coordgenlibs-1.4.2/sketcherMinimizer.cpp:3527:18: [2] (misc) fopen: Check when opening files - can an attacker redirect it (via symlinks), force the opening of special file type (e.g., device files), move things around to create a race condition, control its ancestors, or change its contents? (CWE-362). auto pFile = fopen(filename.c_str(), "r"); ANALYSIS SUMMARY: Hits = 1 Lines analyzed = 20479 in approximately 0.54 seconds (37827 lines/second) Physical Source Lines of Code (SLOC) = 17218 Hits@level = [0] 0 [1] 0 [2] 1 [3] 0 [4] 0 [5] 0 Hits@level+ = [0+] 1 [1+] 1 [2+] 1 [3+] 0 [4+] 0 [5+] 0 Hits/KSLOC@level+ = [0+] 0.0580788 [1+] 0.0580788 [2+] 0.0580788 [3+] 0 [4+] 0 [5+] 0 Dot directories skipped = 2 (--followdotdir overrides) Minimum risk level = 1 Not every hit is necessarily a security vulnerability. There may be other security vulnerabilities; review your code! See 'Secure Programming HOWTO' (https://dwheeler.com/secure-programs) for more information.