Flawfinder version 2.0.10, (C) 2001-2019 David A. Wheeler.
Number of rules (primarily dangerous function names) in C/C++ ruleset: 223
Examining data/seqan3-3.0.2+ds/doc/howto/write_a_view/view_exercise1.cpp
Examining data/seqan3-3.0.2+ds/doc/howto/write_a_view/view_exercise2.cpp
Examining data/seqan3-3.0.2+ds/doc/howto/write_a_view/solution_iterator.cpp
Examining data/seqan3-3.0.2+ds/doc/howto/write_a_view/solution_view.cpp
Examining data/seqan3-3.0.2+ds/doc/howto/use_cereal/store.hpp
Examining data/seqan3-3.0.2+ds/doc/howto/use_cereal/load.hpp
Examining data/seqan3-3.0.2+ds/doc/howto/write_an_alphabet/dna2_semialphabet.cpp
Examining data/seqan3-3.0.2+ds/doc/howto/write_an_alphabet/dna2_equality_operator.cpp
Examining data/seqan3-3.0.2+ds/doc/howto/write_an_alphabet/dna2_inequality_operator.cpp
Examining data/seqan3-3.0.2+ds/doc/howto/write_an_alphabet/dna2_only_rank.cpp
Examining data/seqan3-3.0.2+ds/doc/howto/write_an_alphabet/dna2_alphabet.cpp
Examining data/seqan3-3.0.2+ds/doc/howto/write_an_alphabet/dna2_comparison_operators.cpp
Examining data/seqan3-3.0.2+ds/doc/howto/write_an_alphabet/dna2_derive_from_base.cpp
Examining data/seqan3-3.0.2+ds/doc/howto/subcommand_argument_parser/subcommand_arg_parse.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/alignment_file/alignment_file_read_cigar.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/alignment_file/alignment_file_solution2.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/alignment_file/alignment_file_solution3.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/alignment_file/alignment_file_snippets.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/alignment_file/alignment_file_solution1.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/search/search_solution1.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/search/cleanup.hpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/search/search_small_snippets.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/search/search_basic_search.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/search/search_basic_index.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/search/search_span.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/search/search_solution4.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/search/search_solution5.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/search/search_solution3.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/search/search_solution2.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/introduction/introduction_read_fasta.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/introduction/introduction_align.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/introduction/introduction_argument_parser.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/introduction/introduction_file_input.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/introduction/introduction_hello_world.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/introduction/introduction_debug_stream.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/sequence_file/sequence_file_solution1.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/sequence_file/sequence_file_solution4.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/sequence_file/sequence_file_snippets.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/sequence_file/sequence_file_solution3.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/sequence_file/sequence_file_solution5.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/sequence_file/sequence_file_solution2.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/argument_parser/solution5.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/argument_parser/solution3.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/argument_parser/small_snippets.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/argument_parser/basic_parser_setup.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/argument_parser/solution4.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/argument_parser/solution6.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/argument_parser/solution1.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/argument_parser/disable_version_check.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/read_mapper/read_mapper_step2.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/read_mapper/read_mapper_step4.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/read_mapper/read_mapper_step1.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/read_mapper/read_mapper_indexer_step3.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/read_mapper/read_mapper_indexer_step2.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/read_mapper/read_mapper_step3.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/read_mapper/read_mapper_indexer_step1.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/pairwise_alignment/pairwise_alignment_solution_1.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/pairwise_alignment/configurations.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/pairwise_alignment/pairwise_alignment_solution_3.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/pairwise_alignment/pairwise_alignment_solution_6.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/pairwise_alignment/pairwise_alignment_solution_4.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/pairwise_alignment/pairwise_alignment_solution_5.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/pairwise_alignment/pairwise_alignment_solution_2.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/pairwise_alignment/pa_assignment_3_solution.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/pairwise_alignment/pairwise_alignment_first_global.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/ranges/range_solution3.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/ranges/range_solution1.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/ranges/range_snippets.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/ranges/range_solution4.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/ranges/views/minimiser/minimiser_solution2.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/ranges/views/minimiser/minimiser_solution3.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/ranges/views/minimiser/minimiser_snippets.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/ranges/views/minimiser/minimiser_solution1.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/ranges/views/minimiser/seed_example.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/alphabet/alphabet_main.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/alphabet/alphabet_gc_content.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/concepts/custom_validator_solution2.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/concepts/overloading2.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/concepts/specialisation.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/concepts/custom_validator_solution1.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/concepts/overloading_solution1.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/concepts/overloading_solution2.cpp
Examining data/seqan3-3.0.2+ds/doc/tutorial/concepts/overloading1.cpp
Examining data/seqan3-3.0.2+ds/doc/setup/quickstart_cmake/hello_world.cpp
Examining data/seqan3-3.0.2+ds/doc/cookbook/custom_dna4.cpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/char_operations/pretty_print.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/char_operations/predicate.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/char_operations/transform.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/char_operations/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/char_operations/predicate_detail.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/algorithm/concept.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/algorithm/configuration_element_debug_mode.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/algorithm/detail/algorithm_executor_blocking.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/algorithm/detail/execution_handler_sequential.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/algorithm/detail/execution_handler_parallel.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/algorithm/detail/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/algorithm/bound.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/algorithm/pipeable_config_element.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/algorithm/configuration_element_parallel_mode.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/algorithm/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/algorithm/configuration.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/algorithm/configuration_utility.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/algorithm/algorithm_result_generator_range.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/detail/debug_stream_alphabet.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/detail/debug_stream_tuple.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/detail/debug_stream_optional.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/detail/test_accessor.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/detail/empty_type.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/detail/pack_algorithm.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/detail/debug_stream_range.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/detail/endian.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/detail/customisation_point.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/detail/int_types.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/detail/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/detail/debug_stream_type.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/detail/to_string.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/detail/type_inspection.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/detail/debug_stream_variant.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/detail/strong_type.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/type_traits/pack.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/type_traits/concept.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/type_traits/iterator.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/type_traits/basic.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/type_traits/lazy.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/type_traits/transformation_trait_or.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/type_traits/deferred_crtp_base.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/type_traits/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/type_traits/template_inspection.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/type_traits/range.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/type_traits/function.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/type_traits/pre.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/tuple_utility.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/semiregular_box.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/common_tuple.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/type_list/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/type_list/traits.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/type_list/type_list.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/debug_stream.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/add_enum_bitwise_operators.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/parallel/detail/reader_writer_manager.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/parallel/detail/latch.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/parallel/detail/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/parallel/detail/spin_delay.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/parallel/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/parallel/execution.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/concept/tuple.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/concept/core_language.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/concept/cereal.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/concept/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/bit_manipulation.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/simd/concept.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/simd/detail/simd_algorithm_avx2.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/simd/detail/simd_algorithm_avx512.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/simd/detail/simd_algorithm_sse4.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/simd/detail/builtin_simd.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/simd/detail/default_simd_length.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/simd/detail/default_simd_backend.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/simd/detail/builtin_simd_intrinsics.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/simd/view_iota_simd.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/simd/simd_algorithm.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/simd/simd_traits.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/simd/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/simd/view_to_simd.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/simd/debug_stream_simd.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/simd/simd.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/math.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/pod_tuple.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/core/platform.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/configuration/max_error_common.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/configuration/hit.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/configuration/default_configuration.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/configuration/max_error.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/configuration/parallel.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/configuration/detail.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/configuration/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/configuration/on_result.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/configuration/output.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/configuration/result_type.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/detail/search_scheme_algorithm.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/detail/unidirectional_search_algorithm.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/detail/search_configurator.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/detail/search_traits.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/detail/policy_search_result_builder.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/detail/search_scheme_precomputed.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/detail/search_common.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/detail/policy_max_error.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/search.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/fm_index/bi_fm_index.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/fm_index/concept.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/fm_index/detail/fm_index_cursor.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/fm_index/fm_index.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/fm_index/bi_fm_index_cursor.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/fm_index/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/fm_index/fm_index_cursor.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/search_result.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/kmer_index/shape.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/kmer_index/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/dream_index/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/concept.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/detail/random_access_iterator.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/detail/inherited_iterator_base.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/detail/misc.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/decorator/gap_decorator.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/decorator/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/container/aligned_allocator.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/container/concept.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/container/dynamic_bitset.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/container/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/container/bitcompressed_vector.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/container/concatenated_sequences.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/container/small_vector.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/container/small_string.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/shortcuts.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/hash.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/async_input_buffer.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/to_upper.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/join.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/single_pass_input.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/repeat.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/pairwise_combine.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/to.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/get.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/to_rank.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/repeat_n.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/chunk.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/complement.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/persist.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/detail.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/type_reduce.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/char_to.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/drop.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/as_const.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/move.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/convert.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/zip.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/to_lower.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/take_until.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/minimiser.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/rank_to.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/deep.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/translate_join.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/take_exactly.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/slice.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/minimiser_hash.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/interleave.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/trim_quality.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/take.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/to_char.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/enforce_random_access.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/kmer_hash.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/translate.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/take_line.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/range/views/istreambuf.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/contrib/stream/bgzf_ostream.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/contrib/stream/gz_istream.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/contrib/stream/bgzf_stream_util.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/contrib/stream/bz2_ostream.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/contrib/stream/bgzf_istream.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/contrib/stream/gz_ostream.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/contrib/stream/bz2_istream.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/contrib/charconv/charconv.cpp
Examining data/seqan3-3.0.2+ds/include/seqan3/contrib/charconv/charconv_pre.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/contrib/parallel/serialised_resource_pool.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/contrib/parallel/suspendable_queue.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/contrib/parallel/buffer_queue.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/version.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/detail/in_file_iterator.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/detail/magic_header.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/detail/safe_filesystem_entry.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/detail/record.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/detail/misc_output.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/detail/misc.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/detail/ignore_output_iterator.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/detail/out_file_iterator.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/detail/misc_input.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/alignment_file/output_format_concept.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/alignment_file/input_options.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/alignment_file/input_format_concept.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/alignment_file/format_sam.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/alignment_file/input.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/alignment_file/detail.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/alignment_file/sam_tag_dictionary.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/alignment_file/header.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/alignment_file/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/alignment_file/output_options.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/alignment_file/misc.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/alignment_file/format_bam.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/alignment_file/output.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/alignment_file/format_sam_base.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/stream/concept.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/stream/iterator.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/stream/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/sequence_file/format_genbank.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/sequence_file/output_format_concept.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/sequence_file/input_options.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/sequence_file/input_format_concept.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/sequence_file/format_fasta.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/sequence_file/format_embl.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/sequence_file/input.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/sequence_file/format_fastq.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/sequence_file/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/sequence_file/output_options.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/sequence_file/output.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/record.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/exception.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/structure_file/output_format_concept.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/structure_file/input_options.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/structure_file/input_format_concept.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/structure_file/input.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/structure_file/detail.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/structure_file/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/structure_file/output_options.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/structure_file/format_vienna.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/io/structure_file/output.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/argument_parser/detail/version_check.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/argument_parser/detail/format_help.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/argument_parser/detail/format_base.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/argument_parser/detail/format_man.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/argument_parser/detail/format_html.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/argument_parser/detail/terminal.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/argument_parser/detail/format_parse.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/argument_parser/auxiliary.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/argument_parser/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/argument_parser/validators.hpp
Parsing failed to find end of parameter list; semicolon terminated it in (ext, drop_less_ext, [] (char const chr1, char const chr2)
                   {
                       return std::tolower(chr1) == std::tolower(chr2);
                   });
        };

        // Ch
Examining data/seqan3-3.0.2+ds/include/seqan3/argument_parser/exceptions.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/argument_parser/argument_parser.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/gap/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/gap/gapped.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/gap/gap.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/concept.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/aminoacid/translation_details.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/aminoacid/concept.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/aminoacid/aa27.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/aminoacid/aa10murphy.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/aminoacid/aminoacid_base.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/aminoacid/translation.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/aminoacid/aa10li.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/aminoacid/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/aminoacid/aa20.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/aminoacid/translation_genetic_code.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/mask/mask.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/mask/masked.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/mask/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/composite/semialphabet_any.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/composite/alphabet_variant.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/composite/detail.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/composite/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/structure/concept.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/structure/dot_bracket3.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/structure/structured_rna.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/structure/structured_aa.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/structure/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/structure/dssp9.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/structure/wuss.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/detail/alphabet_proxy.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/detail/convert.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/alphabet_base.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/quality/concept.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/quality/phred63.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/quality/qualified.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/quality/quality_base.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/quality/aliases.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/quality/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/quality/phred68legacy.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/quality/phred42.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/hash.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/nucleotide/concept.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/nucleotide/dna15.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/nucleotide/rna15.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/nucleotide/rna4.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/nucleotide/rna5.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/nucleotide/dna5.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/nucleotide/nucleotide_base.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/nucleotide/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/nucleotide/sam_dna16.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/nucleotide/dna3bs.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/nucleotide/dna4.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/exception.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/adaptation/uint.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/adaptation/char.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/adaptation/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/cigar/cigar.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/cigar/cigar_op.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alphabet/cigar/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/aligned_sequence/debug_stream_alignment.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/aligned_sequence/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/aligned_sequence/aligned_sequence_concept.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/scoring/detail/simd_match_mismatch_scoring_scheme.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/scoring/detail/simd_matrix_scoring_scheme.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/scoring/scoring_scheme_concept.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/scoring/aminoacid_scoring_scheme.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/scoring/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/scoring/scoring_scheme_base.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/scoring/nucleotide_scoring_scheme.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/scoring/gap_scheme.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/configuration/align_config_edit.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/configuration/align_config_on_result.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/configuration/align_config_result_type.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/configuration/align_config_score_type.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/configuration/align_config_output.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/configuration/align_config_band.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/configuration/detail.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/configuration/align_config_gap_cost_affine.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/configuration/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/configuration/align_config_debug.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/configuration/align_config_vectorised.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/configuration/align_config_min_score.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/configuration/align_config_method.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/configuration/align_config_scoring_scheme.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/configuration/align_config_parallel.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/edit_distance_trace_matrix_full.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/row_wise_matrix.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/detail/affine_cell_proxy.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/detail/alignment_trace_matrix_base.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/detail/two_dimensional_matrix_iterator_concept.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/detail/alignment_score_matrix_proxy.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/detail/matrix_coordinate.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/detail/aligned_sequence_builder.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/detail/alignment_trace_matrix_proxy.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/detail/two_dimensional_matrix.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/detail/alignment_matrix_column_major_range_base.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/detail/coordinate_matrix.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/detail/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column_banded.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/detail/trace_iterator_banded.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/detail/alignment_trace_matrix_full.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/detail/trace_matrix_full.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/detail/score_matrix_single_column.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/detail/trace_iterator_base.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/detail/alignment_trace_matrix_full_banded.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/detail/two_dimensional_matrix_iterator_base.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column_base.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/detail/trace_iterator.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/edit_distance_score_matrix_full.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/matrix_concept.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/alignment_trace_algorithms.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/debug_matrix.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/alignment_coordinate.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/trace_directions.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/alignment_optimum.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/edit_distance_algorithm.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/detail/concept.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/detail/policy_alignment_result_builder.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/detail/policy_alignment_matrix.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/detail/alignment_algorithm_state.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/detail/policy_affine_gap_recursion_banded.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/detail/pairwise_alignment_algorithm_banded.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/detail/type_traits.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/detail/policy_affine_gap_recursion.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/detail/policy_optimum_tracker_simd.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/detail/pairwise_alignment_algorithm.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/detail/policy_optimum_tracker.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/detail/policy_scoring_scheme.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/policy/affine_gap_init_policy.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/policy/alignment_matrix_policy.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/policy/find_optimum_policy.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/policy/scoring_scheme_policy.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/policy/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/policy/affine_gap_policy.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/policy/simd_affine_gap_policy.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/policy/simd_find_optimum_policy.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/edit_distance_unbanded.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/alignment_configurator.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/alignment_algorithm.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/alignment_result.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/edit_distance_fwd.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/align_pairwise.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/pairwise/align_result_selector.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/band/all.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/band/static_band.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/exception.hpp
Examining data/seqan3-3.0.2+ds/include/seqan3/alignment/all.hpp
Examining data/seqan3-3.0.2+ds/test/include/seqan3/test/tmp_filename.hpp
Examining data/seqan3-3.0.2+ds/test/include/seqan3/test/simd_utility.hpp
Examining data/seqan3-3.0.2+ds/test/include/seqan3/test/expect_range_eq.hpp
Examining data/seqan3-3.0.2+ds/test/include/seqan3/test/seqan2.hpp
Examining data/seqan3-3.0.2+ds/test/include/seqan3/test/cereal.hpp
Examining data/seqan3-3.0.2+ds/test/include/seqan3/test/pretty_printing.hpp
Examining data/seqan3-3.0.2+ds/test/include/seqan3/test/performance/seqan2_minimiser.h
Examining data/seqan3-3.0.2+ds/test/include/seqan3/test/performance/naive_kmer_hash.hpp
Examining data/seqan3-3.0.2+ds/test/include/seqan3/test/performance/naive_minimiser_hash.hpp
Examining data/seqan3-3.0.2+ds/test/include/seqan3/test/performance/units.hpp
Examining data/seqan3-3.0.2+ds/test/include/seqan3/test/performance/sequence_generator.hpp
Examining data/seqan3-3.0.2+ds/test/unit/core/add_enum_bitwise_operators_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/char_operations/char_predicate_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/algorithm/pipeable_config_element_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/algorithm/detail/execution_handler_parallel_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/algorithm/detail/execution_handler_sequential_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/algorithm/detail/algorithm_executor_blocking_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/algorithm/detail/execution_handler_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/core/algorithm/configuration_mock.hpp
Examining data/seqan3-3.0.2+ds/test/unit/core/algorithm/algorithm_result_generator_range_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/algorithm/pipeable_config_element_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/core/algorithm/configuration_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/algorithm/bound_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/tuple_utility_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/detail/int_types_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/detail/strong_type_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/detail/strong_type_debug_stream_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/detail/pack_algorithm_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/detail/type_inspection_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/detail/debug_stream_type_tuple_alignment_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/my_tuple.hpp
Examining data/seqan3-3.0.2+ds/test/unit/core/type_traits/type_traits_iterator_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/type_traits/template_inspection_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/type_traits/lazy_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/type_traits/function_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/type_traits/basic_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/type_traits/range_iterator_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/type_traits/transformation_trait_or_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/type_traits/deferred_crtp_base_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/bit_manipulation_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/type_list_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/parallel/detail/reader_writer_manager_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/parallel/detail/latch_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/debug_stream_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/concept/cereal_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/simd/simd_algorithm_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/simd/detail/default_simd_length_builtin_simd_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/simd/detail/builtin_simd_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/simd/detail/default_simd_backend_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/simd/view_to_simd_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/simd/view_iota_simd_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/simd/debug_stream_simd_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/simd/simd_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/math_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/core/pod_tuple_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/std/algorithm_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/std/concept/auxiliary_iterator.hpp
Examining data/seqan3-3.0.2+ds/test/unit/std/concept/object_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/std/concept/comparison_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/std/concept/callable_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/std/concept/auxiliary.hpp
Examining data/seqan3-3.0.2+ds/test/unit/std/concept/range_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/std/concept/iterator_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/std/concept/core_language_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/std/ranges/move_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/std/ranges/find_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/std/charconv_float_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/std/ranges_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/std/charconv_int_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/search/configuration/on_result_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/search/configuration/hit_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/search/configuration/parallel_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/search/helper.hpp
Examining data/seqan3-3.0.2+ds/test/unit/search/search_scheme_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/search/sdsl_index_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/search/search_scheme_algorithm_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/search/fm_index_cursor/bi_fm_index_cursor_collection_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/search/fm_index_cursor/bi_fm_index_cursor_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/search/fm_index_cursor/fm_index_cursor_collection_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/search/fm_index_cursor/bi_fm_index_cursor_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/search/fm_index_cursor/fm_index_cursor_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/search/fm_index_cursor/bi_fm_index_cursor_collection_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/search/fm_index_cursor/fm_index_cursor_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/search/fm_index_cursor/fm_index_cursor_collection_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/search/search_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/search/fm_index/fm_index_collection_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/search/fm_index/bi_fm_index_char_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/search/fm_index/bi_fm_index_aa27_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/search/fm_index/fm_index_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/search/fm_index/bi_fm_index_dna4_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/search/fm_index/fm_index_dna4_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/search/helper_search_scheme.hpp
Examining data/seqan3-3.0.2+ds/test/unit/search/search_collection_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/search/search_configuration_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/search/kmer_index/shape_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/search/dream_index/interleaved_bloom_filter_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/detail/random_access_iterator_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/detail/inherited_iterator_base_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/decorator/gap_decorator_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/container/small_vector_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/container/container_concept_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/container/container_of_container_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/container/aligned_allocator_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/container/debug_stream_container_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/container/dynamic_bitset_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/container/bitcompressed_vector_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/container/debug_stream_container_of_container_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/container/small_string_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/container/container_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/range/iterator_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/adaptor_base_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_get_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_translate_join_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_istreambuf_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_repeat_n_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_to_upper_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_trim_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_zip_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_to_char_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_take_until_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_convert_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_pairwise_combine_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_rank_to_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_move_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_interleave_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_complement_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_take_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_to_lower_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_drop_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_slice_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_type_reduce_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_minimiser_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_translate_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_enforce_random_access_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_take_line_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_kmer_hash_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_to_rank_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_char_to_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_async_input_buffer_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_as_const_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_deep_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_persist_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_single_pass_input_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_repeat_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/range/views/view_minimiser_hash_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/contrib/stream/bgzf_istream_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/contrib/stream/bgzf_ostream_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/contrib/stream/bz2_ostream_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/contrib/stream/gz_istream_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/contrib/stream/bz2_istream_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/contrib/stream/gz_ostream_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/contrib/parallel/buffer_queue_base_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/contrib/parallel/buffer_queue_parallel_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/io/detail/in_file_iterator_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/io/detail/safe_filesystem_entry_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/io/detail/out_file_iterator_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/io/detail/misc_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/io/detail/ignore_output_iterator_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/io/concept_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/io/alignment_file/format_bam_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/io/alignment_file/format_sam_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/io/alignment_file/alignment_file_format_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/io/alignment_file/sam_tag_dictionary_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/io/alignment_file/alignment_file_output_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/io/alignment_file/alignment_file_input_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/io/stream/fast_streambuf_iterator_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/io/stream/istream_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/io/stream/ostream_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_input_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_format_embl_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_format_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_integration_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_format_fastq_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_format_sam_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_format_genbank_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_format_fasta_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_output_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/io/record_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/io/structure_file/format_vienna_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/io/structure_file/structure_file_input_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/io/structure_file/structure_file_output_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/argument_parser/detail/format_html_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/argument_parser/detail/version_check_test.hpp
Examining data/seqan3-3.0.2+ds/test/unit/argument_parser/detail/format_help_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/argument_parser/detail/format_man_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/argument_parser/detail/version_check_debug_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/argument_parser/detail/version_check_release_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/argument_parser/format_parse_validators_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/argument_parser/argument_parser_design_error_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/argument_parser/format_parse_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/gap/gap_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/gap/gapped_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/aminoacid/aminoacid_conversion_integration_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/aminoacid/aa10li_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/aminoacid/aa10murphy_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/aminoacid/aa20_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/aminoacid/aminoacid_translation_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/aminoacid/aminoacid_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/aminoacid/aa27_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/mask/masked_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/mask/mask_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/composite/alphabet_tuple_base_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/composite/composite_integration_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/composite/alphabet_variant_detail_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/composite/alphabet_tuple_base_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/composite/alphabet_variant_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/composite/semialphabet_any_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/structure/structured_rna_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/structure/dssp9_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/structure/dot_bracket3_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/structure/structured_aa_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/structure/wuss_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/alphabet_hash_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/detail/alphabet_proxy_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/custom_alphabet2_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/custom_alphabet3_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/semi_alphabet_constexpr_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/semi_alphabet_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/quality/phred68legacy_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/quality/qualified_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/quality/phred63_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/quality/phred_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/quality/quality_conversion_integration_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/quality/phred42_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/alphabet_constexpr_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/debug_stream_alphabet_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/nucleotide/dna4_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/nucleotide/dna15_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/nucleotide/rna15_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/nucleotide/dna5_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/nucleotide/nucleotide_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/nucleotide/dna3bs_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/nucleotide/rna4_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/nucleotide/sam_dna16_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/nucleotide/rna5_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/nucleotide/nucleotide_conversion_integration_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/adaptation/char_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/adaptation/uint_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/alphabet_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/custom_alphabet_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/cigar/debug_stream_cigar_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/cigar/cigar_op_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/cigar/cigar_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/alphabet_cereal_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alphabet/custom_alphabet4_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/test/expect_range_eq_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/test/tmp_filename_test.cpp
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Examining data/seqan3-3.0.2+ds/test/unit/test/pretty_printing_test.cpp
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Examining data/seqan3-3.0.2+ds/test/unit/alignment/configuration/align_config_gap_cost_affine_test.cpp
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Examining data/seqan3-3.0.2+ds/test/unit/alignment/exception_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/aligned_sequence_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/matrix/alignment_coordinate_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/matrix/detail/aligned_sequence_builder_test.cpp
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Examining data/seqan3-3.0.2+ds/test/unit/alignment/matrix/detail/simulated_alignment_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/matrix/detail/trace_iterator_banded_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/matrix/detail/score_matrix_single_column_simd_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/matrix/detail/affine_cell_proxy_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/matrix/detail/score_matrix_single_column_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/matrix/detail/two_dimensional_matrix_test.cpp
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Examining data/seqan3-3.0.2+ds/test/unit/alignment/matrix/detail/alignment_matrix_base_test_template.hpp
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Examining data/seqan3-3.0.2+ds/test/unit/alignment/matrix/edit_distance_matrix/score_matrix_vertical_score_mask_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/matrix/edit_distance_matrix/score_matrix_unbanded_global_max_errors_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/matrix/edit_distance_matrix/edit_distance_score_matrix.hpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/matrix/edit_distance_matrix/trace_matrix_unbanded_global_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/matrix/edit_distance_matrix/trace_matrix_unbanded_global_max_errors_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/matrix/edit_distance_matrix/score_matrix_unbanded_semi_global_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/matrix/edit_distance_matrix/edit_distance_trace_matrix.hpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/matrix/edit_distance_matrix/score_matrix_unbanded_semi_global_max_errors_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/matrix/edit_distance_matrix/score_matrix_unbanded_global_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/matrix/edit_distance_matrix/trace_matrix_unbanded_semi_global_max_errors_test.cpp
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Examining data/seqan3-3.0.2+ds/test/unit/alignment/matrix/debug_matrix_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/matrix/debug_stream_trace_directions_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/detail/type_traits_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/alignment_configurator_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/global_affine_unbanded_collection_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/policy/affine_gap_init_policy_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/policy/affine_gap_policy_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/edit_distance/semi_global_edit_distance_max_errors_unbanded_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/edit_distance/global_edit_distance_max_errors_unbanded_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/edit_distance/global_edit_distance_unbanded_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/edit_distance/semi_global_edit_distance_unbanded_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/edit_distance/proxy_reference_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/pairwise_alignment_single_callback_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/global_affine_banded_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/global_affine_unbanded_callback_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/pairwise_alignment_single_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/fixture/semi_global_affine_unbanded.hpp
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Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/fixture/local_affine_banded.hpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/fixture/semi_global_edit_distance_max_errors_unbanded.hpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/fixture/local_affine_unbanded.hpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/fixture/global_edit_distance_max_errors_unbanded.hpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/fixture/semi_global_affine_banded.hpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/fixture/global_affine_banded.hpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/fixture/semi_global_edit_distance_unbanded.hpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/fixture/global_affine_unbanded.hpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/fixture/global_edit_distance_unbanded.hpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/align_pairwise_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/global_affine_unbanded_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/global_affine_unbanded_collection_callback_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/pairwise_alignment_collection_callback_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/global_affine_unbanded_collection_simd_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/semi_global_affine_banded_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/local_affine_unbanded_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/semi_global_affine_unbanded_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/edit_distance_unbanded_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/pairwise_alignment_collection_test_template.hpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/alignment_result_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/local_affine_banded_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/alignment_result_debug_stream_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/pairwise/align_result_selector_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/band/static_band_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/aligned_sequence_test.cpp
Examining data/seqan3-3.0.2+ds/test/unit/alignment/debug_stream_aligned_sequence_test.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/core/char_operations/char_predicate_is_in_interval.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/core/char_operations/char_predicate_is_in_alphabet.cpp
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Examining data/seqan3-3.0.2+ds/test/snippet/core/char_operations/char_predicate.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/core/char_operations/char_predicate_is_operator.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/core/tuple_utility.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/core/algorithm/configuration_get.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/core/algorithm/configuration_get_or.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/core/algorithm/configuration_setup.cpp
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Examining data/seqan3-3.0.2+ds/test/snippet/core/algorithm/configuration_compatibility.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/core/detail/most_significant_bit_set.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/core/detail/ceil_log2.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/core/detail/count_leading_zeros.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/core/detail/for_each_in_pack.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/core/detail/strong_type_error_window.cpp
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Examining data/seqan3-3.0.2+ds/test/snippet/core/detail/strong_type_usage.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/core/detail/for_each_in_type_list.cpp
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Examining data/seqan3-3.0.2+ds/test/snippet/core/detail/all_of_in_pack.cpp
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Examining data/seqan3-3.0.2+ds/test/snippet/core/type_list/list_traits_find_if.cpp
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Examining data/seqan3-3.0.2+ds/test/snippet/core/simd/fill.cpp
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Examining data/seqan3-3.0.2+ds/test/snippet/std/view/subrange.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/search/dynamic_hit_configuration_example.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/search/bi_fm_index_cursor_cycle.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/search/configuration_on_result.cpp
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Examining data/seqan3-3.0.2+ds/test/snippet/search/kmer_index/shape.cpp
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Examining data/seqan3-3.0.2+ds/test/snippet/range/container/dynamic_bitset_flip_all.cpp
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Examining data/seqan3-3.0.2+ds/test/snippet/argument_parser/validators_input_file.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/argument_parser/custom_argument_parsing_enumeration.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/argument_parser/validators_2.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/argument_parser/custom_enumeration.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/argument_parser/validators_1.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/argument_parser/validators_output_file_ext_from_file.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/argument_parser/auxiliary.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/argument_parser/validators_3.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/argument_parser/validators_output_directory.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/argument_parser/argument_parser_2.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/argument_parser/argument_parser_3.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/gap/gapped.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/gap/gap.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/aminoacid/aa20_construction.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/aminoacid/enable_aminoacid.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/aminoacid/aa27_char_literal.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/aminoacid/aa27_literal.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/aminoacid/aa20_literal.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/aminoacid/aa20_char_literal.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/aminoacid/aa10murphy.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/aminoacid/aa10li.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/aminoacid/aa27_construction.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/mask/masked.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/mask/mask.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/composite/alphabet_variant_subtype_construction.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/composite/alphabet_tuple_base_subtype_assignment.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/composite/alphabet_variant_holds_alternative.cpp
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Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/composite/alphabet_tuple_base_value_assignment.cpp
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Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/composite/alphabet_tuple_base_subtype_construction.cpp
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Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/structure/dot_bracket3_char_literal.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/structure/wuss_literal.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/structure/structured_rna.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/structure/dot_bracket3_literal.cpp
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Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/structure/wuss_is_pair_open.cpp
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Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/structure/dssp9_literal.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/structure/dssp9_char_literal.cpp
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Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/structure/wuss_general.cpp
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Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/nucleotide/dna5.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/assign_rank_to.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/all_ambiguous.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/cigar/cigar.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/cigar/cigar_get_index.cpp
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Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/cigar/cigar_value_construction.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/cigar/cigar_op.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/cigar/cigar_value_assignment.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/to_rank.cpp
Examining data/seqan3-3.0.2+ds/test/snippet/alphabet/all_nonambiguous.cpp
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Examining data/seqan3-3.0.2+ds/test/snippet/alignment/pairwise/alignment_configurator.cpp
Examining data/seqan3-3.0.2+ds/test/performance/core/char_operations/char_predicate_benchmark.cpp
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Examining data/seqan3-3.0.2+ds/test/performance/range/gap_decorator_helper.hpp
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Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/sorted_int_stack.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/wt_hutu.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/k2_treap.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/construct_lcp_helper.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/wt_rlmn.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/wt_huff.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/k2_treap_algorithm.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/lcp_support_tree.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector_mapper.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/hyb_vector.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/vlc_vector.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/lcp_vlc.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/construct_sa.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/sd_vector.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/wt_blcd.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/cereal.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/select_support_scan.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_gamma.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/csa_sampling_strategy.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/lcp_support_sada.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/memory_management.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/lcp_dac.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/k2_tree_helper.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/k2_treap_helper.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/dac_vector.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/bp_support_sada.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/bp_support.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/k2_tree.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/lcp_byte.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/wt_gmr.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/rank_support.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/rmq_support.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/lcp_bitcompressed.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/select_support.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/sdsl_concepts.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/csa_wt.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/suffix_trees.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/wt_helper.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/structure_tree.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/io.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/wt_pc.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/vectors.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector_buffer.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/bit_vectors.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/lcp_support_tree2.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/lcp.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/divsufsort.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/enc_vector.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/construct_bwt.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/suffix_array_helper.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/construct_lcp.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_comma.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/rank_support_scan.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/rmq_succinct_sct.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/platform.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/construct_isa.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/lcp_wt.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/suffix_array_algorithm.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/memory_tracking.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/bit_vector_il.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/fast_cache.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/range-minimum-queries.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/hugepages.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/isa_access.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/node_iterator.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/int-vector-entry.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/c++11-initializer-list.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/memory-visualization.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/fm-rmq-index.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/store_to_file.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/int-vector-buffer-iterator.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/sd_vector_benchmark.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/text-statistics.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/louds-tree.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/wt_ap.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/cst-node-child-iterator.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/k2_treap_in_mem.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/standalone_lcp.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/sa-int-construct-from-file.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/int-vector-mapper.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/uint64-array2int_vector.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/sa-construct-space-efficient.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/storage-visualization.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/cst-bfs-iterator.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/int-vector-buffer.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/write_structure.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/bit-vector.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/fm-index.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/intersect.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/print_wt.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/mem-vis.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/construct-in-memory.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/csa-alphabet-strategy.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/expl-22.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/rmq-example.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/expl-21.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/expl-19.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/cst-traversal.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/use-a-wavelet-tree.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/expl-18.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/expl-10.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/expl-01.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/document_listing/doc_list_index.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/expl-14.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/expl-03.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/expl-12.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/expl-15.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/expl-09.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/expl-02.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/expl-25.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/expl-13.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/csx-printf.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/expl-05.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/expl-20.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/cst-search.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/expl-04.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/expl-11.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/expl-17.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/expl-16.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/expl-08.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/expl-06.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/int-vector-tutorial.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/expl-07.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/expl-23.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/expl-24.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/expl-26.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/coder_test.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/k2_tree_test.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/wt_byte_test.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/inv_perm_support_test.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/int_vector_buffer_test.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/wt_int_test.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/search_bidirectional_test.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/bits_test.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/select_support_test.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/sorted_int_stack_test.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/sa_construct_test.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/bit_vector_test.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/bit_vector_generator.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/divsufsort_test.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/rank_support_test.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/cst_byte_test.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/rmq_test.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/lcp_construct_test.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/int_vector_test.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/sorted_stack_support_test.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/int_vector_generator.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/cst_helper.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/common.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/sd_vector_test.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/csa_byte_test.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/int_vector_mapper_test.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/replace_int_vector_value.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/k2_treap_test.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/csa_int_test.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/cst_int_test.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/nn_dict_dynamic_test.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/k2_trees/src/k2_time_and_space.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/k2_trees/src/gen_k2t.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/suffix_trees/src/depth_stats.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/suffix_trees/src/build_cst.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/suffix_trees/src/time_and_space_cst.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/document_retrieval/src/doc_list_index_sort.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/document_retrieval/src/doc_list_index_qprobing.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/document_retrieval/src/doc_list_index_greedy.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/document_retrieval/src/build_idx.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/document_retrieval/src/size_of_idx.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/document_retrieval/src/word_pat2char_pat.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/document_retrieval/src/doc_list_index_sada.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/document_retrieval/src/gen_pattern.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/document_retrieval/src/query_idx.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/document_retrieval/src/doc_list_index.hpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/lcp/src/create_sa_bwt.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/lcp/src/create_lcp.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_locate/src/info.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_locate/src/interface.h
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_locate/src/build_index_sdsl.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_locate/src/run_queries_sdsl.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_locate/src/pattern_random.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/self_delimiting_codes/src/sdc_benchmark.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_extract/src/info.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_extract/src/interface.h
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_extract/src/genintervals.c
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_extract/src/build_index_sdsl.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_extract/src/run_queries_sdsl.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/wavelet_trees/src/gen_bwt.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/wavelet_trees/src/wt_time_and_space.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_count/src/info.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_count/src/genpatterns.c
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_count/src/interface.h
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_count/src/build_index_sdsl.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_count/src/run_queries_sdsl.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/rrr_vector/src/generate_rnd_bitvector.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/rrr_vector/src/rrr_time_and_space.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/CMakeModules/MODETI.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/CMakeModules/SSE42.cpp
Examining data/seqan3-3.0.2+ds/submodules/sdsl-lite/CMakeModules/BMI2.cpp

FINAL RESULTS:

data/seqan3-3.0.2+ds/include/seqan3/argument_parser/detail/version_check.hpp:45:9:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
    if (system(command.c_str()))
data/seqan3-3.0.2+ds/include/seqan3/argument_parser/detail/version_check.hpp:456:14:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
        if (!system("/usr/bin/env -i wget --version > /dev/null 2>&1"))
data/seqan3-3.0.2+ds/include/seqan3/argument_parser/detail/version_check.hpp:458:19:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
        else if (!system("/usr/bin/env -i curl --version > /dev/null 2>&1"))
data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_count/src/run_queries_sdsl.cpp:225:13:  [4] (buffer) fscanf:
  The scanf() family's %s operation, without a limit specification, permits
  buffer overflows (CWE-120, CWE-20). Specify a limit to %s, or use a
  different input function.
    error = fscanf(stdin, "# number=%lu length=%lu file=%s forbidden=", numpatt,
data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_extract/src/run_queries_sdsl.cpp:221:13:  [4] (buffer) fscanf:
  The scanf() family's %s operation, without a limit specification, permits
  buffer overflows (CWE-120, CWE-20). Specify a limit to %s, or use a
  different input function.
    error = fscanf(stdin, "# number=%lu length=%lu file=%s forbidden=", numpatt,
data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_extract/src/run_queries_sdsl.cpp:251:13:  [4] (buffer) fscanf:
  The scanf() family's %s operation, without a limit specification, permits
  buffer overflows (CWE-120, CWE-20). Specify a limit to %s, or use a
  different input function.
    error = fscanf(stdin, "# number=%lu length=%lu file=%s\n", &num_pos, &numchars, orig_file);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_locate/src/run_queries_sdsl.cpp:224:13:  [4] (buffer) fscanf:
  The scanf() family's %s operation, without a limit specification, permits
  buffer overflows (CWE-120, CWE-20). Specify a limit to %s, or use a
  different input function.
    error = fscanf(stdin, "# number=%lu length=%lu file=%s forbidden=", numpatt,
data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_locate/src/run_queries_sdsl.cpp:254:13:  [4] (buffer) fscanf:
  The scanf() family's %s operation, without a limit specification, permits
  buffer overflows (CWE-120, CWE-20). Specify a limit to %s, or use a
  different input function.
    error = fscanf(stdin, "# number=%lu length=%lu file=%s\n", &num_pos, &numchars, orig_file);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector_mapper.hpp:355:3:  [4] (buffer) sprintf:
  Does not check for buffer overflows (CWE-120). Use sprintf_s, snprintf, or
  vsnprintf.
		sprintf(tmp_file_name, "%s/tmp_mapper_file_%" PRIu64 "_XXXXXX.sdsl", dir.c_str(), util::pid());
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/suffix_array_helper.hpp:57:20:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
	static value_type access(const t_csa& csa, size_type i) { return csa.psi[i]; }
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/suffix_array_helper.hpp:65:20:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
	static value_type access(const t_csa& csa, size_type i)
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/suffix_array_helper.hpp:99:54:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
		return traverse_csa_psi_trait<t_csa, t_direction>::access(m_csa, i);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/suffix_array_helper.hpp:122:20:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
	static value_type access(const t_csa& csa, size_type i)
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/suffix_array_helper.hpp:134:20:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
	static value_type access(const t_csa& csa, size_type i)
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/suffix_array_helper.hpp:173:56:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
		return traverse_csa_saisa_trait<t_csa, t_direction>::access(m_csa, i);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/suffix_array_helper.hpp:271:20:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
	static value_type access(const t_csa& csa, size_type i)
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/suffix_array_helper.hpp:284:20:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
	static value_type access(const t_csa& csa, size_type i)
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/suffix_array_helper.hpp:322:54:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
		return traverse_csa_wt_traits<t_csa, t_direction>::access(m_csa, i);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/bit_vector_test.cpp:82:29:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
TYPED_TEST(bit_vector_test, access)
data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/int_vector_test.cpp:192:25:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
TEST_F(int_vector_test, access)
data/seqan3-3.0.2+ds/test/unit/alignment/matrix/alignment_coordinate_test.cpp:74:40:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
TEST(advanceable_alignment_coordinate, access)
data/seqan3-3.0.2+ds/test/unit/range/container/dynamic_bitset_test.cpp:335:22:  [4] (race) access:
  This usually indicates a security flaw. If an attacker can change anything
  along the path between the call to access() and the file's actual use
  (e.g., by moving files), the attacker can exploit the race condition
  (CWE-362/CWE-367!). Set up the correct permissions (e.g., using setuid())
  and try to open the file directly.
TEST(dynamic_bitset, access)
data/seqan3-3.0.2+ds/test/unit/test/tmp_filename_test.cpp:73:10:  [4] (shell) system:
  This causes a new program to execute and is difficult to use safely
  (CWE-78). try using a library call that implements the same functionality
  if available.
    if (!system("man putenv > /dev/null 2>&1"))
data/seqan3-3.0.2+ds/include/seqan3/argument_parser/detail/version_check.hpp:234:32:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
        tmp_path = std::string{getenv(home_env_name)};
data/seqan3-3.0.2+ds/include/seqan3/argument_parser/detail/version_check.hpp:299:18:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
        if (std::getenv("SEQAN3_NO_VERSION_CHECK") != nullptr) // environment variable was set
data/seqan3-3.0.2+ds/include/seqan3/range/container/dynamic_bitset.hpp:1767:20:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
                is.setstate(std::ios_base::failbit); // LCOV_EXCL_LINE
data/seqan3-3.0.2+ds/include/seqan3/range/container/small_string.hpp:391:20:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
                is.setstate(std::ios_base::failbit);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/rrr_vector/src/generate_rnd_bitvector.cpp:39:5:  [3] (random) srand:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    srand(17);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector_mapper.hpp:350:14:  [3] (tmpfile) GetTempFileName:
  Temporary file race condition in certain cases (e.g., if run as SYSTEM in
  many versions of Windows) (CWE-377).
		auto ret = GetTempFileName(dir.c_str(), "tmp_mapper_file_", 0, tmp_file_name);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/sfstream.hpp:56:19:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
            this->setstate(std::ios_base::failbit);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/sfstream.hpp:88:25:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
        if (fail) this->setstate(std::ios::failbit);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/sfstream.hpp:113:27:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
                    this->setstate(err);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/sfstream.hpp:118:23:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
                this->setstate(err);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/sfstream.hpp:138:27:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
                    this->setstate(err);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/sfstream.hpp:143:23:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
                this->setstate(err);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/sfstream.hpp:190:19:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
            this->setstate(std::ios_base::failbit);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/sfstream.hpp:222:25:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
        if (fail) this->setstate(std::ios::failbit);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/sfstream.hpp:252:23:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
                this->setstate(err);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/sfstream.hpp:276:23:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
                this->setstate(err);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/sfstream.hpp:300:23:  [3] (random) setstate:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
                this->setstate(err);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/bit_vector_generator.cpp:52:9:  [3] (random) srand:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
        srand(4711);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/int_vector_generator.cpp:43:9:  [3] (random) srand:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
        srand(seed);
data/seqan3-3.0.2+ds/test/performance/core/bit_manipulation_benchmark.cpp:16:10:  [3] (random) srand:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    std::srand(0);
data/seqan3-3.0.2+ds/test/performance/core/bit_manipulation_benchmark.cpp:36:10:  [3] (random) srand:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    std::srand(0);
data/seqan3-3.0.2+ds/test/performance/core/bit_manipulation_benchmark.cpp:47:10:  [3] (random) srand:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    std::srand(0);
data/seqan3-3.0.2+ds/test/performance/core/bit_manipulation_benchmark.cpp:58:10:  [3] (random) srand:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    std::srand(0);
data/seqan3-3.0.2+ds/test/snippet/range/views/async_input_buffer.cpp:40:10:  [3] (random) srand:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    std::srand(std::time(nullptr));
data/seqan3-3.0.2+ds/test/unit/argument_parser/detail/version_check_test.hpp:110:31:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
        if (char * env = std::getenv("SEQAN3_NO_VERSION_CHECK"))
data/seqan3-3.0.2+ds/test/unit/argument_parser/detail/version_check_test.hpp:284:27:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
    if (char * env = std::getenv("SEQAN3_NO_VERSION_CHECK"))
data/seqan3-3.0.2+ds/test/unit/argument_parser/detail/version_check_test.hpp:340:27:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
    if (char * env = std::getenv("SEQAN3_NO_VERSION_CHECK"))
data/seqan3-3.0.2+ds/test/unit/argument_parser/detail/version_check_test.hpp:457:27:  [3] (buffer) getenv:
  Environment variables are untrustable input if they can be set by an
  attacker. They can have any content and length, and the same variable can
  be set more than once (CWE-807, CWE-20). Check environment variables
  carefully before using them.
    if (char * env = std::getenv("SEQAN3_NO_VERSION_CHECK"))
data/seqan3-3.0.2+ds/test/unit/contrib/parallel/buffer_queue_parallel_test.cpp:122:25:  [3] (random) random:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    std::vector<size_t> random;
data/seqan3-3.0.2+ds/test/unit/contrib/parallel/buffer_queue_parallel_test.cpp:127:5:  [3] (random) random:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    random.resize(100000);
data/seqan3-3.0.2+ds/test/unit/contrib/parallel/buffer_queue_parallel_test.cpp:128:28:  [3] (random) random:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
    for (size_t i = 0; i < random.size(); ++i)
data/seqan3-3.0.2+ds/test/unit/contrib/parallel/buffer_queue_parallel_test.cpp:130:9:  [3] (random) random:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
        random[i] = rng();
data/seqan3-3.0.2+ds/test/unit/contrib/parallel/buffer_queue_parallel_test.cpp:131:20:  [3] (random) random:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
        chk_sum ^= random[i];
data/seqan3-3.0.2+ds/test/unit/contrib/parallel/buffer_queue_parallel_test.cpp:175:40:  [3] (random) random:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
                size_t offset = tid * (random.size() / writer_count);
data/seqan3-3.0.2+ds/test/unit/contrib/parallel/buffer_queue_parallel_test.cpp:176:79:  [3] (random) random:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
                size_t offset_end = std::min(static_cast<size_t>((tid + 1) * (random.size() / writer_count)),
data/seqan3-3.0.2+ds/test/unit/contrib/parallel/buffer_queue_parallel_test.cpp:177:46:  [3] (random) random:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
                                             random.size());
data/seqan3-3.0.2+ds/test/unit/contrib/parallel/buffer_queue_parallel_test.cpp:182:36:  [3] (random) random:
  This function is not sufficiently random for security-related functions
  such as key and nonce creation (CWE-327). Use a more secure technique for
  acquiring random values.
                        queue.push(random[pos]);
data/seqan3-3.0.2+ds/doc/howto/write_an_alphabet/dna2_alphabet.cpp:38:9:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
        char const rank_to_char[2] {'S', 'W'};
data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/trace_directions.hpp:76:12:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    static char const * unicode[32]{ "↺",   "↖",   "↑",   "↖↑",   "⇡",   "↖⇡",   "↑⇡",   "↖↑⇡",
data/seqan3-3.0.2+ds/include/seqan3/alignment/matrix/trace_directions.hpp:81:12:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    static char const * csv[32]{ "N",   "D",   "U",   "DU",   "u",   "Du",   "Uu",   "DUu",
data/seqan3-3.0.2+ds/include/seqan3/contrib/charconv/charconv.cpp:18:18:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
static constexpr char cDigitsLut[200] = {
data/seqan3-3.0.2+ds/include/seqan3/contrib/charconv/charconv.cpp:46:5:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
    memcpy(buffer, &cDigitsLut[(i)*2], 2);
data/seqan3-3.0.2+ds/include/seqan3/contrib/stream/bgzf_ostream.hpp:76:9:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
        char    buffer[DefaultPageSize<detail::bgzf_compression>::MAX_BLOCK_SIZE];
data/seqan3-3.0.2+ds/include/seqan3/io/alignment_file/input.hpp:849:73:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
        static_cast<std::basic_ifstream<char> *>(primary_stream.get())->open(filename,
data/seqan3-3.0.2+ds/include/seqan3/io/alignment_file/output.hpp:275:73:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
        static_cast<std::basic_ofstream<char> *>(primary_stream.get())->open(filename,
data/seqan3-3.0.2+ds/include/seqan3/io/alignment_file/sam_tag_dictionary.hpp:35:5:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    char constexpr sam_tag_type_char[11]       = {'A',  'i',  'f',  'Z',  'B', 'B', 'B', 'B', 'B', 'B', 'B'};
data/seqan3-3.0.2+ds/include/seqan3/io/alignment_file/sam_tag_dictionary.hpp:37:5:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    char constexpr sam_tag_type_char_extra[11] = {'\0', '\0', '\0', '\0', 'c', 'C', 's', 'S', 'i', 'I', 'f'};
data/seqan3-3.0.2+ds/include/seqan3/io/sequence_file/format_genbank.hpp:194:26:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
        [[maybe_unused]] char buffer[50];
data/seqan3-3.0.2+ds/include/seqan3/io/sequence_file/input.hpp:441:73:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
        static_cast<std::basic_ifstream<char> *>(primary_stream.get())->open(filename,
data/seqan3-3.0.2+ds/include/seqan3/io/sequence_file/output.hpp:262:73:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
        static_cast<std::basic_ofstream<char> *>(primary_stream.get())->open(filename,
data/seqan3-3.0.2+ds/include/seqan3/io/structure_file/input.hpp:611:73:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
        static_cast<std::basic_ifstream<char> *>(primary_stream.get())->open(filename,
data/seqan3-3.0.2+ds/include/seqan3/io/structure_file/output.hpp:264:73:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
        static_cast<std::basic_ofstream<char> *>(primary_stream.get())->open(filename,
data/seqan3-3.0.2+ds/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:531:14:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
        std::memcpy(&bloom_filter_indices, &ibf_ptr->hash_seeds, sizeof(size_t) * ibf_ptr->hash_funs);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/document_retrieval/src/query_idx.cpp:13:1:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
char   buffer[buf_size];
data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/document_retrieval/src/word_pat2char_pat.cpp:12:1:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
char   buffer[buf_size];
data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_count/src/genpatterns.c:126:9:  [2] (integer) atoi:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
    m = atoi(argv[2]);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_count/src/genpatterns.c:134:9:  [2] (integer) atoi:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
    J = atoi(argv[3]);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_count/src/genpatterns.c:146:13:  [2] (misc) fopen:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
    ifile = fopen(argv[1], "r");
data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_count/src/genpatterns.c:167:13:  [2] (misc) fopen:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
    ofile = fopen(argv[4], "w");
data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_extract/src/genintervals.c:66:9:  [2] (integer) atoi:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
    m = atoi(argv[2]);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_extract/src/genintervals.c:73:9:  [2] (integer) atoi:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
    J = atoi(argv[3]);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_extract/src/genintervals.c:79:13:  [2] (misc) fopen:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
    ifile = fopen(argv[1],"r");
data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_extract/src/genintervals.c:100:13:  [2] (misc) fopen:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
    ofile = fopen(argv[4],"w");
data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/k2_trees/src/gen_k2t.cpp:63:5:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
	fs.open(argv[3]);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/rrr_vector/src/generate_rnd_bitvector.cpp:36:30:  [2] (integer) atoi:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
    const uint64_t density = atoi(argv[2]);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/rrr_vector/src/rrr_time_and_space.cpp:63:22:  [2] (integer) atoi:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
        uint16_t k = atoi(argv[2]);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/fm-index.cpp:26:25:  [2] (integer) atoi:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
        max_locations = atoi(argv[2]);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/fm-index.cpp:29:24:  [2] (integer) atoi:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
        post_context = atoi(argv[3]);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/fm-index.cpp:32:23:  [2] (integer) atoi:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
        pre_context = atoi(argv[4]);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/fm-rmq-index.cpp:52:25:  [2] (integer) atoi:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
        max_locations = atoi(argv[2]);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/fm-rmq-index.cpp:55:24:  [2] (integer) atoi:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
        post_context = atoi(argv[3]);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/examples/fm-rmq-index.cpp:58:23:  [2] (integer) atoi:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
        pre_context = atoi(argv[4]);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/construct_lcp.hpp:341:11:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
	unsigned char alphabet[257] = {0};
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/construct_lcp.hpp:715:11:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
	unsigned char alphabet[257] = {0};
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/construct_lcp_helper.hpp:127:30:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
                    m_stream.open(m_file_name,
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/construct_lcp_helper.hpp:150:17:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
                memcpy(m_read_buf, m_write_buf, m_widx + 1);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector.hpp:1474:7:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
		if (memcpy(m_data, v.data(), bit_data_size() << 3) == nullptr) {
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector_buffer.hpp:142:11:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
		m_ofile.open(m_filename, mode | std::ios::out | std::ios::binary);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector_buffer.hpp:144:11:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
		m_ifile.open(m_filename, std::ios::in | std::ios::binary);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector_buffer.hpp:174:11:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
		m_ifile.open(m_filename, std::ios::in | std::ios::binary);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector_buffer.hpp:175:11:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
		m_ofile.open(m_filename, std::ios::in | std::ios::out | std::ios::binary);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector_buffer.hpp:198:11:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
		m_ifile.open(m_filename, std::ios::in | std::ios::binary);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector_buffer.hpp:199:11:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
		m_ofile.open(m_filename, std::ios::in | std::ios::out | std::ios::binary);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector_buffer.hpp:274:11:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
		m_ofile.open(m_filename, std::ios::out | std::ios::binary);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector_buffer.hpp:276:11:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
		m_ifile.open(m_filename, std::ios::in | std::ios::binary);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector_mapper.hpp:348:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
		char tmp_file_name[1024] = {0};
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector_mapper.hpp:369:3:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
		char tmp_dir_name[1024] = {0};
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/memory_management.hpp:624:13:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
            memcpy(newptr, ptr, size);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/memory_management.hpp:801:19:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
			return ram_fs::open(filename);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/memory_management.hpp:812:11:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
			return open(filename.c_str(), O_RDONLY);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/memory_management.hpp:814:11:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
			return open(filename.c_str(), O_RDWR);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/ram_filebuf.hpp:40:21:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
    std::streambuf* open(const std::string name, std::ios_base::openmode mode)
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/ram_fs.hpp:79:20:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
        inline int open(const std::string& name) {
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/sfstream.hpp:36:9:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
        open(file, mode);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/sfstream.hpp:40:15:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
	buf_ptr_type open(const std::string& file, std::ios_base::openmode mode = std::ios_base::out)
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/sfstream.hpp:48:53:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
            success		= ((ram_filebuf*)m_streambuf)->open(m_file, mode | std::ios_base::out);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/sfstream.hpp:51:54:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
            success		= ((std::filebuf*)m_streambuf)->open(m_file, mode | std::ios_base::out);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/sfstream.hpp:170:9:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
        open(file, mode);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/sfstream.hpp:174:15:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
	buf_ptr_type open(const std::string& file, std::ios_base::openmode mode = std::ios_base::in)
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/sfstream.hpp:182:53:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
            success		= ((ram_filebuf*)m_streambuf)->open(m_file, mode | std::ios_base::in);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/sfstream.hpp:185:54:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
            success		= ((std::filebuf*)m_streambuf)->open(m_file, mode | std::ios_base::in);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/util.hpp:205:2:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
	char  file_name[_MAX_FNAME] = {0};
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/util.hpp:230:2:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
	char  dir_name[_MAX_DIR] = {0};
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/util.hpp:231:2:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
	char  drive[_MAX_DRIVE]  = {0};
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/util.hpp:270:2:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
	char   buf[4096];
data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/common.hpp:48:20:  [2] (integer) atoi:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
    num_bytes    = atoi(argv[2]);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/replace_int_vector_value.cpp:17:18:  [2] (integer) atoi:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
    uint64_t x = atoi(argv[2]);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/replace_int_vector_value.cpp:18:18:  [2] (integer) atoi:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
    uint64_t y = atoi(argv[3]);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/csx-printf.cpp:12:1:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
char line[BUF_SIZE];
data/seqan3-3.0.2+ds/submodules/sdsl-lite/tutorial/document_listing/doc_list_index.cpp:43:5:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    char   buffer[64];
data/seqan3-3.0.2+ds/test/performance/example/example_benchmark.cpp:28:9:  [2] (buffer) memcpy:
  Does not check for buffer overflows when copying to destination (CWE-120).
  Make sure destination can always hold the source data.
        memcpy(dst, src, size);
data/seqan3-3.0.2+ds/test/performance/io/stream_output_benchmark.cpp:144:5:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
    open(ogzf, os, tag);
data/seqan3-3.0.2+ds/test/performance/std/charconv_from_chars_benchmark.cpp:81:15:  [2] (integer) atol:
  Unless checked, the resulting number can exceed the expected range
  (CWE-190). If source untrusted, check both minimum and maximum, even if the
  input had no minus sign (large numbers can roll over into negative number;
  consider saving to an unsigned value if that is intended).
        val = atol(str);
data/seqan3-3.0.2+ds/test/performance/std/charconv_to_chars_benchmark.cpp:25:5:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    char buffer[10];
data/seqan3-3.0.2+ds/test/unit/argument_parser/detail/format_man_test.cpp:24:11:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    const char * argv[4] = {"./format_man_test --version-check 0", "--export-help", "man"};
data/seqan3-3.0.2+ds/test/unit/argument_parser/detail/version_check_test.hpp:210:11:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    const char * argv[3] = {app_name.c_str(), OPTION_VERSION_CHECK, OPTION_ON};
data/seqan3-3.0.2+ds/test/unit/argument_parser/detail/version_check_test.hpp:234:11:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    const char * argv[2] = {app_name.c_str(), "-f"};
data/seqan3-3.0.2+ds/test/unit/argument_parser/detail/version_check_test.hpp:264:12:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
     const char * argv[2] = {app_name.c_str(), "-f"};
data/seqan3-3.0.2+ds/test/unit/argument_parser/detail/version_check_test.hpp:289:11:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    const char * argv[2] = {app_name.c_str(), "-f"};
data/seqan3-3.0.2+ds/test/unit/argument_parser/detail/version_check_test.hpp:323:11:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    const char * argv[3] = {app_name.c_str(), OPTION_VERSION_CHECK, OPTION_OFF};
data/seqan3-3.0.2+ds/test/unit/argument_parser/detail/version_check_test.hpp:337:11:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    const char * argv2[4] = {app_name.c_str(), "-h", OPTION_VERSION_CHECK, OPTION_OFF};
data/seqan3-3.0.2+ds/test/unit/argument_parser/detail/version_check_test.hpp:368:11:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    const char * argv[3] = {app_name.c_str(), OPTION_VERSION_CHECK, OPTION_ON};
data/seqan3-3.0.2+ds/test/unit/argument_parser/detail/version_check_test.hpp:390:11:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    const char * argv[3] = {app_name.c_str(), OPTION_VERSION_CHECK, OPTION_ON};
data/seqan3-3.0.2+ds/test/unit/argument_parser/detail/version_check_test.hpp:411:11:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    const char * argv[3] = {app_name.c_str(), OPTION_VERSION_CHECK, OPTION_ON};
data/seqan3-3.0.2+ds/test/unit/argument_parser/detail/version_check_test.hpp:435:11:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    const char * argv[3] = {app_name.c_str(), OPTION_VERSION_CHECK, OPTION_ON};
data/seqan3-3.0.2+ds/test/unit/argument_parser/detail/version_check_test.hpp:463:11:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    const char * argv[3] = {app_name.c_str(), OPTION_VERSION_CHECK, OPTION_ON};
data/seqan3-3.0.2+ds/test/unit/argument_parser/detail/version_check_test.hpp:500:11:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    const char * argv[2] = {app_name.c_str(), "-f"}; // no explicit version check option
data/seqan3-3.0.2+ds/test/unit/argument_parser/detail/version_check_test.hpp:519:11:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    const char * argv[2] = {app_name.c_str(), "-f"}; // no explicit version check option
data/seqan3-3.0.2+ds/test/unit/argument_parser/detail/version_check_test.hpp:546:11:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    const char * argv[2] = {app_name.c_str(), "-f"}; // no explicit version check option
data/seqan3-3.0.2+ds/test/unit/argument_parser/format_parse_validators_test.cpp:432:12:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
    stream.open(file, std::ios::in);
data/seqan3-3.0.2+ds/test/unit/argument_parser/format_parse_validators_test.cpp:443:16:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
        stream.open(test_file, std::ios::out);
data/seqan3-3.0.2+ds/test/unit/argument_parser/format_parse_validators_test.cpp:449:16:  [2] (misc) open:
  Check when opening files - can an attacker redirect it (via symlinks),
  force the opening of special file type (e.g., device files), move things
  around to create a race condition, control its ancestors, or change its
  contents? (CWE-362).
        stream.open(file, std::ios::out);
data/seqan3-3.0.2+ds/test/unit/io/stream/fast_streambuf_iterator_test.cpp:124:5:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
    char buf[40];
data/seqan3-3.0.2+ds/test/unit/io/stream/fast_streambuf_iterator_test.cpp:174:9:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
        char buf[400];
data/seqan3-3.0.2+ds/test/unit/io/stream/fast_streambuf_iterator_test.cpp:188:9:  [2] (buffer) char:
  Statically-sized arrays can be improperly restricted, leading to potential
  overflows or other issues (CWE-119!/CWE-120). Perform bounds checking, use
  functions that limit length, or ensure that the size is larger than the
  maximum possible length.
        char buf[100];
data/seqan3-3.0.2+ds/include/seqan3/argument_parser/validators.hpp:384:33:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
            return std::ranges::equal(ext, drop_less_ext, [] (char const chr1, char const chr2)
data/seqan3-3.0.2+ds/include/seqan3/contrib/stream/bgzf_istream.hpp:193:55:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
                        streamBuf->serializer.istream.read(
data/seqan3-3.0.2+ds/include/seqan3/contrib/stream/bgzf_istream.hpp:219:55:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
                        streamBuf->serializer.istream.read(
data/seqan3-3.0.2+ds/include/seqan3/contrib/stream/bz2_istream.hpp:150:15:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
    m_istream.read(
data/seqan3-3.0.2+ds/include/seqan3/contrib/stream/gz_istream.hpp:217:15:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
    m_istream.read((char_type *)(&(m_input_buffer[0])),
data/seqan3-3.0.2+ds/include/seqan3/io/alignment_file/detail.hpp:40:29:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
        return std::ranges::equal(rng1, rng2);
data/seqan3-3.0.2+ds/include/seqan3/io/alignment_file/format_bam.hpp:330:27:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
        if (!std::ranges::equal(stream_view | views::take_exactly_or_throw(4), std::string_view{"BAM\1"}))
data/seqan3-3.0.2+ds/include/seqan3/io/detail/misc.hpp:83:34:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
                if (std::ranges::equal(ext, extension))
data/seqan3-3.0.2+ds/include/seqan3/io/sequence_file/format_genbank.hpp:110:28:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
        if (!(std::ranges::equal(stream_view | views::take_until_or_throw(is_cntrl || is_blank), std::string{"LOCUS"})))
data/seqan3-3.0.2+ds/include/seqan3/range/container/small_vector.hpp:874:29:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
        return std::ranges::equal(lhs, rhs);
data/seqan3-3.0.2+ds/include/seqan3/range/decorator/gap_decorator.hpp:422:26:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
            std::ranges::equal(lhs.ungapped_view, rhs.ungapped_view))
data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_count/src/genpatterns.c:47:11:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
    len = strlen(forbid);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_count/src/run_queries_sdsl.cpp:237:17:  [1] (buffer) fgetc:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
    while ((c = fgetc(stdin)) != 0) {
data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_extract/src/run_queries_sdsl.cpp:233:17:  [1] (buffer) fgetc:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
    while ((c = fgetc(stdin)) != 0) {
data/seqan3-3.0.2+ds/submodules/sdsl-lite/benchmark/indexing_locate/src/run_queries_sdsl.cpp:236:17:  [1] (buffer) fgetc:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
    while ((c = fgetc(stdin)) != 0) {
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp:225:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
	if (n + read <= 64) {
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp:226:15:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
		if (((*d >> read) & bits::lo_set[n]) == bits::lo_set[n]) return n;
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp:228:14:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
		if ((*d >> read) == bits::lo_set[64 - read]) { // all bits are set to 1
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp:228:41:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
		if ((*d >> read) == bits::lo_set[64 - read]) { // all bits are set to 1
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp:229:17:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
			value = 64 - read;
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp:231:15:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
			n -= (64 - read);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp:250:19:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
			w |= (((*d) >> read) << buffered);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp:251:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
			if (read >= buffered) {
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp:253:22:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
				buffered += 64 - read;
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp:294:21:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
					w |= (((*d) >> read) << buffered);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp:295:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
					if (read >= buffered) {
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp:297:24:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
						buffered += 64 - read;
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp:304:22:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
						w |= (((*d) >> read) << buffered);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp:305:11:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
						if (read >= buffered) {
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp:307:25:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
							buffered += 64 - read;
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp:320:21:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
					w |= (((*d) >> read) << buffered);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp:321:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
					if (read >= buffered) {
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp:323:24:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
						buffered += 64 - read;
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp:330:22:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
						w |= (((*d) >> read) << buffered);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp:331:11:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
						if (read >= buffered) {
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp:333:25:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
							buffered += 64 - read;
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp:346:21:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
					w |= (((*d) >> read) << buffered);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp:347:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
					if (read >= buffered) {
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp:349:24:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
						buffered += 64 - read;
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp:356:22:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
						w |= (((*d) >> read) << buffered);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp:357:11:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
						if (read >= buffered) {
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_delta.hpp:359:25:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
							buffered += 64 - read;
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_gamma.hpp:268:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
	if (n + read <= 64) {
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_gamma.hpp:269:15:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
		if (((*d >> read) & bits::lo_set[n]) == bits::lo_set[n]) return n;
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_gamma.hpp:271:14:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
		if ((*d >> read) == bits::lo_set[64 - read]) { // all bits are set to 1
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_gamma.hpp:271:41:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
		if ((*d >> read) == bits::lo_set[64 - read]) { // all bits are set to 1
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_gamma.hpp:272:17:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
			value = 64 - read;
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_gamma.hpp:274:15:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
			n -= (64 - read);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_gamma.hpp:293:19:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
			w |= (((*d) >> read) << buffered);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_gamma.hpp:294:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
			if (read >= buffered) {
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_gamma.hpp:296:22:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
				buffered += 64 - read;
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_gamma.hpp:321:21:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
					w |= (((*d) >> read) << buffered);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_gamma.hpp:322:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
					if (read >= buffered) {
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_gamma.hpp:324:24:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
						buffered += 64 - read;
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_gamma.hpp:331:22:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
						w |= (((*d) >> read) << buffered);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_gamma.hpp:332:11:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
						if (read >= buffered) {
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_gamma.hpp:334:25:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
							buffered += 64 - read;
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_gamma.hpp:347:21:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
					w |= (((*d) >> read) << buffered);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_gamma.hpp:348:10:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
					if (read >= buffered) {
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_gamma.hpp:350:24:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
						buffered += 64 - read;
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_gamma.hpp:357:22:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
						w |= (((*d) >> read) << buffered);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_gamma.hpp:358:11:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
						if (read >= buffered) {
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_elias_gamma.hpp:360:25:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
							buffered += 64 - read;
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_fibonacci.hpp:350:22:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
			w |= (((*data) >> read) << buffered);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_fibonacci.hpp:351:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
			if (read >= buffered) {
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_fibonacci.hpp:353:22:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
				buffered += 64 - read;
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_fibonacci.hpp:392:19:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
			w |= (((*d) >> read) << buffered);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_fibonacci.hpp:393:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
			if (read >= buffered) {
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_fibonacci.hpp:400:22:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
				buffered += 64 - read;
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_fibonacci.hpp:437:40:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
	i				= bits::cnt11(*d & ~bits::lo_set[read], carry);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_fibonacci.hpp:446:75:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
		((w - 1) << 6) + bits::sel11(*(d + w), n - (i - temp), oldcarry) + 65 - read;
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_fibonacci.hpp:449:38:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
		bits_to_decode = bits::sel11(*d >> read, n) + 1;
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_fibonacci.hpp:457:19:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
			w |= (((*d) >> read) << buffered);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_fibonacci.hpp:458:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
			if (read >= buffered) {
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_fibonacci.hpp:460:22:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
				buffered += 64 - read;
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/coder_fibonacci.hpp:461:29:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
				bits_to_decode -= (64 - read);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/construct_lcp_helper.hpp:146:26:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
                m_stream.read((char*)m_read_buf, m_buffer_size);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector.hpp:736:15:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
		return std::equal(begin(), end(), v.begin());
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector.hpp:1833:6:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
		in.read((char*)p, conf::SDSL_BLOCK_SIZE * sizeof(uint64_t));
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector.hpp:1837:5:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
	in.read((char*)p, (bit_data_size() - idx) * sizeof(uint64_t));
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector_buffer.hpp:50:12:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
			m_ifile.read((char*)m_buffer.data(), (m_buffersize * width()) / 8);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector_buffer.hpp:81:11:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
	uint64_t read(const uint64_t idx)
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector_buffer.hpp:351:59:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
		operator uint64_t() const { return m_int_vector_buffer->read(m_idx); }
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector_buffer.hpp:366:38:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
			uint64_t x = m_int_vector_buffer->read(m_idx);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector_buffer.hpp:382:38:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
			uint64_t x = m_int_vector_buffer->read(m_idx);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector_buffer.hpp:398:38:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
			uint64_t w = m_int_vector_buffer->read(m_idx);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector_buffer.hpp:406:38:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
			uint64_t w = m_int_vector_buffer->read(m_idx);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector_io_wrappers.hpp:98:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
				in.read((char*)&w, sizeof(uint8_t));
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector_mapper.hpp:325:15:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
		return std::equal(begin(), end(), v.begin());
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/int_vector_mapper.hpp:362:37:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
		return std::string(tmp_file_name, strlen(tmp_file_name));
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/io.hpp:114:5:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
	in.read((char*)&t, sizeof(t));
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/io.hpp:124:5:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
	in.read(buf, size);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/io.hpp:229:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
				in.read((char*)v.data(), file_size);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/io.hpp:239:9:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
					in.read((char*)buf.data(), block_size);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/io.hpp:242:31:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
					uint8_t* end   = begin + read;
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/io.hpp:284:15:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
	uint64_t n = strlen((const char*)v);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/k2_treap.hpp:176:26:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
                auto v = read<uint32_t,uint32_t,uint32_t>(bufs);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/k2_treap.hpp:179:26:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
                auto v = read<uint64_t,uint64_t,uint64_t>(bufs);
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/k2_treap.hpp:186:45:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
                                            read(std::vector<int_vector_buffer<>*>& bufs)
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/lcp_support_tree2.hpp:288:14:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
		big_lcp_in.read((char*)&y, sizeof(y));
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/memory_management.hpp:362:32:  [1] (buffer) mismatch:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
                auto ps = std::mismatch(ps_str.begin(), ps_str.end(), line.begin());
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/memory_management.hpp:366:32:  [1] (buffer) mismatch:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
                auto pf = std::mismatch(pf_str.begin(), pf_str.end(), line.begin());
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/select_support_mcl.hpp:475:5:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
	in.read((char*)&m_arg_cnt, sizeof(size_type) / sizeof(char));
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/wt_helper.hpp:135:6:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
		in.read((char*)child, 2 * sizeof(child[0]));
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/wt_helper.hpp:335:6:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
		in.read((char*)m_c_to_leaf, fixed_sigma * sizeof(m_c_to_leaf[0]));
data/seqan3-3.0.2+ds/submodules/sdsl-lite/include/sdsl/wt_helper.hpp:336:6:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
		in.read((char*)m_path, fixed_sigma * sizeof(m_path[0]));
data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/int_vector_mapper_test.cpp:59:30:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
            ASSERT_TRUE(std::equal(ivm.begin(),ivm.end(),vec.begin()));
data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/int_vector_mapper_test.cpp:81:30:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
            ASSERT_TRUE(std::equal(ivm.begin(),ivm.end(),vec.begin()));
data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/int_vector_mapper_test.cpp:105:30:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
            ASSERT_TRUE(std::equal(ivm.begin(),ivm.end(),vec.begin()));
data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/int_vector_mapper_test.cpp:141:30:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
            ASSERT_TRUE(std::equal(ivm.begin(),ivm.end(),vec.begin()));
data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/int_vector_mapper_test.cpp:165:30:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
            ASSERT_TRUE(std::equal(ivm.begin(),ivm.end(),stdvec.begin()));
data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/int_vector_mapper_test.cpp:190:30:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
            ASSERT_TRUE(std::equal(ivm.begin(),ivm.end(),stdvec.begin()));
data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/int_vector_mapper_test.cpp:208:30:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
            ASSERT_TRUE(std::equal(ivmc.begin(),ivmc.end(),ivmu.begin()));
data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/int_vector_mapper_test.cpp:209:30:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
            ASSERT_TRUE(std::equal(ivmc.begin(),ivmc.end(),vec.begin()));
data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/int_vector_mapper_test.cpp:213:30:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
            ASSERT_TRUE(std::equal(ivmu.begin(),ivmu.end(),vec.begin()));
data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/int_vector_mapper_test.cpp:215:30:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
            ASSERT_TRUE(std::equal(ivmu.begin(),ivmu.end(),vec.begin()));
data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/int_vector_mapper_test.cpp:222:30:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
            ASSERT_TRUE(std::equal(ivmc.begin(),ivmc.end(),ivmu.begin()));
data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/int_vector_mapper_test.cpp:240:30:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
            ASSERT_TRUE(std::equal(bvm.begin(),bvm.end(),bv.begin()));
data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/int_vector_mapper_test.cpp:248:30:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
            ASSERT_TRUE(std::equal(bvm.begin(),bvm.end(),bv.begin()));
data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/int_vector_mapper_test.cpp:254:30:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
            ASSERT_TRUE(std::equal(bvm.begin(),bvm.end(),bv.begin()));
data/seqan3-3.0.2+ds/submodules/sdsl-lite/test/int_vector_mapper_test.cpp:277:30:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
            ASSERT_TRUE(std::equal(tmp_buf.begin(),tmp_buf.end(),vec.begin()));
data/seqan3-3.0.2+ds/test/include/seqan3/test/expect_range_eq.hpp:52:26:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
        if (std::ranges::equal(lhs_copy, rhs_copy))
data/seqan3-3.0.2+ds/test/include/seqan3/test/tmp_filename.hpp:38:34:  [1] (buffer) strlen:
  Does not handle strings that are not \0-terminated; if given one it may
  perform an over-read (it could cause a crash if unprotected) (CWE-126).
    if (_mktemp_s(template_name, strlen(template_name) + 1))
data/seqan3-3.0.2+ds/test/snippet/alphabet/quality/phred42_literal.cpp:15:42:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
    seqan3::debug_stream << std::ranges::equal(qual_vec, qual_vec2) << '\n'; // prints 1 (true)
data/seqan3-3.0.2+ds/test/snippet/alphabet/quality/phred63_literal.cpp:15:42:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
    seqan3::debug_stream << std::ranges::equal(qual_vec, qual_vec2) << '\n'; // prints 1 (true)
data/seqan3-3.0.2+ds/test/snippet/alphabet/quality/phred68legacy_literal.cpp:16:42:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
    seqan3::debug_stream << std::ranges::equal(qual_vec, qual_vec2) << '\n'; // prints 1 (true)
data/seqan3-3.0.2+ds/test/snippet/io/alignment_file/record_based_writing.cpp:16:31:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
    std::vector<seqan3::dna5> read;
data/seqan3-3.0.2+ds/test/snippet/io/alignment_file/record_based_writing.cpp:31:21:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
    record_type rec{read, ref_id, dummy_alignment};
data/seqan3-3.0.2+ds/test/snippet/io/alignment_file/record_based_writing.cpp:37:32:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
    fout.push_back(record_type{read, ref_id, dummy_alignment});
data/seqan3-3.0.2+ds/test/snippet/range/views/trim_dna5q.cpp:35:25:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
    assert(std::ranges::equal(std::string{"AGGA"}, v3 | seqan3::views::to<std::string>));
data/seqan3-3.0.2+ds/test/unit/alignment/aligned_sequence_test_template.hpp:259:19:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
        TypeParam read;
data/seqan3-3.0.2+ds/test/unit/alignment/aligned_sequence_test_template.hpp:261:54:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
        TestFixture::initialise_typed_test_container(read, seq_read);
data/seqan3-3.0.2+ds/test/unit/alignment/aligned_sequence_test_template.hpp:263:28:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
        seqan3::insert_gap(read, std::ranges::next(begin(read), 4), 1);
data/seqan3-3.0.2+ds/test/unit/alignment/aligned_sequence_test_template.hpp:263:58:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
        seqan3::insert_gap(read, std::ranges::next(begin(read), 4), 1);
data/seqan3-3.0.2+ds/test/unit/alignment/aligned_sequence_test_template.hpp:267:82:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
        EXPECT_EQ(expected, seqan3::detail::get_cigar_string(std::make_pair(ref, read)));
data/seqan3-3.0.2+ds/test/unit/alignment/aligned_sequence_test_template.hpp:289:19:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
        TypeParam read;
data/seqan3-3.0.2+ds/test/unit/alignment/aligned_sequence_test_template.hpp:291:54:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
        TestFixture::initialise_typed_test_container(read, seq_read);
data/seqan3-3.0.2+ds/test/unit/alignment/aligned_sequence_test_template.hpp:293:20:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
        insert_gap(read, std::ranges::next(std::ranges::begin(read), 4), 1);
data/seqan3-3.0.2+ds/test/unit/alignment/aligned_sequence_test_template.hpp:293:63:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
        insert_gap(read, std::ranges::next(std::ranges::begin(read), 4), 1);
data/seqan3-3.0.2+ds/test/unit/alignment/aligned_sequence_test_template.hpp:297:82:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
        EXPECT_EQ(expected, seqan3::detail::get_cigar_string(std::make_pair(ref, read), 5, 60));
data/seqan3-3.0.2+ds/test/unit/alignment/aligned_sequence_test_template.hpp:320:19:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
        TypeParam read;
data/seqan3-3.0.2+ds/test/unit/alignment/aligned_sequence_test_template.hpp:322:54:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
        TestFixture::initialise_typed_test_container(read, seq_read);
data/seqan3-3.0.2+ds/test/unit/alignment/aligned_sequence_test_template.hpp:324:28:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
        seqan3::insert_gap(read, std::ranges::next(std::ranges::begin(read), 4), 1);
data/seqan3-3.0.2+ds/test/unit/alignment/aligned_sequence_test_template.hpp:324:71:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
        seqan3::insert_gap(read, std::ranges::next(std::ranges::begin(read), 4), 1);
data/seqan3-3.0.2+ds/test/unit/alignment/aligned_sequence_test_template.hpp:329:83:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
        EXPECT_EQ(expected1, seqan3::detail::get_cigar_string(std::make_pair(ref, read), 0, 0, true));
data/seqan3-3.0.2+ds/test/unit/alignment/aligned_sequence_test_template.hpp:330:83:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
        EXPECT_EQ(expected2, seqan3::detail::get_cigar_string(std::make_pair(ref, read), 5, 60, true));
data/seqan3-3.0.2+ds/test/unit/alignment/matrix/debug_matrix_test.cpp:406:27:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
TEST_F(score_matrix_test, equal)
data/seqan3-3.0.2+ds/test/unit/alignment/matrix/debug_matrix_test.cpp:624:27:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
TEST_F(trace_matrix_test, equal)
data/seqan3-3.0.2+ds/test/unit/alignment/matrix/detail/simulated_alignment_test_template.hpp:82:95:  [1] (buffer) mismatch:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
        current = ((this->first[first_idx] == this->second[second_idx]) ? this->match : this->mismatch) + diagonal;
data/seqan3-3.0.2+ds/test/unit/alignment/matrix/detail/simulated_alignment_test_template.hpp:120:95:  [1] (buffer) mismatch:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
        current = ((this->first[first_idx] == this->second[second_idx]) ? this->match : this->mismatch) + diagonal;
data/seqan3-3.0.2+ds/test/unit/alignment/matrix/detail/simulated_alignment_test_template.hpp:134:22:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
    EXPECT_TRUE(std::equal(cmp_matrix.begin(), cmp_matrix.end(), this->gold_matrix().begin()));
data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_format_embl_test.cpp:89:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
struct read : public sequence_file_data
data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_format_embl_test.cpp:127:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
TEST_F(read, complete_header)
data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_format_embl_test.cpp:156:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
TEST_F(read, multiple_lines_before_seq)
data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_format_fasta_test.cpp:72:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
struct read : public sequence_file_data
data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_format_fasta_test.cpp:96:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
TEST_F(read, newline_before_eof)
data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_format_fasta_test.cpp:110:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
TEST_F(read, noblank_before_id)
data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_format_fasta_test.cpp:124:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
TEST_F(read, whitespace_in_seq)
data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_format_fasta_test.cpp:139:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
TEST_F(read, digits_in_seq)
data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_format_fasta_test.cpp:154:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
TEST_F(read, old_id_style)
data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_format_fasta_test.cpp:169:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
TEST_F(read, mixed_issues)
data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_format_fastq_test.cpp:89:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
struct read : public sequence_file_data
data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_format_fastq_test.cpp:125:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
TEST_F(read, newline_before_eof)
data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_format_fastq_test.cpp:145:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
TEST_F(read, whitespace_in_seq_qual)
data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_format_fastq_test.cpp:165:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
TEST_F(read, double_id_style)
data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_format_fastq_test.cpp:185:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
TEST_F(read, mixed_issues)
data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_format_fastq_test.cpp:205:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
TEST_F(read, only_qual)
data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_format_fastq_test.cpp:216:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
TEST_F(read, fail_no_seq_after_id)
data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_format_genbank_test.cpp:110:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
struct read : public sequence_file_read<seqan3::format_genbank>
data/seqan3-3.0.2+ds/test/unit/io/sequence_file/sequence_file_format_genbank_test.cpp:130:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
TEST_F(read, complete_header)
data/seqan3-3.0.2+ds/test/unit/io/structure_file/format_vienna_test.cpp:42:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
struct read : public ::testing::Test
data/seqan3-3.0.2+ds/test/unit/io/structure_file/format_vienna_test.cpp:148:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
TEST_F(read, standard)
data/seqan3-3.0.2+ds/test/unit/io/structure_file/format_vienna_test.cpp:153:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
TEST_F(read, newline_before_eof)
data/seqan3-3.0.2+ds/test/unit/io/structure_file/format_vienna_test.cpp:167:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
TEST_F(read, whitespace_in_seq)
data/seqan3-3.0.2+ds/test/unit/io/structure_file/format_vienna_test.cpp:181:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
TEST_F(read, no_energies)
data/seqan3-3.0.2+ds/test/unit/io/structure_file/format_vienna_test.cpp:196:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
TEST_F(read, no_ids)
data/seqan3-3.0.2+ds/test/unit/io/structure_file/format_vienna_test.cpp:209:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
TEST_F(read, spaces_and_carriage_return)
data/seqan3-3.0.2+ds/test/unit/io/structure_file/format_vienna_test.cpp:224:8:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
TEST_F(read, options_truncate_ids)
data/seqan3-3.0.2+ds/test/unit/io/structure_file/format_vienna_test.cpp:241:29:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
struct read_fields : public read {};
data/seqan3-3.0.2+ds/test/unit/io/structure_file/format_vienna_test.cpp:313:27:  [1] (buffer) read:
  Check buffer boundaries if used in a loop including recursive loops
  (CWE-120, CWE-20).
struct read_fail : public read {};
data/seqan3-3.0.2+ds/test/unit/range/views/view_pairwise_combine_test.cpp:414:25:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
    EXPECT_TRUE(ranges::equal(cmp, this->expect()));
data/seqan3-3.0.2+ds/test/unit/range/views/view_pairwise_combine_test.cpp:428:29:  [1] (buffer) equal:
  Function does not check the second iterator for over-read conditions
  (CWE-126). This function is often discouraged by most C++ coding standards
  in favor of its safer alternatives provided since C++14. Consider using a
  form of this function that checks the second iterator before potentially
  overflowing it.
        EXPECT_TRUE(ranges::equal(cmp, this->expect() | std::views::reverse));

ANALYSIS SUMMARY:

Hits = 340
Lines analyzed = 233300 in approximately 6.44 seconds (36238 lines/second)
Physical Source Lines of Code (SLOC) = 143489
Hits@level = [0] 228 [1] 182 [2]  98 [3]  37 [4]  23 [5]   0
Hits@level+ = [0+] 568 [1+] 340 [2+] 158 [3+]  60 [4+]  23 [5+]   0
Hits/KSLOC@level+ = [0+] 3.95849 [1+] 2.36952 [2+] 1.10113 [3+] 0.418151 [4+] 0.160291 [5+]   0
Dot directories skipped = 1 (--followdotdir overrides)
Minimum risk level = 1
Not every hit is necessarily a security vulnerability.
There may be other security vulnerabilities; review your code!
See 'Secure Programming HOWTO'
(https://dwheeler.com/secure-programs) for more information.