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        / /_/  >  | \// __ \|  |  / /_/ | |  ||  |  
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              grep rough audit - static analysis tool
                  v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
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bedtools-2.29.2+dfsg/docs/content/tools/shift.rst-15-user-defined number of bases. While something like this could be done with an 
bedtools-2.29.2+dfsg/docs/content/tools/shift.rst:16:``awk '{OFS="\t" print $1,$2+<shift>,$3+<shift>}'``,
bedtools-2.29.2+dfsg/docs/content/tools/shift.rst-17-``bedtools shift`` will restrict the resizing to the size of the chromosome 
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bedtools-2.29.2+dfsg/docs/content/tools/slop.rst-15-user-defined number of bases. While something like this could be done with an 
bedtools-2.29.2+dfsg/docs/content/tools/slop.rst:16:``awk '{OFS="\t" print $1,$2-<slop>,$3+<slop>}'``,
bedtools-2.29.2+dfsg/docs/content/tools/slop.rst-17-``bedtools slop`` will restrict the resizing to the size of the chromosome 
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bedtools-2.29.2+dfsg/src/utils/htslib/knetfile.c-177-		struct in_addr addr;
bedtools-2.29.2+dfsg/src/utils/htslib/knetfile.c:178:		addr.s_addr = inet_addr(host);
bedtools-2.29.2+dfsg/src/utils/htslib/knetfile.c:179:		hp = gethostbyaddr((char*)&addr, 4, AF_INET);
bedtools-2.29.2+dfsg/src/utils/htslib/knetfile.c-180-	}
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bedtools-2.29.2+dfsg/src/utils/htslib/m4/hts_prog_cc_warnings.m4-141-dnl Print result, with underscores as spaces
bedtools-2.29.2+dfsg/src/utils/htslib/m4/hts_prog_cc_warnings.m4:142:ac_arg_result=`echo "$hts_cv_prog_cc_warnings" | tr '#' ' '`
bedtools-2.29.2+dfsg/src/utils/htslib/m4/hts_prog_cc_warnings.m4-143-AC_MSG_RESULT($ac_arg_result)
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bedtools-2.29.2+dfsg/src/utils/htslib/m4/hts_prog_cc_warnings.m4-148-do
bedtools-2.29.2+dfsg/src/utils/htslib/m4/hts_prog_cc_warnings.m4:149:  ac_arg_sp=`echo "$ac_arg" | tr '#' ' '`
bedtools-2.29.2+dfsg/src/utils/htslib/m4/hts_prog_cc_warnings.m4-150-  AS_CASE([" $CFLAGS "],
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bedtools-2.29.2+dfsg/src/utils/htslib/version.sh-19-then
bedtools-2.29.2+dfsg/src/utils/htslib/version.sh:20:    v1=`expr "$VERSION" : '\([0-9]*\)'`
bedtools-2.29.2+dfsg/src/utils/htslib/version.sh:21:    v2=`expr "$VERSION" : '[0-9]*.\([0-9]*\)'`
bedtools-2.29.2+dfsg/src/utils/htslib/version.sh:22:    v3=`expr "$VERSION" : '[0-9]*.[0-9]*.\([0-9]*\)'`
bedtools-2.29.2+dfsg/src/utils/htslib/version.sh:23:    if [ -z "`expr "$VERSION" : '^\([0-9.]*\)$'`" ]
bedtools-2.29.2+dfsg/src/utils/htslib/version.sh-24-    then
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bedtools-2.29.2+dfsg/test/fisher/get.sh-1-ORG=hg19
bedtools-2.29.2+dfsg/test/fisher/get.sh:2:mysql --user=genome --host=genome-mysql.cse.ucsc.edu -A -D $ORG -P 3306   -e "select chrom,chromStart,chromEnd,K.transcript,X.geneSymbol from knownCanonical as K,kgXref as X where  X.kgId=K.transcript;" | sort -k1,1 -k2,2n > $ORG.knownCanonical.bed
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bedtools-2.29.2+dfsg/debian/rules-29-	# requiring bash this is taken for all scripts instead of checking first via /bin/sh -n
bedtools-2.29.2+dfsg/debian/rules:30:	for sh in `find $(CURDIR)/debian -name "*.sh"` ; do \
bedtools-2.29.2+dfsg/debian/rules-31-	    if ! head -n1 $${sh} | grep -q '^#! */bin/[ba]*sh' ; then \