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         / ___\_` __ \__  \ |  |  \/ __ | | \\_  __\
        / /_/  >  | \// __ \|  |  / /_/ | |  ||  |  
        \___  /|__|  (____  /____/\____ | |__||__|  
       /_____/            \/           \/           
              grep rough audit - static analysis tool
                  v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
bioperl-1.7.7/bin/bp_nrdb-73-if( $help || ! @ARGV ) {
bioperl-1.7.7/bin/bp_nrdb:74:    exec('perldoc',$0);
bioperl-1.7.7/bin/bp_nrdb-75-    exit(0);
##############################################
bioperl-1.7.7/bin/bp_index-122-
bioperl-1.7.7/bin/bp_index:123:exec('perldoc',$0) unless @ARGV;
bioperl-1.7.7/bin/bp_index-124-
##############################################
bioperl-1.7.7/bin/bp_fetch-147-
bioperl-1.7.7/bin/bp_fetch:148:exec('perldoc',$0) unless @ARGV;
bioperl-1.7.7/bin/bp_fetch-149-
##############################################
bioperl-1.7.7/bin/bp_mutate-155-sub usage {
bioperl-1.7.7/bin/bp_mutate:156:    exec( 'perldoc', $0 );
bioperl-1.7.7/bin/bp_mutate-157-    exit(0);
##############################################
bioperl-1.7.7/bin/bp_mrtrans-69-	   'sf|seqformat:s'=> \$seqformat,
bioperl-1.7.7/bin/bp_mrtrans:70:	   'h|help'        => sub{ exec('perldoc',$0);
bioperl-1.7.7/bin/bp_mrtrans-71-				   exit(0)
##############################################
bioperl-1.7.7/bin/bp_tree2pag-37-	   'o|out:s'          => \$outfile,
bioperl-1.7.7/bin/bp_tree2pag:38:	   'h|help'           => sub { exec('perldoc', $0);
bioperl-1.7.7/bin/bp_tree2pag-39-				       exit(0); },
##############################################
bioperl-1.7.7/bin/bp_biogetseq-18-if ($help || !@ARGV) {
bioperl-1.7.7/bin/bp_biogetseq:19:  system("perldoc $0");
bioperl-1.7.7/bin/bp_biogetseq-20-  exit 0;
##############################################
bioperl-1.7.7/bin/bp_search2gff-128-    'h|help'      => sub {
bioperl-1.7.7/bin/bp_search2gff:129:        exec( 'perldoc', $0 );
bioperl-1.7.7/bin/bp_search2gff-130-        exit(0);
##############################################
bioperl-1.7.7/bin/bp_seq_length-53-
bioperl-1.7.7/bin/bp_seq_length:54:exec('perldoc',$0) unless @ARGV;
bioperl-1.7.7/bin/bp_seq_length-55-
##############################################
bioperl-1.7.7/bin/bp_search2tribe-62-	   'w|weight:i'  => \$weight,
bioperl-1.7.7/bin/bp_search2tribe:63:	   'h|help'        => sub{ exec('perldoc',$0);
bioperl-1.7.7/bin/bp_search2tribe-64-				   exit(0)
##############################################
bioperl-1.7.7/bin/bp_taxonomy2tree-55-            'e|entrez'      => \$use_entrez,
bioperl-1.7.7/bin/bp_taxonomy2tree:56:            'h|help'        => sub { system('perldoc', $0); exit }, );
bioperl-1.7.7/bin/bp_taxonomy2tree-57-
##############################################
bioperl-1.7.7/bin/bp_unflatten_seq-196-	   "h|help"=>sub {
bioperl-1.7.7/bin/bp_unflatten_seq:197:	       system("perldoc $0");
bioperl-1.7.7/bin/bp_unflatten_seq-198-	       exit 0;
##############################################
bioperl-1.7.7/bin/bp_mask_by_search-86-	   'minlen:s'    => \$minlen,
bioperl-1.7.7/bin/bp_mask_by_search:87:	   'h|help'      => sub { system('perldoc', $0);
bioperl-1.7.7/bin/bp_mask_by_search-88-				  exit; },
##############################################
bioperl-1.7.7/bin/bp_fastam9_to_table-64-	   'o|out|outfile:s'     => \$outfile,
bioperl-1.7.7/bin/bp_fastam9_to_table:65:	   'h|help'              => sub { exec('perldoc',$0); exit; }
bioperl-1.7.7/bin/bp_fastam9_to_table-66-	   );
##############################################
bioperl-1.7.7/bin/bp_search2alnblocks-79-	   'v|verbose'    => \$verbose,
bioperl-1.7.7/bin/bp_search2alnblocks:80:	   'h|help'       => sub { system('perldoc', $0);
bioperl-1.7.7/bin/bp_search2alnblocks-81-				   exit(0) },
##############################################
bioperl-1.7.7/bin/bp_local_taxonomydb_query-15-	   'idx:s'     => \$idx_dir,
bioperl-1.7.7/bin/bp_local_taxonomydb_query:16:	   'h|help'    => sub{ exec('perldoc',$0);
bioperl-1.7.7/bin/bp_local_taxonomydb_query-17-				exit(0)
##############################################
bioperl-1.7.7/bin/bp_local_taxonomydb_query-20-unless( @ARGV || $nodesfile || $namesfile ) {
bioperl-1.7.7/bin/bp_local_taxonomydb_query:21:    exec('perldoc',$0);
bioperl-1.7.7/bin/bp_local_taxonomydb_query-22-    exit(0);
##############################################
bioperl-1.7.7/t/data/so.obo-84-name: scRNA_primary_transcript
bioperl-1.7.7/t/data/so.obo:85:def: "The primary transcript of any one of several small cytoplasmic RNA moleculespresent in the cytoplasm and sometimes nucleus of a eukaryote." [http:www.ebi.ac.uk/embl/WebFeat/align/scRNA_s.html]
bioperl-1.7.7/t/data/so.obo-86-synonym: "small_cytoplasmic_RNA" RELATED []
##############################################
bioperl-1.7.7/t/data/so.obo-91-name: scRNA
bioperl-1.7.7/t/data/so.obo:92:def: "Any one of several small cytoplasmic RNA moleculespresent in the cytoplasm and sometimes nucleus of a eukaryote." [http:www.ebi.ac.uk/embl/WebFeat/align/scRNA_s.html]
bioperl-1.7.7/t/data/so.obo-93-subset: SOFA
##############################################
bioperl-1.7.7/t/data/roa1.swiss-92-CC       PARTICLES, TRANSPORT OF POLY-A MRNA FROM THE NUCLEUS TO THE
bioperl-1.7.7/t/data/roa1.swiss:93:CC       CYTOPLASM AND MAY MODULATE SPLICE SITE SELECTION.
bioperl-1.7.7/t/data/roa1.swiss-94-CC   -!- SUBCELLULAR LOCATION: NUCLEAR. SHUTTLES CONTINUOUSLY BETWEEN THE
bioperl-1.7.7