===========================================================
.___ __ __
_________________ __ __ __| _/|__|/ |_
/ ___\_` __ \__ \ | | \/ __ | | \\_ __\
/ /_/ > | \// __ \| | / /_/ | | || |
\___ /|__| (____ /____/\____ | |__||__|
/_____/ \/ \/
grep rough audit - static analysis tool
v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
biosquid-1.9g+cvs20050121/Formats/formattest.pl-35- if ($autodetect[$i]) {
biosquid-1.9g+cvs20050121/Formats/formattest.pl:36: $output = `$binpath/seqstat $filename[$i]`;
biosquid-1.9g+cvs20050121/Formats/formattest.pl-37- if ($? != 0) { die "seqstat failed, autodetecting, on $filename[$i]"; }
##############################################
biosquid-1.9g+cvs20050121/Formats/formattest.pl-44- }
biosquid-1.9g+cvs20050121/Formats/formattest.pl:45: $output = `$binpath/seqstat --informat $format[$i] $filename[$i]`;
biosquid-1.9g+cvs20050121/Formats/formattest.pl-46- if ($? != 0) { die "seqstat failed, using --informat, on $filename[$i]"; }
##############################################
biosquid-1.9g+cvs20050121/Formats/formattest.pl-62-
biosquid-1.9g+cvs20050121/Formats/formattest.pl:63: `$binpath/sreformat --informat $format[$i] $format[$j] $filename[$i] > formattest.tmp`;
biosquid-1.9g+cvs20050121/Formats/formattest.pl-64- if ($? != 0) { die "sreformat failed ($format[$i] to $format[$j]) on $filename[$i]"; }
biosquid-1.9g+cvs20050121/Formats/formattest.pl:65: $output = `$binpath/seqstat --informat $format[$j] formattest.tmp`;
biosquid-1.9g+cvs20050121/Formats/formattest.pl-66- if ($? != 0) { die "seqstat failed after sreformat ($format[$i] to $format[$j]) on $filename[$i]"; }
##############################################
biosquid-1.9g+cvs20050121/Testsuite/testsuite.pm-16- my $output;
biosquid-1.9g+cvs20050121/Testsuite/testsuite.pm:17: $output = `./$cfgprog`;
biosquid-1.9g+cvs20050121/Testsuite/testsuite.pm-18- if ($output =~ /$flag\s+false/) { return 0; }
##############################################
biosquid-1.9g+cvs20050121/Testsuite/testsuite.pm-39- my ($cmd) = @_;
biosquid-1.9g+cvs20050121/Testsuite/testsuite.pm:40: system("$cmd 2>/dev/null"); # stderr directed away
biosquid-1.9g+cvs20050121/Testsuite/testsuite.pm-41- if ($? != 0) { $status = 1; &done(); }
##############################################
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl-17-
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl:18:system("$shuffle -i -n 5 -t 200 --dna -o $tmp");
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl-19-if ($? != 0) { print("FAILED (shuffle)\n"); exit(1); }
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl-20-
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl:21:system("$sindex $tmp");
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl-22-if ($? != 0) { print("FAILED (sindex)\n"); exit(1); }
##############################################
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl-24-
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl:25:system("$translate -o $tmp.pep -l 10 $tmp");
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl-26-if ($? != 0) { print("FAILED (translate)\n"); exit(1); }
##############################################
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl-39- print("$start..$end\n");
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl:40: system("$sfetch -d $tmp -f $start -t $end -o $tmp.orf $source");
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl-41- if ($? != 0) { print("FAILED (sfetch)\n"); exit(1); }
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl-42-
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl:43: $line = `$translate -l10 $tmp.orf | head -2 | tail -1`;
biosquid-1.9g+cvs20050121/Testsuite/translate-test.pl-44- if ($? != 0) { print("FAILED (2nd translate)\n"); exit(1); }
##############################################
biosquid-1.9g+cvs20050121/Testsuite/bug-1-sfetch-paths-28-
biosquid-1.9g+cvs20050121/Testsuite/bug-1-sfetch-paths:29:system("rm -rf $tmpdir");
biosquid-1.9g+cvs20050121/Testsuite/bug-1-sfetch-paths-30-testsuite::done();
##############################################
biosquid-1.9g+cvs20050121/config.sub-53-
biosquid-1.9g+cvs20050121/config.sub:54:me=`echo "$0" | sed -e 's,.*/,,'`
biosquid-1.9g+cvs20050121/config.sub-55-
##############################################
biosquid-1.9g+cvs20050121/config.sub-117-# Here we must recognize all the valid KERNEL-OS combinations.
biosquid-1.9g+cvs20050121/config.sub:118:maybe_os=`echo $1 | sed 's/^\(.*\)-\([^-]*-[^-]*\)$/\2/'`
biosquid-1.9g+cvs20050121/config.sub-119-case $maybe_os in
##############################################
biosquid-1.9g+cvs20050121/config.sub-121- os=-$maybe_os
biosquid-1.9g+cvs20050121/config.sub:122: basic_machine=`echo $1 | sed 's/^\(.*\)-\([^-]*-[^-]*\)$/\1/'`
biosquid-1.9g+cvs20050121/config.sub-123- ;;
biosquid-1.9g+cvs20050121/config.sub-124- *)
biosquid-1.9g+cvs20050121/config.sub:125: basic_machine=`echo $1 | sed 's/-[^-]*$//'`
biosquid-1.9g+cvs20050121/config.sub-126- if [ $basic_machine != $1 ]
biosquid-1.9g+cvs20050121/config.sub:127: then os=`echo $1 | sed 's/.*-/-/'`
biosquid-1.9g+cvs20050121/config.sub-128- else os=; fi
##############################################
biosquid-1.9g+cvs20050121/config.sub-172- os=-sco3.2v5
biosquid-1.9g+cvs20050121/config.sub:173: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
biosquid-1.9g+cvs20050121/config.sub-174- ;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-176- os=-sco3.2v4
biosquid-1.9g+cvs20050121/config.sub:177: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
biosquid-1.9g+cvs20050121/config.sub-178- ;;
biosquid-1.9g+cvs20050121/config.sub-179- -sco3.2.[4-9]*)
biosquid-1.9g+cvs20050121/config.sub:180: os=`echo $os | sed -e 's/sco3.2./sco3.2v/'`
biosquid-1.9g+cvs20050121/config.sub:181: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
biosquid-1.9g+cvs20050121/config.sub-182- ;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-184- # Don't forget version if it is 3.2v4 or newer.
biosquid-1.9g+cvs20050121/config.sub:185: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
biosquid-1.9g+cvs20050121/config.sub-186- ;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-188- os=-sco3.2v2
biosquid-1.9g+cvs20050121/config.sub:189: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
biosquid-1.9g+cvs20050121/config.sub-190- ;;
biosquid-1.9g+cvs20050121/config.sub-191- -udk*)
biosquid-1.9g+cvs20050121/config.sub:192: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
biosquid-1.9g+cvs20050121/config.sub-193- ;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-195- os=-isc2.2
biosquid-1.9g+cvs20050121/config.sub:196: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
biosquid-1.9g+cvs20050121/config.sub-197- ;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-201- -isc*)
biosquid-1.9g+cvs20050121/config.sub:202: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
biosquid-1.9g+cvs20050121/config.sub-203- ;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-207- -ptx*)
biosquid-1.9g+cvs20050121/config.sub:208: basic_machine=`echo $1 | sed -e 's/86-.*/86-sequent/'`
biosquid-1.9g+cvs20050121/config.sub-209- ;;
biosquid-1.9g+cvs20050121/config.sub-210- -windowsnt*)
biosquid-1.9g+cvs20050121/config.sub:211: os=`echo $os | sed -e 's/windowsnt/winnt/'`
biosquid-1.9g+cvs20050121/config.sub-212- ;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-263- *-*-*)
biosquid-1.9g+cvs20050121/config.sub:264: echo Invalid configuration \`$1\': machine \`$basic_machine\' not recognized 1>&2
biosquid-1.9g+cvs20050121/config.sub-265- exit 1
##############################################
biosquid-1.9g+cvs20050121/config.sub-519- i*86v32)
biosquid-1.9g+cvs20050121/config.sub:520: basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
biosquid-1.9g+cvs20050121/config.sub-521- os=-sysv32
##############################################
biosquid-1.9g+cvs20050121/config.sub-523- i*86v4*)
biosquid-1.9g+cvs20050121/config.sub:524: basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
biosquid-1.9g+cvs20050121/config.sub-525- os=-sysv4
##############################################
biosquid-1.9g+cvs20050121/config.sub-527- i*86v)
biosquid-1.9g+cvs20050121/config.sub:528: basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
biosquid-1.9g+cvs20050121/config.sub-529- os=-sysv
##############################################
biosquid-1.9g+cvs20050121/config.sub-531- i*86sol2)
biosquid-1.9g+cvs20050121/config.sub:532: basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
biosquid-1.9g+cvs20050121/config.sub-533- os=-solaris2
##############################################
biosquid-1.9g+cvs20050121/config.sub-587- mips3*-*)
biosquid-1.9g+cvs20050121/config.sub:588: basic_machine=`echo $basic_machine | sed -e 's/mips3/mips64/'`
biosquid-1.9g+cvs20050121/config.sub-589- ;;
biosquid-1.9g+cvs20050121/config.sub-590- mips3*)
biosquid-1.9g+cvs20050121/config.sub:591: basic_machine=`echo $basic_machine | sed -e 's/mips3/mips64/'`-unknown
biosquid-1.9g+cvs20050121/config.sub-592- ;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-714- pentium-* | p5-* | k5-* | k6-* | nexgen-*)
biosquid-1.9g+cvs20050121/config.sub:715: basic_machine=i586-`echo $basic_machine | sed 's/^[^-]*-//'`
biosquid-1.9g+cvs20050121/config.sub-716- ;;
biosquid-1.9g+cvs20050121/config.sub-717- pentiumpro-* | p6-* | 6x86-* | athlon-*)
biosquid-1.9g+cvs20050121/config.sub:718: basic_machine=i686-`echo $basic_machine | sed 's/^[^-]*-//'`
biosquid-1.9g+cvs20050121/config.sub-719- ;;
biosquid-1.9g+cvs20050121/config.sub-720- pentiumii-* | pentium2-*)
biosquid-1.9g+cvs20050121/config.sub:721: basic_machine=i686-`echo $basic_machine | sed 's/^[^-]*-//'`
biosquid-1.9g+cvs20050121/config.sub-722- ;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-729- ;;
biosquid-1.9g+cvs20050121/config.sub:730: ppc-*) basic_machine=powerpc-`echo $basic_machine | sed 's/^[^-]*-//'`
biosquid-1.9g+cvs20050121/config.sub-731- ;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-735- ppcle-* | powerpclittle-*)
biosquid-1.9g+cvs20050121/config.sub:736: basic_machine=powerpcle-`echo $basic_machine | sed 's/^[^-]*-//'`
biosquid-1.9g+cvs20050121/config.sub-737- ;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-977- *)
biosquid-1.9g+cvs20050121/config.sub:978: echo Invalid configuration \`$1\': machine \`$basic_machine\' not recognized 1>&2
biosquid-1.9g+cvs20050121/config.sub-979- exit 1
##############################################
biosquid-1.9g+cvs20050121/config.sub-985- *-digital*)
biosquid-1.9g+cvs20050121/config.sub:986: basic_machine=`echo $basic_machine | sed 's/digital.*/dec/'`
biosquid-1.9g+cvs20050121/config.sub-987- ;;
biosquid-1.9g+cvs20050121/config.sub-988- *-commodore*)
biosquid-1.9g+cvs20050121/config.sub:989: basic_machine=`echo $basic_machine | sed 's/commodore.*/cbm/'`
biosquid-1.9g+cvs20050121/config.sub-990- ;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-1003- -solaris1 | -solaris1.*)
biosquid-1.9g+cvs20050121/config.sub:1004: os=`echo $os | sed -e 's|solaris1|sunos4|'`
biosquid-1.9g+cvs20050121/config.sub-1005- ;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-1015- -gnu/linux*)
biosquid-1.9g+cvs20050121/config.sub:1016: os=`echo $os | sed -e 's|gnu/linux|linux-gnu|'`
biosquid-1.9g+cvs20050121/config.sub-1017- ;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-1057- -mac*)
biosquid-1.9g+cvs20050121/config.sub:1058: os=`echo $os | sed -e 's|mac|macos|'`
biosquid-1.9g+cvs20050121/config.sub-1059- ;;
biosquid-1.9g+cvs20050121/config.sub-1060- -linux*)
biosquid-1.9g+cvs20050121/config.sub:1061: os=`echo $os | sed -e 's|linux|linux-gnu|'`
biosquid-1.9g+cvs20050121/config.sub-1062- ;;
biosquid-1.9g+cvs20050121/config.sub-1063- -sunos5*)
biosquid-1.9g+cvs20050121/config.sub:1064: os=`echo $os | sed -e 's|sunos5|solaris2|'`
biosquid-1.9g+cvs20050121/config.sub-1065- ;;
biosquid-1.9g+cvs20050121/config.sub-1066- -sunos6*)
biosquid-1.9g+cvs20050121/config.sub:1067: os=`echo $os | sed -e 's|sunos6|solaris3|'`
biosquid-1.9g+cvs20050121/config.sub-1068- ;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-1103- -sinix5.*)
biosquid-1.9g+cvs20050121/config.sub:1104: os=`echo $os | sed -e 's|sinix|sysv|'`
biosquid-1.9g+cvs20050121/config.sub-1105- ;;
##############################################
biosquid-1.9g+cvs20050121/config.sub-1142- # Get rid of the `-' at the beginning of $os.
biosquid-1.9g+cvs20050121/config.sub:1143: os=`echo $os | sed 's/[^-]*-//'`
biosquid-1.9g+cvs20050121/config.sub:1144: echo Invalid configuration \`$1\': system \`$os\' not recognized 1>&2
biosquid-1.9g+cvs20050121/config.sub-1145- exit 1
##############################################
biosquid-1.9g+cvs20050121/config.sub-1362- esac
biosquid-1.9g+cvs20050121/config.sub:1363: basic_machine=`echo $basic_machine | sed "s/unknown/$vendor/"`
biosquid-1.9g+cvs20050121/config.sub-1364- ;;
##############################################
biosquid-1.9g+cvs20050121/install-sh-85-
biosquid-1.9g+cvs20050121/install-sh:86: -t=*) transformarg=`echo $1 | sed 's/-t=//'`
biosquid-1.9g+cvs20050121/install-sh-87- shift
##############################################
biosquid-1.9g+cvs20050121/install-sh-89-
biosquid-1.9g+cvs20050121/install-sh:90: -b=*) transformbasename=`echo $1 | sed 's/-b=//'`
biosquid-1.9g+cvs20050121/install-sh-91- shift
##############################################
biosquid-1.9g+cvs20050121/install-sh-151- then
biosquid-1.9g+cvs20050121/install-sh:152: dst="$dst"/`basename $src`
biosquid-1.9g+cvs20050121/install-sh-153- else
##############################################
biosquid-1.9g+cvs20050121/install-sh-158-## this sed command emulates the dirname command
biosquid-1.9g+cvs20050121/install-sh:159:dstdir=`echo $dst | sed -e 's,[^/]*$,,;s,/$,,;s,^$,.,'`
biosquid-1.9g+cvs20050121/install-sh-160-
##############################################
biosquid-1.9g+cvs20050121/install-sh-172-IFS='%'
biosquid-1.9g+cvs20050121/install-sh:173:set - `echo ${dstdir} | sed -e 's@/@%@g' -e 's@^%@/@'`
biosquid-1.9g+cvs20050121/install-sh-174-IFS="${oIFS}"
##############################################
biosquid-1.9g+cvs20050121/install-sh-206- then
biosquid-1.9g+cvs20050121/install-sh:207: dstfile=`basename $dst`
biosquid-1.9g+cvs20050121/install-sh-208- else
##############################################
biosquid-1.9g+cvs20050121/install-sh-216- then
biosquid-1.9g+cvs20050121/install-sh:217: dstfile=`basename $dst`
biosquid-1.9g+cvs20050121/install-sh-218- else
##############################################
biosquid-1.9g+cvs20050121/debian/rules-73- for manpage in Man/*.man; do \
biosquid-1.9g+cvs20050121/debian/rules:74: cp -a $${manpage} $(CURDIR)/debian/biosquid/usr/share/man/man1/`basename $${manpage} .man`.1 ; \
biosquid-1.9g+cvs20050121/debian/rules-75- done
##############################################
biosquid-1.9g+cvs20050121/debian/tests/run-unit-test-14-if [ "$AUTOPKGTEST_TMP" = "" ] ; then
biosquid-1.9g+cvs20050121/debian/tests/run-unit-test:15: AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
biosquid-1.9g+cvs20050121/debian/tests/run-unit-test-16- trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
##############################################
biosquid-1.9g+cvs20050121/.pc/perl-testsuite-inc.patch/Testsuite/bug-1-sfetch-paths-27-
biosquid-1.9g+cvs20050121/.pc/perl-testsuite-inc.patch/Testsuite/bug-1-sfetch-paths:28:system("rm -rf $tmpdir");
biosquid-1.9g+cvs20050121/.pc/perl-testsuite-inc.patch/Testsuite/bug-1-sfetch-paths-29-testsuite::done();