===========================================================
.___ __ __
_________________ __ __ __| _/|__|/ |_
/ ___\_` __ \__ \ | | \/ __ | | \\_ __\
/ /_/ > | \// __ \| | / /_/ | | || |
\___ /|__| (____ /____/\____ | |__||__|
/_____/ \/ \/
grep rough audit - static analysis tool
v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
clustalo-1.2.4/m4/libtool.m4-120-done
clustalo-1.2.4/m4/libtool.m4:121:cc_basename=`$ECHO "X$cc_temp" | $Xsed -e 's%.*/%%' -e "s%^$host_alias-%%"`
clustalo-1.2.4/m4/libtool.m4-122-])
##############################################
clustalo-1.2.4/m4/libtool.m4-410-m4_define([_LT_CONFIG_STATUS_DECLARE],
clustalo-1.2.4/m4/libtool.m4:411:[$1='`$ECHO "X$][$1" | $Xsed -e "$delay_single_quote_subst"`'])
clustalo-1.2.4/m4/libtool.m4-412-
##############################################
clustalo-1.2.4/m4/libtool.m4-420-#
clustalo-1.2.4/m4/libtool.m4:421:# <var>='`$ECHO "X$<var>" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/m4/libtool.m4-422-m4_defun([_LT_CONFIG_STATUS_DECLARATIONS],
##############################################
clustalo-1.2.4/m4/libtool.m4-522-]], lt_decl_quote_varnames); do
clustalo-1.2.4/m4/libtool.m4:523: case \`eval \\\\\$ECHO "X\\\\\$\$var"\` in
clustalo-1.2.4/m4/libtool.m4-524- *[[\\\\\\\`\\"\\\$]]*)
clustalo-1.2.4/m4/libtool.m4:525: eval "lt_\$var=\\\\\\"\\\`\\\$ECHO \\"X\\\$\$var\\" | \\\$Xsed -e \\"\\\$sed_quote_subst\\"\\\`\\\\\\""
clustalo-1.2.4/m4/libtool.m4-526- ;;
##############################################
clustalo-1.2.4/m4/libtool.m4-535-]], lt_decl_dquote_varnames); do
clustalo-1.2.4/m4/libtool.m4:536: case \`eval \\\\\$ECHO "X\\\\\$\$var"\` in
clustalo-1.2.4/m4/libtool.m4-537- *[[\\\\\\\`\\"\\\$]]*)
clustalo-1.2.4/m4/libtool.m4:538: eval "lt_\$var=\\\\\\"\\\`\\\$ECHO \\"X\\\$\$var\\" | \\\$Xsed -e \\"\\\$double_quote_subst\\" -e \\"\\\$sed_quote_subst\\" -e \\"\\\$delay_variable_subst\\"\\\`\\\\\\""
clustalo-1.2.4/m4/libtool.m4-539- ;;
##############################################
clustalo-1.2.4/m4/libtool.m4-548-*'\\\[$]0 --fallback-echo"')dnl "
clustalo-1.2.4/m4/libtool.m4:549: lt_ECHO=\`\$ECHO "X\$lt_ECHO" | \$Xsed -e 's/\\\\\\\\\\\\\\\[$]0 --fallback-echo"\[$]/\[$]0 --fallback-echo"/'\`
clustalo-1.2.4/m4/libtool.m4-550- ;;
##############################################
clustalo-1.2.4/m4/libtool.m4-684-
clustalo-1.2.4/m4/libtool.m4:685:# `$ECHO "$ofile" | sed 's%^.*/%%'` - Provide generalized library-building support services.
clustalo-1.2.4/m4/libtool.m4-686-# Generated automatically by $as_me ($PACKAGE$TIMESTAMP) $VERSION
##############################################
clustalo-1.2.4/m4/libtool.m4-1031- }'
clustalo-1.2.4/m4/libtool.m4:1032:aix_libpath=`dump -H conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
clustalo-1.2.4/m4/libtool.m4-1033-# Check for a 64-bit object if we didn't find anything.
clustalo-1.2.4/m4/libtool.m4-1034-if test -z "$aix_libpath"; then
clustalo-1.2.4/m4/libtool.m4:1035: aix_libpath=`dump -HX64 conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
clustalo-1.2.4/m4/libtool.m4-1036-fi],[])
##############################################
clustalo-1.2.4/m4/libtool.m4-1063- # Remove one level of quotation (which was required for Make).
clustalo-1.2.4/m4/libtool.m4:1064: ECHO=`echo "$lt_ECHO" | sed 's,\\\\\[$]\\[$]0,'[$]0','`
clustalo-1.2.4/m4/libtool.m4-1065- ;;
##############################################
clustalo-1.2.4/m4/libtool.m4-1074- :
clustalo-1.2.4/m4/libtool.m4:1075:elif test "X`{ $ECHO '\t'; } 2>/dev/null`" = 'X\t' ; then
clustalo-1.2.4/m4/libtool.m4-1076- # Yippee, $ECHO works!
##############################################
clustalo-1.2.4/m4/libtool.m4-1100- # expected sizes: less than 2Kb, 1Kb, 512 bytes, 16 bytes, ...
clustalo-1.2.4/m4/libtool.m4:1101: if { echo_test_string=`eval $cmd`; } 2>/dev/null &&
clustalo-1.2.4/m4/libtool.m4-1102- { test "X$echo_test_string" = "X$echo_test_string"; } 2>/dev/null
##############################################
clustalo-1.2.4/m4/libtool.m4-1108-
clustalo-1.2.4/m4/libtool.m4:1109: if test "X`{ $ECHO '\t'; } 2>/dev/null`" = 'X\t' &&
clustalo-1.2.4/m4/libtool.m4:1110: echo_testing_string=`{ $ECHO "$echo_test_string"; } 2>/dev/null` &&
clustalo-1.2.4/m4/libtool.m4-1111- test "X$echo_testing_string" = "X$echo_test_string"; then
##############################################
clustalo-1.2.4/m4/libtool.m4-1123- if (test -f $dir/echo || test -f $dir/echo$ac_exeext) &&
clustalo-1.2.4/m4/libtool.m4:1124: test "X`($dir/echo '\t') 2>/dev/null`" = 'X\t' &&
clustalo-1.2.4/m4/libtool.m4:1125: echo_testing_string=`($dir/echo "$echo_test_string") 2>/dev/null` &&
clustalo-1.2.4/m4/libtool.m4-1126- test "X$echo_testing_string" = "X$echo_test_string"; then
##############################################
clustalo-1.2.4/m4/libtool.m4-1135- if test "X`{ print -r '\t'; } 2>/dev/null`" = 'X\t' &&
clustalo-1.2.4/m4/libtool.m4:1136: echo_testing_string=`{ print -r "$echo_test_string"; } 2>/dev/null` &&
clustalo-1.2.4/m4/libtool.m4-1137- test "X$echo_testing_string" = "X$echo_test_string"; then
##############################################
clustalo-1.2.4/m4/libtool.m4-1150- ECHO='printf %s\n'
clustalo-1.2.4/m4/libtool.m4:1151: if test "X`{ $ECHO '\t'; } 2>/dev/null`" = 'X\t' &&
clustalo-1.2.4/m4/libtool.m4:1152: echo_testing_string=`{ $ECHO "$echo_test_string"; } 2>/dev/null` &&
clustalo-1.2.4/m4/libtool.m4-1153- test "X$echo_testing_string" = "X$echo_test_string"; then
##############################################
clustalo-1.2.4/m4/libtool.m4-1155- :
clustalo-1.2.4/m4/libtool.m4:1156: elif echo_testing_string=`($ORIGINAL_CONFIG_SHELL "[$]0" --fallback-echo '\t') 2>/dev/null` &&
clustalo-1.2.4/m4/libtool.m4-1157- test "X$echo_testing_string" = 'X\t' &&
clustalo-1.2.4/m4/libtool.m4:1158: echo_testing_string=`($ORIGINAL_CONFIG_SHELL "[$]0" --fallback-echo "$echo_test_string") 2>/dev/null` &&
clustalo-1.2.4/m4/libtool.m4-1159- test "X$echo_testing_string" = "X$echo_test_string"; then
##############################################
clustalo-1.2.4/m4/libtool.m4-1164- ECHO="$CONFIG_SHELL [$]0 --fallback-echo"
clustalo-1.2.4/m4/libtool.m4:1165: elif echo_testing_string=`($CONFIG_SHELL "[$]0" --fallback-echo '\t') 2>/dev/null` &&
clustalo-1.2.4/m4/libtool.m4-1166- test "X$echo_testing_string" = 'X\t' &&
clustalo-1.2.4/m4/libtool.m4:1167: echo_testing_string=`($CONFIG_SHELL "[$]0" --fallback-echo "$echo_test_string") 2>/dev/null` &&
clustalo-1.2.4/m4/libtool.m4-1168- test "X$echo_testing_string" = "X$echo_test_string"; then
##############################################
clustalo-1.2.4/m4/libtool.m4-1174- for cmd in 'echo test' 'sed 2q "[$]0"' 'sed 10q "[$]0"' 'sed 20q "[$]0"' 'sed 50q "[$]0"'; do
clustalo-1.2.4/m4/libtool.m4:1175: if { test "X$echo_test_string" = "X`eval $cmd`"; } 2>/dev/null
clustalo-1.2.4/m4/libtool.m4-1176- then
##############################################
clustalo-1.2.4/m4/libtool.m4-1182- if test "$prev" != 'sed 50q "[$]0"'; then
clustalo-1.2.4/m4/libtool.m4:1183: echo_test_string=`eval $prev`
clustalo-1.2.4/m4/libtool.m4-1184- export echo_test_string
##############################################
clustalo-1.2.4/m4/libtool.m4-1225- if AC_TRY_EVAL(ac_compile); then
clustalo-1.2.4/m4/libtool.m4:1226: case `/usr/bin/file conftest.$ac_objext` in
clustalo-1.2.4/m4/libtool.m4-1227- *ELF-32*)
##############################################
clustalo-1.2.4/m4/libtool.m4-1241- if test "$lt_cv_prog_gnu_ld" = yes; then
clustalo-1.2.4/m4/libtool.m4:1242: case `/usr/bin/file conftest.$ac_objext` in
clustalo-1.2.4/m4/libtool.m4-1243- *32-bit*)
##############################################
clustalo-1.2.4/m4/libtool.m4-1253- else
clustalo-1.2.4/m4/libtool.m4:1254: case `/usr/bin/file conftest.$ac_objext` in
clustalo-1.2.4/m4/libtool.m4-1255- *32-bit*)
##############################################
clustalo-1.2.4/m4/libtool.m4-1545- # And add a safety zone
clustalo-1.2.4/m4/libtool.m4:1546: lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \/ 4`
clustalo-1.2.4/m4/libtool.m4:1547: lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \* 3`
clustalo-1.2.4/m4/libtool.m4-1548- ;;
##############################################
clustalo-1.2.4/m4/libtool.m4-1573- if test -n "$kargmax"; then
clustalo-1.2.4/m4/libtool.m4:1574: lt_cv_sys_max_cmd_len=`echo $kargmax | sed 's/.*[[ ]]//'`
clustalo-1.2.4/m4/libtool.m4-1575- else
##############################################
clustalo-1.2.4/m4/libtool.m4-1581- if test -n "$lt_cv_sys_max_cmd_len"; then
clustalo-1.2.4/m4/libtool.m4:1582: lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \/ 4`
clustalo-1.2.4/m4/libtool.m4:1583: lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \* 3`
clustalo-1.2.4/m4/libtool.m4-1584- else
##############################################
clustalo-1.2.4/m4/libtool.m4-1593- # we can't tell.
clustalo-1.2.4/m4/libtool.m4:1594: while { test "X"`$SHELL [$]0 --fallback-echo "X$teststring$teststring" 2>/dev/null` \
clustalo-1.2.4/m4/libtool.m4-1595- = "XX$teststring$teststring"; } >/dev/null 2>&1 &&
##############################################
clustalo-1.2.4/m4/libtool.m4-1597- do
clustalo-1.2.4/m4/libtool.m4:1598: i=`expr $i + 1`
clustalo-1.2.4/m4/libtool.m4-1599- teststring=$teststring$teststring
##############################################
clustalo-1.2.4/m4/libtool.m4-1601- # Only check the string length outside the loop.
clustalo-1.2.4/m4/libtool.m4:1602: lt_cv_sys_max_cmd_len=`expr "X$teststring" : ".*" 2>&1`
clustalo-1.2.4/m4/libtool.m4-1603- teststring=
##############################################
clustalo-1.2.4/m4/libtool.m4-1606- # linker. It appears as though 1/2 is a usable value.
clustalo-1.2.4/m4/libtool.m4:1607: lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \/ 2`
clustalo-1.2.4/m4/libtool.m4-1608- fi
##############################################
clustalo-1.2.4/m4/libtool.m4-1921- if test "$hard_links" = no; then
clustalo-1.2.4/m4/libtool.m4:1922: AC_MSG_WARN([`$CC' does not support `-c -o', so `make -j' may be unsafe])
clustalo-1.2.4/m4/libtool.m4-1923- need_locks=warn
##############################################
clustalo-1.2.4/m4/libtool.m4-2047- esac
clustalo-1.2.4/m4/libtool.m4:2048: lt_search_path_spec=`$CC -print-search-dirs | awk $lt_awk_arg | $SED -e "s/^libraries://" -e "s,=/,/,g"`
clustalo-1.2.4/m4/libtool.m4-2049- if $ECHO "$lt_search_path_spec" | $GREP ';' >/dev/null ; then
##############################################
clustalo-1.2.4/m4/libtool.m4-2053- # okay in the real world where ";" in dirpaths is itself problematic.
clustalo-1.2.4/m4/libtool.m4:2054: lt_search_path_spec=`$ECHO "$lt_search_path_spec" | $SED -e 's/;/ /g'`
clustalo-1.2.4/m4/libtool.m4-2055- else
clustalo-1.2.4/m4/libtool.m4:2056: lt_search_path_spec=`$ECHO "$lt_search_path_spec" | $SED -e "s/$PATH_SEPARATOR/ /g"`
clustalo-1.2.4/m4/libtool.m4-2057- fi
##############################################
clustalo-1.2.4/m4/libtool.m4-2060- lt_tmp_lt_search_path_spec=
clustalo-1.2.4/m4/libtool.m4:2061: lt_multi_os_dir=`$CC $CPPFLAGS $CFLAGS $LDFLAGS -print-multi-os-directory 2>/dev/null`
clustalo-1.2.4/m4/libtool.m4-2062- for lt_sys_path in $lt_search_path_spec; do
##############################################
clustalo-1.2.4/m4/libtool.m4-2089-}'`
clustalo-1.2.4/m4/libtool.m4:2090: sys_lib_search_path_spec=`$ECHO $lt_search_path_spec`
clustalo-1.2.4/m4/libtool.m4-2091-else
##############################################
clustalo-1.2.4/m4/libtool.m4-2177- # Create ${libname}_ixlibrary.a entries in /sys/libs.
clustalo-1.2.4/m4/libtool.m4:2178: finish_eval='for lib in `ls $libdir/*.ixlibrary 2>/dev/null`; do libname=`$ECHO "X$lib" | $Xsed -e '\''s%^.*/\([[^/]]*\)\.ixlibrary$%\1%'\''`; test $RM /sys/libs/${libname}_ixlibrary.a; $show "cd /sys/libs && $LN_S $lib ${libname}_ixlibrary.a"; cd /sys/libs && $LN_S $lib ${libname}_ixlibrary.a || exit 1; done'
clustalo-1.2.4/m4/libtool.m4-2179- ;;
##############################################
clustalo-1.2.4/m4/libtool.m4-2212- # DLL is installed to $(libdir)/../bin by postinstall_cmds
clustalo-1.2.4/m4/libtool.m4:2213: postinstall_cmds='base_file=`basename \${file}`~
clustalo-1.2.4/m4/libtool.m4:2214: dlpath=`$SHELL 2>&1 -c '\''. $dir/'\''\${base_file}'\''i; echo \$dlname'\''`~
clustalo-1.2.4/m4/libtool.m4:2215: dldir=$destdir/`dirname \$dlpath`~
clustalo-1.2.4/m4/libtool.m4-2216- test -d \$dldir || mkdir -p \$dldir~
##############################################
clustalo-1.2.4/m4/libtool.m4-2221- fi'
clustalo-1.2.4/m4/libtool.m4:2222: postuninstall_cmds='dldll=`$SHELL 2>&1 -c '\''. $file; echo \$dlname'\''`~
clustalo-1.2.4/m4/libtool.m4-2223- dlpath=$dir/\$dldll~
##############################################
clustalo-1.2.4/m4/libtool.m4-2229- # Cygwin DLLs use 'cyg' prefix rather than 'lib'
clustalo-1.2.4/m4/libtool.m4:2230: soname_spec='`echo ${libname} | sed -e 's/^lib/cyg/'``echo ${release} | $SED -e 's/[[.]]/-/g'`${versuffix}${shared_ext}'
clustalo-1.2.4/m4/libtool.m4-2231- sys_lib_search_path_spec="/usr/lib /lib/w32api /lib /usr/local/lib"
##############################################
clustalo-1.2.4/m4/libtool.m4-2234- # MinGW DLLs use traditional 'lib' prefix
clustalo-1.2.4/m4/libtool.m4:2235: soname_spec='${libname}`echo ${release} | $SED -e 's/[[.]]/-/g'`${versuffix}${shared_ext}'
clustalo-1.2.4/m4/libtool.m4:2236: sys_lib_search_path_spec=`$CC -print-search-dirs | $GREP "^libraries:" | $SED -e "s/^libraries://" -e "s,=/,/,g"`
clustalo-1.2.4/m4/libtool.m4-2237- if $ECHO "$sys_lib_search_path_spec" | [$GREP ';[c-zC-Z]:/' >/dev/null]; then
##############################################
clustalo-1.2.4/m4/libtool.m4-2243- # which wouldn't understand a cygwinified path. Ahh.
clustalo-1.2.4/m4/libtool.m4:2244: sys_lib_search_path_spec=`$ECHO "$sys_lib_search_path_spec" | $SED -e 's/;/ /g'`
clustalo-1.2.4/m4/libtool.m4-2245- else
clustalo-1.2.4/m4/libtool.m4:2246: sys_lib_search_path_spec=`$ECHO "$sys_lib_search_path_spec" | $SED -e "s/$PATH_SEPARATOR/ /g"`
clustalo-1.2.4/m4/libtool.m4-2247- fi
##############################################
clustalo-1.2.4/m4/libtool.m4-2250- # pw32 DLLs use 'pw' prefix rather than 'lib'
clustalo-1.2.4/m4/libtool.m4:2251: library_names_spec='`echo ${libname} | sed -e 's/^lib/pw/'``echo ${release} | $SED -e 's/[[.]]/-/g'`${versuffix}${shared_ext}'
clustalo-1.2.4/m4/libtool.m4-2252- ;;
##############################################
clustalo-1.2.4/m4/libtool.m4-2256- *)
clustalo-1.2.4/m4/libtool.m4:2257: library_names_spec='${libname}`echo ${release} | $SED -e 's/[[.]]/-/g'`${versuffix}${shared_ext} $libname.lib'
clustalo-1.2.4/m4/libtool.m4-2258- ;;
##############################################
clustalo-1.2.4/m4/libtool.m4-2273- shlibpath_var=DYLD_LIBRARY_PATH
clustalo-1.2.4/m4/libtool.m4:2274: shrext_cmds='`test .$module = .yes && echo .so || echo .dylib`'
clustalo-1.2.4/m4/libtool.m4-2275-m4_if([$1], [],[
##############################################
clustalo-1.2.4/m4/libtool.m4-2474- if test -f /etc/ld.so.conf; then
clustalo-1.2.4/m4/libtool.m4:2475: lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \[$]2)); skip = 1; } { if (!skip) print \[$]0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;/^[ ]*hwcap[ ]/d;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
clustalo-1.2.4/m4/libtool.m4-2476- sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
##############################################
clustalo-1.2.4/m4/libtool.m4-2548- shlibpath_var=LD_LIBRARY_PATH
clustalo-1.2.4/m4/libtool.m4:2549: if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then
clustalo-1.2.4/m4/libtool.m4-2550- case $host_os in
##############################################
clustalo-1.2.4/m4/libtool.m4-2763- "file_magic "*)
clustalo-1.2.4/m4/libtool.m4:2764: file_magic_regex=`expr "$deplibs_check_method" : "file_magic \(.*\)"`
clustalo-1.2.4/m4/libtool.m4-2765- MAGIC_CMD="$lt_cv_path_MAGIC_CMD"
##############################################
clustalo-1.2.4/m4/libtool.m4-2845- # gcc leaves a trailing carriage return which upsets mingw
clustalo-1.2.4/m4/libtool.m4:2846: ac_prog=`($CC -print-prog-name=ld) 2>&5 | tr -d '\015'` ;;
clustalo-1.2.4/m4/libtool.m4-2847- *)
clustalo-1.2.4/m4/libtool.m4:2848: ac_prog=`($CC -print-prog-name=ld) 2>&5` ;;
clustalo-1.2.4/m4/libtool.m4-2849- esac
##############################################
clustalo-1.2.4/m4/libtool.m4-2854- # Canonicalize the pathname of ld
clustalo-1.2.4/m4/libtool.m4:2855: ac_prog=`$ECHO "$ac_prog"| $SED 's%\\\\%/%g'`
clustalo-1.2.4/m4/libtool.m4-2856- while $ECHO "$ac_prog" | $GREP "$re_direlt" > /dev/null 2>&1; do
clustalo-1.2.4/m4/libtool.m4:2857: ac_prog=`$ECHO $ac_prog| $SED "s%$re_direlt%/%"`
clustalo-1.2.4/m4/libtool.m4-2858- done
##############################################
clustalo-1.2.4/m4/libtool.m4-2885- # Break only if it was the GNU/non-GNU ld that we prefer.
clustalo-1.2.4/m4/libtool.m4:2886: case `"$lt_cv_path_LD" -v 2>&1 </dev/null` in
clustalo-1.2.4/m4/libtool.m4-2887- *GNU* | *'with BFD'*)
##############################################
clustalo-1.2.4/m4/libtool.m4-2925-[# I'd rather use --version here, but apparently some GNU lds only accept -v.
clustalo-1.2.4/m4/libtool.m4:2926:case `$LD -v 2>&1 </dev/null` in
clustalo-1.2.4/m4/libtool.m4-2927-*GNU* | *'with BFD'*)
##############################################
clustalo-1.2.4/m4/libtool.m4-3109-openbsd*)
clustalo-1.2.4/m4/libtool.m4:3110: if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then
clustalo-1.2.4/m4/libtool.m4-3111- lt_cv_deplibs_check_method='match_pattern /lib[[^/]]+(\.so\.[[0-9]]+\.[[0-9]]+|\.so|_pic\.a)$'
##############################################
clustalo-1.2.4/m4/libtool.m4-3200- # Tru64's nm complains that /dev/null is an invalid object file
clustalo-1.2.4/m4/libtool.m4:3201: case `"$tmp_nm" -B /dev/null 2>&1 | sed '1q'` in
clustalo-1.2.4/m4/libtool.m4-3202- */dev/null* | *'Invalid file or object type'*)
##############################################
clustalo-1.2.4/m4/libtool.m4-3206- *)
clustalo-1.2.4/m4/libtool.m4:3207: case `"$tmp_nm" -p /dev/null 2>&1 | sed '1q'` in
clustalo-1.2.4/m4/libtool.m4-3208- */dev/null*)
##############################################
clustalo-1.2.4/m4/libtool.m4-3371-# If we're using GNU nm, then use its standard symbol codes.
clustalo-1.2.4/m4/libtool.m4:3372:case `$NM -V 2>&1` in
clustalo-1.2.4/m4/libtool.m4-3373-*GNU* | *'with BFD'*)
##############################################
clustalo-1.2.4/m4/libtool.m4-3389-mingw*)
clustalo-1.2.4/m4/libtool.m4:3390: opt_cr=`$ECHO 'x\{0,1\}' | tr x '\015'` # option cr in regexp
clustalo-1.2.4/m4/libtool.m4-3391- ;;
##############################################
clustalo-1.2.4/m4/libtool.m4-3440- nlist=conftest.nm
clustalo-1.2.4/m4/libtool.m4:3441: if AC_TRY_EVAL(NM conftest.$ac_objext \| $lt_cv_sys_global_symbol_pipe \> $nlist) && test -s "$nlist"; then
clustalo-1.2.4/m4/libtool.m4-3442- # Try sorting and uniquifying the output.
##############################################
clustalo-1.2.4/m4/libtool.m4-3747- *)
clustalo-1.2.4/m4/libtool.m4:3748: case `$CC -V 2>&1 | sed 5q` in
clustalo-1.2.4/m4/libtool.m4-3749- *Sun\ C*)
##############################################
clustalo-1.2.4/m4/libtool.m4-4031- *)
clustalo-1.2.4/m4/libtool.m4:4032: case `$CC -V 2>&1 | sed 5q` in
clustalo-1.2.4/m4/libtool.m4-4033- *Sun\ C*)
##############################################
clustalo-1.2.4/m4/libtool.m4-4283- supports_anon_versioning=no
clustalo-1.2.4/m4/libtool.m4:4284: case `$LD -v 2>&1` in
clustalo-1.2.4/m4/libtool.m4-4285- *\ [[01]].* | *\ 2.[[0-9]].* | *\ 2.10.*) ;; # catch versions < 2.11
##############################################
clustalo-1.2.4/m4/libtool.m4-4348- # is EXPORTS), use it as is; otherwise, prepend...
clustalo-1.2.4/m4/libtool.m4:4349: _LT_TAGVAR(archive_expsym_cmds, $1)='if test "x`$SED 1q $export_symbols`" = xEXPORTS; then
clustalo-1.2.4/m4/libtool.m4-4350- cp $export_symbols $output_objdir/$soname.def;
##############################################
clustalo-1.2.4/m4/libtool.m4-4371- # time. Moving up from 0x10000000 also allows more sbrk(2) space.
clustalo-1.2.4/m4/libtool.m4:4372: _LT_TAGVAR(archive_cmds, $1)='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib'
clustalo-1.2.4/m4/libtool.m4:4373: _LT_TAGVAR(archive_expsym_cmds, $1)='sed "s,^,_," $export_symbols >$output_objdir/$soname.expsym~$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--retain-symbols-file,$output_objdir/$soname.expsym ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib'
clustalo-1.2.4/m4/libtool.m4-4374- ;;
##############################################
clustalo-1.2.4/m4/libtool.m4-4389- pgcc*) # Portland Group C compiler
clustalo-1.2.4/m4/libtool.m4:4390: _LT_TAGVAR(whole_archive_flag_spec, $1)='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive'
clustalo-1.2.4/m4/libtool.m4-4391- tmp_addflag=' $pic_flag'
##############################################
clustalo-1.2.4/m4/libtool.m4-4393- pgf77* | pgf90* | pgf95*) # Portland Group f77 and f90 compilers
clustalo-1.2.4/m4/libtool.m4:4394: _LT_TAGVAR(whole_archive_flag_spec, $1)='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive'
clustalo-1.2.4/m4/libtool.m4-4395- tmp_addflag=' $pic_flag -Mnomain' ;;
##############################################
clustalo-1.2.4/m4/libtool.m4-4408- esac
clustalo-1.2.4/m4/libtool.m4:4409: case `$CC -V 2>&1 | sed 5q` in
clustalo-1.2.4/m4/libtool.m4-4410- *Sun\ C*) # Sun C 5.9
clustalo-1.2.4/m4/libtool.m4:4411: _LT_TAGVAR(whole_archive_flag_spec, $1)='${wl}--whole-archive`new_convenience=; for conv in $convenience\"\"; do test -z \"$conv\" || new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive'
clustalo-1.2.4/m4/libtool.m4-4412- _LT_TAGVAR(compiler_needs_object, $1)=yes
##############################################
clustalo-1.2.4/m4/libtool.m4-4477- sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX*)
clustalo-1.2.4/m4/libtool.m4:4478: case `$LD -v 2>&1` in
clustalo-1.2.4/m4/libtool.m4-4479- *\ [[01]].* | *\ 2.[[0-9]].* | *\ 2.1[[0-5]].*)
##############################################
clustalo-1.2.4/m4/libtool.m4-4598- # below for broken collect2 doesn't work under 4.3+
clustalo-1.2.4/m4/libtool.m4:4599: collect2name=`${CC} -print-prog-name=collect2`
clustalo-1.2.4/m4/libtool.m4-4600- if test -f "$collect2name" &&
##############################################
clustalo-1.2.4/m4/libtool.m4-4648- _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-blibpath:$libdir:'"$aix_libpath"
clustalo-1.2.4/m4/libtool.m4:4649: _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags `if test "x${allow_undefined_flag}" != "x"; then $ECHO "X${wl}${allow_undefined_flag}" | $Xsed; else :; fi` '"\${wl}$exp_sym_flag:\$export_symbols $shared_flag"
clustalo-1.2.4/m4/libtool.m4-4650- else
##############################################
clustalo-1.2.4/m4/libtool.m4-4703- # FIXME: Setting linknames here is a bad hack.
clustalo-1.2.4/m4/libtool.m4:4704: _LT_TAGVAR(archive_cmds, $1)='$CC -o $lib $libobjs $compiler_flags `$ECHO "X$deplibs" | $Xsed -e '\''s/ -lc$//'\''` -link -dll~linknames='
clustalo-1.2.4/m4/libtool.m4-4705- # The linker will automatically build a .lib file if we build a DLL.
##############################################
clustalo-1.2.4/m4/libtool.m4-4708- _LT_TAGVAR(old_archive_cmds, $1)='lib -OUT:$oldlib$oldobjs$old_deplibs'
clustalo-1.2.4/m4/libtool.m4:4709: _LT_TAGVAR(fix_srcfile_path, $1)='`cygpath -w "$srcfile"`'
clustalo-1.2.4/m4/libtool.m4-4710- _LT_TAGVAR(enable_shared_with_static_runtimes, $1)=yes
##############################################
clustalo-1.2.4/m4/libtool.m4-4838- if test "$GCC" = yes; then
clustalo-1.2.4/m4/libtool.m4:4839: _LT_TAGVAR(archive_cmds, $1)='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
clustalo-1.2.4/m4/libtool.m4-4840- # Try to use the -exported_symbol ld option, if it does not
##############################################
clustalo-1.2.4/m4/libtool.m4-4845- AC_LINK_IFELSE(int foo(void) {},
clustalo-1.2.4/m4/libtool.m4:4846: _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations ${wl}-exports_file ${wl}$export_symbols -o $lib'
clustalo-1.2.4/m4/libtool.m4-4847- )
##############################################
clustalo-1.2.4/m4/libtool.m4-4849- else
clustalo-1.2.4/m4/libtool.m4:4850: _LT_TAGVAR(archive_cmds, $1)='$CC -shared $libobjs $deplibs $compiler_flags -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib'
clustalo-1.2.4/m4/libtool.m4:4851: _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared $libobjs $deplibs $compiler_flags -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -exports_file $export_symbols -o $lib'
clustalo-1.2.4/m4/libtool.m4-4852- fi
##############################################
clustalo-1.2.4/m4/libtool.m4-4886- _LT_TAGVAR(hardcode_direct_absolute, $1)=yes
clustalo-1.2.4/m4/libtool.m4:4887: if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then
clustalo-1.2.4/m4/libtool.m4-4888- _LT_TAGVAR(archive_cmds, $1)='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags'
##############################################
clustalo-1.2.4/m4/libtool.m4-4919- _LT_TAGVAR(allow_undefined_flag, $1)=' ${wl}-expect_unresolved ${wl}\*'
clustalo-1.2.4/m4/libtool.m4:4920: _LT_TAGVAR(archive_cmds, $1)='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
clustalo-1.2.4/m4/libtool.m4-4921- else
clustalo-1.2.4/m4/libtool.m4-4922- _LT_TAGVAR(allow_undefined_flag, $1)=' -expect_unresolved \*'
clustalo-1.2.4/m4/libtool.m4:4923: _LT_TAGVAR(archive_cmds, $1)='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib'
clustalo-1.2.4/m4/libtool.m4-4924- fi
##############################################
clustalo-1.2.4/m4/libtool.m4-4932- _LT_TAGVAR(allow_undefined_flag, $1)=' ${wl}-expect_unresolved ${wl}\*'
clustalo-1.2.4/m4/libtool.m4:4933: _LT_TAGVAR(archive_cmds, $1)='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags ${wl}-msym ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
clustalo-1.2.4/m4/libtool.m4-4934- _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath ${wl}$libdir'
##############################################
clustalo-1.2.4/m4/libtool.m4-4936- _LT_TAGVAR(allow_undefined_flag, $1)=' -expect_unresolved \*'
clustalo-1.2.4/m4/libtool.m4:4937: _LT_TAGVAR(archive_cmds, $1)='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags -msym -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib'
clustalo-1.2.4/m4/libtool.m4:4938: _LT_TAGVAR(archive_expsym_cmds, $1)='for i in `cat $export_symbols`; do printf "%s %s\\n" -exported_symbol "\$i" >> $lib.exp; done; printf "%s\\n" "-hidden">> $lib.exp~
clustalo-1.2.4/m4/libtool.m4:4939: $CC -shared${allow_undefined_flag} ${wl}-input ${wl}$lib.exp $compiler_flags $libobjs $deplibs -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib~$RM $lib.exp'
clustalo-1.2.4/m4/libtool.m4-4940-
##############################################
clustalo-1.2.4/m4/libtool.m4-4955- else
clustalo-1.2.4/m4/libtool.m4:4956: case `$CC -V 2>&1` in
clustalo-1.2.4/m4/libtool.m4-4957- *"Compilers 5.0"*)
##############################################
clustalo-1.2.4/m4/libtool.m4-5147- _LT_TAGVAR(allow_undefined_flag, $1)=
clustalo-1.2.4/m4/libtool.m4:5148: if AC_TRY_EVAL(_LT_TAGVAR(archive_cmds, $1) 2\>\&1 \| $GREP \" -lc \" \>/dev/null 2\>\&1)
clustalo-1.2.4/m4/libtool.m4-5149- then
##############################################
clustalo-1.2.4/m4/libtool.m4-5461- # ancient GNU ld didn't support --whole-archive et. al.
clustalo-1.2.4/m4/libtool.m4:5462: if eval "`$CC -print-prog-name=ld` --help 2>&1" |
clustalo-1.2.4/m4/libtool.m4-5463- $GREP 'no-whole-archive' > /dev/null; then
##############################################
clustalo-1.2.4/m4/libtool.m4-5544- # below for broken collect2 doesn't work under 4.3+
clustalo-1.2.4/m4/libtool.m4:5545: collect2name=`${CC} -print-prog-name=collect2`
clustalo-1.2.4/m4/libtool.m4-5546- if test -f "$collect2name" &&
##############################################
clustalo-1.2.4/m4/libtool.m4-5594-
clustalo-1.2.4/m4/libtool.m4:5595: _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags `if test "x${allow_undefined_flag}" != "x"; then $ECHO "X${wl}${allow_undefined_flag}" | $Xsed; else :; fi` '"\${wl}$exp_sym_flag:\$export_symbols $shared_flag"
clustalo-1.2.4/m4/libtool.m4-5596- else
##############################################
clustalo-1.2.4/m4/libtool.m4-5651- # is EXPORTS), use it as is; otherwise, prepend...
clustalo-1.2.4/m4/libtool.m4:5652: _LT_TAGVAR(archive_expsym_cmds, $1)='if test "x`$SED 1q $export_symbols`" = xEXPORTS; then
clustalo-1.2.4/m4/libtool.m4-5653- cp $export_symbols $output_objdir/$soname.def;
##############################################
clustalo-1.2.4/m4/libtool.m4-5727- # dependencies.
clustalo-1.2.4/m4/libtool.m4:5728: output_verbose_link_cmd='templist=`($CC -b $CFLAGS -v conftest.$objext 2>&1) | $EGREP "\-L"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; $ECHO "X$list" | $Xsed'
clustalo-1.2.4/m4/libtool.m4-5729- ;;
##############################################
clustalo-1.2.4/m4/libtool.m4-5792- # dependencies.
clustalo-1.2.4/m4/libtool.m4:5793: output_verbose_link_cmd='templist=`($CC -b $CFLAGS -v conftest.$objext 2>&1) | $GREP "\-L"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; $ECHO "X$list" | $Xsed'
clustalo-1.2.4/m4/libtool.m4-5794- ;;
##############################################
clustalo-1.2.4/m4/libtool.m4-5828- # time. Moving up from 0x10000000 also allows more sbrk(2) space.
clustalo-1.2.4/m4/libtool.m4:5829: _LT_TAGVAR(archive_cmds, $1)='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib'
clustalo-1.2.4/m4/libtool.m4:5830: _LT_TAGVAR(archive_expsym_cmds, $1)='sed "s,^,_," $export_symbols >$output_objdir/$soname.expsym~$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--retain-symbols-file,$output_objdir/$soname.expsym ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib'
clustalo-1.2.4/m4/libtool.m4-5831- ;;
##############################################
clustalo-1.2.4/m4/libtool.m4-5835- # SGI C++
clustalo-1.2.4/m4/libtool.m4:5836: _LT_TAGVAR(archive_cmds, $1)='$CC -shared -all -multigot $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib'
clustalo-1.2.4/m4/libtool.m4-5837-
##############################################
clustalo-1.2.4/m4/libtool.m4-5846- if test "$with_gnu_ld" = no; then
clustalo-1.2.4/m4/libtool.m4:5847: _LT_TAGVAR(archive_cmds, $1)='$CC -shared -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
clustalo-1.2.4/m4/libtool.m4-5848- else
clustalo-1.2.4/m4/libtool.m4:5849: _LT_TAGVAR(archive_cmds, $1)='$CC -shared -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` -o $lib'
clustalo-1.2.4/m4/libtool.m4-5850- fi
##############################################
clustalo-1.2.4/m4/libtool.m4-5867- # to its proper name (with version) after linking.
clustalo-1.2.4/m4/libtool.m4:5868: _LT_TAGVAR(archive_cmds, $1)='tempext=`echo $shared_ext | $SED -e '\''s/\([[^()0-9A-Za-z{}]]\)/\\\\\1/g'\''`; templib=`echo $lib | $SED -e "s/\${tempext}\..*/.so/"`; $CC $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags --soname $soname -o \$templib; mv \$templib $lib'
clustalo-1.2.4/m4/libtool.m4:5869: _LT_TAGVAR(archive_expsym_cmds, $1)='tempext=`echo $shared_ext | $SED -e '\''s/\([[^()0-9A-Za-z{}]]\)/\\\\\1/g'\''`; templib=`echo $lib | $SED -e "s/\${tempext}\..*/.so/"`; $CC $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags --soname $soname -o \$templib ${wl}-retain-symbols-file,$export_symbols; mv \$templib $lib'
clustalo-1.2.4/m4/libtool.m4-5870- # Commands to make compiler produce verbose output that lists
##############################################
clustalo-1.2.4/m4/libtool.m4-5877- # dependencies.
clustalo-1.2.4/m4/libtool.m4:5878: output_verbose_link_cmd='templist=`$CC $CFLAGS -v conftest.$objext -o libconftest$shared_ext 2>&1 | $GREP "ld"`; rm -f libconftest$shared_ext; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; $ECHO "X$list" | $Xsed'
clustalo-1.2.4/m4/libtool.m4-5879-
##############################################
clustalo-1.2.4/m4/libtool.m4-5892- # earlier do not add the objects themselves.
clustalo-1.2.4/m4/libtool.m4:5893: case `$CC -V 2>&1` in
clustalo-1.2.4/m4/libtool.m4-5894- *"Version 7."*)
##############################################
clustalo-1.2.4/m4/libtool.m4-5913- # Portland Group C++ compiler
clustalo-1.2.4/m4/libtool.m4:5914: case `$CC -V` in
clustalo-1.2.4/m4/libtool.m4-5915- *pgCC\ [[1-5]]* | *pgcpp\ [[1-5]]*)
##############################################
clustalo-1.2.4/m4/libtool.m4-5918- $CC --prelink_objects --instantiation_dir $tpldir $objs $libobjs $compile_deplibs~
clustalo-1.2.4/m4/libtool.m4:5919: compile_command="$compile_command `find $tpldir -name \*.o | $NL2SP`"'
clustalo-1.2.4/m4/libtool.m4-5920- _LT_TAGVAR(old_archive_cmds, $1)='tpldir=Template.dir~
##############################################
clustalo-1.2.4/m4/libtool.m4-5922- $CC --prelink_objects --instantiation_dir $tpldir $oldobjs$old_deplibs~
clustalo-1.2.4/m4/libtool.m4:5923: $AR $AR_FLAGS $oldlib$oldobjs$old_deplibs `find $tpldir -name \*.o | $NL2SP`~
clustalo-1.2.4/m4/libtool.m4-5924- $RANLIB $oldlib'
##############################################
clustalo-1.2.4/m4/libtool.m4-5927- $CC --prelink_objects --instantiation_dir $tpldir $predep_objects $libobjs $deplibs $convenience $postdep_objects~
clustalo-1.2.4/m4/libtool.m4:5928: $CC -shared $pic_flag $predep_objects $libobjs $deplibs `find $tpldir -name \*.o | $NL2SP` $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname -o $lib'
clustalo-1.2.4/m4/libtool.m4-5929- _LT_TAGVAR(archive_expsym_cmds, $1)='tpldir=Template.dir~
##############################################
clustalo-1.2.4/m4/libtool.m4-5931- $CC --prelink_objects --instantiation_dir $tpldir $predep_objects $libobjs $deplibs $convenience $postdep_objects~
clustalo-1.2.4/m4/libtool.m4:5932: $CC -shared $pic_flag $predep_objects $libobjs $deplibs `find $tpldir -name \*.o | $NL2SP` $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname ${wl}-retain-symbols-file ${wl}$export_symbols -o $lib'
clustalo-1.2.4/m4/libtool.m4-5933- ;;
##############################################
clustalo-1.2.4/m4/libtool.m4-5941- _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}--export-dynamic'
clustalo-1.2.4/m4/libtool.m4:5942: _LT_TAGVAR(whole_archive_flag_spec, $1)='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive'
clustalo-1.2.4/m4/libtool.m4-5943- ;;
##############################################
clustalo-1.2.4/m4/libtool.m4-5960- # dependencies.
clustalo-1.2.4/m4/libtool.m4:5961: output_verbose_link_cmd='templist=`$CC -shared $CFLAGS -v conftest.$objext 2>&1 | $GREP "ld"`; templist=`$ECHO "X$templist" | $Xsed -e "s/\(^.*ld.*\)\( .*ld .*$\)/\1/"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; $ECHO "X$list" | $Xsed'
clustalo-1.2.4/m4/libtool.m4-5962- ;;
##############################################
clustalo-1.2.4/m4/libtool.m4-5975- *)
clustalo-1.2.4/m4/libtool.m4:5976: case `$CC -V 2>&1 | sed 5q` in
clustalo-1.2.4/m4/libtool.m4-5977- *Sun\ C*)
##############################################
clustalo-1.2.4/m4/libtool.m4-5982- _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-R$libdir'
clustalo-1.2.4/m4/libtool.m4:5983: _LT_TAGVAR(whole_archive_flag_spec, $1)='${wl}--whole-archive`new_convenience=; for conv in $convenience\"\"; do test -z \"$conv\" || new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive'
clustalo-1.2.4/m4/libtool.m4-5984- _LT_TAGVAR(compiler_needs_object, $1)=yes
##############################################
clustalo-1.2.4/m4/libtool.m4-6052- _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath,$libdir'
clustalo-1.2.4/m4/libtool.m4:6053: if test -z "`echo __ELF__ | $CC -E - | grep __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then
clustalo-1.2.4/m4/libtool.m4-6054- _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-retain-symbols-file,$export_symbols -o $lib'
##############################################
clustalo-1.2.4/m4/libtool.m4-6071- # to its proper name (with version) after linking.
clustalo-1.2.4/m4/libtool.m4:6072: _LT_TAGVAR(archive_cmds, $1)='tempext=`echo $shared_ext | $SED -e '\''s/\([[^()0-9A-Za-z{}]]\)/\\\\\1/g'\''`; templib=`echo "$lib" | $SED -e "s/\${tempext}\..*/.so/"`; $CC $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags --soname $soname -o \$templib; mv \$templib $lib'
clustalo-1.2.4/m4/libtool.m4-6073-
##############################################
clustalo-1.2.4/m4/libtool.m4-6092- _LT_TAGVAR(allow_undefined_flag, $1)=' ${wl}-expect_unresolved ${wl}\*'
clustalo-1.2.4/m4/libtool.m4:6093: _LT_TAGVAR(archive_cmds, $1)='$CC -shared${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $soname `test -n "$verstring" && $ECHO "X${wl}-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib'
clustalo-1.2.4/m4/libtool.m4-6094- _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath ${wl}$libdir'
##############################################
clustalo-1.2.4/m4/libtool.m4-6097- _LT_TAGVAR(allow_undefined_flag, $1)=' -expect_unresolved \*'
clustalo-1.2.4/m4/libtool.m4:6098: _LT_TAGVAR(archive_cmds, $1)='$CC -shared${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -msym -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib'
clustalo-1.2.4/m4/libtool.m4:6099: _LT_TAGVAR(archive_expsym_cmds, $1)='for i in `cat $export_symbols`; do printf "%s %s\\n" -exported_symbol "\$i" >> $lib.exp; done~
clustalo-1.2.4/m4/libtool.m4-6100- echo "-hidden">> $lib.exp~
clustalo-1.2.4/m4/libtool.m4:6101: $CC -shared$allow_undefined_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -msym -soname $soname ${wl}-input ${wl}$lib.exp `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib~
clustalo-1.2.4/m4/libtool.m4-6102- $RM $lib.exp'
##############################################
clustalo-1.2.4/m4/libtool.m4-6116- # dependencies.
clustalo-1.2.4/m4/libtool.m4:6117: output_verbose_link_cmd='templist=`$CC -shared $CFLAGS -v conftest.$objext 2>&1 | $GREP "ld" | $GREP -v "ld:"`; templist=`$ECHO "X$templist" | $Xsed -e "s/\(^.*ld.*\)\( .*ld.*$\)/\1/"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; $ECHO "X$list" | $Xsed'
clustalo-1.2.4/m4/libtool.m4-6118- ;;
##############################################
clustalo-1.2.4/m4/libtool.m4-6123- osf3*)
clustalo-1.2.4/m4/libtool.m4:6124: _LT_TAGVAR(archive_cmds, $1)='$CC -shared -nostdlib ${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
clustalo-1.2.4/m4/libtool.m4-6125- ;;
clustalo-1.2.4/m4/libtool.m4-6126- *)
clustalo-1.2.4/m4/libtool.m4:6127: _LT_TAGVAR(archive_cmds, $1)='$CC -shared -nostdlib ${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-msym ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
clustalo-1.2.4/m4/libtool.m4-6128- ;;
##############################################
clustalo-1.2.4/m4/libtool.m4-6422-
clustalo-1.2.4/m4/libtool.m4:6423: for p in `eval "$output_verbose_link_cmd"`; do
clustalo-1.2.4/m4/libtool.m4-6424- case $p in
##############################################
clustalo-1.2.4/m4/libtool.m4-6508-linux*)
clustalo-1.2.4/m4/libtool.m4:6509: case `$CC -V 2>&1 | sed 5q` in
clustalo-1.2.4/m4/libtool.m4-6510- *Sun\ C*)
##############################################
clustalo-1.2.4/m4/libtool.m4-6559-if test -n "${_LT_TAGVAR(compiler_lib_search_path, $1)}"; then
clustalo-1.2.4/m4/libtool.m4:6560: _LT_TAGVAR(compiler_lib_search_dirs, $1)=`echo " ${_LT_TAGVAR(compiler_lib_search_path, $1)}" | ${SED} -e 's! -L! !g' -e 's!^ !!'`
clustalo-1.2.4/m4/libtool.m4-6561-fi
##############################################
clustalo-1.2.4/m4/libtool.m4-7099- test $lt_ac_count -gt 10 && break
clustalo-1.2.4/m4/libtool.m4:7100: lt_ac_count=`expr $lt_ac_count + 1`
clustalo-1.2.4/m4/libtool.m4-7101- if test $lt_ac_count -gt $lt_ac_max; then
##############################################
clustalo-1.2.4/m4/libtool.m4-7274- # Extract subdirectory from the argument.
clustalo-1.2.4/m4/libtool.m4:7275: func_dirname_result=`$ECHO "X${1}" | $Xsed -e "$dirname"`
clustalo-1.2.4/m4/libtool.m4-7276- if test "X$func_dirname_result" = "X${1}"; then
##############################################
clustalo-1.2.4/m4/libtool.m4-7285-{
clustalo-1.2.4/m4/libtool.m4:7286: func_basename_result=`$ECHO "X${1}" | $Xsed -e "$basename"`
clustalo-1.2.4/m4/libtool.m4-7287-}
##############################################
clustalo-1.2.4/m4/libtool.m4-7315-{
clustalo-1.2.4/m4/libtool.m4:7316: func_opt_split_opt=`$ECHO "X${1}" | $Xsed -e "$my_sed_long_opt"`
clustalo-1.2.4/m4/libtool.m4:7317: func_opt_split_arg=`$ECHO "X${1}" | $Xsed -e "$my_sed_long_arg"`
clustalo-1.2.4/m4/libtool.m4-7318-}
##############################################
clustalo-1.2.4/m4/libtool.m4-7322-{
clustalo-1.2.4/m4/libtool.m4:7323: func_lo2o_result=`$ECHO "X${1}" | $Xsed -e "$lo2o"`
clustalo-1.2.4/m4/libtool.m4-7324-}
##############################################
clustalo-1.2.4/m4/libtool.m4-7328-{
clustalo-1.2.4/m4/libtool.m4:7329: func_xform_result=`$ECHO "X${1}" | $Xsed -e 's/\.[[^.]]*$/.lo/'`
clustalo-1.2.4/m4/libtool.m4-7330-}
##############################################
clustalo-1.2.4/m4/libtool.m4-7334-{
clustalo-1.2.4/m4/libtool.m4:7335: func_arith_result=`expr "$[@]"`
clustalo-1.2.4/m4/libtool.m4-7336-}
##############################################
clustalo-1.2.4/m4/libtool.m4-7341-{
clustalo-1.2.4/m4/libtool.m4:7342: func_len_result=`expr "$[1]" : ".*" 2>/dev/null || echo $max_cmd_len`
clustalo-1.2.4/m4/libtool.m4-7343-}
##############################################
clustalo-1.2.4/m4/ax_prefix_config_h.m4-135-m4_pushdef([_symbol],[m4_cr_Letters[]m4_cr_digits[]_])dnl
clustalo-1.2.4/m4/ax_prefix_config_h.m4:136:_OUT=`echo ifelse($1, , $PACKAGE-config.h, $1)`
clustalo-1.2.4/m4/ax_prefix_config_h.m4:137:_DEF=`echo _$_OUT | sed -e "y:m4_cr_letters:m4_cr_LETTERS[]:" -e "s/@<:@^m4_cr_Letters@:>@/_/g"`
clustalo-1.2.4/m4/ax_prefix_config_h.m4:138:_PKG=`echo ifelse($2, , $PACKAGE, $2)`
clustalo-1.2.4/m4/ax_prefix_config_h.m4:139:_LOW=`echo _$_PKG | sed -e "y:m4_cr_LETTERS-:m4_cr_letters[]_:"`
clustalo-1.2.4/m4/ax_prefix_config_h.m4:140:_UPP=`echo $_PKG | sed -e "y:m4_cr_letters-:m4_cr_LETTERS[]_:" -e "/^@<:@m4_cr_digits@:>@/s/^/_/"`
clustalo-1.2.4/m4/ax_prefix_config_h.m4:141:_INP=`echo "ifelse($3,,,$3)" | sed -e 's/ *//'`
clustalo-1.2.4/m4/ax_prefix_config_h.m4-142-if test ".$_INP" = "."; then
##############################################
clustalo-1.2.4/m4/ax_prefix_config_h.m4-152- case "$_OUT" in
clustalo-1.2.4/m4/ax_prefix_config_h.m4:153: */*) _INP=`basename "$_OUT"`
clustalo-1.2.4/m4/ax_prefix_config_h.m4-154- ;;
clustalo-1.2.4/m4/ax_prefix_config_h.m4:155: *-*) _INP=`echo "$_OUT" | sed -e "s/@<:@_symbol@:>@*-//"`
clustalo-1.2.4/m4/ax_prefix_config_h.m4-156- ;;
##############################################
clustalo-1.2.4/m4/ax_prefix_config_h.m4-189- else
clustalo-1.2.4/m4/ax_prefix_config_h.m4:190: ac_dir=`AS_DIRNAME(["$_OUT"])`
clustalo-1.2.4/m4/ax_prefix_config_h.m4-191- AS_MKDIR_P(["$ac_dir"])
##############################################
clustalo-1.2.4/m4/ltsugar.m4-67-m4_define([lt_combine],
clustalo-1.2.4/m4/ltsugar.m4:68:[m4_if(m4_eval([$# > 3]), [1],
clustalo-1.2.4/m4/ltsugar.m4-69- [m4_pushdef([_Lt_sep], [m4_define([_Lt_sep], m4_defn([lt_car]))])]]dnl
##############################################
clustalo-1.2.4/configure-48-as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo$as_echo
clustalo-1.2.4/configure:49:if (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
clustalo-1.2.4/configure-50- as_echo='printf %s\n'
##############################################
clustalo-1.2.4/configure-52-else
clustalo-1.2.4/configure:53: if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then
clustalo-1.2.4/configure-54- as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"'
##############################################
clustalo-1.2.4/configure-62- expr "X$arg" : "X\\(.*\\)$as_nl";
clustalo-1.2.4/configure:63: arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
clustalo-1.2.4/configure-64- esac;
##############################################
clustalo-1.2.4/configure-236- test \"x\$as_lineno_1\" != \"x\$as_lineno_2\" &&
clustalo-1.2.4/configure:237: test \"x\`expr \$as_lineno_1 + 1\`\" = \"x\$as_lineno_2\") || { (exit 1); exit 1; }
clustalo-1.2.4/configure-238-") 2> /dev/null; then
##############################################
clustalo-1.2.4/configure-351- test "x$as_lineno_1" != "x$as_lineno_2" &&
clustalo-1.2.4/configure:352: test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2") || { (exit 1); exit 1; }
clustalo-1.2.4/configure-353-
##############################################
clustalo-1.2.4/configure-447- test "x$as_lineno_1" != "x$as_lineno_2" &&
clustalo-1.2.4/configure:448: test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2" || {
clustalo-1.2.4/configure-449-
##############################################
clustalo-1.2.4/configure-560- esac;
clustalo-1.2.4/configure:561: case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in
clustalo-1.2.4/configure-562- ???[sx]*):;;*)false;;esac;fi
##############################################
clustalo-1.2.4/configure-582- # Remove one level of quotation (which was required for Make).
clustalo-1.2.4/configure:583: ECHO=`echo "$lt_ECHO" | sed 's,\\\\\$\\$0,'$0','`
clustalo-1.2.4/configure-584- ;;
##############################################
clustalo-1.2.4/configure-593- :
clustalo-1.2.4/configure:594:elif test "X`{ $ECHO '\t'; } 2>/dev/null`" = 'X\t' ; then
clustalo-1.2.4/configure-595- # Yippee, $ECHO works!
##############################################
clustalo-1.2.4/configure-619- # expected sizes: less than 2Kb, 1Kb, 512 bytes, 16 bytes, ...
clustalo-1.2.4/configure:620: if { echo_test_string=`eval $cmd`; } 2>/dev/null &&
clustalo-1.2.4/configure-621- { test "X$echo_test_string" = "X$echo_test_string"; } 2>/dev/null
##############################################
clustalo-1.2.4/configure-627-
clustalo-1.2.4/configure:628: if test "X`{ $ECHO '\t'; } 2>/dev/null`" = 'X\t' &&
clustalo-1.2.4/configure:629: echo_testing_string=`{ $ECHO "$echo_test_string"; } 2>/dev/null` &&
clustalo-1.2.4/configure-630- test "X$echo_testing_string" = "X$echo_test_string"; then
##############################################
clustalo-1.2.4/configure-642- if (test -f $dir/echo || test -f $dir/echo$ac_exeext) &&
clustalo-1.2.4/configure:643: test "X`($dir/echo '\t') 2>/dev/null`" = 'X\t' &&
clustalo-1.2.4/configure:644: echo_testing_string=`($dir/echo "$echo_test_string") 2>/dev/null` &&
clustalo-1.2.4/configure-645- test "X$echo_testing_string" = "X$echo_test_string"; then
##############################################
clustalo-1.2.4/configure-654- if test "X`{ print -r '\t'; } 2>/dev/null`" = 'X\t' &&
clustalo-1.2.4/configure:655: echo_testing_string=`{ print -r "$echo_test_string"; } 2>/dev/null` &&
clustalo-1.2.4/configure-656- test "X$echo_testing_string" = "X$echo_test_string"; then
##############################################
clustalo-1.2.4/configure-669- ECHO='printf %s\n'
clustalo-1.2.4/configure:670: if test "X`{ $ECHO '\t'; } 2>/dev/null`" = 'X\t' &&
clustalo-1.2.4/configure:671: echo_testing_string=`{ $ECHO "$echo_test_string"; } 2>/dev/null` &&
clustalo-1.2.4/configure-672- test "X$echo_testing_string" = "X$echo_test_string"; then
##############################################
clustalo-1.2.4/configure-674- :
clustalo-1.2.4/configure:675: elif echo_testing_string=`($ORIGINAL_CONFIG_SHELL "$0" --fallback-echo '\t') 2>/dev/null` &&
clustalo-1.2.4/configure-676- test "X$echo_testing_string" = 'X\t' &&
clustalo-1.2.4/configure:677: echo_testing_string=`($ORIGINAL_CONFIG_SHELL "$0" --fallback-echo "$echo_test_string") 2>/dev/null` &&
clustalo-1.2.4/configure-678- test "X$echo_testing_string" = "X$echo_test_string"; then
##############################################
clustalo-1.2.4/configure-683- ECHO="$CONFIG_SHELL $0 --fallback-echo"
clustalo-1.2.4/configure:684: elif echo_testing_string=`($CONFIG_SHELL "$0" --fallback-echo '\t') 2>/dev/null` &&
clustalo-1.2.4/configure-685- test "X$echo_testing_string" = 'X\t' &&
clustalo-1.2.4/configure:686: echo_testing_string=`($CONFIG_SHELL "$0" --fallback-echo "$echo_test_string") 2>/dev/null` &&
clustalo-1.2.4/configure-687- test "X$echo_testing_string" = "X$echo_test_string"; then
##############################################
clustalo-1.2.4/configure-693- for cmd in 'echo test' 'sed 2q "$0"' 'sed 10q "$0"' 'sed 20q "$0"' 'sed 50q "$0"'; do
clustalo-1.2.4/configure:694: if { test "X$echo_test_string" = "X`eval $cmd`"; } 2>/dev/null
clustalo-1.2.4/configure-695- then
##############################################
clustalo-1.2.4/configure-701- if test "$prev" != 'sed 50q "$0"'; then
clustalo-1.2.4/configure:702: echo_test_string=`eval $prev`
clustalo-1.2.4/configure-703- export echo_test_string
##############################################
clustalo-1.2.4/configure-995- case $ac_option in
clustalo-1.2.4/configure:996: *=*) ac_optarg=`expr "X$ac_option" : '[^=]*=\(.*\)'` ;;
clustalo-1.2.4/configure-997- *) ac_optarg=yes ;;
##############################################
clustalo-1.2.4/configure-1038- -disable-* | --disable-*)
clustalo-1.2.4/configure:1039: ac_useropt=`expr "x$ac_option" : 'x-*disable-\(.*\)'`
clustalo-1.2.4/configure-1040- # Reject names that are not valid shell variable names.
##############################################
clustalo-1.2.4/configure-1044- ac_useropt_orig=$ac_useropt
clustalo-1.2.4/configure:1045: ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
clustalo-1.2.4/configure-1046- case $ac_user_opts in
##############################################
clustalo-1.2.4/configure-1065- -enable-* | --enable-*)
clustalo-1.2.4/configure:1066: ac_useropt=`expr "x$ac_option" : 'x-*enable-\([^=]*\)'`
clustalo-1.2.4/configure-1067- # Reject names that are not valid shell variable names.
##############################################
clustalo-1.2.4/configure-1071- ac_useropt_orig=$ac_useropt
clustalo-1.2.4/configure:1072: ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
clustalo-1.2.4/configure-1073- case $ac_user_opts in
##############################################
clustalo-1.2.4/configure-1270- -with-* | --with-*)
clustalo-1.2.4/configure:1271: ac_useropt=`expr "x$ac_option" : 'x-*with-\([^=]*\)'`
clustalo-1.2.4/configure-1272- # Reject names that are not valid shell variable names.
##############################################
clustalo-1.2.4/configure-1276- ac_useropt_orig=$ac_useropt
clustalo-1.2.4/configure:1277: ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
clustalo-1.2.4/configure-1278- case $ac_user_opts in
##############################################
clustalo-1.2.4/configure-1287- -without-* | --without-*)
clustalo-1.2.4/configure:1288: ac_useropt=`expr "x$ac_option" : 'x-*without-\(.*\)'`
clustalo-1.2.4/configure-1289- # Reject names that are not valid shell variable names.
##############################################
clustalo-1.2.4/configure-1293- ac_useropt_orig=$ac_useropt
clustalo-1.2.4/configure:1294: ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
clustalo-1.2.4/configure-1295- case $ac_user_opts in
##############################################
clustalo-1.2.4/configure-1327- *=*)
clustalo-1.2.4/configure:1328: ac_envvar=`expr "x$ac_option" : 'x\([^=]*\)='`
clustalo-1.2.4/configure-1329- # Reject names that are not valid shell variable names.
##############################################
clustalo-1.2.4/configure-1347-if test -n "$ac_prev"; then
clustalo-1.2.4/configure:1348: ac_option=--`echo $ac_prev | sed 's/_/-/g'`
clustalo-1.2.4/configure-1349- { $as_echo "$as_me: error: missing argument to $ac_option" >&2
##############################################
clustalo-1.2.4/configure-1371- */ )
clustalo-1.2.4/configure:1372: ac_val=`expr "X$ac_val" : 'X\(.*[^/]\)' \| "X$ac_val" : 'X\(.*\)'`
clustalo-1.2.4/configure-1373- eval $ac_var=\$ac_val;;
##############################################
clustalo-1.2.4/configure-1409-ac_ls_di=`ls -di .` &&
clustalo-1.2.4/configure:1410:ac_pwd_ls_di=`cd "$ac_pwd" && ls -di .` ||
clustalo-1.2.4/configure-1411- { $as_echo "$as_me: error: working directory cannot be determined" >&2
##############################################
clustalo-1.2.4/configure-1469-case $srcdir in
clustalo-1.2.4/configure:1470:*/) srcdir=`expr "X$srcdir" : 'X\(.*[^/]\)' \| "X$srcdir" : 'X\(.*\)'`;;
clustalo-1.2.4/configure-1471-esac
##############################################
clustalo-1.2.4/configure-1512-By default, \`make install' will install all the files in
clustalo-1.2.4/configure:1513:\`$ac_default_prefix/bin', \`$ac_default_prefix/lib' etc. You can specify
clustalo-1.2.4/configure:1514:an installation prefix other than \`$ac_default_prefix' using \`--prefix',
clustalo-1.2.4/configure-1515-for instance \`--prefix=\$HOME'.
##############################################
clustalo-1.2.4/configure-1614-*)
clustalo-1.2.4/configure:1615: ac_dir_suffix=/`$as_echo "$ac_dir" | sed 's|^\.[\\/]||'`
clustalo-1.2.4/configure-1616- # A ".." for each directory in $ac_dir_suffix.
clustalo-1.2.4/configure:1617: ac_top_builddir_sub=`$as_echo "$ac_dir_suffix" | sed 's|/[^\\/]*|/..|g;s|/||'`
clustalo-1.2.4/configure-1618- case $ac_top_builddir_sub in
##############################################
clustalo-1.2.4/configure-1747- *\'*)
clustalo-1.2.4/configure:1748: ac_arg=`$as_echo "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;;
clustalo-1.2.4/configure-1749- esac
##############################################
clustalo-1.2.4/configure-1834- case $ac_val in
clustalo-1.2.4/configure:1835: *\'\''*) ac_val=`$as_echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
clustalo-1.2.4/configure-1836- esac
##############################################
clustalo-1.2.4/configure-1851- case $ac_val in
clustalo-1.2.4/configure:1852: *\'\''*) ac_val=`$as_echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
clustalo-1.2.4/configure-1853- esac
##############################################
clustalo-1.2.4/configure-1962- set,)
clustalo-1.2.4/configure:1963: { $as_echo "$as_me:$LINENO: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&5
clustalo-1.2.4/configure:1964:$as_echo "$as_me: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&2;}
clustalo-1.2.4/configure-1965- ac_cache_corrupted=: ;;
##############################################
clustalo-1.2.4/configure-1973- # differences in whitespace do not lead to failure.
clustalo-1.2.4/configure:1974: ac_old_val_w=`echo x $ac_old_val`
clustalo-1.2.4/configure:1975: ac_new_val_w=`echo x $ac_new_val`
clustalo-1.2.4/configure-1976- if test "$ac_old_val_w" != "$ac_new_val_w"; then
##############################################
clustalo-1.2.4/configure-1993- case $ac_new_val in
clustalo-1.2.4/configure:1994: *\'*) ac_arg=$ac_var=`$as_echo "$ac_new_val" | sed "s/'/'\\\\\\\\''/g"` ;;
clustalo-1.2.4/configure-1995- *) ac_arg=$ac_var=$ac_new_val ;;
##############################################
clustalo-1.2.4/configure-2283-if (
clustalo-1.2.4/configure:2284: set X `ls -Lt $srcdir/configure conftest.file 2> /dev/null`
clustalo-1.2.4/configure-2285- if test "$*" = "X"; then
clustalo-1.2.4/configure-2286- # -L didn't work.
clustalo-1.2.4/configure:2287: set X `ls -t $srcdir/configure conftest.file`
clustalo-1.2.4/configure-2288- fi
##############################################
clustalo-1.2.4/configure-2325-ac_script='s/[\\$]/&&/g;s/;s,x,x,$//'
clustalo-1.2.4/configure:2326:program_transform_name=`$as_echo "$program_transform_name" | sed "$ac_script"`
clustalo-1.2.4/configure-2327-
clustalo-1.2.4/configure-2328-# expand $ac_aux_dir to an absolute path
clustalo-1.2.4/configure:2329:am_aux_dir=`cd $ac_aux_dir && pwd`
clustalo-1.2.4/configure-2330-
##############################################
clustalo-1.2.4/configure-2354- { test -f "$as_dir/$ac_prog$ac_exec_ext" && $as_test_x "$as_dir/$ac_prog$ac_exec_ext"; } || continue
clustalo-1.2.4/configure:2355: case `"$as_dir/$ac_prog$ac_exec_ext" --version 2>&1` in #(
clustalo-1.2.4/configure-2356- 'mkdir (GNU coreutils) '* | \
##############################################
clustalo-1.2.4/configure-2433-set x ${MAKE-make}
clustalo-1.2.4/configure:2434:ac_make=`$as_echo "$2" | sed 's/+/p/g; s/[^a-zA-Z0-9_]/_/g'`
clustalo-1.2.4/configure-2435-if { as_var=ac_cv_prog_make_${ac_make}_set; eval "test \"\${$as_var+set}\" = set"; }; then
##############################################
clustalo-1.2.4/configure-2443-# GNU make sometimes prints "make[1]: Entering...", which would confuse us.
clustalo-1.2.4/configure:2444:case `${MAKE-make} -f conftest.make 2>/dev/null` in
clustalo-1.2.4/configure-2445- *@@@%%%=?*=@@@%%%*)
##############################################
clustalo-1.2.4/configure-2470-
clustalo-1.2.4/configure:2471:if test "`cd $srcdir && pwd`" != "`pwd`"; then
clustalo-1.2.4/configure-2472- # Use -I$(srcdir) only when $(srcdir) != ., so that make's output
##############################################
clustalo-1.2.4/configure-2680-# case it prints its new name instead of `make'.
clustalo-1.2.4/configure:2681:if test "`$am_make -s -f confmf 2> /dev/null | grep -v 'ing directory'`" = "done"; then
clustalo-1.2.4/configure-2682- am__include=include
##############################################
clustalo-1.2.4/configure-2688- echo '.include "confinc"' > confmf
clustalo-1.2.4/configure:2689: if test "`$am_make -s -f confmf 2> /dev/null`" = "done"; then
clustalo-1.2.4/configure-2690- am__include=.include
##############################################
clustalo-1.2.4/configure-3084-$as_echo_n "checking for C compiler default output file name... " >&6; }
clustalo-1.2.4/configure:3085:ac_link_default=`$as_echo "$ac_link" | sed 's/ -o *conftest[^ ]*//'`
clustalo-1.2.4/configure-3086-
##############################################
clustalo-1.2.4/configure-3128- then :; else
clustalo-1.2.4/configure:3129: ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
clustalo-1.2.4/configure-3130- fi
##############################################
clustalo-1.2.4/configure-3231- *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) ;;
clustalo-1.2.4/configure:3232: *.* ) ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
clustalo-1.2.4/configure-3233- break;;
##############################################
clustalo-1.2.4/configure-3289- *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM ) ;;
clustalo-1.2.4/configure:3290: *) ac_cv_objext=`expr "$ac_file" : '.*\.\(.*\)'`
clustalo-1.2.4/configure-3291- break;;
##############################################
clustalo-1.2.4/configure-3679- if test "$am_compiler_list" = ""; then
clustalo-1.2.4/configure:3680: am_compiler_list=`sed -n 's/^#*\([a-zA-Z0-9]*\))$/\1/p' < ./depcomp`
clustalo-1.2.4/configure-3681- fi
##############################################
clustalo-1.2.4/configure-4016- # Check for GNU $ac_path_GREP
clustalo-1.2.4/configure:4017:case `"$ac_path_GREP" --version 2>&1` in
clustalo-1.2.4/configure-4018-*GNU*)
##############################################
clustalo-1.2.4/configure-4030- diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break
clustalo-1.2.4/configure:4031: ac_count=`expr $ac_count + 1`
clustalo-1.2.4/configure-4032- if test $ac_count -gt ${ac_path_GREP_max-0}; then
##############################################
clustalo-1.2.4/configure-4084- # Check for GNU $ac_path_EGREP
clustalo-1.2.4/configure:4085:case `"$ac_path_EGREP" --version 2>&1` in
clustalo-1.2.4/configure-4086-*GNU*)
##############################################
clustalo-1.2.4/configure-4098- diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break
clustalo-1.2.4/configure:4099: ac_count=`expr $ac_count + 1`
clustalo-1.2.4/configure-4100- if test $ac_count -gt ${ac_path_EGREP_max-0}; then
##############################################
clustalo-1.2.4/configure-4322-do
clustalo-1.2.4/configure:4323:as_ac_Header=`$as_echo "ac_cv_header_$ac_header" | $as_tr_sh`
clustalo-1.2.4/configure-4324-{ $as_echo "$as_me:$LINENO: checking for $ac_header" >&5
##############################################
clustalo-1.2.4/configure-4374- cat >>confdefs.h <<_ACEOF
clustalo-1.2.4/configure:4375:#define `$as_echo "HAVE_$ac_header" | $as_tr_cpp` 1
clustalo-1.2.4/configure-4376-_ACEOF
##############################################
clustalo-1.2.4/configure-4633-test "x$ac_build_alias" = x &&
clustalo-1.2.4/configure:4634: ac_build_alias=`$SHELL "$ac_aux_dir/config.guess"`
clustalo-1.2.4/configure-4635-test "x$ac_build_alias" = x &&
##############################################
clustalo-1.2.4/configure-4638- { (exit 1); exit 1; }; }
clustalo-1.2.4/configure:4639:ac_cv_build=`$SHELL "$ac_aux_dir/config.sub" $ac_build_alias` ||
clustalo-1.2.4/configure-4640- { { $as_echo "$as_me:$LINENO: error: $SHELL $ac_aux_dir/config.sub $ac_build_alias failed" >&5
##############################################
clustalo-1.2.4/configure-4663-IFS=$ac_save_IFS
clustalo-1.2.4/configure:4664:case $build_os in *\ *) build_os=`echo "$build_os" | sed 's/ /-/g'`;; esac
clustalo-1.2.4/configure-4665-
##############################################
clustalo-1.2.4/configure-4674-else
clustalo-1.2.4/configure:4675: ac_cv_host=`$SHELL "$ac_aux_dir/config.sub" $host_alias` ||
clustalo-1.2.4/configure-4676- { { $as_echo "$as_me:$LINENO: error: $SHELL $ac_aux_dir/config.sub $host_alias failed" >&5
##############################################
clustalo-1.2.4/configure-4700-IFS=$ac_save_IFS
clustalo-1.2.4/configure:4701:case $host_os in *\ *) host_os=`echo "$host_os" | sed 's/ /-/g'`;; esac
clustalo-1.2.4/configure-4702-
##############################################
clustalo-1.2.4/configure-4710-set x ${MAKE-make}
clustalo-1.2.4/configure:4711:ac_make=`$as_echo "$2" | sed 's/+/p/g; s/[^a-zA-Z0-9_]/_/g'`
clustalo-1.2.4/configure-4712-if { as_var=ac_cv_prog_make_${ac_make}_set; eval "test \"\${$as_var+set}\" = set"; }; then
##############################################
clustalo-1.2.4/configure-4720-# GNU make sometimes prints "make[1]: Entering...", which would confuse us.
clustalo-1.2.4/configure:4721:case `${MAKE-make} -f conftest.make 2>/dev/null` in
clustalo-1.2.4/configure-4722- *@@@%%%=?*=@@@%%%*)
##############################################
clustalo-1.2.4/configure-4794- # Check for GNU $ac_path_SED
clustalo-1.2.4/configure:4795:case `"$ac_path_SED" --version 2>&1` in
clustalo-1.2.4/configure-4796-*GNU*)
##############################################
clustalo-1.2.4/configure-4808- diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break
clustalo-1.2.4/configure:4809: ac_count=`expr $ac_count + 1`
clustalo-1.2.4/configure-4810- if test $ac_count -gt ${ac_path_SED_max-0}; then
##############################################
clustalo-1.2.4/configure-4875- # Check for GNU $ac_path_FGREP
clustalo-1.2.4/configure:4876:case `"$ac_path_FGREP" --version 2>&1` in
clustalo-1.2.4/configure-4877-*GNU*)
##############################################
clustalo-1.2.4/configure-4889- diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break
clustalo-1.2.4/configure:4890: ac_count=`expr $ac_count + 1`
clustalo-1.2.4/configure-4891- if test $ac_count -gt ${ac_path_FGREP_max-0}; then
##############################################
clustalo-1.2.4/configure-4957- # gcc leaves a trailing carriage return which upsets mingw
clustalo-1.2.4/configure:4958: ac_prog=`($CC -print-prog-name=ld) 2>&5 | tr -d '\015'` ;;
clustalo-1.2.4/configure-4959- *)
clustalo-1.2.4/configure:4960: ac_prog=`($CC -print-prog-name=ld) 2>&5` ;;
clustalo-1.2.4/configure-4961- esac
##############################################
clustalo-1.2.4/configure-4966- # Canonicalize the pathname of ld
clustalo-1.2.4/configure:4967: ac_prog=`$ECHO "$ac_prog"| $SED 's%\\\\%/%g'`
clustalo-1.2.4/configure-4968- while $ECHO "$ac_prog" | $GREP "$re_direlt" > /dev/null 2>&1; do
clustalo-1.2.4/configure:4969: ac_prog=`$ECHO $ac_prog| $SED "s%$re_direlt%/%"`
clustalo-1.2.4/configure-4970- done
##############################################
clustalo-1.2.4/configure-5001- # Break only if it was the GNU/non-GNU ld that we prefer.
clustalo-1.2.4/configure:5002: case `"$lt_cv_path_LD" -v 2>&1 </dev/null` in
clustalo-1.2.4/configure-5003- *GNU* | *'with BFD'*)
##############################################
clustalo-1.2.4/configure-5034- # I'd rather use --version here, but apparently some GNU lds only accept -v.
clustalo-1.2.4/configure:5035:case `$LD -v 2>&1 </dev/null` in
clustalo-1.2.4/configure-5036-*GNU* | *'with BFD'*)
##############################################
clustalo-1.2.4/configure-5079- # Tru64's nm complains that /dev/null is an invalid object file
clustalo-1.2.4/configure:5080: case `"$tmp_nm" -B /dev/null 2>&1 | sed '1q'` in
clustalo-1.2.4/configure-5081- */dev/null* | *'Invalid file or object type'*)
##############################################
clustalo-1.2.4/configure-5085- *)
clustalo-1.2.4/configure:5086: case `"$tmp_nm" -p /dev/null 2>&1 | sed '1q'` in
clustalo-1.2.4/configure-5087- */dev/null*)
##############################################
clustalo-1.2.4/configure-5308- # And add a safety zone
clustalo-1.2.4/configure:5309: lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \/ 4`
clustalo-1.2.4/configure:5310: lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \* 3`
clustalo-1.2.4/configure-5311- ;;
##############################################
clustalo-1.2.4/configure-5336- if test -n "$kargmax"; then
clustalo-1.2.4/configure:5337: lt_cv_sys_max_cmd_len=`echo $kargmax | sed 's/.*[ ]//'`
clustalo-1.2.4/configure-5338- else
##############################################
clustalo-1.2.4/configure-5344- if test -n "$lt_cv_sys_max_cmd_len"; then
clustalo-1.2.4/configure:5345: lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \/ 4`
clustalo-1.2.4/configure:5346: lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \* 3`
clustalo-1.2.4/configure-5347- else
##############################################
clustalo-1.2.4/configure-5356- # we can't tell.
clustalo-1.2.4/configure:5357: while { test "X"`$SHELL $0 --fallback-echo "X$teststring$teststring" 2>/dev/null` \
clustalo-1.2.4/configure-5358- = "XX$teststring$teststring"; } >/dev/null 2>&1 &&
##############################################
clustalo-1.2.4/configure-5360- do
clustalo-1.2.4/configure:5361: i=`expr $i + 1`
clustalo-1.2.4/configure-5362- teststring=$teststring$teststring
##############################################
clustalo-1.2.4/configure-5364- # Only check the string length outside the loop.
clustalo-1.2.4/configure:5365: lt_cv_sys_max_cmd_len=`expr "X$teststring" : ".*" 2>&1`
clustalo-1.2.4/configure-5366- teststring=
##############################################
clustalo-1.2.4/configure-5369- # linker. It appears as though 1/2 is a usable value.
clustalo-1.2.4/configure:5370: lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \/ 2`
clustalo-1.2.4/configure-5371- fi
##############################################
clustalo-1.2.4/configure-5724-openbsd*)
clustalo-1.2.4/configure:5725: if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then
clustalo-1.2.4/configure-5726- lt_cv_deplibs_check_method='match_pattern /lib[^/]+(\.so\.[0-9]+\.[0-9]+|\.so|_pic\.a)$'
##############################################
clustalo-1.2.4/configure-6213-# If we're using GNU nm, then use its standard symbol codes.
clustalo-1.2.4/configure:6214:case `$NM -V 2>&1` in
clustalo-1.2.4/configure-6215-*GNU* | *'with BFD'*)
##############################################
clustalo-1.2.4/configure-6231-mingw*)
clustalo-1.2.4/configure:6232: opt_cr=`$ECHO 'x\{0,1\}' | tr x '\015'` # option cr in regexp
clustalo-1.2.4/configure-6233- ;;
##############################################
clustalo-1.2.4/configure-6427- (exit $ac_status); }; then
clustalo-1.2.4/configure:6428: case `/usr/bin/file conftest.$ac_objext` in
clustalo-1.2.4/configure-6429- *ELF-32*)
##############################################
clustalo-1.2.4/configure-6447- if test "$lt_cv_prog_gnu_ld" = yes; then
clustalo-1.2.4/configure:6448: case `/usr/bin/file conftest.$ac_objext` in
clustalo-1.2.4/configure-6449- *32-bit*)
##############################################
clustalo-1.2.4/configure-6459- else
clustalo-1.2.4/configure:6460: case `/usr/bin/file conftest.$ac_objext` in
clustalo-1.2.4/configure-6461- *32-bit*)
##############################################
clustalo-1.2.4/configure-7248-do
clustalo-1.2.4/configure:7249:as_ac_Header=`$as_echo "ac_cv_header_$ac_header" | $as_tr_sh`
clustalo-1.2.4/configure-7250-{ $as_echo "$as_me:$LINENO: checking for $ac_header" >&5
##############################################
clustalo-1.2.4/configure-7300- cat >>confdefs.h <<_ACEOF
clustalo-1.2.4/configure:7301:#define `$as_echo "HAVE_$ac_header" | $as_tr_cpp` 1
clustalo-1.2.4/configure-7302-_ACEOF
##############################################
clustalo-1.2.4/configure-7580-done
clustalo-1.2.4/configure:7581:cc_basename=`$ECHO "X$cc_temp" | $Xsed -e 's%.*/%%' -e "s%^$host_alias-%%"`
clustalo-1.2.4/configure-7582-
##############################################
clustalo-1.2.4/configure-7609- "file_magic "*)
clustalo-1.2.4/configure:7610: file_magic_regex=`expr "$deplibs_check_method" : "file_magic \(.*\)"`
clustalo-1.2.4/configure-7611- MAGIC_CMD="$lt_cv_path_MAGIC_CMD"
##############################################
clustalo-1.2.4/configure-7675- "file_magic "*)
clustalo-1.2.4/configure:7676: file_magic_regex=`expr "$deplibs_check_method" : "file_magic \(.*\)"`
clustalo-1.2.4/configure-7677- MAGIC_CMD="$lt_cv_path_MAGIC_CMD"
##############################################
clustalo-1.2.4/configure-8018- *)
clustalo-1.2.4/configure:8019: case `$CC -V 2>&1 | sed 5q` in
clustalo-1.2.4/configure-8020- *Sun\ C*)
##############################################
clustalo-1.2.4/configure-8354- if test "$hard_links" = no; then
clustalo-1.2.4/configure:8355: { $as_echo "$as_me:$LINENO: WARNING: \`$CC' does not support \`-c -o', so \`make -j' may be unsafe" >&5
clustalo-1.2.4/configure:8356:$as_echo "$as_me: WARNING: \`$CC' does not support \`-c -o', so \`make -j' may be unsafe" >&2;}
clustalo-1.2.4/configure-8357- need_locks=warn
##############################################
clustalo-1.2.4/configure-8447- supports_anon_versioning=no
clustalo-1.2.4/configure:8448: case `$LD -v 2>&1` in
clustalo-1.2.4/configure-8449- *\ [01].* | *\ 2.[0-9].* | *\ 2.10.*) ;; # catch versions < 2.11
##############################################
clustalo-1.2.4/configure-8512- # is EXPORTS), use it as is; otherwise, prepend...
clustalo-1.2.4/configure:8513: archive_expsym_cmds='if test "x`$SED 1q $export_symbols`" = xEXPORTS; then
clustalo-1.2.4/configure-8514- cp $export_symbols $output_objdir/$soname.def;
##############################################
clustalo-1.2.4/configure-8535- # time. Moving up from 0x10000000 also allows more sbrk(2) space.
clustalo-1.2.4/configure:8536: archive_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib'
clustalo-1.2.4/configure:8537: archive_expsym_cmds='sed "s,^,_," $export_symbols >$output_objdir/$soname.expsym~$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--retain-symbols-file,$output_objdir/$soname.expsym ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib'
clustalo-1.2.4/configure-8538- ;;
##############################################
clustalo-1.2.4/configure-8553- pgcc*) # Portland Group C compiler
clustalo-1.2.4/configure:8554: whole_archive_flag_spec='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive'
clustalo-1.2.4/configure-8555- tmp_addflag=' $pic_flag'
##############################################
clustalo-1.2.4/configure-8557- pgf77* | pgf90* | pgf95*) # Portland Group f77 and f90 compilers
clustalo-1.2.4/configure:8558: whole_archive_flag_spec='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive'
clustalo-1.2.4/configure-8559- tmp_addflag=' $pic_flag -Mnomain' ;;
##############################################
clustalo-1.2.4/configure-8572- esac
clustalo-1.2.4/configure:8573: case `$CC -V 2>&1 | sed 5q` in
clustalo-1.2.4/configure-8574- *Sun\ C*) # Sun C 5.9
clustalo-1.2.4/configure:8575: whole_archive_flag_spec='${wl}--whole-archive`new_convenience=; for conv in $convenience\"\"; do test -z \"$conv\" || new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive'
clustalo-1.2.4/configure-8576- compiler_needs_object=yes
##############################################
clustalo-1.2.4/configure-8641- sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX*)
clustalo-1.2.4/configure:8642: case `$LD -v 2>&1` in
clustalo-1.2.4/configure-8643- *\ [01].* | *\ 2.[0-9].* | *\ 2.1[0-5].*)
##############################################
clustalo-1.2.4/configure-8762- # below for broken collect2 doesn't work under 4.3+
clustalo-1.2.4/configure:8763: collect2name=`${CC} -print-prog-name=collect2`
clustalo-1.2.4/configure-8764- if test -f "$collect2name" &&
##############################################
clustalo-1.2.4/configure-8854- }'
clustalo-1.2.4/configure:8855:aix_libpath=`dump -H conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
clustalo-1.2.4/configure-8856-# Check for a 64-bit object if we didn't find anything.
clustalo-1.2.4/configure-8857-if test -z "$aix_libpath"; then
clustalo-1.2.4/configure:8858: aix_libpath=`dump -HX64 conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
clustalo-1.2.4/configure-8859-fi
##############################################
clustalo-1.2.4/configure-8872- hardcode_libdir_flag_spec='${wl}-blibpath:$libdir:'"$aix_libpath"
clustalo-1.2.4/configure:8873: archive_expsym_cmds='$CC -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags `if test "x${allow_undefined_flag}" != "x"; then $ECHO "X${wl}${allow_undefined_flag}" | $Xsed; else :; fi` '"\${wl}$exp_sym_flag:\$export_symbols $shared_flag"
clustalo-1.2.4/configure-8874- else
##############################################
clustalo-1.2.4/configure-8925- }'
clustalo-1.2.4/configure:8926:aix_libpath=`dump -H conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
clustalo-1.2.4/configure-8927-# Check for a 64-bit object if we didn't find anything.
clustalo-1.2.4/configure-8928-if test -z "$aix_libpath"; then
clustalo-1.2.4/configure:8929: aix_libpath=`dump -HX64 conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
clustalo-1.2.4/configure-8930-fi
##############################################
clustalo-1.2.4/configure-8987- # FIXME: Setting linknames here is a bad hack.
clustalo-1.2.4/configure:8988: archive_cmds='$CC -o $lib $libobjs $compiler_flags `$ECHO "X$deplibs" | $Xsed -e '\''s/ -lc$//'\''` -link -dll~linknames='
clustalo-1.2.4/configure-8989- # The linker will automatically build a .lib file if we build a DLL.
##############################################
clustalo-1.2.4/configure-8992- old_archive_cmds='lib -OUT:$oldlib$oldobjs$old_deplibs'
clustalo-1.2.4/configure:8993: fix_srcfile_path='`cygpath -w "$srcfile"`'
clustalo-1.2.4/configure-8994- enable_shared_with_static_runtimes=yes
##############################################
clustalo-1.2.4/configure-9145- if test "$GCC" = yes; then
clustalo-1.2.4/configure:9146: archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
clustalo-1.2.4/configure-9147- # Try to use the -exported_symbol ld option, if it does not
##############################################
clustalo-1.2.4/configure-9175- }; then
clustalo-1.2.4/configure:9176: archive_expsym_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations ${wl}-exports_file ${wl}$export_symbols -o $lib'
clustalo-1.2.4/configure-9177-
##############################################
clustalo-1.2.4/configure-9189- else
clustalo-1.2.4/configure:9190: archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib'
clustalo-1.2.4/configure:9191: archive_expsym_cmds='$CC -shared $libobjs $deplibs $compiler_flags -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -exports_file $export_symbols -o $lib'
clustalo-1.2.4/configure-9192- fi
##############################################
clustalo-1.2.4/configure-9226- hardcode_direct_absolute=yes
clustalo-1.2.4/configure:9227: if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then
clustalo-1.2.4/configure-9228- archive_cmds='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags'
##############################################
clustalo-1.2.4/configure-9259- allow_undefined_flag=' ${wl}-expect_unresolved ${wl}\*'
clustalo-1.2.4/configure:9260: archive_cmds='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
clustalo-1.2.4/configure-9261- else
clustalo-1.2.4/configure-9262- allow_undefined_flag=' -expect_unresolved \*'
clustalo-1.2.4/configure:9263: archive_cmds='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib'
clustalo-1.2.4/configure-9264- fi
##############################################
clustalo-1.2.4/configure-9272- allow_undefined_flag=' ${wl}-expect_unresolved ${wl}\*'
clustalo-1.2.4/configure:9273: archive_cmds='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags ${wl}-msym ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
clustalo-1.2.4/configure-9274- hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir'
##############################################
clustalo-1.2.4/configure-9276- allow_undefined_flag=' -expect_unresolved \*'
clustalo-1.2.4/configure:9277: archive_cmds='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags -msym -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib'
clustalo-1.2.4/configure:9278: archive_expsym_cmds='for i in `cat $export_symbols`; do printf "%s %s\\n" -exported_symbol "\$i" >> $lib.exp; done; printf "%s\\n" "-hidden">> $lib.exp~
clustalo-1.2.4/configure:9279: $CC -shared${allow_undefined_flag} ${wl}-input ${wl}$lib.exp $compiler_flags $libobjs $deplibs -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib~$RM $lib.exp'
clustalo-1.2.4/configure-9280-
##############################################
clustalo-1.2.4/configure-9295- else
clustalo-1.2.4/configure:9296: case `$CC -V 2>&1` in
clustalo-1.2.4/configure-9297- *"Compilers 5.0"*)
##############################################
clustalo-1.2.4/configure-9689- esac
clustalo-1.2.4/configure:9690: lt_search_path_spec=`$CC -print-search-dirs | awk $lt_awk_arg | $SED -e "s/^libraries://" -e "s,=/,/,g"`
clustalo-1.2.4/configure-9691- if $ECHO "$lt_search_path_spec" | $GREP ';' >/dev/null ; then
##############################################
clustalo-1.2.4/configure-9695- # okay in the real world where ";" in dirpaths is itself problematic.
clustalo-1.2.4/configure:9696: lt_search_path_spec=`$ECHO "$lt_search_path_spec" | $SED -e 's/;/ /g'`
clustalo-1.2.4/configure-9697- else
clustalo-1.2.4/configure:9698: lt_search_path_spec=`$ECHO "$lt_search_path_spec" | $SED -e "s/$PATH_SEPARATOR/ /g"`
clustalo-1.2.4/configure-9699- fi
##############################################
clustalo-1.2.4/configure-9702- lt_tmp_lt_search_path_spec=
clustalo-1.2.4/configure:9703: lt_multi_os_dir=`$CC $CPPFLAGS $CFLAGS $LDFLAGS -print-multi-os-directory 2>/dev/null`
clustalo-1.2.4/configure-9704- for lt_sys_path in $lt_search_path_spec; do
##############################################
clustalo-1.2.4/configure-9731-}'`
clustalo-1.2.4/configure:9732: sys_lib_search_path_spec=`$ECHO $lt_search_path_spec`
clustalo-1.2.4/configure-9733-else
##############################################
clustalo-1.2.4/configure-9819- # Create ${libname}_ixlibrary.a entries in /sys/libs.
clustalo-1.2.4/configure:9820: finish_eval='for lib in `ls $libdir/*.ixlibrary 2>/dev/null`; do libname=`$ECHO "X$lib" | $Xsed -e '\''s%^.*/\([^/]*\)\.ixlibrary$%\1%'\''`; test $RM /sys/libs/${libname}_ixlibrary.a; $show "cd /sys/libs && $LN_S $lib ${libname}_ixlibrary.a"; cd /sys/libs && $LN_S $lib ${libname}_ixlibrary.a || exit 1; done'
clustalo-1.2.4/configure-9821- ;;
##############################################
clustalo-1.2.4/configure-9854- # DLL is installed to $(libdir)/../bin by postinstall_cmds
clustalo-1.2.4/configure:9855: postinstall_cmds='base_file=`basename \${file}`~
clustalo-1.2.4/configure:9856: dlpath=`$SHELL 2>&1 -c '\''. $dir/'\''\${base_file}'\''i; echo \$dlname'\''`~
clustalo-1.2.4/configure:9857: dldir=$destdir/`dirname \$dlpath`~
clustalo-1.2.4/configure-9858- test -d \$dldir || mkdir -p \$dldir~
##############################################
clustalo-1.2.4/configure-9863- fi'
clustalo-1.2.4/configure:9864: postuninstall_cmds='dldll=`$SHELL 2>&1 -c '\''. $file; echo \$dlname'\''`~
clustalo-1.2.4/configure-9865- dlpath=$dir/\$dldll~
##############################################
clustalo-1.2.4/configure-9871- # Cygwin DLLs use 'cyg' prefix rather than 'lib'
clustalo-1.2.4/configure:9872: soname_spec='`echo ${libname} | sed -e 's/^lib/cyg/'``echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext}'
clustalo-1.2.4/configure-9873- sys_lib_search_path_spec="/usr/lib /lib/w32api /lib /usr/local/lib"
##############################################
clustalo-1.2.4/configure-9876- # MinGW DLLs use traditional 'lib' prefix
clustalo-1.2.4/configure:9877: soname_spec='${libname}`echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext}'
clustalo-1.2.4/configure:9878: sys_lib_search_path_spec=`$CC -print-search-dirs | $GREP "^libraries:" | $SED -e "s/^libraries://" -e "s,=/,/,g"`
clustalo-1.2.4/configure-9879- if $ECHO "$sys_lib_search_path_spec" | $GREP ';[c-zC-Z]:/' >/dev/null; then
##############################################
clustalo-1.2.4/configure-9885- # which wouldn't understand a cygwinified path. Ahh.
clustalo-1.2.4/configure:9886: sys_lib_search_path_spec=`$ECHO "$sys_lib_search_path_spec" | $SED -e 's/;/ /g'`
clustalo-1.2.4/configure-9887- else
clustalo-1.2.4/configure:9888: sys_lib_search_path_spec=`$ECHO "$sys_lib_search_path_spec" | $SED -e "s/$PATH_SEPARATOR/ /g"`
clustalo-1.2.4/configure-9889- fi
##############################################
clustalo-1.2.4/configure-9892- # pw32 DLLs use 'pw' prefix rather than 'lib'
clustalo-1.2.4/configure:9893: library_names_spec='`echo ${libname} | sed -e 's/^lib/pw/'``echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext}'
clustalo-1.2.4/configure-9894- ;;
##############################################
clustalo-1.2.4/configure-9898- *)
clustalo-1.2.4/configure:9899: library_names_spec='${libname}`echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext} $libname.lib'
clustalo-1.2.4/configure-9900- ;;
##############################################
clustalo-1.2.4/configure-9915- shlibpath_var=DYLD_LIBRARY_PATH
clustalo-1.2.4/configure:9916: shrext_cmds='`test .$module = .yes && echo .so || echo .dylib`'
clustalo-1.2.4/configure-9917-
##############################################
clustalo-1.2.4/configure-10163- if test -f /etc/ld.so.conf; then
clustalo-1.2.4/configure:10164: lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;/^[ ]*hwcap[ ]/d;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
clustalo-1.2.4/configure-10165- sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
##############################################
clustalo-1.2.4/configure-10237- shlibpath_var=LD_LIBRARY_PATH
clustalo-1.2.4/configure:10238: if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then
clustalo-1.2.4/configure-10239- case $host_os in
##############################################
clustalo-1.2.4/configure-12260- if test "$am_compiler_list" = ""; then
clustalo-1.2.4/configure:12261: am_compiler_list=`sed -n 's/^#*\([a-zA-Z0-9]*\))$/\1/p' < ./depcomp`
clustalo-1.2.4/configure-12262- fi
##############################################
clustalo-1.2.4/configure-12982- if test "$am_compiler_list" = ""; then
clustalo-1.2.4/configure:12983: am_compiler_list=`sed -n 's/^#*\([a-zA-Z0-9]*\))$/\1/p' < ./depcomp`
clustalo-1.2.4/configure-12984- fi
##############################################
clustalo-1.2.4/configure-13463- if test "$am_compiler_list" = ""; then
clustalo-1.2.4/configure:13464: am_compiler_list=`sed -n 's/^#*\([a-zA-Z0-9]*\))$/\1/p' < ./depcomp`
clustalo-1.2.4/configure-13465- fi
##############################################
clustalo-1.2.4/configure-13888-done
clustalo-1.2.4/configure:13889:cc_basename=`$ECHO "X$cc_temp" | $Xsed -e 's%.*/%%' -e "s%^$host_alias-%%"`
clustalo-1.2.4/configure-13890-
##############################################
clustalo-1.2.4/configure-13920- # gcc leaves a trailing carriage return which upsets mingw
clustalo-1.2.4/configure:13921: ac_prog=`($CC -print-prog-name=ld) 2>&5 | tr -d '\015'` ;;
clustalo-1.2.4/configure-13922- *)
clustalo-1.2.4/configure:13923: ac_prog=`($CC -print-prog-name=ld) 2>&5` ;;
clustalo-1.2.4/configure-13924- esac
##############################################
clustalo-1.2.4/configure-13929- # Canonicalize the pathname of ld
clustalo-1.2.4/configure:13930: ac_prog=`$ECHO "$ac_prog"| $SED 's%\\\\%/%g'`
clustalo-1.2.4/configure-13931- while $ECHO "$ac_prog" | $GREP "$re_direlt" > /dev/null 2>&1; do
clustalo-1.2.4/configure:13932: ac_prog=`$ECHO $ac_prog| $SED "s%$re_direlt%/%"`
clustalo-1.2.4/configure-13933- done
##############################################
clustalo-1.2.4/configure-13964- # Break only if it was the GNU/non-GNU ld that we prefer.
clustalo-1.2.4/configure:13965: case `"$lt_cv_path_LD" -v 2>&1 </dev/null` in
clustalo-1.2.4/configure-13966- *GNU* | *'with BFD'*)
##############################################
clustalo-1.2.4/configure-13997- # I'd rather use --version here, but apparently some GNU lds only accept -v.
clustalo-1.2.4/configure:13998:case `$LD -v 2>&1 </dev/null` in
clustalo-1.2.4/configure-13999-*GNU* | *'with BFD'*)
##############################################
clustalo-1.2.4/configure-14031- # ancient GNU ld didn't support --whole-archive et. al.
clustalo-1.2.4/configure:14032: if eval "`$CC -print-prog-name=ld` --help 2>&1" |
clustalo-1.2.4/configure-14033- $GREP 'no-whole-archive' > /dev/null; then
##############################################
clustalo-1.2.4/configure-14115- # below for broken collect2 doesn't work under 4.3+
clustalo-1.2.4/configure:14116: collect2name=`${CC} -print-prog-name=collect2`
clustalo-1.2.4/configure-14117- if test -f "$collect2name" &&
##############################################
clustalo-1.2.4/configure-14206- }'
clustalo-1.2.4/configure:14207:aix_libpath=`dump -H conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
clustalo-1.2.4/configure-14208-# Check for a 64-bit object if we didn't find anything.
clustalo-1.2.4/configure-14209-if test -z "$aix_libpath"; then
clustalo-1.2.4/configure:14210: aix_libpath=`dump -HX64 conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
clustalo-1.2.4/configure-14211-fi
##############################################
clustalo-1.2.4/configure-14225-
clustalo-1.2.4/configure:14226: archive_expsym_cmds_CXX='$CC -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags `if test "x${allow_undefined_flag}" != "x"; then $ECHO "X${wl}${allow_undefined_flag}" | $Xsed; else :; fi` '"\${wl}$exp_sym_flag:\$export_symbols $shared_flag"
clustalo-1.2.4/configure-14227- else
##############################################
clustalo-1.2.4/configure-14278- }'
clustalo-1.2.4/configure:14279:aix_libpath=`dump -H conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
clustalo-1.2.4/configure-14280-# Check for a 64-bit object if we didn't find anything.
clustalo-1.2.4/configure-14281-if test -z "$aix_libpath"; then
clustalo-1.2.4/configure:14282: aix_libpath=`dump -HX64 conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
clustalo-1.2.4/configure-14283-fi
##############################################
clustalo-1.2.4/configure-14342- # is EXPORTS), use it as is; otherwise, prepend...
clustalo-1.2.4/configure:14343: archive_expsym_cmds_CXX='if test "x`$SED 1q $export_symbols`" = xEXPORTS; then
clustalo-1.2.4/configure-14344- cp $export_symbols $output_objdir/$soname.def;
##############################################
clustalo-1.2.4/configure-14445- # dependencies.
clustalo-1.2.4/configure:14446: output_verbose_link_cmd='templist=`($CC -b $CFLAGS -v conftest.$objext 2>&1) | $EGREP "\-L"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; $ECHO "X$list" | $Xsed'
clustalo-1.2.4/configure-14447- ;;
##############################################
clustalo-1.2.4/configure-14510- # dependencies.
clustalo-1.2.4/configure:14511: output_verbose_link_cmd='templist=`($CC -b $CFLAGS -v conftest.$objext 2>&1) | $GREP "\-L"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; $ECHO "X$list" | $Xsed'
clustalo-1.2.4/configure-14512- ;;
##############################################
clustalo-1.2.4/configure-14546- # time. Moving up from 0x10000000 also allows more sbrk(2) space.
clustalo-1.2.4/configure:14547: archive_cmds_CXX='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib'
clustalo-1.2.4/configure:14548: archive_expsym_cmds_CXX='sed "s,^,_," $export_symbols >$output_objdir/$soname.expsym~$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--retain-symbols-file,$output_objdir/$soname.expsym ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib'
clustalo-1.2.4/configure-14549- ;;
##############################################
clustalo-1.2.4/configure-14553- # SGI C++
clustalo-1.2.4/configure:14554: archive_cmds_CXX='$CC -shared -all -multigot $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib'
clustalo-1.2.4/configure-14555-
##############################################
clustalo-1.2.4/configure-14564- if test "$with_gnu_ld" = no; then
clustalo-1.2.4/configure:14565: archive_cmds_CXX='$CC -shared -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
clustalo-1.2.4/configure-14566- else
clustalo-1.2.4/configure:14567: archive_cmds_CXX='$CC -shared -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` -o $lib'
clustalo-1.2.4/configure-14568- fi
##############################################
clustalo-1.2.4/configure-14585- # to its proper name (with version) after linking.
clustalo-1.2.4/configure:14586: archive_cmds_CXX='tempext=`echo $shared_ext | $SED -e '\''s/\([^()0-9A-Za-z{}]\)/\\\\\1/g'\''`; templib=`echo $lib | $SED -e "s/\${tempext}\..*/.so/"`; $CC $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags --soname $soname -o \$templib; mv \$templib $lib'
clustalo-1.2.4/configure:14587: archive_expsym_cmds_CXX='tempext=`echo $shared_ext | $SED -e '\''s/\([^()0-9A-Za-z{}]\)/\\\\\1/g'\''`; templib=`echo $lib | $SED -e "s/\${tempext}\..*/.so/"`; $CC $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags --soname $soname -o \$templib ${wl}-retain-symbols-file,$export_symbols; mv \$templib $lib'
clustalo-1.2.4/configure-14588- # Commands to make compiler produce verbose output that lists
##############################################
clustalo-1.2.4/configure-14595- # dependencies.
clustalo-1.2.4/configure:14596: output_verbose_link_cmd='templist=`$CC $CFLAGS -v conftest.$objext -o libconftest$shared_ext 2>&1 | $GREP "ld"`; rm -f libconftest$shared_ext; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; $ECHO "X$list" | $Xsed'
clustalo-1.2.4/configure-14597-
##############################################
clustalo-1.2.4/configure-14610- # earlier do not add the objects themselves.
clustalo-1.2.4/configure:14611: case `$CC -V 2>&1` in
clustalo-1.2.4/configure-14612- *"Version 7."*)
##############################################
clustalo-1.2.4/configure-14631- # Portland Group C++ compiler
clustalo-1.2.4/configure:14632: case `$CC -V` in
clustalo-1.2.4/configure-14633- *pgCC\ [1-5]* | *pgcpp\ [1-5]*)
##############################################
clustalo-1.2.4/configure-14636- $CC --prelink_objects --instantiation_dir $tpldir $objs $libobjs $compile_deplibs~
clustalo-1.2.4/configure:14637: compile_command="$compile_command `find $tpldir -name \*.o | $NL2SP`"'
clustalo-1.2.4/configure-14638- old_archive_cmds_CXX='tpldir=Template.dir~
##############################################
clustalo-1.2.4/configure-14640- $CC --prelink_objects --instantiation_dir $tpldir $oldobjs$old_deplibs~
clustalo-1.2.4/configure:14641: $AR $AR_FLAGS $oldlib$oldobjs$old_deplibs `find $tpldir -name \*.o | $NL2SP`~
clustalo-1.2.4/configure-14642- $RANLIB $oldlib'
##############################################
clustalo-1.2.4/configure-14645- $CC --prelink_objects --instantiation_dir $tpldir $predep_objects $libobjs $deplibs $convenience $postdep_objects~
clustalo-1.2.4/configure:14646: $CC -shared $pic_flag $predep_objects $libobjs $deplibs `find $tpldir -name \*.o | $NL2SP` $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname -o $lib'
clustalo-1.2.4/configure-14647- archive_expsym_cmds_CXX='tpldir=Template.dir~
##############################################
clustalo-1.2.4/configure-14649- $CC --prelink_objects --instantiation_dir $tpldir $predep_objects $libobjs $deplibs $convenience $postdep_objects~
clustalo-1.2.4/configure:14650: $CC -shared $pic_flag $predep_objects $libobjs $deplibs `find $tpldir -name \*.o | $NL2SP` $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname ${wl}-retain-symbols-file ${wl}$export_symbols -o $lib'
clustalo-1.2.4/configure-14651- ;;
##############################################
clustalo-1.2.4/configure-14659- export_dynamic_flag_spec_CXX='${wl}--export-dynamic'
clustalo-1.2.4/configure:14660: whole_archive_flag_spec_CXX='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive'
clustalo-1.2.4/configure-14661- ;;
##############################################
clustalo-1.2.4/configure-14678- # dependencies.
clustalo-1.2.4/configure:14679: output_verbose_link_cmd='templist=`$CC -shared $CFLAGS -v conftest.$objext 2>&1 | $GREP "ld"`; templist=`$ECHO "X$templist" | $Xsed -e "s/\(^.*ld.*\)\( .*ld .*$\)/\1/"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; $ECHO "X$list" | $Xsed'
clustalo-1.2.4/configure-14680- ;;
##############################################
clustalo-1.2.4/configure-14693- *)
clustalo-1.2.4/configure:14694: case `$CC -V 2>&1 | sed 5q` in
clustalo-1.2.4/configure-14695- *Sun\ C*)
##############################################
clustalo-1.2.4/configure-14700- hardcode_libdir_flag_spec_CXX='-R$libdir'
clustalo-1.2.4/configure:14701: whole_archive_flag_spec_CXX='${wl}--whole-archive`new_convenience=; for conv in $convenience\"\"; do test -z \"$conv\" || new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive'
clustalo-1.2.4/configure-14702- compiler_needs_object_CXX=yes
##############################################
clustalo-1.2.4/configure-14770- hardcode_libdir_flag_spec_CXX='${wl}-rpath,$libdir'
clustalo-1.2.4/configure:14771: if test -z "`echo __ELF__ | $CC -E - | grep __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then
clustalo-1.2.4/configure-14772- archive_expsym_cmds_CXX='$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-retain-symbols-file,$export_symbols -o $lib'
##############################################
clustalo-1.2.4/configure-14789- # to its proper name (with version) after linking.
clustalo-1.2.4/configure:14790: archive_cmds_CXX='tempext=`echo $shared_ext | $SED -e '\''s/\([^()0-9A-Za-z{}]\)/\\\\\1/g'\''`; templib=`echo "$lib" | $SED -e "s/\${tempext}\..*/.so/"`; $CC $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags --soname $soname -o \$templib; mv \$templib $lib'
clustalo-1.2.4/configure-14791-
##############################################
clustalo-1.2.4/configure-14810- allow_undefined_flag_CXX=' ${wl}-expect_unresolved ${wl}\*'
clustalo-1.2.4/configure:14811: archive_cmds_CXX='$CC -shared${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $soname `test -n "$verstring" && $ECHO "X${wl}-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib'
clustalo-1.2.4/configure-14812- hardcode_libdir_flag_spec_CXX='${wl}-rpath ${wl}$libdir'
##############################################
clustalo-1.2.4/configure-14815- allow_undefined_flag_CXX=' -expect_unresolved \*'
clustalo-1.2.4/configure:14816: archive_cmds_CXX='$CC -shared${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -msym -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib'
clustalo-1.2.4/configure:14817: archive_expsym_cmds_CXX='for i in `cat $export_symbols`; do printf "%s %s\\n" -exported_symbol "\$i" >> $lib.exp; done~
clustalo-1.2.4/configure-14818- echo "-hidden">> $lib.exp~
clustalo-1.2.4/configure:14819: $CC -shared$allow_undefined_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -msym -soname $soname ${wl}-input ${wl}$lib.exp `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib~
clustalo-1.2.4/configure-14820- $RM $lib.exp'
##############################################
clustalo-1.2.4/configure-14834- # dependencies.
clustalo-1.2.4/configure:14835: output_verbose_link_cmd='templist=`$CC -shared $CFLAGS -v conftest.$objext 2>&1 | $GREP "ld" | $GREP -v "ld:"`; templist=`$ECHO "X$templist" | $Xsed -e "s/\(^.*ld.*\)\( .*ld.*$\)/\1/"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; $ECHO "X$list" | $Xsed'
clustalo-1.2.4/configure-14836- ;;
##############################################
clustalo-1.2.4/configure-14841- osf3*)
clustalo-1.2.4/configure:14842: archive_cmds_CXX='$CC -shared -nostdlib ${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
clustalo-1.2.4/configure-14843- ;;
clustalo-1.2.4/configure-14844- *)
clustalo-1.2.4/configure:14845: archive_cmds_CXX='$CC -shared -nostdlib ${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-msym ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
clustalo-1.2.4/configure-14846- ;;
##############################################
clustalo-1.2.4/configure-15076-
clustalo-1.2.4/configure:15077: for p in `eval "$output_verbose_link_cmd"`; do
clustalo-1.2.4/configure-15078- case $p in
##############################################
clustalo-1.2.4/configure-15161-linux*)
clustalo-1.2.4/configure:15162: case `$CC -V 2>&1 | sed 5q` in
clustalo-1.2.4/configure-15163- *Sun\ C*)
##############################################
clustalo-1.2.4/configure-15212-if test -n "${compiler_lib_search_path_CXX}"; then
clustalo-1.2.4/configure:15213: compiler_lib_search_dirs_CXX=`echo " ${compiler_lib_search_path_CXX}" | ${SED} -e 's! -L! !g' -e 's!^ !!'`
clustalo-1.2.4/configure-15214-fi
##############################################
clustalo-1.2.4/configure-15445- *)
clustalo-1.2.4/configure:15446: case `$CC -V 2>&1 | sed 5q` in
clustalo-1.2.4/configure-15447- *Sun\ C*)
##############################################
clustalo-1.2.4/configure-15790- if test "$hard_links" = no; then
clustalo-1.2.4/configure:15791: { $as_echo "$as_me:$LINENO: WARNING: \`$CC' does not support \`-c -o', so \`make -j' may be unsafe" >&5
clustalo-1.2.4/configure:15792:$as_echo "$as_me: WARNING: \`$CC' does not support \`-c -o', so \`make -j' may be unsafe" >&2;}
clustalo-1.2.4/configure-15793- need_locks=warn
##############################################
clustalo-1.2.4/configure-16053- # Create ${libname}_ixlibrary.a entries in /sys/libs.
clustalo-1.2.4/configure:16054: finish_eval='for lib in `ls $libdir/*.ixlibrary 2>/dev/null`; do libname=`$ECHO "X$lib" | $Xsed -e '\''s%^.*/\([^/]*\)\.ixlibrary$%\1%'\''`; test $RM /sys/libs/${libname}_ixlibrary.a; $show "cd /sys/libs && $LN_S $lib ${libname}_ixlibrary.a"; cd /sys/libs && $LN_S $lib ${libname}_ixlibrary.a || exit 1; done'
clustalo-1.2.4/configure-16055- ;;
##############################################
clustalo-1.2.4/configure-16088- # DLL is installed to $(libdir)/../bin by postinstall_cmds
clustalo-1.2.4/configure:16089: postinstall_cmds='base_file=`basename \${file}`~
clustalo-1.2.4/configure:16090: dlpath=`$SHELL 2>&1 -c '\''. $dir/'\''\${base_file}'\''i; echo \$dlname'\''`~
clustalo-1.2.4/configure:16091: dldir=$destdir/`dirname \$dlpath`~
clustalo-1.2.4/configure-16092- test -d \$dldir || mkdir -p \$dldir~
##############################################
clustalo-1.2.4/configure-16097- fi'
clustalo-1.2.4/configure:16098: postuninstall_cmds='dldll=`$SHELL 2>&1 -c '\''. $file; echo \$dlname'\''`~
clustalo-1.2.4/configure-16099- dlpath=$dir/\$dldll~
##############################################
clustalo-1.2.4/configure-16105- # Cygwin DLLs use 'cyg' prefix rather than 'lib'
clustalo-1.2.4/configure:16106: soname_spec='`echo ${libname} | sed -e 's/^lib/cyg/'``echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext}'
clustalo-1.2.4/configure-16107- sys_lib_search_path_spec="/usr/lib /lib/w32api /lib /usr/local/lib"
##############################################
clustalo-1.2.4/configure-16110- # MinGW DLLs use traditional 'lib' prefix
clustalo-1.2.4/configure:16111: soname_spec='${libname}`echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext}'
clustalo-1.2.4/configure:16112: sys_lib_search_path_spec=`$CC -print-search-dirs | $GREP "^libraries:" | $SED -e "s/^libraries://" -e "s,=/,/,g"`
clustalo-1.2.4/configure-16113- if $ECHO "$sys_lib_search_path_spec" | $GREP ';[c-zC-Z]:/' >/dev/null; then
##############################################
clustalo-1.2.4/configure-16119- # which wouldn't understand a cygwinified path. Ahh.
clustalo-1.2.4/configure:16120: sys_lib_search_path_spec=`$ECHO "$sys_lib_search_path_spec" | $SED -e 's/;/ /g'`
clustalo-1.2.4/configure-16121- else
clustalo-1.2.4/configure:16122: sys_lib_search_path_spec=`$ECHO "$sys_lib_search_path_spec" | $SED -e "s/$PATH_SEPARATOR/ /g"`
clustalo-1.2.4/configure-16123- fi
##############################################
clustalo-1.2.4/configure-16126- # pw32 DLLs use 'pw' prefix rather than 'lib'
clustalo-1.2.4/configure:16127: library_names_spec='`echo ${libname} | sed -e 's/^lib/pw/'``echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext}'
clustalo-1.2.4/configure-16128- ;;
##############################################
clustalo-1.2.4/configure-16132- *)
clustalo-1.2.4/configure:16133: library_names_spec='${libname}`echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext} $libname.lib'
clustalo-1.2.4/configure-16134- ;;
##############################################
clustalo-1.2.4/configure-16149- shlibpath_var=DYLD_LIBRARY_PATH
clustalo-1.2.4/configure:16150: shrext_cmds='`test .$module = .yes && echo .so || echo .dylib`'
clustalo-1.2.4/configure-16151-
##############################################
clustalo-1.2.4/configure-16396- if test -f /etc/ld.so.conf; then
clustalo-1.2.4/configure:16397: lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;/^[ ]*hwcap[ ]/d;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
clustalo-1.2.4/configure-16398- sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
##############################################
clustalo-1.2.4/configure-16470- shlibpath_var=LD_LIBRARY_PATH
clustalo-1.2.4/configure:16471: if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then
clustalo-1.2.4/configure-16472- case $host_os in
##############################################
clustalo-1.2.4/configure-16982-#AC_PATH_PROG(svnversioncommand, svnversion)
clustalo-1.2.4/configure:16983:#if test "X$svnversioncommand" = "X" || test `$svnversioncommand -n '.'` = "exported"; then
clustalo-1.2.4/configure-16984-#AC_DEFINE_UNQUOTED(SVN_VERSION, ["`cat saved_svn_version.txt`"], [repository svn version])
##############################################
clustalo-1.2.4/configure-17305-do
clustalo-1.2.4/configure:17306:as_ac_Header=`$as_echo "ac_cv_header_$ac_header" | $as_tr_sh`
clustalo-1.2.4/configure-17307-if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
##############################################
clustalo-1.2.4/configure-17446- cat >>confdefs.h <<_ACEOF
clustalo-1.2.4/configure:17447:#define `$as_echo "HAVE_$ac_header" | $as_tr_cpp` 1
clustalo-1.2.4/configure-17448-_ACEOF
##############################################
clustalo-1.2.4/configure-17904-do
clustalo-1.2.4/configure:17905:as_ac_Header=`$as_echo "ac_cv_header_$ac_header" | $as_tr_sh`
clustalo-1.2.4/configure-17906-if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
##############################################
clustalo-1.2.4/configure-18045- cat >>confdefs.h <<_ACEOF
clustalo-1.2.4/configure:18046:#define `$as_echo "HAVE_$ac_header" | $as_tr_cpp` 1
clustalo-1.2.4/configure-18047-_ACEOF
##############################################
clustalo-1.2.4/configure-18807-do
clustalo-1.2.4/configure:18808:as_ac_var=`$as_echo "ac_cv_func_$ac_func" | $as_tr_sh`
clustalo-1.2.4/configure-18809-{ $as_echo "$as_me:$LINENO: checking for $ac_func" >&5
##############################################
clustalo-1.2.4/configure-18899- cat >>confdefs.h <<_ACEOF
clustalo-1.2.4/configure:18900:#define `$as_echo "HAVE_$ac_func" | $as_tr_cpp` 1
clustalo-1.2.4/configure-18901-_ACEOF
##############################################
clustalo-1.2.4/configure-18994-
clustalo-1.2.4/configure:18995: ac_lo=`expr $ac_mid + 1`
clustalo-1.2.4/configure-18996- if test $ac_lo -le $ac_mid; then
##############################################
clustalo-1.2.4/configure-18999- fi
clustalo-1.2.4/configure:19000: ac_mid=`expr 2 '*' $ac_mid + 1`
clustalo-1.2.4/configure-19001-fi
##############################################
clustalo-1.2.4/configure-19085-
clustalo-1.2.4/configure:19086: ac_hi=`expr '(' $ac_mid ')' - 1`
clustalo-1.2.4/configure-19087- if test $ac_mid -le $ac_hi; then
##############################################
clustalo-1.2.4/configure-19090- fi
clustalo-1.2.4/configure:19091: ac_mid=`expr 2 '*' $ac_mid`
clustalo-1.2.4/configure-19092-fi
##############################################
clustalo-1.2.4/configure-19108-while test "x$ac_lo" != "x$ac_hi"; do
clustalo-1.2.4/configure:19109: ac_mid=`expr '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo`
clustalo-1.2.4/configure-19110- cat >conftest.$ac_ext <<_ACEOF
##############################################
clustalo-1.2.4/configure-19149-
clustalo-1.2.4/configure:19150: ac_lo=`expr '(' $ac_mid ')' + 1`
clustalo-1.2.4/configure-19151-fi
##############################################
clustalo-1.2.4/configure-19353-
clustalo-1.2.4/configure:19354: ac_lo=`expr $ac_mid + 1`
clustalo-1.2.4/configure-19355- if test $ac_lo -le $ac_mid; then
##############################################
clustalo-1.2.4/configure-19358- fi
clustalo-1.2.4/configure:19359: ac_mid=`expr 2 '*' $ac_mid + 1`
clustalo-1.2.4/configure-19360-fi
##############################################
clustalo-1.2.4/configure-19444-
clustalo-1.2.4/configure:19445: ac_hi=`expr '(' $ac_mid ')' - 1`
clustalo-1.2.4/configure-19446- if test $ac_mid -le $ac_hi; then
##############################################
clustalo-1.2.4/configure-19449- fi
clustalo-1.2.4/configure:19450: ac_mid=`expr 2 '*' $ac_mid`
clustalo-1.2.4/configure-19451-fi
##############################################
clustalo-1.2.4/configure-19467-while test "x$ac_lo" != "x$ac_hi"; do
clustalo-1.2.4/configure:19468: ac_mid=`expr '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo`
clustalo-1.2.4/configure-19469- cat >conftest.$ac_ext <<_ACEOF
##############################################
clustalo-1.2.4/configure-19508-
clustalo-1.2.4/configure:19509: ac_lo=`expr '(' $ac_mid ')' + 1`
clustalo-1.2.4/configure-19510-fi
##############################################
clustalo-1.2.4/configure-19712-
clustalo-1.2.4/configure:19713: ac_lo=`expr $ac_mid + 1`
clustalo-1.2.4/configure-19714- if test $ac_lo -le $ac_mid; then
##############################################
clustalo-1.2.4/configure-19717- fi
clustalo-1.2.4/configure:19718: ac_mid=`expr 2 '*' $ac_mid + 1`
clustalo-1.2.4/configure-19719-fi
##############################################
clustalo-1.2.4/configure-19803-
clustalo-1.2.4/configure:19804: ac_hi=`expr '(' $ac_mid ')' - 1`
clustalo-1.2.4/configure-19805- if test $ac_mid -le $ac_hi; then
##############################################
clustalo-1.2.4/configure-19808- fi
clustalo-1.2.4/configure:19809: ac_mid=`expr 2 '*' $ac_mid`
clustalo-1.2.4/configure-19810-fi
##############################################
clustalo-1.2.4/configure-19826-while test "x$ac_lo" != "x$ac_hi"; do
clustalo-1.2.4/configure:19827: ac_mid=`expr '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo`
clustalo-1.2.4/configure-19828- cat >conftest.$ac_ext <<_ACEOF
##############################################
clustalo-1.2.4/configure-19867-
clustalo-1.2.4/configure:19868: ac_lo=`expr '(' $ac_mid ')' + 1`
clustalo-1.2.4/configure-19869-fi
##############################################
clustalo-1.2.4/configure-20071-
clustalo-1.2.4/configure:20072: ac_lo=`expr $ac_mid + 1`
clustalo-1.2.4/configure-20073- if test $ac_lo -le $ac_mid; then
##############################################
clustalo-1.2.4/configure-20076- fi
clustalo-1.2.4/configure:20077: ac_mid=`expr 2 '*' $ac_mid + 1`
clustalo-1.2.4/configure-20078-fi
##############################################
clustalo-1.2.4/configure-20162-
clustalo-1.2.4/configure:20163: ac_hi=`expr '(' $ac_mid ')' - 1`
clustalo-1.2.4/configure-20164- if test $ac_mid -le $ac_hi; then
##############################################
clustalo-1.2.4/configure-20167- fi
clustalo-1.2.4/configure:20168: ac_mid=`expr 2 '*' $ac_mid`
clustalo-1.2.4/configure-20169-fi
##############################################
clustalo-1.2.4/configure-20185-while test "x$ac_lo" != "x$ac_hi"; do
clustalo-1.2.4/configure:20186: ac_mid=`expr '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo`
clustalo-1.2.4/configure-20187- cat >conftest.$ac_ext <<_ACEOF
##############################################
clustalo-1.2.4/configure-20226-
clustalo-1.2.4/configure:20227: ac_lo=`expr '(' $ac_mid ')' + 1`
clustalo-1.2.4/configure-20228-fi
##############################################
clustalo-1.2.4/configure-20347-do
clustalo-1.2.4/configure:20348:as_ac_var=`$as_echo "ac_cv_func_$ac_func" | $as_tr_sh`
clustalo-1.2.4/configure-20349-{ $as_echo "$as_me:$LINENO: checking for $ac_func" >&5
##############################################
clustalo-1.2.4/configure-20439- cat >>confdefs.h <<_ACEOF
clustalo-1.2.4/configure:20440:#define `$as_echo "HAVE_$ac_func" | $as_tr_cpp` 1
clustalo-1.2.4/configure-20441-_ACEOF
##############################################
clustalo-1.2.4/configure-20449-do
clustalo-1.2.4/configure:20450:as_ac_var=`$as_echo "ac_cv_func_$ac_func" | $as_tr_sh`
clustalo-1.2.4/configure-20451-{ $as_echo "$as_me:$LINENO: checking for $ac_func" >&5
##############################################
clustalo-1.2.4/configure-20541- cat >>confdefs.h <<_ACEOF
clustalo-1.2.4/configure:20542:#define `$as_echo "HAVE_$ac_func" | $as_tr_cpp` 1
clustalo-1.2.4/configure-20543-_ACEOF
##############################################
clustalo-1.2.4/configure-20551-do
clustalo-1.2.4/configure:20552:as_ac_var=`$as_echo "ac_cv_func_$ac_func" | $as_tr_sh`
clustalo-1.2.4/configure-20553-{ $as_echo "$as_me:$LINENO: checking for $ac_func" >&5
##############################################
clustalo-1.2.4/configure-20643- cat >>confdefs.h <<_ACEOF
clustalo-1.2.4/configure:20644:#define `$as_echo "HAVE_$ac_func" | $as_tr_cpp` 1
clustalo-1.2.4/configure-20645-_ACEOF
##############################################
clustalo-1.2.4/configure-20653-do
clustalo-1.2.4/configure:20654:as_ac_var=`$as_echo "ac_cv_func_$ac_func" | $as_tr_sh`
clustalo-1.2.4/configure-20655-{ $as_echo "$as_me:$LINENO: checking for $ac_func" >&5
##############################################
clustalo-1.2.4/configure-20745- cat >>confdefs.h <<_ACEOF
clustalo-1.2.4/configure:20746:#define `$as_echo "HAVE_$ac_func" | $as_tr_cpp` 1
clustalo-1.2.4/configure-20747-_ACEOF
##############################################
clustalo-1.2.4/configure-20944-
clustalo-1.2.4/configure:20945: ac_lo=`expr $ac_mid + 1`
clustalo-1.2.4/configure-20946- if test $ac_lo -le $ac_mid; then
##############################################
clustalo-1.2.4/configure-20949- fi
clustalo-1.2.4/configure:20950: ac_mid=`expr 2 '*' $ac_mid + 1`
clustalo-1.2.4/configure-20951-fi
##############################################
clustalo-1.2.4/configure-21035-
clustalo-1.2.4/configure:21036: ac_hi=`expr '(' $ac_mid ')' - 1`
clustalo-1.2.4/configure-21037- if test $ac_mid -le $ac_hi; then
##############################################
clustalo-1.2.4/configure-21040- fi
clustalo-1.2.4/configure:21041: ac_mid=`expr 2 '*' $ac_mid`
clustalo-1.2.4/configure-21042-fi
##############################################
clustalo-1.2.4/configure-21058-while test "x$ac_lo" != "x$ac_hi"; do
clustalo-1.2.4/configure:21059: ac_mid=`expr '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo`
clustalo-1.2.4/configure-21060- cat >conftest.$ac_ext <<_ACEOF
##############################################
clustalo-1.2.4/configure-21099-
clustalo-1.2.4/configure:21100: ac_lo=`expr '(' $ac_mid ')' + 1`
clustalo-1.2.4/configure-21101-fi
##############################################
clustalo-1.2.4/configure-21280-#if test "$SVNVERSION_BIN" != "no"; then
clustalo-1.2.4/configure:21281:# SVNVERSION=`$SVNVERSION_BIN -n $srcdir`
clustalo-1.2.4/configure-21282-# if test $SVNVERSION != "exported";
##############################################
clustalo-1.2.4/configure-21423- ac_script='s/\$U\././;s/\.o$//;s/\.obj$//'
clustalo-1.2.4/configure:21424: ac_i=`$as_echo "$ac_i" | sed "$ac_script"`
clustalo-1.2.4/configure-21425- # 2. Prepend LIBOBJDIR. When used with automake>=1.10 LIBOBJDIR
##############################################
clustalo-1.2.4/configure-21529-as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo$as_echo
clustalo-1.2.4/configure:21530:if (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
clustalo-1.2.4/configure-21531- as_echo='printf %s\n'
##############################################
clustalo-1.2.4/configure-21533-else
clustalo-1.2.4/configure:21534: if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then
clustalo-1.2.4/configure-21535- as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"'
##############################################
clustalo-1.2.4/configure-21543- expr "X$arg" : "X\\(.*\\)$as_nl";
clustalo-1.2.4/configure:21544: arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
clustalo-1.2.4/configure-21545- esac;
##############################################
clustalo-1.2.4/configure-21659- test "x$as_lineno_1" != "x$as_lineno_2" &&
clustalo-1.2.4/configure:21660: test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2" || {
clustalo-1.2.4/configure-21661-
##############################################
clustalo-1.2.4/configure-21772- esac;
clustalo-1.2.4/configure:21773: case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in
clustalo-1.2.4/configure-21774- ???[sx]*):;;*)false;;esac;fi
##############################################
clustalo-1.2.4/configure-21857-configured by $0, generated by GNU Autoconf 2.63,
clustalo-1.2.4/configure:21858: with options \\"`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`\\"
clustalo-1.2.4/configure-21859-
##############################################
clustalo-1.2.4/configure-21878- --*=*)
clustalo-1.2.4/configure:21879: ac_option=`expr "X$1" : 'X\([^=]*\)='`
clustalo-1.2.4/configure:21880: ac_optarg=`expr "X$1" : 'X[^=]*=\(.*\)'`
clustalo-1.2.4/configure-21881- ac_shift=:
##############################################
clustalo-1.2.4/configure-21900- case $ac_optarg in
clustalo-1.2.4/configure:21901: *\'*) ac_optarg=`$as_echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"` ;;
clustalo-1.2.4/configure-21902- esac
##############################################
clustalo-1.2.4/configure-21907- case $ac_optarg in
clustalo-1.2.4/configure:21908: *\'*) ac_optarg=`$as_echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"` ;;
clustalo-1.2.4/configure-21909- esac
##############################################
clustalo-1.2.4/configure-21979-delay_variable_subst='$delay_variable_subst'
clustalo-1.2.4/configure:21980:macro_version='`$ECHO "X$macro_version" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:21981:macro_revision='`$ECHO "X$macro_revision" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:21982:enable_shared='`$ECHO "X$enable_shared" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:21983:enable_static='`$ECHO "X$enable_static" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:21984:pic_mode='`$ECHO "X$pic_mode" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:21985:enable_fast_install='`$ECHO "X$enable_fast_install" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:21986:host_alias='`$ECHO "X$host_alias" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:21987:host='`$ECHO "X$host" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:21988:host_os='`$ECHO "X$host_os" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:21989:build_alias='`$ECHO "X$build_alias" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:21990:build='`$ECHO "X$build" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:21991:build_os='`$ECHO "X$build_os" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:21992:SED='`$ECHO "X$SED" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:21993:Xsed='`$ECHO "X$Xsed" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:21994:GREP='`$ECHO "X$GREP" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:21995:EGREP='`$ECHO "X$EGREP" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:21996:FGREP='`$ECHO "X$FGREP" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:21997:LD='`$ECHO "X$LD" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:21998:NM='`$ECHO "X$NM" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:21999:LN_S='`$ECHO "X$LN_S" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22000:max_cmd_len='`$ECHO "X$max_cmd_len" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22001:ac_objext='`$ECHO "X$ac_objext" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22002:exeext='`$ECHO "X$exeext" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22003:lt_unset='`$ECHO "X$lt_unset" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22004:lt_SP2NL='`$ECHO "X$lt_SP2NL" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22005:lt_NL2SP='`$ECHO "X$lt_NL2SP" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22006:reload_flag='`$ECHO "X$reload_flag" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22007:reload_cmds='`$ECHO "X$reload_cmds" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22008:OBJDUMP='`$ECHO "X$OBJDUMP" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22009:deplibs_check_method='`$ECHO "X$deplibs_check_method" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22010:file_magic_cmd='`$ECHO "X$file_magic_cmd" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22011:AR='`$ECHO "X$AR" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22012:AR_FLAGS='`$ECHO "X$AR_FLAGS" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22013:STRIP='`$ECHO "X$STRIP" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22014:RANLIB='`$ECHO "X$RANLIB" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22015:old_postinstall_cmds='`$ECHO "X$old_postinstall_cmds" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22016:old_postuninstall_cmds='`$ECHO "X$old_postuninstall_cmds" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22017:old_archive_cmds='`$ECHO "X$old_archive_cmds" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22018:CC='`$ECHO "X$CC" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22019:CFLAGS='`$ECHO "X$CFLAGS" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22020:compiler='`$ECHO "X$compiler" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22021:GCC='`$ECHO "X$GCC" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22022:lt_cv_sys_global_symbol_pipe='`$ECHO "X$lt_cv_sys_global_symbol_pipe" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22023:lt_cv_sys_global_symbol_to_cdecl='`$ECHO "X$lt_cv_sys_global_symbol_to_cdecl" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22024:lt_cv_sys_global_symbol_to_c_name_address='`$ECHO "X$lt_cv_sys_global_symbol_to_c_name_address" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22025:lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='`$ECHO "X$lt_cv_sys_global_symbol_to_c_name_address_lib_prefix" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22026:objdir='`$ECHO "X$objdir" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22027:SHELL='`$ECHO "X$SHELL" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22028:ECHO='`$ECHO "X$ECHO" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22029:MAGIC_CMD='`$ECHO "X$MAGIC_CMD" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22030:lt_prog_compiler_no_builtin_flag='`$ECHO "X$lt_prog_compiler_no_builtin_flag" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22031:lt_prog_compiler_wl='`$ECHO "X$lt_prog_compiler_wl" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22032:lt_prog_compiler_pic='`$ECHO "X$lt_prog_compiler_pic" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22033:lt_prog_compiler_static='`$ECHO "X$lt_prog_compiler_static" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22034:lt_cv_prog_compiler_c_o='`$ECHO "X$lt_cv_prog_compiler_c_o" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22035:need_locks='`$ECHO "X$need_locks" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22036:DSYMUTIL='`$ECHO "X$DSYMUTIL" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22037:NMEDIT='`$ECHO "X$NMEDIT" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22038:LIPO='`$ECHO "X$LIPO" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22039:OTOOL='`$ECHO "X$OTOOL" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22040:OTOOL64='`$ECHO "X$OTOOL64" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22041:libext='`$ECHO "X$libext" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22042:shrext_cmds='`$ECHO "X$shrext_cmds" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22043:extract_expsyms_cmds='`$ECHO "X$extract_expsyms_cmds" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22044:archive_cmds_need_lc='`$ECHO "X$archive_cmds_need_lc" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22045:enable_shared_with_static_runtimes='`$ECHO "X$enable_shared_with_static_runtimes" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22046:export_dynamic_flag_spec='`$ECHO "X$export_dynamic_flag_spec" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22047:whole_archive_flag_spec='`$ECHO "X$whole_archive_flag_spec" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22048:compiler_needs_object='`$ECHO "X$compiler_needs_object" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22049:old_archive_from_new_cmds='`$ECHO "X$old_archive_from_new_cmds" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22050:old_archive_from_expsyms_cmds='`$ECHO "X$old_archive_from_expsyms_cmds" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22051:archive_cmds='`$ECHO "X$archive_cmds" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22052:archive_expsym_cmds='`$ECHO "X$archive_expsym_cmds" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22053:module_cmds='`$ECHO "X$module_cmds" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22054:module_expsym_cmds='`$ECHO "X$module_expsym_cmds" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22055:with_gnu_ld='`$ECHO "X$with_gnu_ld" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22056:allow_undefined_flag='`$ECHO "X$allow_undefined_flag" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22057:no_undefined_flag='`$ECHO "X$no_undefined_flag" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22058:hardcode_libdir_flag_spec='`$ECHO "X$hardcode_libdir_flag_spec" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22059:hardcode_libdir_flag_spec_ld='`$ECHO "X$hardcode_libdir_flag_spec_ld" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22060:hardcode_libdir_separator='`$ECHO "X$hardcode_libdir_separator" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22061:hardcode_direct='`$ECHO "X$hardcode_direct" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22062:hardcode_direct_absolute='`$ECHO "X$hardcode_direct_absolute" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22063:hardcode_minus_L='`$ECHO "X$hardcode_minus_L" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22064:hardcode_shlibpath_var='`$ECHO "X$hardcode_shlibpath_var" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22065:hardcode_automatic='`$ECHO "X$hardcode_automatic" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22066:inherit_rpath='`$ECHO "X$inherit_rpath" | $Xsed -e "$delay_single_quote_subst"`'
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clustalo-1.2.4/configure:22068:fix_srcfile_path='`$ECHO "X$fix_srcfile_path" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22069:always_export_symbols='`$ECHO "X$always_export_symbols" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22070:export_symbols_cmds='`$ECHO "X$export_symbols_cmds" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22071:exclude_expsyms='`$ECHO "X$exclude_expsyms" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22072:include_expsyms='`$ECHO "X$include_expsyms" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22073:prelink_cmds='`$ECHO "X$prelink_cmds" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22074:file_list_spec='`$ECHO "X$file_list_spec" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22075:variables_saved_for_relink='`$ECHO "X$variables_saved_for_relink" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22076:need_lib_prefix='`$ECHO "X$need_lib_prefix" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22077:need_version='`$ECHO "X$need_version" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22078:version_type='`$ECHO "X$version_type" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22079:runpath_var='`$ECHO "X$runpath_var" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22080:shlibpath_var='`$ECHO "X$shlibpath_var" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22081:shlibpath_overrides_runpath='`$ECHO "X$shlibpath_overrides_runpath" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22082:libname_spec='`$ECHO "X$libname_spec" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22083:library_names_spec='`$ECHO "X$library_names_spec" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22084:soname_spec='`$ECHO "X$soname_spec" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22085:postinstall_cmds='`$ECHO "X$postinstall_cmds" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22086:postuninstall_cmds='`$ECHO "X$postuninstall_cmds" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22087:finish_cmds='`$ECHO "X$finish_cmds" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22088:finish_eval='`$ECHO "X$finish_eval" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22089:hardcode_into_libs='`$ECHO "X$hardcode_into_libs" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22090:sys_lib_search_path_spec='`$ECHO "X$sys_lib_search_path_spec" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22091:sys_lib_dlsearch_path_spec='`$ECHO "X$sys_lib_dlsearch_path_spec" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22092:hardcode_action='`$ECHO "X$hardcode_action" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22093:enable_dlopen='`$ECHO "X$enable_dlopen" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22094:enable_dlopen_self='`$ECHO "X$enable_dlopen_self" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22095:enable_dlopen_self_static='`$ECHO "X$enable_dlopen_self_static" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22096:old_striplib='`$ECHO "X$old_striplib" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22097:striplib='`$ECHO "X$striplib" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22098:compiler_lib_search_dirs='`$ECHO "X$compiler_lib_search_dirs" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22099:predep_objects='`$ECHO "X$predep_objects" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22100:postdep_objects='`$ECHO "X$postdep_objects" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22101:predeps='`$ECHO "X$predeps" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22102:postdeps='`$ECHO "X$postdeps" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22103:compiler_lib_search_path='`$ECHO "X$compiler_lib_search_path" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22104:LD_CXX='`$ECHO "X$LD_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22105:old_archive_cmds_CXX='`$ECHO "X$old_archive_cmds_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22106:compiler_CXX='`$ECHO "X$compiler_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22107:GCC_CXX='`$ECHO "X$GCC_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22108:lt_prog_compiler_no_builtin_flag_CXX='`$ECHO "X$lt_prog_compiler_no_builtin_flag_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22109:lt_prog_compiler_wl_CXX='`$ECHO "X$lt_prog_compiler_wl_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22110:lt_prog_compiler_pic_CXX='`$ECHO "X$lt_prog_compiler_pic_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22111:lt_prog_compiler_static_CXX='`$ECHO "X$lt_prog_compiler_static_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22112:lt_cv_prog_compiler_c_o_CXX='`$ECHO "X$lt_cv_prog_compiler_c_o_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22113:archive_cmds_need_lc_CXX='`$ECHO "X$archive_cmds_need_lc_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22114:enable_shared_with_static_runtimes_CXX='`$ECHO "X$enable_shared_with_static_runtimes_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22115:export_dynamic_flag_spec_CXX='`$ECHO "X$export_dynamic_flag_spec_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22116:whole_archive_flag_spec_CXX='`$ECHO "X$whole_archive_flag_spec_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22117:compiler_needs_object_CXX='`$ECHO "X$compiler_needs_object_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22118:old_archive_from_new_cmds_CXX='`$ECHO "X$old_archive_from_new_cmds_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22119:old_archive_from_expsyms_cmds_CXX='`$ECHO "X$old_archive_from_expsyms_cmds_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22120:archive_cmds_CXX='`$ECHO "X$archive_cmds_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22121:archive_expsym_cmds_CXX='`$ECHO "X$archive_expsym_cmds_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22122:module_cmds_CXX='`$ECHO "X$module_cmds_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22123:module_expsym_cmds_CXX='`$ECHO "X$module_expsym_cmds_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22124:with_gnu_ld_CXX='`$ECHO "X$with_gnu_ld_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22125:allow_undefined_flag_CXX='`$ECHO "X$allow_undefined_flag_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22126:no_undefined_flag_CXX='`$ECHO "X$no_undefined_flag_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22127:hardcode_libdir_flag_spec_CXX='`$ECHO "X$hardcode_libdir_flag_spec_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22128:hardcode_libdir_flag_spec_ld_CXX='`$ECHO "X$hardcode_libdir_flag_spec_ld_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22129:hardcode_libdir_separator_CXX='`$ECHO "X$hardcode_libdir_separator_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22130:hardcode_direct_CXX='`$ECHO "X$hardcode_direct_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22131:hardcode_direct_absolute_CXX='`$ECHO "X$hardcode_direct_absolute_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22132:hardcode_minus_L_CXX='`$ECHO "X$hardcode_minus_L_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22133:hardcode_shlibpath_var_CXX='`$ECHO "X$hardcode_shlibpath_var_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22134:hardcode_automatic_CXX='`$ECHO "X$hardcode_automatic_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22135:inherit_rpath_CXX='`$ECHO "X$inherit_rpath_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22136:link_all_deplibs_CXX='`$ECHO "X$link_all_deplibs_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22137:fix_srcfile_path_CXX='`$ECHO "X$fix_srcfile_path_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22138:always_export_symbols_CXX='`$ECHO "X$always_export_symbols_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22139:export_symbols_cmds_CXX='`$ECHO "X$export_symbols_cmds_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22140:exclude_expsyms_CXX='`$ECHO "X$exclude_expsyms_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22141:include_expsyms_CXX='`$ECHO "X$include_expsyms_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22142:prelink_cmds_CXX='`$ECHO "X$prelink_cmds_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22143:file_list_spec_CXX='`$ECHO "X$file_list_spec_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22144:hardcode_action_CXX='`$ECHO "X$hardcode_action_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22145:compiler_lib_search_dirs_CXX='`$ECHO "X$compiler_lib_search_dirs_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22146:predep_objects_CXX='`$ECHO "X$predep_objects_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22147:postdep_objects_CXX='`$ECHO "X$postdep_objects_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22148:predeps_CXX='`$ECHO "X$predeps_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22149:postdeps_CXX='`$ECHO "X$postdeps_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure:22150:compiler_lib_search_path_CXX='`$ECHO "X$compiler_lib_search_path_CXX" | $Xsed -e "$delay_single_quote_subst"`'
clustalo-1.2.4/configure-22151-
##############################################
clustalo-1.2.4/configure-22246-compiler_lib_search_path_CXX; do
clustalo-1.2.4/configure:22247: case \`eval \\\\\$ECHO "X\\\\\$\$var"\` in
clustalo-1.2.4/configure-22248- *[\\\\\\\`\\"\\\$]*)
clustalo-1.2.4/configure:22249: eval "lt_\$var=\\\\\\"\\\`\\\$ECHO \\"X\\\$\$var\\" | \\\$Xsed -e \\"\\\$sed_quote_subst\\"\\\`\\\\\\""
clustalo-1.2.4/configure-22250- ;;
##############################################
clustalo-1.2.4/configure-22284-prelink_cmds_CXX; do
clustalo-1.2.4/configure:22285: case \`eval \\\\\$ECHO "X\\\\\$\$var"\` in
clustalo-1.2.4/configure-22286- *[\\\\\\\`\\"\\\$]*)
clustalo-1.2.4/configure:22287: eval "lt_\$var=\\\\\\"\\\`\\\$ECHO \\"X\\\$\$var\\" | \\\$Xsed -e \\"\\\$double_quote_subst\\" -e \\"\\\$sed_quote_subst\\" -e \\"\\\$delay_variable_subst\\"\\\`\\\\\\""
clustalo-1.2.4/configure-22288- ;;
##############################################
clustalo-1.2.4/configure-22296-case \$lt_ECHO in
clustalo-1.2.4/configure:22297:*'\\\$0 --fallback-echo"') lt_ECHO=\`\$ECHO "X\$lt_ECHO" | \$Xsed -e 's/\\\\\\\\\\\\\\\$0 --fallback-echo"\$/\$0 --fallback-echo"/'\`
clustalo-1.2.4/configure-22298- ;;
##############################################
clustalo-1.2.4/configure-22396-ac_cr=''
clustalo-1.2.4/configure:22397:ac_cs_awk_cr=`$AWK 'BEGIN { print "a\rb" }' </dev/null 2>/dev/null`
clustalo-1.2.4/configure-22398-if test "$ac_cs_awk_cr" = "a${ac_cr}b"; then
##############################################
clustalo-1.2.4/configure-22415- { (exit 1); exit 1; }; }
clustalo-1.2.4/configure:22416:ac_delim_num=`echo "$ac_subst_vars" | grep -c '$'`
clustalo-1.2.4/configure-22417-ac_delim='%!_!# '
##############################################
clustalo-1.2.4/configure-22423-
clustalo-1.2.4/configure:22424: ac_delim_n=`sed -n "s/.*$ac_delim\$/X/p" conf$$subs.awk | grep -c X`
clustalo-1.2.4/configure-22425- if test $ac_delim_n = $ac_delim_num; then
##############################################
clustalo-1.2.4/configure-22557-for ac_last_try in false false :; do
clustalo-1.2.4/configure:22558: ac_t=`sed -n "/$ac_delim/p" confdefs.h`
clustalo-1.2.4/configure-22559- if test -z "$ac_t"; then
##############################################
clustalo-1.2.4/configure-22697- esac
clustalo-1.2.4/configure:22698: case $ac_f in *\'*) ac_f=`$as_echo "$ac_f" | sed "s/'/'\\\\\\\\''/g"`;; esac
clustalo-1.2.4/configure-22699- ac_file_inputs="$ac_file_inputs '$ac_f'"
##############################################
clustalo-1.2.4/configure-22760- case $as_dir in #(
clustalo-1.2.4/configure:22761: *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
clustalo-1.2.4/configure-22762- *) as_qdir=$as_dir;;
##############################################
clustalo-1.2.4/configure-22798-*)
clustalo-1.2.4/configure:22799: ac_dir_suffix=/`$as_echo "$ac_dir" | sed 's|^\.[\\/]||'`
clustalo-1.2.4/configure-22800- # A ".." for each directory in $ac_dir_suffix.
clustalo-1.2.4/configure:22801: ac_top_builddir_sub=`$as_echo "$ac_dir_suffix" | sed 's|/[^\\/]*|/..|g;s|/||'`
clustalo-1.2.4/configure-22802- case $ac_top_builddir_sub in
##############################################
clustalo-1.2.4/configure-22861-'
clustalo-1.2.4/configure:22862:case `eval "sed -n \"\$ac_sed_dataroot\" $ac_file_inputs"` in
clustalo-1.2.4/configure-22863-*datarootdir*) ac_datarootdir_seen=yes;;
##############################################
clustalo-1.2.4/configure-22878-
clustalo-1.2.4/configure:22879:# Neutralize VPATH when `$srcdir' = `.'.
clustalo-1.2.4/configure-22880-# Shell code in configure.ac might set extrasub.
##############################################
clustalo-1.2.4/configure-22908-test -z "$ac_datarootdir_hack$ac_datarootdir_seen" &&
clustalo-1.2.4/configure:22909: { ac_out=`sed -n '/\${datarootdir}/p' "$tmp/out"`; test -n "$ac_out"; } &&
clustalo-1.2.4/configure:22910: { ac_out=`sed -n '/^[ ]*datarootdir[ ]*:*=/p' "$tmp/out"`; test -z "$ac_out"; } &&
clustalo-1.2.4/configure-22911- { $as_echo "$as_me:$LINENO: WARNING: $ac_file contains a reference to the variable \`datarootdir'
##############################################
clustalo-1.2.4/configure-22961- * )
clustalo-1.2.4/configure:22962: _am_stamp_count=`expr $_am_stamp_count + 1` ;;
clustalo-1.2.4/configure-22963- esac
##############################################
clustalo-1.2.4/configure-22997- "src/clustal-omega-config.h":C) ac_prefix_conf_OUT=`echo src/clustal-omega-config.h`
clustalo-1.2.4/configure:22998:ac_prefix_conf_DEF=`echo _$ac_prefix_conf_OUT | sed -e "y:abcdefghijklmnopqrstuvwxyz:ABCDEFGHIJKLMNOPQRSTUVWXYZ:" -e "s/[^abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ]/_/g"`
clustalo-1.2.4/configure:22999:ac_prefix_conf_PKG=`echo $PACKAGE`
clustalo-1.2.4/configure:23000:ac_prefix_conf_LOW=`echo _$ac_prefix_conf_PKG | sed -e "y:ABCDEFGHIJKLMNOPQRSTUVWXYZ-:abcdefghijklmnopqrstuvwxyz_:"`
clustalo-1.2.4/configure:23001:ac_prefix_conf_UPP=`echo $ac_prefix_conf_PKG | sed -e "y:abcdefghijklmnopqrstuvwxyz-:ABCDEFGHIJKLMNOPQRSTUVWXYZ_:" -e "/^[0123456789]/s/^/_/"`
clustalo-1.2.4/configure-23002-ac_prefix_conf_INP=`echo "" | sed -e 's/ *//'`
##############################################
clustalo-1.2.4/configure-23013- case "$ac_prefix_conf_OUT" in
clustalo-1.2.4/configure:23014: */*) ac_prefix_conf_INP=`basename "$ac_prefix_conf_OUT"`
clustalo-1.2.4/configure-23015- ;;
clustalo-1.2.4/configure:23016: *-*) ac_prefix_conf_INP=`echo "$ac_prefix_conf_OUT" | sed -e "s/[abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789_]*-//"`
clustalo-1.2.4/configure-23017- ;;
##############################################
clustalo-1.2.4/configure-23085- case $as_dir in #(
clustalo-1.2.4/configure:23086: *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
clustalo-1.2.4/configure-23087- *) as_qdir=$as_dir;;
##############################################
clustalo-1.2.4/configure-23142- # Strip MF so we end up with the name of the file.
clustalo-1.2.4/configure:23143: mf=`echo "$mf" | sed -e 's/:.*$//'`
clustalo-1.2.4/configure-23144- # Check whether this is an Automake generated Makefile or not.
##############################################
clustalo-1.2.4/configure-23179- # from the Makefile without running `make'.
clustalo-1.2.4/configure:23180: DEPDIR=`sed -n 's/^DEPDIR = //p' < "$mf"`
clustalo-1.2.4/configure-23181- test -z "$DEPDIR" && continue
clustalo-1.2.4/configure:23182: am__include=`sed -n 's/^am__include = //p' < "$mf"`
clustalo-1.2.4/configure-23183- test -z "am__include" && continue
clustalo-1.2.4/configure:23184: am__quote=`sed -n 's/^am__quote = //p' < "$mf"`
clustalo-1.2.4/configure-23185- # When using ansi2knr, U may be empty or an underscore; expand it
clustalo-1.2.4/configure:23186: U=`sed -n 's/^U = //p' < "$mf"`
clustalo-1.2.4/configure-23187- # Find all dependency output files, they are included files with
##############################################
clustalo-1.2.4/configure-23226- case $as_dir in #(
clustalo-1.2.4/configure:23227: *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
clustalo-1.2.4/configure-23228- *) as_qdir=$as_dir;;
##############################################
clustalo-1.2.4/configure-23280-
clustalo-1.2.4/configure:23281:# `$ECHO "$ofile" | sed 's%^.*/%%'` - Provide generalized library-building support services.
clustalo-1.2.4/configure-23282-# Generated automatically by $as_me ($PACKAGE$TIMESTAMP) $VERSION
##############################################
clustalo-1.2.4/configure-23809- # Extract subdirectory from the argument.
clustalo-1.2.4/configure:23810: func_dirname_result=`$ECHO "X${1}" | $Xsed -e "$dirname"`
clustalo-1.2.4/configure-23811- if test "X$func_dirname_result" = "X${1}"; then
##############################################
clustalo-1.2.4/configure-23820-{
clustalo-1.2.4/configure:23821: func_basename_result=`$ECHO "X${1}" | $Xsed -e "$basename"`
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##############################################
clustalo-1.2.4/configure-23847-{
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clustalo-1.2.4/configure-23860-{
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clustalo-1.2.4/configure-23866-{
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clustalo-1.2.4/config.guess-195- *)
clustalo-1.2.4/config.guess:196: release=`echo ${UNAME_RELEASE}|sed -e 's/[-_].*/\./'`
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clustalo-1.2.4/config.guess-225- *5.*)
clustalo-1.2.4/config.guess:226: UNAME_RELEASE=`/usr/sbin/sizer -v | awk '{print $4}'`
clustalo-1.2.4/config.guess-227- ;;
##############################################
clustalo-1.2.4/config.guess-232- # types through head -n 1, so we only detect the type of CPU 0.
clustalo-1.2.4/config.guess:233: ALPHA_CPU_TYPE=`/usr/sbin/psrinfo -v | sed -n -e 's/^ The alpha \(.*\) processor.*$/\1/p' | head -n 1`
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##############################################
clustalo-1.2.4/config.guess-270- # 1.2 uses "1.2" for uname -r.
clustalo-1.2.4/config.guess:271: echo ${UNAME_MACHINE}-dec-osf`echo ${UNAME_RELEASE} | sed -e 's/^[PVTX]//' | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz'`
clustalo-1.2.4/config.guess-272- exit ;;
##############################################
clustalo-1.2.4/config.guess-327- sun4H:SunOS:5.*:*)
clustalo-1.2.4/config.guess:328: echo sparc-hal-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
clustalo-1.2.4/config.guess-329- exit ;;
clustalo-1.2.4/config.guess-330- sun4*:SunOS:5.*:* | tadpole*:SunOS:5.*:*)
clustalo-1.2.4/config.guess:331: echo sparc-sun-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
clustalo-1.2.4/config.guess-332- exit ;;
clustalo-1.2.4/config.guess-333- i86pc:SunOS:5.*:* | i86xen:SunOS:5.*:*)
clustalo-1.2.4/config.guess:334: echo i386-pc-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
clustalo-1.2.4/config.guess-335- exit ;;
##############################################
clustalo-1.2.4/config.guess-339- # it's likely to be more like Solaris than SunOS4.
clustalo-1.2.4/config.guess:340: echo sparc-sun-solaris3`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
clustalo-1.2.4/config.guess-341- exit ;;
##############################################
clustalo-1.2.4/config.guess-348- # Japanese Language versions have a version number like `4.1.3-JL'.
clustalo-1.2.4/config.guess:349: echo sparc-sun-sunos`echo ${UNAME_RELEASE}|sed -e 's/-/_/'`
clustalo-1.2.4/config.guess-350- exit ;;
##############################################
clustalo-1.2.4/config.guess-354- sun*:*:4.2BSD:*)
clustalo-1.2.4/config.guess:355: UNAME_RELEASE=`(sed 1q /etc/motd | awk '{print substr($5,1,3)}') 2>/dev/null`
clustalo-1.2.4/config.guess-356- test "x${UNAME_RELEASE}" = "x" && UNAME_RELEASE=3
##############################################
clustalo-1.2.4/config.guess-436- $CC_FOR_BUILD -o $dummy $dummy.c &&
clustalo-1.2.4/config.guess:437: dummyarg=`echo "${UNAME_RELEASE}" | sed -n 's/\([0-9]*\).*/\1/p'` &&
clustalo-1.2.4/config.guess:438: SYSTEM_NAME=`$dummy $dummyarg` &&
clustalo-1.2.4/config.guess-439- { echo "$SYSTEM_NAME"; exit; }
##############################################
clustalo-1.2.4/config.guess-492- *:IRIX*:*:*)
clustalo-1.2.4/config.guess:493: echo mips-sgi-irix`echo ${UNAME_RELEASE}|sed -e 's/-/_/g'`
clustalo-1.2.4/config.guess-494- exit ;;
##############################################
clustalo-1.2.4/config.guess-522-EOF
clustalo-1.2.4/config.guess:523: if $CC_FOR_BUILD -o $dummy $dummy.c && SYSTEM_NAME=`$dummy`
clustalo-1.2.4/config.guess-524- then
##############################################
clustalo-1.2.4/config.guess-535- *:AIX:*:[456])
clustalo-1.2.4/config.guess:536: IBM_CPU_ID=`/usr/sbin/lsdev -C -c processor -S available | sed 1q | awk '{ print $1 }'`
clustalo-1.2.4/config.guess-537- if /usr/sbin/lsattr -El ${IBM_CPU_ID} | grep ' POWER' >/dev/null 2>&1; then
##############################################
clustalo-1.2.4/config.guess-570- 9000/[34678]??:HP-UX:*:*)
clustalo-1.2.4/config.guess:571: HPUX_REV=`echo ${UNAME_RELEASE}|sed -e 's/[^.]*.[0B]*//'`
clustalo-1.2.4/config.guess-572- case "${UNAME_MACHINE}" in
##############################################
clustalo-1.2.4/config.guess-624-EOF
clustalo-1.2.4/config.guess:625: (CCOPTS= $CC_FOR_BUILD -o $dummy $dummy.c 2>/dev/null) && HP_ARCH=`$dummy`
clustalo-1.2.4/config.guess-626- test -z "$HP_ARCH" && HP_ARCH=hppa
##############################################
clustalo-1.2.4/config.guess-652- ia64:HP-UX:*:*)
clustalo-1.2.4/config.guess:653: HPUX_REV=`echo ${UNAME_RELEASE}|sed -e 's/[^.]*.[0B]*//'`
clustalo-1.2.4/config.guess-654- echo ia64-hp-hpux${HPUX_REV}
##############################################
clustalo-1.2.4/config.guess-682-EOF
clustalo-1.2.4/config.guess:683: $CC_FOR_BUILD -o $dummy $dummy.c && SYSTEM_NAME=`$dummy` &&
clustalo-1.2.4/config.guess-684- { echo "$SYSTEM_NAME"; exit; }
##############################################
clustalo-1.2.4/config.guess-753- FUJITSU_SYS=`uname -p | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/\///'`
clustalo-1.2.4/config.guess:754: FUJITSU_REL=`echo ${UNAME_RELEASE} | sed -e 's/ /_/'`
clustalo-1.2.4/config.guess-755- echo "${FUJITSU_PROC}-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}"
##############################################
clustalo-1.2.4/config.guess-758- FUJITSU_SYS=`uname -p | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/\///'`
clustalo-1.2.4/config.guess:759: FUJITSU_REL=`echo ${UNAME_RELEASE} | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/ /_/'`
clustalo-1.2.4/config.guess-760- echo "sparc-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}"
##############################################
clustalo-1.2.4/config.guess-773- pc98)
clustalo-1.2.4/config.guess:774: echo i386-unknown-freebsd`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'` ;;
clustalo-1.2.4/config.guess-775- amd64)
clustalo-1.2.4/config.guess:776: echo x86_64-unknown-freebsd`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'` ;;
clustalo-1.2.4/config.guess-777- *)
clustalo-1.2.4/config.guess:778: echo ${UNAME_MACHINE}-unknown-freebsd`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'` ;;
clustalo-1.2.4/config.guess-779- esac
##############################################
clustalo-1.2.4/config.guess-824- prep*:SunOS:5.*:*)
clustalo-1.2.4/config.guess:825: echo powerpcle-unknown-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
clustalo-1.2.4/config.guess-826- exit ;;
##############################################
clustalo-1.2.4/config.guess-828- # the GNU system
clustalo-1.2.4/config.guess:829: echo `echo ${UNAME_MACHINE}|sed -e 's,[-/].*$,,'`-unknown-gnu`echo ${UNAME_RELEASE}|sed -e 's,/.*$,,'`
clustalo-1.2.4/config.guess-830- exit ;;
##############################################
clustalo-1.2.4/config.guess-832- # other systems with GNU libc and userland
clustalo-1.2.4/config.guess:833: echo ${UNAME_MACHINE}-unknown-`echo ${UNAME_SYSTEM} | sed 's,^[^/]*/,,' | tr '[A-Z]' '[a-z]'``echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'`-gnu
clustalo-1.2.4/config.guess-834- exit ;;
##############################################
clustalo-1.2.4/config.guess-1067- i*86:*:4.*:* | i*86:SYSTEM_V:4.*:*)
clustalo-1.2.4/config.guess:1068: UNAME_REL=`echo ${UNAME_RELEASE} | sed 's/\/MP$//'`
clustalo-1.2.4/config.guess-1069- if grep Novell /usr/include/link.h >/dev/null 2>/dev/null; then
##############################################
clustalo-1.2.4/config.guess-1308- *:DragonFly:*:*)
clustalo-1.2.4/config.guess:1309: echo ${UNAME_MACHINE}-unknown-dragonfly`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'`
clustalo-1.2.4/config.guess-1310- exit ;;
##############################################
clustalo-1.2.4/config.guess-1321- i*86:skyos:*:*)
clustalo-1.2.4/config.guess:1322: echo ${UNAME_MACHINE}-pc-skyos`echo ${UNAME_RELEASE}` | sed -e 's/ .*$//'
clustalo-1.2.4/config.guess-1323- exit ;;
##############################################
clustalo-1.2.4/config.guess-1446-
clustalo-1.2.4/config.guess:1447:$CC_FOR_BUILD -o $dummy $dummy.c 2>/dev/null && SYSTEM_NAME=`$dummy` &&
clustalo-1.2.4/config.guess-1448- { echo "$SYSTEM_NAME"; exit; }
##############################################
clustalo-1.2.4/ltmain.sh-161- # Extract subdirectory from the argument.
clustalo-1.2.4/ltmain.sh:162: func_dirname_result=`$ECHO "X${1}" | $Xsed -e "$dirname"`
clustalo-1.2.4/ltmain.sh-163- if test "X$func_dirname_result" = "X${1}"; then
##############################################
clustalo-1.2.4/ltmain.sh-167- fi
clustalo-1.2.4/ltmain.sh:168: func_basename_result=`$ECHO "X${1}" | $Xsed -e "$basename"`
clustalo-1.2.4/ltmain.sh-169-}
##############################################
clustalo-1.2.4/ltmain.sh-193- progdir=$func_dirname_result
clustalo-1.2.4/ltmain.sh:194: progdir=`cd "$progdir" && pwd`
clustalo-1.2.4/ltmain.sh-195- progpath="$progdir/$progname"
##############################################
clustalo-1.2.4/ltmain.sh-221-# Since each input `\' is now two `\'s, look for any number of runs of
clustalo-1.2.4/ltmain.sh:222:# four `\'s followed by two `\'s and then a '$'. `\' that '$'.
clustalo-1.2.4/ltmain.sh-223-bs='\\'
##############################################
clustalo-1.2.4/ltmain.sh-328- # ...otherwise throw away the child directory and loop
clustalo-1.2.4/ltmain.sh:329: my_directory_path=`$ECHO "X$my_directory_path" | $Xsed -e "$dirname"`
clustalo-1.2.4/ltmain.sh-330- done
clustalo-1.2.4/ltmain.sh:331: my_dir_list=`$ECHO "X$my_dir_list" | $Xsed -e 's,:*$,,'`
clustalo-1.2.4/ltmain.sh-332-
##############################################
clustalo-1.2.4/ltmain.sh-363- # If mktemp works, use that first and foremost
clustalo-1.2.4/ltmain.sh:364: my_tmpdir=`mktemp -d "${my_template}-XXXXXXXX" 2>/dev/null`
clustalo-1.2.4/ltmain.sh-365-
##############################################
clustalo-1.2.4/ltmain.sh-394- *[\\\`\"\$]*)
clustalo-1.2.4/ltmain.sh:395: func_quote_for_eval_unquoted_result=`$ECHO "X$1" | $Xsed -e "$sed_quote_subst"` ;;
clustalo-1.2.4/ltmain.sh-396- *)
##############################################
clustalo-1.2.4/ltmain.sh-536- s/\$with_gnu_ld/'"$with_gnu_ld"'/
clustalo-1.2.4/ltmain.sh:537: s/\$automake_version/'"`(automake --version) 2>/dev/null |$SED 1q`"'/
clustalo-1.2.4/ltmain.sh:538: s/\$autoconf_version/'"`(autoconf --version) 2>/dev/null |$SED 1q`"'/
clustalo-1.2.4/ltmain.sh-539- p
##############################################
clustalo-1.2.4/ltmain.sh-565- :
clustalo-1.2.4/ltmain.sh:566:elif test "X`{ $ECHO '\t'; } 2>/dev/null`" = 'X\t'; then
clustalo-1.2.4/ltmain.sh-567- # Yippee, $ECHO works!
##############################################
clustalo-1.2.4/ltmain.sh-685- # quotes we have to do it in 2 steps:
clustalo-1.2.4/ltmain.sh:686: extractedcf=`$SED -n -e "$sed_extractcf" < "$progpath"`
clustalo-1.2.4/ltmain.sh-687- eval "$extractedcf"
##############################################
clustalo-1.2.4/ltmain.sh-1021- # but not from the CC environment variable when configure was run.
clustalo-1.2.4/ltmain.sh:1022: " $CC "* | "$CC "* | " `$ECHO $CC` "* | "`$ECHO $CC` "* | " $CC_quoted"* | "$CC_quoted "* | " `$ECHO $CC_quoted` "* | "`$ECHO $CC_quoted` "*) ;;
clustalo-1.2.4/ltmain.sh-1023- # Blanks at the start of $base_compile will cause this to fail
##############################################
clustalo-1.2.4/ltmain.sh-1028- # Evaluate the configuration.
clustalo-1.2.4/ltmain.sh:1029: eval "`${SED} -n -e '/^# ### BEGIN LIBTOOL TAG CONFIG: '$z'$/,/^# ### END LIBTOOL TAG CONFIG: '$z'$/p' < $progpath`"
clustalo-1.2.4/ltmain.sh-1030- CC_quoted=
##############################################
clustalo-1.2.4/ltmain.sh-1036- case "$@ " in
clustalo-1.2.4/ltmain.sh:1037: " $CC "* | "$CC "* | " `$ECHO $CC` "* | "`$ECHO $CC` "* | " $CC_quoted"* | "$CC_quoted "* | " `$ECHO $CC_quoted` "* | "`$ECHO $CC_quoted` "*)
clustalo-1.2.4/ltmain.sh-1038- # The compiler in the base compile command matches
##############################################
clustalo-1.2.4/ltmain.sh-1213- *.[cCFSifmso] | \
clustalo-1.2.4/ltmain.sh:1214: *.ada | *.adb | *.ads | *.asm | \
clustalo-1.2.4/ltmain.sh-1215- *.c++ | *.cc | *.ii | *.class | *.cpp | *.cxx | \
##############################################
clustalo-1.2.4/ltmain.sh-1290- if test "$compiler_c_o" = no; then
clustalo-1.2.4/ltmain.sh:1291: output_obj=`$ECHO "X$srcfile" | $Xsed -e 's%^.*/%%' -e 's%\.[^.]*$%%'`.${objext}
clustalo-1.2.4/ltmain.sh-1292- lockfile="$output_obj.lock"
##############################################
clustalo-1.2.4/ltmain.sh-1309-*** ERROR, $lockfile exists and contains:
clustalo-1.2.4/ltmain.sh:1310:`cat $lockfile 2>/dev/null`
clustalo-1.2.4/ltmain.sh-1311-
##############################################
clustalo-1.2.4/ltmain.sh-1358- if test "$need_locks" = warn &&
clustalo-1.2.4/ltmain.sh:1359: test "X`cat $lockfile 2>/dev/null`" != "X$srcfile"; then
clustalo-1.2.4/ltmain.sh-1360- $ECHO "\
clustalo-1.2.4/ltmain.sh-1361-*** ERROR, $lockfile contains:
clustalo-1.2.4/ltmain.sh:1362:`cat $lockfile 2>/dev/null`
clustalo-1.2.4/ltmain.sh-1363-
##############################################
clustalo-1.2.4/ltmain.sh-1407- if test "$need_locks" = warn &&
clustalo-1.2.4/ltmain.sh:1408: test "X`cat $lockfile 2>/dev/null`" != "X$srcfile"; then
clustalo-1.2.4/ltmain.sh-1409- $ECHO "\
clustalo-1.2.4/ltmain.sh-1410-*** ERROR, $lockfile contains:
clustalo-1.2.4/ltmain.sh:1411:`cat $lockfile 2>/dev/null`
clustalo-1.2.4/ltmain.sh-1412-
##############################################
clustalo-1.2.4/ltmain.sh-1665- test -n "$library_names" && \
clustalo-1.2.4/ltmain.sh:1666: func_warning "\`$file' was not linked with \`-export-dynamic'"
clustalo-1.2.4/ltmain.sh-1667- continue
##############################################
clustalo-1.2.4/ltmain.sh-1676- if test ! -f "$dir/$dlname"; then
clustalo-1.2.4/ltmain.sh:1677: func_fatal_error "cannot find \`$dlname' in \`$dir' or \`$dir/$objdir'"
clustalo-1.2.4/ltmain.sh-1678- fi
##############################################
clustalo-1.2.4/ltmain.sh-1694- # Get the absolute pathname.
clustalo-1.2.4/ltmain.sh:1695: absdir=`cd "$dir" && pwd`
clustalo-1.2.4/ltmain.sh-1696- test -n "$absdir" && dir="$absdir"
##############################################
clustalo-1.2.4/ltmain.sh-2012- # Determine the prefix the user has applied to our future dir.
clustalo-1.2.4/ltmain.sh:2013: inst_prefix_dir=`$ECHO "X$destdir" | $Xsed -e "s%$libdir\$%%"`
clustalo-1.2.4/ltmain.sh-2014-
##############################################
clustalo-1.2.4/ltmain.sh-2025- # Stick the inst_prefix_dir data into the link command.
clustalo-1.2.4/ltmain.sh:2026: relink_command=`$ECHO "X$relink_command" | $Xsed -e "s%@inst_prefix_dir@%-inst-prefix-dir $inst_prefix_dir%"`
clustalo-1.2.4/ltmain.sh-2027- else
clustalo-1.2.4/ltmain.sh:2028: relink_command=`$ECHO "X$relink_command" | $Xsed -e "s%@inst_prefix_dir@%%"`
clustalo-1.2.4/ltmain.sh-2029- fi
##############################################
clustalo-1.2.4/ltmain.sh-2185- fi
clustalo-1.2.4/ltmain.sh:2186: libfile="$libdir/"`$ECHO "X$lib" | $Xsed -e 's%^.*/%%g'` ### testsuite: skip nested quoting test
clustalo-1.2.4/ltmain.sh-2187- if test -n "$libdir" && test ! -f "$libfile"; then
clustalo-1.2.4/ltmain.sh:2188: func_warning "\`$lib' has not been installed in \`$libdir'"
clustalo-1.2.4/ltmain.sh-2189- finalize=no
##############################################
clustalo-1.2.4/ltmain.sh-2204- # Replace the output file specification.
clustalo-1.2.4/ltmain.sh:2205: relink_command=`$ECHO "X$relink_command" | $Xsed -e 's%@OUTPUT@%'"$outputname"'%g'`
clustalo-1.2.4/ltmain.sh-2206-
##############################################
clustalo-1.2.4/ltmain.sh-2223- # Install the binary that we compiled earlier.
clustalo-1.2.4/ltmain.sh:2224: file=`$ECHO "X$file$stripped_ext" | $Xsed -e "s%\([^/]*\)$%$objdir/\1%"`
clustalo-1.2.4/ltmain.sh-2225- fi
##############################################
clustalo-1.2.4/ltmain.sh-2294- my_pic_p="${3-no}"
clustalo-1.2.4/ltmain.sh:2295: my_prefix=`$ECHO "$my_originator" | sed 's%[^a-zA-Z0-9]%_%g'`
clustalo-1.2.4/ltmain.sh-2296- my_dlsyms=
##############################################
clustalo-1.2.4/ltmain.sh-2334- # Add our own program objects to the symbol list.
clustalo-1.2.4/ltmain.sh:2335: progfiles=`$ECHO "X$objs$old_deplibs" | $SP2NL | $Xsed -e "$lo2o" | $NL2SP`
clustalo-1.2.4/ltmain.sh-2336- for progfile in $progfiles; do
##############################################
clustalo-1.2.4/ltmain.sh-2517- if test -f "$output_objdir/$my_outputname.def"; then
clustalo-1.2.4/ltmain.sh:2518: compile_command=`$ECHO "X$compile_command" | $Xsed -e "s%@SYMFILE@%$output_objdir/$my_outputname.def $symfileobj%"`
clustalo-1.2.4/ltmain.sh:2519: finalize_command=`$ECHO "X$finalize_command" | $Xsed -e "s%@SYMFILE@%$output_objdir/$my_outputname.def $symfileobj%"`
clustalo-1.2.4/ltmain.sh-2520- else
clustalo-1.2.4/ltmain.sh:2521: compile_command=`$ECHO "X$compile_command" | $Xsed -e "s%@SYMFILE@%$symfileobj%"`
clustalo-1.2.4/ltmain.sh:2522: finalize_command=`$ECHO "X$finalize_command" | $Xsed -e "s%@SYMFILE@%$symfileobj%"`
clustalo-1.2.4/ltmain.sh-2523- fi
##############################################
clustalo-1.2.4/ltmain.sh-2525- *)
clustalo-1.2.4/ltmain.sh:2526: compile_command=`$ECHO "X$compile_command" | $Xsed -e "s%@SYMFILE@%$symfileobj%"`
clustalo-1.2.4/ltmain.sh:2527: finalize_command=`$ECHO "X$finalize_command" | $Xsed -e "s%@SYMFILE@%$symfileobj%"`
clustalo-1.2.4/ltmain.sh-2528- ;;
##############################################
clustalo-1.2.4/ltmain.sh-2540- # Nullify the symbol file.
clustalo-1.2.4/ltmain.sh:2541: compile_command=`$ECHO "X$compile_command" | $Xsed -e "s% @SYMFILE@%%"`
clustalo-1.2.4/ltmain.sh:2542: finalize_command=`$ECHO "X$finalize_command" | $Xsed -e "s% @SYMFILE@%%"`
clustalo-1.2.4/ltmain.sh-2543- fi
##############################################
clustalo-1.2.4/ltmain.sh-2555- win32_libid_type="unknown"
clustalo-1.2.4/ltmain.sh:2556: win32_fileres=`file -L $1 2>/dev/null`
clustalo-1.2.4/ltmain.sh-2557- case $win32_fileres in
##############################################
clustalo-1.2.4/ltmain.sh-2652- darwin_curdir=`pwd`
clustalo-1.2.4/ltmain.sh:2653: darwin_base_archive=`basename "$darwin_archive"`
clustalo-1.2.4/ltmain.sh:2654: darwin_arches=`$LIPO -info "$darwin_archive" 2>/dev/null | $GREP Architectures 2>/dev/null || true`
clustalo-1.2.4/ltmain.sh-2655- if test -n "$darwin_arches"; then
clustalo-1.2.4/ltmain.sh:2656: darwin_arches=`$ECHO "$darwin_arches" | $SED -e 's/.*are://'`
clustalo-1.2.4/ltmain.sh-2657- darwin_arch=
##############################################
clustalo-1.2.4/ltmain.sh-2667- ## Okay now we've a bunch of thin objects, gotta fatten them up :)
clustalo-1.2.4/ltmain.sh:2668: darwin_filelist=`find unfat-$$ -type f -name \*.o -print -o -name \*.lo -print | $SED -e "$basename" | sort -u`
clustalo-1.2.4/ltmain.sh-2669- darwin_file=
##############################################
clustalo-1.2.4/ltmain.sh-2671- for darwin_file in $darwin_filelist; do
clustalo-1.2.4/ltmain.sh:2672: darwin_files=`find unfat-$$ -name $darwin_file -print | $NL2SP`
clustalo-1.2.4/ltmain.sh-2673- $LIPO -create -output "$darwin_file" $darwin_files
##############################################
clustalo-1.2.4/ltmain.sh-2686- esac
clustalo-1.2.4/ltmain.sh:2687: my_oldobjs="$my_oldobjs "`find $my_xdir -name \*.$objext -print -o -name \*.lo -print | $NL2SP`
clustalo-1.2.4/ltmain.sh-2688- done
##############################################
clustalo-1.2.4/ltmain.sh-2757- shift
clustalo-1.2.4/ltmain.sh:2758: elif test \"X\`{ \$ECHO '\t'; } 2>/dev/null\`\" = 'X\t'; then
clustalo-1.2.4/ltmain.sh-2759- # Yippee, \$ECHO works!
##############################################
clustalo-1.2.4/ltmain.sh-2769- # Find the directory that this script lives in.
clustalo-1.2.4/ltmain.sh:2770: thisdir=\`\$ECHO \"X\$file\" | \$Xsed -e 's%/[^/]*$%%'\`
clustalo-1.2.4/ltmain.sh-2771- test \"x\$thisdir\" = \"x\$file\" && thisdir=.
##############################################
clustalo-1.2.4/ltmain.sh-2773- # Follow symbolic links until we get to the real thisdir.
clustalo-1.2.4/ltmain.sh:2774: file=\`ls -ld \"\$file\" | ${SED} -n 's/.*-> //p'\`
clustalo-1.2.4/ltmain.sh-2775- while test -n \"\$file\"; do
clustalo-1.2.4/ltmain.sh:2776: destdir=\`\$ECHO \"X\$file\" | \$Xsed -e 's%/[^/]*\$%%'\`
clustalo-1.2.4/ltmain.sh-2777-
##############################################
clustalo-1.2.4/ltmain.sh-2785-
clustalo-1.2.4/ltmain.sh:2786: file=\`\$ECHO \"X\$file\" | \$Xsed -e 's%^.*/%%'\`
clustalo-1.2.4/ltmain.sh:2787: file=\`ls -ld \"\$thisdir/\$file\" | ${SED} -n 's/.*-> //p'\`
clustalo-1.2.4/ltmain.sh-2788- done
##############################################
clustalo-1.2.4/ltmain.sh-2816- case \"\$thisdir\" in
clustalo-1.2.4/ltmain.sh:2817: *[\\\\/]$objdir ) thisdir=\`\$ECHO \"X\$thisdir\" | \$Xsed -e 's%[\\\\/][^\\\\/]*$%%'\` ;;
clustalo-1.2.4/ltmain.sh-2818- $objdir ) thisdir=. ;;
##############################################
clustalo-1.2.4/ltmain.sh-2822- # Try to get the absolute directory name.
clustalo-1.2.4/ltmain.sh:2823: absdir=\`cd \"\$thisdir\" && pwd\`
clustalo-1.2.4/ltmain.sh-2824- test -n \"\$absdir\" && thisdir=\"\$absdir\"
##############################################
clustalo-1.2.4/ltmain.sh-2832- if test ! -f \"\$progdir/\$program\" ||
clustalo-1.2.4/ltmain.sh:2833: { file=\`ls -1dt \"\$progdir/\$program\" \"\$progdir/../\$program\" 2>/dev/null | ${SED} 1q\`; \\
clustalo-1.2.4/ltmain.sh-2834- test \"X\$file\" != \"X\$progdir/\$program\"; }; then
##############################################
clustalo-1.2.4/ltmain.sh-2847- if test -n \"\$relink_command\"; then
clustalo-1.2.4/ltmain.sh:2848: if relink_command_output=\`eval \$relink_command 2>&1\`; then :
clustalo-1.2.4/ltmain.sh-2849- else
##############################################
clustalo-1.2.4/ltmain.sh-2879- # The second colon is a workaround for a bug in BeOS R4 sed
clustalo-1.2.4/ltmain.sh:2880: $shlibpath_var=\`\$ECHO \"X\$$shlibpath_var\" | \$Xsed -e 's/::*\$//'\`
clustalo-1.2.4/ltmain.sh-2881-
##############################################
clustalo-1.2.4/ltmain.sh-2994- *cygwin* )
clustalo-1.2.4/ltmain.sh:2995: func_to_host_path_tmp1=`cygpath -w "$1"`
clustalo-1.2.4/ltmain.sh-2996- func_to_host_path_result=`echo "$func_to_host_path_tmp1" |\
##############################################
clustalo-1.2.4/ltmain.sh-3006- # the odd construction:
clustalo-1.2.4/ltmain.sh:3007: func_to_host_path_tmp1=`winepath -w "$1" 2>/dev/null`
clustalo-1.2.4/ltmain.sh-3008- if test "$?" -eq 0 && test -n "${func_to_host_path_tmp1}"; then
##############################################
clustalo-1.2.4/ltmain.sh-3073- *cygwin* )
clustalo-1.2.4/ltmain.sh:3074: func_to_host_pathlist_tmp2=`cygpath -w -p "$func_to_host_pathlist_tmp1"`
clustalo-1.2.4/ltmain.sh-3075- func_to_host_pathlist_result=`echo "$func_to_host_pathlist_tmp2" |\
##############################################
clustalo-1.2.4/ltmain.sh-4240- moreargs=
clustalo-1.2.4/ltmain.sh:4241: for fil in `cat "$save_arg"`
clustalo-1.2.4/ltmain.sh-4242- do
##############################################
clustalo-1.2.4/ltmain.sh-4490- *)
clustalo-1.2.4/ltmain.sh:4491: absdir=`cd "$dir" && pwd`
clustalo-1.2.4/ltmain.sh-4492- test -z "$absdir" && \
##############################################
clustalo-1.2.4/ltmain.sh-4505- *-*-cygwin* | *-*-mingw* | *-*-pw32* | *-*-os2* | *-cegcc*)
clustalo-1.2.4/ltmain.sh:4506: testbindir=`$ECHO "X$dir" | $Xsed -e 's*/lib$*/bin*'`
clustalo-1.2.4/ltmain.sh-4507- case :$dllsearchpath: in
##############################################
clustalo-1.2.4/ltmain.sh-4927- # get the directories listed in $shlibpath_var
clustalo-1.2.4/ltmain.sh:4928: eval shlib_search_path=\`\$ECHO \"X\${$shlibpath_var}\" \| \$Xsed -e \'s/:/ /g\'\`
clustalo-1.2.4/ltmain.sh-4929- else
##############################################
clustalo-1.2.4/ltmain.sh-5053- for deplib in $dependency_libs; do
clustalo-1.2.4/ltmain.sh:5054: deplib_base=`$ECHO "X$deplib" | $Xsed -e "$basename"`
clustalo-1.2.4/ltmain.sh-5055- case " $weak_libs " in
##############################################
clustalo-1.2.4/ltmain.sh-5231- set dummy $deplibs_check_method; shift
clustalo-1.2.4/ltmain.sh:5232: match_pattern_regex=`expr "$deplibs_check_method" : "$1 \(.*\)"`
clustalo-1.2.4/ltmain.sh-5233- if eval "\$ECHO \"X$deplib\"" 2>/dev/null | $Xsed -e 10q \
##############################################
clustalo-1.2.4/ltmain.sh-5294- else
clustalo-1.2.4/ltmain.sh:5295: func_fatal_error "cannot find the library \`$lib' or unhandled argument \`$deplib'"
clustalo-1.2.4/ltmain.sh-5296- fi
##############################################
clustalo-1.2.4/ltmain.sh-5323- if test -n "$inherited_linker_flags"; then
clustalo-1.2.4/ltmain.sh:5324: tmp_inherited_linker_flags=`$ECHO "X$inherited_linker_flags" | $Xsed -e 's/-framework \([^ $]*\)/\1.ltframework/g'`
clustalo-1.2.4/ltmain.sh-5325- for tmp_inherited_linker_flag in $tmp_inherited_linker_flags; do
##############################################
clustalo-1.2.4/ltmain.sh-5331- fi
clustalo-1.2.4/ltmain.sh:5332: dependency_libs=`$ECHO "X $dependency_libs" | $Xsed -e 's% \([^ $]*\).ltframework% -framework \1%g'`
clustalo-1.2.4/ltmain.sh-5333- if test "$linkmode,$pass" = "lib,link" ||
##############################################
clustalo-1.2.4/ltmain.sh-5398- *)
clustalo-1.2.4/ltmain.sh:5399: abs_ladir=`cd "$ladir" && pwd`
clustalo-1.2.4/ltmain.sh-5400- if test -z "$abs_ladir"; then
##############################################
clustalo-1.2.4/ltmain.sh-5624- shift
clustalo-1.2.4/ltmain.sh:5625: libname=`eval "\\$ECHO \"$libname_spec\""`
clustalo-1.2.4/ltmain.sh-5626- # use dlname if we got it. it's perfectly good, no?
##############################################
clustalo-1.2.4/ltmain.sh-5907- *)
clustalo-1.2.4/ltmain.sh:5908: absdir=`cd "$dir" && pwd`
clustalo-1.2.4/ltmain.sh-5909- if test -z "$absdir"; then
##############################################
clustalo-1.2.4/ltmain.sh-5918- depdepl=
clustalo-1.2.4/ltmain.sh:5919: eval deplibrary_names=`${SED} -n -e 's/^library_names=\(.*\)$/\1/p' $deplib`
clustalo-1.2.4/ltmain.sh-5920- if test -n "$deplibrary_names" ; then
##############################################
clustalo-1.2.4/ltmain.sh-5925- depdepl="$absdir/$objdir/$depdepl"
clustalo-1.2.4/ltmain.sh:5926: darwin_install_name=`${OTOOL} -L $depdepl | awk '{if (NR == 2) {print $1;exit}}'`
clustalo-1.2.4/ltmain.sh-5927- if test -z "$darwin_install_name"; then
clustalo-1.2.4/ltmain.sh:5928: darwin_install_name=`${OTOOL64} -L $depdepl | awk '{if (NR == 2) {print $1;exit}}'`
clustalo-1.2.4/ltmain.sh-5929- fi
##############################################
clustalo-1.2.4/ltmain.sh-5940- else
clustalo-1.2.4/ltmain.sh:5941: eval libdir=`${SED} -n -e 's/^libdir=\(.*\)$/\1/p' $deplib`
clustalo-1.2.4/ltmain.sh-5942- test -z "$libdir" && \
##############################################
clustalo-1.2.4/ltmain.sh-5963- else
clustalo-1.2.4/ltmain.sh:5964: compiler_flags="$compiler_flags "`$ECHO "X $new_inherited_linker_flags" | $Xsed -e 's% \([^ $]*\).ltframework% -framework \1%g'`
clustalo-1.2.4/ltmain.sh-5965- fi
##############################################
clustalo-1.2.4/ltmain.sh-6112- test "$module" = no && \
clustalo-1.2.4/ltmain.sh:6113: func_fatal_help "libtool library \`$output' must begin with \`lib'"
clustalo-1.2.4/ltmain.sh-6114-
##############################################
clustalo-1.2.4/ltmain.sh-6249- if test "$age" -gt "$current"; then
clustalo-1.2.4/ltmain.sh:6250: func_error "AGE \`$age' is greater than the current interface number \`$current'"
clustalo-1.2.4/ltmain.sh-6251- func_fatal_error "\`$vinfo' is not valid version information"
##############################################
clustalo-1.2.4/ltmain.sh-6410- removelist=
clustalo-1.2.4/ltmain.sh:6411: tempremovelist=`$ECHO "$output_objdir/*"`
clustalo-1.2.4/ltmain.sh-6412- for p in $tempremovelist; do
##############################################
clustalo-1.2.4/ltmain.sh-6436- # Transform .lo files to .o files.
clustalo-1.2.4/ltmain.sh:6437: oldobjs="$objs "`$ECHO "X$libobjs" | $SP2NL | $Xsed -e '/\.'${libext}'$/d' -e "$lo2o" | $NL2SP`
clustalo-1.2.4/ltmain.sh-6438- fi
##############################################
clustalo-1.2.4/ltmain.sh-6441- #for path in $notinst_path; do
clustalo-1.2.4/ltmain.sh:6442: # lib_search_path=`$ECHO "X$lib_search_path " | $Xsed -e "s% $path % %g"`
clustalo-1.2.4/ltmain.sh:6443: # deplibs=`$ECHO "X$deplibs " | $Xsed -e "s% -L$path % %g"`
clustalo-1.2.4/ltmain.sh:6444: # dependency_libs=`$ECHO "X$dependency_libs " | $Xsed -e "s% -L$path % %g"`
clustalo-1.2.4/ltmain.sh-6445- #done
##############################################
clustalo-1.2.4/ltmain.sh-6561- if test -n "$i" ; then
clustalo-1.2.4/ltmain.sh:6562: libname=`eval "\\$ECHO \"$libname_spec\""`
clustalo-1.2.4/ltmain.sh:6563: deplib_matches=`eval "\\$ECHO \"$library_names_spec\""`
clustalo-1.2.4/ltmain.sh-6564- set dummy $deplib_matches; shift
clustalo-1.2.4/ltmain.sh-6565- deplib_match=$1
clustalo-1.2.4/ltmain.sh:6566: if test `expr "$ldd_output" : ".*$deplib_match"` -ne 0 ; then
clustalo-1.2.4/ltmain.sh-6567- newdeplibs="$newdeplibs $i"
##############################################
clustalo-1.2.4/ltmain.sh-6604- if test -n "$i" ; then
clustalo-1.2.4/ltmain.sh:6605: libname=`eval "\\$ECHO \"$libname_spec\""`
clustalo-1.2.4/ltmain.sh:6606: deplib_matches=`eval "\\$ECHO \"$library_names_spec\""`
clustalo-1.2.4/ltmain.sh-6607- set dummy $deplib_matches; shift
clustalo-1.2.4/ltmain.sh-6608- deplib_match=$1
clustalo-1.2.4/ltmain.sh:6609: if test `expr "$ldd_output" : ".*$deplib_match"` -ne 0 ; then
clustalo-1.2.4/ltmain.sh-6610- newdeplibs="$newdeplibs $i"
##############################################
clustalo-1.2.4/ltmain.sh-6639- set dummy $deplibs_check_method; shift
clustalo-1.2.4/ltmain.sh:6640: file_magic_regex=`expr "$deplibs_check_method" : "$1 \(.*\)"`
clustalo-1.2.4/ltmain.sh-6641- for a_deplib in $deplibs; do
##############################################
clustalo-1.2.4/ltmain.sh-6654- if test -n "$a_deplib" ; then
clustalo-1.2.4/ltmain.sh:6655: libname=`eval "\\$ECHO \"$libname_spec\""`
clustalo-1.2.4/ltmain.sh-6656- for i in $lib_search_path $sys_lib_search_path $shlib_search_path; do
clustalo-1.2.4/ltmain.sh:6657: potential_libs=`ls $i/$libname[.-]* 2>/dev/null`
clustalo-1.2.4/ltmain.sh-6658- for potent_lib in $potential_libs; do
##############################################
clustalo-1.2.4/ltmain.sh-6670- while test -h "$potlib" 2>/dev/null; do
clustalo-1.2.4/ltmain.sh:6671: potliblink=`ls -ld $potlib | ${SED} 's/.* -> //'`
clustalo-1.2.4/ltmain.sh-6672- case $potliblink in
clustalo-1.2.4/ltmain.sh-6673- [\\/]* | [A-Za-z]:[\\/]*) potlib="$potliblink";;
clustalo-1.2.4/ltmain.sh:6674: *) potlib=`$ECHO "X$potlib" | $Xsed -e 's,[^/]*$,,'`"$potliblink";;
clustalo-1.2.4/ltmain.sh-6675- esac
##############################################
clustalo-1.2.4/ltmain.sh-6711- set dummy $deplibs_check_method; shift
clustalo-1.2.4/ltmain.sh:6712: match_pattern_regex=`expr "$deplibs_check_method" : "$1 \(.*\)"`
clustalo-1.2.4/ltmain.sh-6713- for a_deplib in $deplibs; do
##############################################
clustalo-1.2.4/ltmain.sh-6726- if test -n "$a_deplib" ; then
clustalo-1.2.4/ltmain.sh:6727: libname=`eval "\\$ECHO \"$libname_spec\""`
clustalo-1.2.4/ltmain.sh-6728- for i in $lib_search_path $sys_lib_search_path $shlib_search_path; do
clustalo-1.2.4/ltmain.sh:6729: potential_libs=`ls $i/$libname[.-]* 2>/dev/null`
clustalo-1.2.4/ltmain.sh-6730- for potent_lib in $potential_libs; do
##############################################
clustalo-1.2.4/ltmain.sh-6770- # can't use Xsed below, because $i might contain '/'
clustalo-1.2.4/ltmain.sh:6771: tmp_deplibs=`$ECHO "X $tmp_deplibs" | $Xsed -e "s,$i,,"`
clustalo-1.2.4/ltmain.sh-6772- done
##############################################
clustalo-1.2.4/ltmain.sh-6795- # On Rhapsody replace the C library with the System framework
clustalo-1.2.4/ltmain.sh:6796: newdeplibs=`$ECHO "X $newdeplibs" | $Xsed -e 's/ -lc / System.ltframework /'`
clustalo-1.2.4/ltmain.sh-6797- ;;
##############################################
clustalo-1.2.4/ltmain.sh-6847- *-*-darwin*)
clustalo-1.2.4/ltmain.sh:6848: newdeplibs=`$ECHO "X $newdeplibs" | $Xsed -e 's% \([^ $]*\).ltframework% -framework \1%g'`
clustalo-1.2.4/ltmain.sh:6849: new_inherited_linker_flags=`$ECHO "X $new_inherited_linker_flags" | $Xsed -e 's% \([^ $]*\).ltframework% -framework \1%g'`
clustalo-1.2.4/ltmain.sh:6850: deplibs=`$ECHO "X $deplibs" | $Xsed -e 's% \([^ $]*\).ltframework% -framework \1%g'`
clustalo-1.2.4/ltmain.sh-6851- ;;
##############################################
clustalo-1.2.4/ltmain.sh-6971- # Use standard objects if they are pic
clustalo-1.2.4/ltmain.sh:6972: test -z "$pic_flag" && libobjs=`$ECHO "X$libobjs" | $SP2NL | $Xsed -e "$lo2o" | $NL2SP`
clustalo-1.2.4/ltmain.sh-6973- test "X$libobjs" = "X " && libobjs=
##############################################
clustalo-1.2.4/ltmain.sh-6986- # exporting using user supplied symfile
clustalo-1.2.4/ltmain.sh:6987: if test "x`$SED 1q $export_symbols`" != xEXPORTS; then
clustalo-1.2.4/ltmain.sh-6988- # and it's NOT already a .def file. Must figure out
##############################################
clustalo-1.2.4/ltmain.sh-7138- save_output=$output
clustalo-1.2.4/ltmain.sh:7139: output_la=`$ECHO "X$output" | $Xsed -e "$basename"`
clustalo-1.2.4/ltmain.sh-7140-
##############################################
clustalo-1.2.4/ltmain.sh-7442- eval tmp_whole_archive_flags=\"$whole_archive_flag_spec\"
clustalo-1.2.4/ltmain.sh:7443: reload_conv_objs=$reload_objs\ `$ECHO "X$tmp_whole_archive_flags" | $Xsed -e 's|,| |g'`
clustalo-1.2.4/ltmain.sh-7444- else
##############################################
clustalo-1.2.4/ltmain.sh-7453- # Create the old-style object.
clustalo-1.2.4/ltmain.sh:7454: reload_objs="$objs$old_deplibs "`$ECHO "X$libobjs" | $SP2NL | $Xsed -e '/\.'${libext}$'/d' -e '/\.lib$/d' -e "$lo2o" | $NL2SP`" $reload_conv_objs" ### testsuite: skip nested quoting test
clustalo-1.2.4/ltmain.sh-7455-
##############################################
clustalo-1.2.4/ltmain.sh-7513- # On Rhapsody replace the C library is the System framework
clustalo-1.2.4/ltmain.sh:7514: compile_deplibs=`$ECHO "X $compile_deplibs" | $Xsed -e 's/ -lc / System.ltframework /'`
clustalo-1.2.4/ltmain.sh:7515: finalize_deplibs=`$ECHO "X $finalize_deplibs" | $Xsed -e 's/ -lc / System.ltframework /'`
clustalo-1.2.4/ltmain.sh-7516- ;;
##############################################
clustalo-1.2.4/ltmain.sh-7531- # Time to change all our "foo.ltframework" stuff back to "-framework foo"
clustalo-1.2.4/ltmain.sh:7532: compile_deplibs=`$ECHO "X $compile_deplibs" | $Xsed -e 's% \([^ $]*\).ltframework% -framework \1%g'`
clustalo-1.2.4/ltmain.sh:7533: finalize_deplibs=`$ECHO "X $finalize_deplibs" | $Xsed -e 's% \([^ $]*\).ltframework% -framework \1%g'`
clustalo-1.2.4/ltmain.sh-7534- ;;
##############################################
clustalo-1.2.4/ltmain.sh-7609- *-*-cygwin* | *-*-mingw* | *-*-pw32* | *-*-os2* | *-cegcc*)
clustalo-1.2.4/ltmain.sh:7610: testbindir=`${ECHO} "$libdir" | ${SED} -e 's*/lib$*/bin*'`
clustalo-1.2.4/ltmain.sh-7611- case :$dllsearchpath: in
##############################################
clustalo-1.2.4/ltmain.sh-7669- # Transform all the library objects into standard objects.
clustalo-1.2.4/ltmain.sh:7670: compile_command=`$ECHO "X$compile_command" | $SP2NL | $Xsed -e "$lo2o" | $NL2SP`
clustalo-1.2.4/ltmain.sh:7671: finalize_command=`$ECHO "X$finalize_command" | $SP2NL | $Xsed -e "$lo2o" | $NL2SP`
clustalo-1.2.4/ltmain.sh-7672- fi
##############################################
clustalo-1.2.4/ltmain.sh-7699- # Replace the output file specification.
clustalo-1.2.4/ltmain.sh:7700: compile_command=`$ECHO "X$compile_command" | $Xsed -e 's%@OUTPUT@%'"$output"'%g'`
clustalo-1.2.4/ltmain.sh-7701- link_command="$compile_command$compile_rpath"
##############################################
clustalo-1.2.4/ltmain.sh-7746- # Replace the output file specification.
clustalo-1.2.4/ltmain.sh:7747: link_command=`$ECHO "X$link_command" | $Xsed -e 's%@OUTPUT@%'"$output"'%g'`
clustalo-1.2.4/ltmain.sh-7748- # Delete the old output file.
##############################################
clustalo-1.2.4/ltmain.sh-7765- if test "$fast_install" = yes; then
clustalo-1.2.4/ltmain.sh:7766: relink_command=`$ECHO "X$compile_var$compile_command$compile_rpath" | $Xsed -e 's%@OUTPUT@%\$progdir/\$file%g'`
clustalo-1.2.4/ltmain.sh-7767- else
##############################################
clustalo-1.2.4/ltmain.sh-7777- # Replace the output file specification.
clustalo-1.2.4/ltmain.sh:7778: link_command=`$ECHO "X$link_command" | $Xsed -e 's%@OUTPUT@%'"$output_objdir/$outputname"'%g'`
clustalo-1.2.4/ltmain.sh-7779-
##############################################
clustalo-1.2.4/ltmain.sh-7801- relink_command="(cd `pwd`; $relink_command)"
clustalo-1.2.4/ltmain.sh:7802: relink_command=`$ECHO "X$relink_command" | $Xsed -e "$sed_quote_subst"`
clustalo-1.2.4/ltmain.sh-7803- fi
##############################################
clustalo-1.2.4/ltmain.sh-7810- esac
clustalo-1.2.4/ltmain.sh:7811: qecho=`$ECHO "X$qecho" | $Xsed -e "$sed_quote_subst"`
clustalo-1.2.4/ltmain.sh-7812- else
clustalo-1.2.4/ltmain.sh:7813: qecho=`$ECHO "X$ECHO" | $Xsed -e "$sed_quote_subst"`
clustalo-1.2.4/ltmain.sh-7814- fi
##############################################
clustalo-1.2.4/ltmain.sh-8044- relink_command="(cd `pwd`; $SHELL $progpath $preserve_args --mode=relink $libtool_args @inst_prefix_dir@)"
clustalo-1.2.4/ltmain.sh:8045: relink_command=`$ECHO "X$relink_command" | $Xsed -e "$sed_quote_subst"`
clustalo-1.2.4/ltmain.sh-8046- if test "$hardcode_automatic" = yes ; then
##############################################
clustalo-1.2.4/ltmain.sh-8064- name="$func_basename_result"
clustalo-1.2.4/ltmain.sh:8065: eval libdir=`${SED} -n -e 's/^libdir=\(.*\)$/\1/p' $deplib`
clustalo-1.2.4/ltmain.sh-8066- test -z "$libdir" && \
##############################################
clustalo-1.2.4/ltmain.sh-8080- name="$func_basename_result"
clustalo-1.2.4/ltmain.sh:8081: eval libdir=`${SED} -n -e 's/^libdir=\(.*\)$/\1/p' $lib`
clustalo-1.2.4/ltmain.sh-8082- test -z "$libdir" && \
##############################################
clustalo-1.2.4/ltmain.sh-8099- name="$func_basename_result"
clustalo-1.2.4/ltmain.sh:8100: eval libdir=`${SED} -n -e 's/^libdir=\(.*\)$/\1/p' $lib`
clustalo-1.2.4/ltmain.sh-8101- test -z "$libdir" && \
##############################################
clustalo-1.2.4/ltmain.sh-8403-# ### BEGIN LIBTOOL TAG CONFIG: disable-static
clustalo-1.2.4/ltmain.sh:8404:build_old_libs=`case $build_libtool_libs in yes) echo no;; *) echo yes;; esac`
clustalo-1.2.4/ltmain.sh-8405-# ### END LIBTOOL TAG CONFIG: disable-static
##############################################
clustalo-1.2.4/install-sh-234- fi
clustalo-1.2.4/install-sh:235: cp_umask=`expr '(' 777 - $mode % 1000 ')' $u_plus_rw`;;
clustalo-1.2.4/install-sh-236- *)
##############################################
clustalo-1.2.4/install-sh-281- dstdir=$dst
clustalo-1.2.4/install-sh:282: dst=$dstdir/`basename "$src"`
clustalo-1.2.4/install-sh-283- dstdir_status=0
clustalo-1.2.4/install-sh-284- else
clustalo-1.2.4/install-sh:285: dstdir=`dirname "$dst"`
clustalo-1.2.4/install-sh-286- test -d "$dstdir"
##############################################
clustalo-1.2.4/install-sh-344- test_tmpdir="$tmpdir/a"
clustalo-1.2.4/install-sh:345: ls_ld_tmpdir=`ls -ld "$test_tmpdir"`
clustalo-1.2.4/install-sh-346- case $ls_ld_tmpdir in
##############################################
clustalo-1.2.4/install-sh-351- $mkdirprog -m$different_mode -p -- "$test_tmpdir" && {
clustalo-1.2.4/install-sh:352: ls_ld_tmpdir_1=`ls -ld "$test_tmpdir"`
clustalo-1.2.4/install-sh-353- test "$ls_ld_tmpdir" = "$ls_ld_tmpdir_1"
##############################################
clustalo-1.2.4/install-sh-409- case $prefix in
clustalo-1.2.4/install-sh:410: *\'*) qprefix=`echo "$prefix" | sed "s/'/'\\\\\\\\''/g"`;;
clustalo-1.2.4/install-sh-411- *) qprefix=$prefix;;
##############################################
clustalo-1.2.4/install-sh-458- if $copy_on_change &&
clustalo-1.2.4/install-sh:459: old=`LC_ALL=C ls -dlL "$dst" 2>/dev/null` &&
clustalo-1.2.4/install-sh:460: new=`LC_ALL=C ls -dlL "$dsttmp" 2>/dev/null` &&
clustalo-1.2.4/install-sh-461- set -f &&
##############################################
clustalo-1.2.4/aclocal.m4-67-# $ac_aux_dir to `$srcdir/foo'. In other projects, it is set to
clustalo-1.2.4/aclocal.m4:68:# `$srcdir', `$srcdir/..', or `$srcdir/../..'.
clustalo-1.2.4/aclocal.m4-69-#
##############################################
clustalo-1.2.4/aclocal.m4-91-# iff we strip the leading $srcdir from $ac_aux_dir. That would be:
clustalo-1.2.4/aclocal.m4:92:# am_aux_dir='\$(top_srcdir)/'`expr "$ac_aux_dir" : "$srcdir//*\(.*\)"`
clustalo-1.2.4/aclocal.m4-93-# and then we would define $MISSING as
##############################################
clustalo-1.2.4/aclocal.m4-107-# expand $ac_aux_dir to an absolute path
clustalo-1.2.4/aclocal.m4:108:am_aux_dir=`cd $ac_aux_dir && pwd`
clustalo-1.2.4/aclocal.m4-109-])
##############################################
clustalo-1.2.4/aclocal.m4-207- if test "$am_compiler_list" = ""; then
clustalo-1.2.4/aclocal.m4:208: am_compiler_list=`sed -n ['s/^#*\([a-zA-Z0-9]*\))$/\1/p'] < ./depcomp`
clustalo-1.2.4/aclocal.m4-209- fi
##############################################
clustalo-1.2.4/aclocal.m4-329- # Strip MF so we end up with the name of the file.
clustalo-1.2.4/aclocal.m4:330: mf=`echo "$mf" | sed -e 's/:.*$//'`
clustalo-1.2.4/aclocal.m4-331- # Check whether this is an Automake generated Makefile or not.
##############################################
clustalo-1.2.4/aclocal.m4-338- if sed -n 's,^#.*generated by automake.*,X,p' "$mf" | grep X >/dev/null 2>&1; then
clustalo-1.2.4/aclocal.m4:339: dirpart=`AS_DIRNAME("$mf")`
clustalo-1.2.4/aclocal.m4-340- else
##############################################
clustalo-1.2.4/aclocal.m4-344- # from the Makefile without running `make'.
clustalo-1.2.4/aclocal.m4:345: DEPDIR=`sed -n 's/^DEPDIR = //p' < "$mf"`
clustalo-1.2.4/aclocal.m4-346- test -z "$DEPDIR" && continue
clustalo-1.2.4/aclocal.m4:347: am__include=`sed -n 's/^am__include = //p' < "$mf"`
clustalo-1.2.4/aclocal.m4-348- test -z "am__include" && continue
clustalo-1.2.4/aclocal.m4:349: am__quote=`sed -n 's/^am__quote = //p' < "$mf"`
clustalo-1.2.4/aclocal.m4-350- # When using ansi2knr, U may be empty or an underscore; expand it
clustalo-1.2.4/aclocal.m4:351: U=`sed -n 's/^U = //p' < "$mf"`
clustalo-1.2.4/aclocal.m4-352- # Find all dependency output files, they are included files with
##############################################
clustalo-1.2.4/aclocal.m4-360- test -f "$dirpart/$file" && continue
clustalo-1.2.4/aclocal.m4:361: fdir=`AS_DIRNAME(["$file"])`
clustalo-1.2.4/aclocal.m4-362- AS_MKDIR_P([$dirpart/$fdir])
##############################################
clustalo-1.2.4/aclocal.m4-443-AC_REQUIRE([AC_PROG_INSTALL])dnl
clustalo-1.2.4/aclocal.m4:444:if test "`cd $srcdir && pwd`" != "`pwd`"; then
clustalo-1.2.4/aclocal.m4-445- # Use -I$(srcdir) only when $(srcdir) != ., so that make's output
##############################################
clustalo-1.2.4/aclocal.m4-532- * )
clustalo-1.2.4/aclocal.m4:533: _am_stamp_count=`expr $_am_stamp_count + 1` ;;
clustalo-1.2.4/aclocal.m4-534- esac
clustalo-1.2.4/aclocal.m4-535-done
clustalo-1.2.4/aclocal.m4:536:echo "timestamp for $_am_arg" >`AS_DIRNAME(["$_am_arg"])`/stamp-h[]$_am_stamp_count])
clustalo-1.2.4/aclocal.m4-537-
##############################################
clustalo-1.2.4/aclocal.m4-604-# case it prints its new name instead of `make'.
clustalo-1.2.4/aclocal.m4:605:if test "`$am_make -s -f confmf 2> /dev/null | grep -v 'ing directory'`" = "done"; then
clustalo-1.2.4/aclocal.m4-606- am__include=include
##############################################
clustalo-1.2.4/aclocal.m4-612- echo '.include "confinc"' > confmf
clustalo-1.2.4/aclocal.m4:613: if test "`$am_make -s -f confmf 2> /dev/null`" = "done"; then
clustalo-1.2.4/aclocal.m4-614- am__include=.include
##############################################
clustalo-1.2.4/aclocal.m4-743-if (
clustalo-1.2.4/aclocal.m4:744: set X `ls -Lt $srcdir/configure conftest.file 2> /dev/null`
clustalo-1.2.4/aclocal.m4-745- if test "$[*]" = "X"; then
clustalo-1.2.4/aclocal.m4-746- # -L didn't work.
clustalo-1.2.4/aclocal.m4:747: set X `ls -t $srcdir/configure conftest.file`
clustalo-1.2.4/aclocal.m4-748- fi
##############################################
clustalo-1.2.4/config.sub-56-
clustalo-1.2.4/config.sub:57:me=`echo "$0" | sed -e 's,.*/,,'`
clustalo-1.2.4/config.sub-58-
##############################################
clustalo-1.2.4/config.sub-120-# Here we must recognize all the valid KERNEL-OS combinations.
clustalo-1.2.4/config.sub:121:maybe_os=`echo $1 | sed 's/^\(.*\)-\([^-]*-[^-]*\)$/\2/'`
clustalo-1.2.4/config.sub-122-case $maybe_os in
##############################################
clustalo-1.2.4/config.sub-126- os=-$maybe_os
clustalo-1.2.4/config.sub:127: basic_machine=`echo $1 | sed 's/^\(.*\)-\([^-]*-[^-]*\)$/\1/'`
clustalo-1.2.4/config.sub-128- ;;
clustalo-1.2.4/config.sub-129- *)
clustalo-1.2.4/config.sub:130: basic_machine=`echo $1 | sed 's/-[^-]*$//'`
clustalo-1.2.4/config.sub-131- if [ $basic_machine != $1 ]
clustalo-1.2.4/config.sub:132: then os=`echo $1 | sed 's/.*-/-/'`
clustalo-1.2.4/config.sub-133- else os=; fi
##############################################
clustalo-1.2.4/config.sub-177- os=-sco5v6
clustalo-1.2.4/config.sub:178: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
clustalo-1.2.4/config.sub-179- ;;
##############################################
clustalo-1.2.4/config.sub-181- os=-sco3.2v5
clustalo-1.2.4/config.sub:182: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
clustalo-1.2.4/config.sub-183- ;;
##############################################
clustalo-1.2.4/config.sub-185- os=-sco3.2v4
clustalo-1.2.4/config.sub:186: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
clustalo-1.2.4/config.sub-187- ;;
clustalo-1.2.4/config.sub-188- -sco3.2.[4-9]*)
clustalo-1.2.4/config.sub:189: os=`echo $os | sed -e 's/sco3.2./sco3.2v/'`
clustalo-1.2.4/config.sub:190: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
clustalo-1.2.4/config.sub-191- ;;
##############################################
clustalo-1.2.4/config.sub-193- # Don't forget version if it is 3.2v4 or newer.
clustalo-1.2.4/config.sub:194: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
clustalo-1.2.4/config.sub-195- ;;
##############################################
clustalo-1.2.4/config.sub-197- # Don't forget version if it is 3.2v4 or newer.
clustalo-1.2.4/config.sub:198: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
clustalo-1.2.4/config.sub-199- ;;
##############################################
clustalo-1.2.4/config.sub-201- os=-sco3.2v2
clustalo-1.2.4/config.sub:202: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
clustalo-1.2.4/config.sub-203- ;;
clustalo-1.2.4/config.sub-204- -udk*)
clustalo-1.2.4/config.sub:205: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
clustalo-1.2.4/config.sub-206- ;;
##############################################
clustalo-1.2.4/config.sub-208- os=-isc2.2
clustalo-1.2.4/config.sub:209: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
clustalo-1.2.4/config.sub-210- ;;
##############################################
clustalo-1.2.4/config.sub-214- -isc*)
clustalo-1.2.4/config.sub:215: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
clustalo-1.2.4/config.sub-216- ;;
##############################################
clustalo-1.2.4/config.sub-220- -ptx*)
clustalo-1.2.4/config.sub:221: basic_machine=`echo $1 | sed -e 's/86-.*/86-sequent/'`
clustalo-1.2.4/config.sub-222- ;;
clustalo-1.2.4/config.sub-223- -windowsnt*)
clustalo-1.2.4/config.sub:224: os=`echo $os | sed -e 's/windowsnt/winnt/'`
clustalo-1.2.4/config.sub-225- ;;
##############################################
clustalo-1.2.4/config.sub-310- *-*-*)
clustalo-1.2.4/config.sub:311: echo Invalid configuration \`$1\': machine \`$basic_machine\' not recognized 1>&2
clustalo-1.2.4/config.sub-312- exit 1
##############################################
clustalo-1.2.4/config.sub-416- amd64-*)
clustalo-1.2.4/config.sub:417: basic_machine=x86_64-`echo $basic_machine | sed 's/^[^-]*-//'`
clustalo-1.2.4/config.sub-418- ;;
##############################################
clustalo-1.2.4/config.sub-454- blackfin-*)
clustalo-1.2.4/config.sub:455: basic_machine=bfin-`echo $basic_machine | sed 's/^[^-]*-//'`
clustalo-1.2.4/config.sub-456- os=-linux
##############################################
clustalo-1.2.4/config.sub-645- i*86v32)
clustalo-1.2.4/config.sub:646: basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
clustalo-1.2.4/config.sub-647- os=-sysv32
##############################################
clustalo-1.2.4/config.sub-649- i*86v4*)
clustalo-1.2.4/config.sub:650: basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
clustalo-1.2.4/config.sub-651- os=-sysv4
##############################################
clustalo-1.2.4/config.sub-653- i*86v)
clustalo-1.2.4/config.sub:654: basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
clustalo-1.2.4/config.sub-655- os=-sysv
##############################################
clustalo-1.2.4/config.sub-657- i*86sol2)
clustalo-1.2.4/config.sub:658: basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
clustalo-1.2.4/config.sub-659- os=-solaris2
##############################################
clustalo-1.2.4/config.sub-687- m68knommu-*)
clustalo-1.2.4/config.sub:688: basic_machine=m68k-`echo $basic_machine | sed 's/^[^-]*-//'`
clustalo-1.2.4/config.sub-689- os=-linux
##############################################
clustalo-1.2.4/config.sub-717- mips3*-*)
clustalo-1.2.4/config.sub:718: basic_machine=`echo $basic_machine | sed -e 's/mips3/mips64/'`
clustalo-1.2.4/config.sub-719- ;;
clustalo-1.2.4/config.sub-720- mips3*)
clustalo-1.2.4/config.sub:721: basic_machine=`echo $basic_machine | sed -e 's/mips3/mips64/'`-unknown
clustalo-1.2.4/config.sub-722- ;;
##############################################
clustalo-1.2.4/config.sub-735- ms1-*)
clustalo-1.2.4/config.sub:736: basic_machine=`echo $basic_machine | sed -e 's/ms1-/mt-/'`
clustalo-1.2.4/config.sub-737- ;;
##############################################
clustalo-1.2.4/config.sub-840- parisc-*)
clustalo-1.2.4/config.sub:841: basic_machine=hppa-`echo $basic_machine | sed 's/^[^-]*-//'`
clustalo-1.2.4/config.sub-842- os=-linux
##############################################
clustalo-1.2.4/config.sub-856- pc98-*)
clustalo-1.2.4/config.sub:857: basic_machine=i386-`echo $basic_machine | sed 's/^[^-]*-//'`
clustalo-1.2.4/config.sub-858- ;;
##############################################
clustalo-1.2.4/config.sub-871- pentium-* | p5-* | k5-* | k6-* | nexgen-* | viac3-*)
clustalo-1.2.4/config.sub:872: basic_machine=i586-`echo $basic_machine | sed 's/^[^-]*-//'`
clustalo-1.2.4/config.sub-873- ;;
clustalo-1.2.4/config.sub-874- pentiumpro-* | p6-* | 6x86-* | athlon-*)
clustalo-1.2.4/config.sub:875: basic_machine=i686-`echo $basic_machine | sed 's/^[^-]*-//'`
clustalo-1.2.4/config.sub-876- ;;
clustalo-1.2.4/config.sub-877- pentiumii-* | pentium2-* | pentiumiii-* | pentium3-*)
clustalo-1.2.4/config.sub:878: basic_machine=i686-`echo $basic_machine | sed 's/^[^-]*-//'`
clustalo-1.2.4/config.sub-879- ;;
clustalo-1.2.4/config.sub-880- pentium4-*)
clustalo-1.2.4/config.sub:881: basic_machine=i786-`echo $basic_machine | sed 's/^[^-]*-//'`
clustalo-1.2.4/config.sub-882- ;;
##############################################
clustalo-1.2.4/config.sub-889- ;;
clustalo-1.2.4/config.sub:890: ppc-*) basic_machine=powerpc-`echo $basic_machine | sed 's/^[^-]*-//'`
clustalo-1.2.4/config.sub-891- ;;
##############################################
clustalo-1.2.4/config.sub-895- ppcle-* | powerpclittle-*)
clustalo-1.2.4/config.sub:896: basic_machine=powerpcle-`echo $basic_machine | sed 's/^[^-]*-//'`
clustalo-1.2.4/config.sub-897- ;;
##############################################
clustalo-1.2.4/config.sub-899- ;;
clustalo-1.2.4/config.sub:900: ppc64-*) basic_machine=powerpc64-`echo $basic_machine | sed 's/^[^-]*-//'`
clustalo-1.2.4/config.sub-901- ;;
##############################################
clustalo-1.2.4/config.sub-905- ppc64le-* | powerpc64little-*)
clustalo-1.2.4/config.sub:906: basic_machine=powerpc64le-`echo $basic_machine | sed 's/^[^-]*-//'`
clustalo-1.2.4/config.sub-907- ;;
##############################################
clustalo-1.2.4/config.sub-1193- *)
clustalo-1.2.4/config.sub:1194: echo Invalid configuration \`$1\': machine \`$basic_machine\' not recognized 1>&2
clustalo-1.2.4/config.sub-1195- exit 1
##############################################
clustalo-1.2.4/config.sub-1201- *-digital*)
clustalo-1.2.4/config.sub:1202: basic_machine=`echo $basic_machine | sed 's/digital.*/dec/'`
clustalo-1.2.4/config.sub-1203- ;;
clustalo-1.2.4/config.sub-1204- *-commodore*)
clustalo-1.2.4/config.sub:1205: basic_machine=`echo $basic_machine | sed 's/commodore.*/cbm/'`
clustalo-1.2.4/config.sub-1206- ;;
##############################################
clustalo-1.2.4/config.sub-1219- -solaris1 | -solaris1.*)
clustalo-1.2.4/config.sub:1220: os=`echo $os | sed -e 's|solaris1|sunos4|'`
clustalo-1.2.4/config.sub-1221- ;;
##############################################
clustalo-1.2.4/config.sub-1231- -gnu/linux*)
clustalo-1.2.4/config.sub:1232: os=`echo $os | sed -e 's|gnu/linux|linux-gnu|'`
clustalo-1.2.4/config.sub-1233- ;;
##############################################
clustalo-1.2.4/config.sub-1275- -nto*)
clustalo-1.2.4/config.sub:1276: os=`echo $os | sed -e 's|nto|nto-qnx|'`
clustalo-1.2.4/config.sub-1277- ;;
##############################################
clustalo-1.2.4/config.sub-1282- -mac*)
clustalo-1.2.4/config.sub:1283: os=`echo $os | sed -e 's|mac|macos|'`
clustalo-1.2.4/config.sub-1284- ;;
##############################################
clustalo-1.2.4/config.sub-1288- -linux*)
clustalo-1.2.4/config.sub:1289: os=`echo $os | sed -e 's|linux|linux-gnu|'`
clustalo-1.2.4/config.sub-1290- ;;
clustalo-1.2.4/config.sub-1291- -sunos5*)
clustalo-1.2.4/config.sub:1292: os=`echo $os | sed -e 's|sunos5|solaris2|'`
clustalo-1.2.4/config.sub-1293- ;;
clustalo-1.2.4/config.sub-1294- -sunos6*)
clustalo-1.2.4/config.sub:1295: os=`echo $os | sed -e 's|sunos6|solaris3|'`
clustalo-1.2.4/config.sub-1296- ;;
##############################################
clustalo-1.2.4/config.sub-1343- -sinix5.*)
clustalo-1.2.4/config.sub:1344: os=`echo $os | sed -e 's|sinix|sysv|'`
clustalo-1.2.4/config.sub-1345- ;;
##############################################
clustalo-1.2.4/config.sub-1394- # Get rid of the `-' at the beginning of $os.
clustalo-1.2.4/config.sub:1395: os=`echo $os | sed 's/[^-]*-//'`
clustalo-1.2.4/config.sub:1396: echo Invalid configuration \`$1\': system \`$os\' not recognized 1>&2
clustalo-1.2.4/config.sub-1397- exit 1
##############################################
clustalo-1.2.4/config.sub-1645- esac
clustalo-1.2.4/config.sub:1646: basic_machine=`echo $basic_machine | sed "s/unknown/$vendor/"`
clustalo-1.2.4/config.sub-1647- ;;
##############################################
clustalo-1.2.4/Makefile.in-70- ps-recursive uninstall-recursive
clustalo-1.2.4/Makefile.in:71:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
clustalo-1.2.4/Makefile.in-72-am__vpath_adj = case $$p in \
clustalo-1.2.4/Makefile.in:73: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
clustalo-1.2.4/Makefile.in-74- *) f=$$p;; \
clustalo-1.2.4/Makefile.in-75- esac;
clustalo-1.2.4/Makefile.in:76:am__strip_dir = `echo $$p | sed -e 's|^.*/||'`;
clustalo-1.2.4/Makefile.in-77-am__installdirs = "$(DESTDIR)$(docdir)" "$(DESTDIR)$(pkgconfigdir)"
##############################################
clustalo-1.2.4/Makefile.in-323- dot_seen=no; \
clustalo-1.2.4/Makefile.in:324: target=`echo $@ | sed s/-recursive//`; \
clustalo-1.2.4/Makefile.in-325- list='$(SUBDIRS)'; for subdir in $$list; do \
##############################################
clustalo-1.2.4/Makefile.in-358- rev="$$rev ."; \
clustalo-1.2.4/Makefile.in:359: target=`echo $@ | sed s/-recursive//`; \
clustalo-1.2.4/Makefile.in-360- for subdir in $$rev; do \
##############################################
clustalo-1.2.4/Makefile.in-431-GTAGS:
clustalo-1.2.4/Makefile.in:432: here=`$(am__cd) $(top_builddir) && pwd` \
clustalo-1.2.4/Makefile.in-433- && cd $(top_srcdir) \
##############################################
clustalo-1.2.4/Makefile.in-441- test -d $(distdir) || mkdir $(distdir)
clustalo-1.2.4/Makefile.in:442: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
clustalo-1.2.4/Makefile.in:443: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
clustalo-1.2.4/Makefile.in-444- list='$(DISTFILES)'; \
##############################################
clustalo-1.2.4/Makefile.in-455- if test -d $$d/$$file; then \
clustalo-1.2.4/Makefile.in:456: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
clustalo-1.2.4/Makefile.in-457- if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
##############################################
clustalo-1.2.4/Makefile.in-471- || exit 1; \
clustalo-1.2.4/Makefile.in:472: distdir=`$(am__cd) $(distdir) && pwd`; \
clustalo-1.2.4/Makefile.in:473: top_distdir=`$(am__cd) $(top_distdir) && pwd`; \
clustalo-1.2.4/Makefile.in-474- (cd $$subdir && \
##############################################
clustalo-1.2.4/Makefile.in-539- chmod a-w $(distdir)
clustalo-1.2.4/Makefile.in:540: dc_install_base=`$(am__cd) $(distdir)/_inst && pwd | sed -e 's,^[^:\\/]:[\\/],/,'` \
clustalo-1.2.4/Makefile.in-541- && dc_destdir="$${TMPDIR-/tmp}/am-dc-$$$$/" \
##############################################
clustalo-1.2.4/Makefile.in-570- @cd $(distuninstallcheck_dir) \
clustalo-1.2.4/Makefile.in:571: && test `$(distuninstallcheck_listfiles) | wc -l` -le 1 \
clustalo-1.2.4/Makefile.in-572- || { echo "ERROR: files left after uninstall:" ; \
##############################################
clustalo-1.2.4/Makefile.in-582- fi
clustalo-1.2.4/Makefile.in:583: @test `$(distcleancheck_listfiles) | wc -l` -eq 0 \
clustalo-1.2.4/Makefile.in-584- || { echo "ERROR: files left in build directory after distclean:" ; \
##############################################
clustalo-1.2.4/depcomp-64- case $1 in
clustalo-1.2.4/depcomp:65: */*) dir=`echo "$1" | sed -e 's|/[^/]*$|/|'`;;
clustalo-1.2.4/depcomp-66- *) dir=;;
##############################################
clustalo-1.2.4/depcomp-73-{
clustalo-1.2.4/depcomp:74: base=`echo "$1" | sed -e 's|^.*/||' -e 's/\.[^.]*$//'`
clustalo-1.2.4/depcomp-75-}
##############################################
clustalo-1.2.4/depcomp-126- sed 's|[^\\/]*$|'${DEPDIR-.deps}'/&|;s|\.\([^.]*\)$|.P\1|;s|Pobj$|Po|'`}
clustalo-1.2.4/depcomp:127:tmpdepfile=${tmpdepfile-`echo "$depfile" | sed 's/\.\([^.]*\)$/.T\1/'`}
clustalo-1.2.4/depcomp-128-
##############################################
clustalo-1.2.4/depcomp-405- sleep 1
clustalo-1.2.4/depcomp:406: i=`expr $i - 1`
clustalo-1.2.4/depcomp-407- done
clustalo-1.2.4/depcomp-408- fi
clustalo-1.2.4/depcomp:409: i=`expr $i - 1`
clustalo-1.2.4/depcomp-410- done
##############################################
clustalo-1.2.4/depcomp-425- # Do two passes, one to just change these to
clustalo-1.2.4/depcomp:426: # `$object: dependent.h' and one to simply `dependent.h:'.
clustalo-1.2.4/depcomp-427- sed "s,^[^:]*:,$object :," < "$tmpdepfile" > "$depfile"
##############################################
clustalo-1.2.4/depcomp-659- done
clustalo-1.2.4/depcomp:660: obj_suffix=`echo "$object" | sed 's/^.*\././'`
clustalo-1.2.4/depcomp-661- touch "$tmpdepfile"
##############################################
clustalo-1.2.4/INSTALL-173-directory configuration variables that were expressed in terms of
clustalo-1.2.4/INSTALL:174:`${prefix}'. Any directories that were specified during `configure',
clustalo-1.2.4/INSTALL-175-but not in terms of `${prefix}', must each be overridden at install
##############################################
clustalo-1.2.4/configure.ac-192-#AC_PATH_PROG(svnversioncommand, svnversion)
clustalo-1.2.4/configure.ac:193:#if test "X$svnversioncommand" = "X" || test `$svnversioncommand -n '.'` = "exported"; then
clustalo-1.2.4/configure.ac-194-#AC_DEFINE_UNQUOTED(SVN_VERSION, ["`cat saved_svn_version.txt`"], [repository svn version])
##############################################
clustalo-1.2.4/configure.ac-464-#if test "$SVNVERSION_BIN" != "no"; then
clustalo-1.2.4/configure.ac:465:# SVNVERSION=`$SVNVERSION_BIN -n $srcdir`
clustalo-1.2.4/configure.ac-466-# if test $SVNVERSION != "exported";
##############################################
clustalo-1.2.4/debian/tests/run-unit-test-6-if [ "$AUTOPKGTEST_TMP" = "" ] ; then
clustalo-1.2.4/debian/tests/run-unit-test:7: AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
clustalo-1.2.4/debian/tests/run-unit-test-8-fi