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              grep rough audit - static analysis tool
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clustalw-2.1+lgpl/src/Makefile.in-1250-
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clustalw-2.1+lgpl/src/Makefile.in-1265-	dot_seen=no; \
clustalw-2.1+lgpl/src/Makefile.in:1266:	target=`echo $@ | sed s/-recursive//`; \
clustalw-2.1+lgpl/src/Makefile.in-1267-	list='$(SUBDIRS)'; for subdir in $$list; do \
##############################################
clustalw-2.1+lgpl/src/Makefile.in-1300-	rev="$$rev ."; \
clustalw-2.1+lgpl/src/Makefile.in:1301:	target=`echo $@ | sed s/-recursive//`; \
clustalw-2.1+lgpl/src/Makefile.in-1302-	for subdir in $$rev; do \
##############################################
clustalw-2.1+lgpl/src/Makefile.in-1378-GTAGS:
clustalw-2.1+lgpl/src/Makefile.in:1379:	here=`$(am__cd) $(top_builddir) && pwd` \
clustalw-2.1+lgpl/src/Makefile.in-1380-	  && $(am__cd) $(top_srcdir) \
##############################################
clustalw-2.1+lgpl/src/Makefile.in-1386-distdir: $(DISTFILES)
clustalw-2.1+lgpl/src/Makefile.in:1387:	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
clustalw-2.1+lgpl/src/Makefile.in:1388:	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
clustalw-2.1+lgpl/src/Makefile.in-1389-	list='$(DISTFILES)'; \
##############################################
clustalw-2.1+lgpl/src/Makefile.in-1400-	  if test -d $$d/$$file; then \
clustalw-2.1+lgpl/src/Makefile.in:1401:	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
clustalw-2.1+lgpl/src/Makefile.in-1402-	    if test -d "$(distdir)/$$file"; then \
##############################################
clustalw-2.1+lgpl/configure-47-if test -z "$BASH_VERSION$ZSH_VERSION" \
clustalw-2.1+lgpl/configure:48:    && (test "X`print -r -- $as_echo`" = "X$as_echo") 2>/dev/null; then
clustalw-2.1+lgpl/configure-49-  as_echo='print -r --'
clustalw-2.1+lgpl/configure-50-  as_echo_n='print -rn --'
clustalw-2.1+lgpl/configure:51:elif (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
clustalw-2.1+lgpl/configure-52-  as_echo='printf %s\n'
##############################################
clustalw-2.1+lgpl/configure-54-else
clustalw-2.1+lgpl/configure:55:  if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then
clustalw-2.1+lgpl/configure-56-    as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"'
##############################################
clustalw-2.1+lgpl/configure-64-	expr "X$arg" : "X\\(.*\\)$as_nl";
clustalw-2.1+lgpl/configure:65:	arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
clustalw-2.1+lgpl/configure-66-      esac;
##############################################
clustalw-2.1+lgpl/configure-174-  eval 'test \"x\$as_lineno_1'\$as_run'\" != \"x\$as_lineno_2'\$as_run'\" &&
clustalw-2.1+lgpl/configure:175:  test \"x\`expr \$as_lineno_1'\$as_run' + 1\`\" = \"x\$as_lineno_2'\$as_run'\"' || exit 1
clustalw-2.1+lgpl/configure-176-test \$(( 1 + 1 )) = 2 || exit 1"
##############################################
clustalw-2.1+lgpl/configure-291-      case $as_dir in #(
clustalw-2.1+lgpl/configure:292:      *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
clustalw-2.1+lgpl/configure-293-      *) as_qdir=$as_dir;;
##############################################
clustalw-2.1+lgpl/configure-356-  {
clustalw-2.1+lgpl/configure:357:    as_val=`expr "$@" || test $? -eq 1`
clustalw-2.1+lgpl/configure-358-  }
##############################################
clustalw-2.1+lgpl/configure-363-# ---------------------------------
clustalw-2.1+lgpl/configure:364:# Output "`basename $0`: error: ERROR" to stderr. If LINENO and LOG_FD are
clustalw-2.1+lgpl/configure-365-# provided, also output the error to LOG_FD, referencing LINENO. Then exit the
##############################################
clustalw-2.1+lgpl/configure-426-  eval 'test "x$as_lineno_1'$as_run'" != "x$as_lineno_2'$as_run'" &&
clustalw-2.1+lgpl/configure:427:  test "x`expr $as_lineno_1'$as_run' + 1`" = "x$as_lineno_2'$as_run'"' || {
clustalw-2.1+lgpl/configure-428-  # Blame Lee E. McMahon (1931-1989) for sed's syntax.  :-)
##############################################
clustalw-2.1+lgpl/configure-517-	esac;
clustalw-2.1+lgpl/configure:518:	case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in #((
clustalw-2.1+lgpl/configure-519-	???[sx]*):;;*)false;;esac;fi
##############################################
clustalw-2.1+lgpl/configure-780-  case $ac_option in
clustalw-2.1+lgpl/configure:781:  *=*)	ac_optarg=`expr "X$ac_option" : '[^=]*=\(.*\)'` ;;
clustalw-2.1+lgpl/configure-782-  *)	ac_optarg=yes ;;
##############################################
clustalw-2.1+lgpl/configure-823-  -disable-* | --disable-*)
clustalw-2.1+lgpl/configure:824:    ac_useropt=`expr "x$ac_option" : 'x-*disable-\(.*\)'`
clustalw-2.1+lgpl/configure-825-    # Reject names that are not valid shell variable names.
##############################################
clustalw-2.1+lgpl/configure-828-    ac_useropt_orig=$ac_useropt
clustalw-2.1+lgpl/configure:829:    ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
clustalw-2.1+lgpl/configure-830-    case $ac_user_opts in
##############################################
clustalw-2.1+lgpl/configure-849-  -enable-* | --enable-*)
clustalw-2.1+lgpl/configure:850:    ac_useropt=`expr "x$ac_option" : 'x-*enable-\([^=]*\)'`
clustalw-2.1+lgpl/configure-851-    # Reject names that are not valid shell variable names.
##############################################
clustalw-2.1+lgpl/configure-854-    ac_useropt_orig=$ac_useropt
clustalw-2.1+lgpl/configure:855:    ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
clustalw-2.1+lgpl/configure-856-    case $ac_user_opts in
##############################################
clustalw-2.1+lgpl/configure-1053-  -with-* | --with-*)
clustalw-2.1+lgpl/configure:1054:    ac_useropt=`expr "x$ac_option" : 'x-*with-\([^=]*\)'`
clustalw-2.1+lgpl/configure-1055-    # Reject names that are not valid shell variable names.
##############################################
clustalw-2.1+lgpl/configure-1058-    ac_useropt_orig=$ac_useropt
clustalw-2.1+lgpl/configure:1059:    ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
clustalw-2.1+lgpl/configure-1060-    case $ac_user_opts in
##############################################
clustalw-2.1+lgpl/configure-1069-  -without-* | --without-*)
clustalw-2.1+lgpl/configure:1070:    ac_useropt=`expr "x$ac_option" : 'x-*without-\(.*\)'`
clustalw-2.1+lgpl/configure-1071-    # Reject names that are not valid shell variable names.
##############################################
clustalw-2.1+lgpl/configure-1074-    ac_useropt_orig=$ac_useropt
clustalw-2.1+lgpl/configure:1075:    ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
clustalw-2.1+lgpl/configure-1076-    case $ac_user_opts in
##############################################
clustalw-2.1+lgpl/configure-1107-  *=*)
clustalw-2.1+lgpl/configure:1108:    ac_envvar=`expr "x$ac_option" : 'x\([^=]*\)='`
clustalw-2.1+lgpl/configure-1109-    # Reject names that are not valid shell variable names.
##############################################
clustalw-2.1+lgpl/configure-1128-if test -n "$ac_prev"; then
clustalw-2.1+lgpl/configure:1129:  ac_option=--`echo $ac_prev | sed 's/_/-/g'`
clustalw-2.1+lgpl/configure-1130-  as_fn_error "missing argument to $ac_option"
##############################################
clustalw-2.1+lgpl/configure-1150-    */ )
clustalw-2.1+lgpl/configure:1151:      ac_val=`expr "X$ac_val" : 'X\(.*[^/]\)' \| "X$ac_val" : 'X\(.*\)'`
clustalw-2.1+lgpl/configure-1152-      eval $ac_var=\$ac_val;;
##############################################
clustalw-2.1+lgpl/configure-1187-ac_ls_di=`ls -di .` &&
clustalw-2.1+lgpl/configure:1188:ac_pwd_ls_di=`cd "$ac_pwd" && ls -di .` ||
clustalw-2.1+lgpl/configure-1189-  as_fn_error "working directory cannot be determined"
##############################################
clustalw-2.1+lgpl/configure-1243-case $srcdir in
clustalw-2.1+lgpl/configure:1244:*/) srcdir=`expr "X$srcdir" : 'X\(.*[^/]\)' \| "X$srcdir" : 'X\(.*\)'`;;
clustalw-2.1+lgpl/configure-1245-esac
##############################################
clustalw-2.1+lgpl/configure-1286-By default, \`make install' will install all the files in
clustalw-2.1+lgpl/configure:1287:\`$ac_default_prefix/bin', \`$ac_default_prefix/lib' etc.  You can specify
clustalw-2.1+lgpl/configure:1288:an installation prefix other than \`$ac_default_prefix' using \`--prefix',
clustalw-2.1+lgpl/configure-1289-for instance \`--prefix=\$HOME'.
##############################################
clustalw-2.1+lgpl/configure-1377-*)
clustalw-2.1+lgpl/configure:1378:  ac_dir_suffix=/`$as_echo "$ac_dir" | sed 's|^\.[\\/]||'`
clustalw-2.1+lgpl/configure-1379-  # A ".." for each directory in $ac_dir_suffix.
clustalw-2.1+lgpl/configure:1380:  ac_top_builddir_sub=`$as_echo "$ac_dir_suffix" | sed 's|/[^\\/]*|/..|g;s|/||'`
clustalw-2.1+lgpl/configure-1381-  case $ac_top_builddir_sub in
##############################################
clustalw-2.1+lgpl/configure-1892-    *\'*)
clustalw-2.1+lgpl/configure:1893:      ac_arg=`$as_echo "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;;
clustalw-2.1+lgpl/configure-1894-    esac
##############################################
clustalw-2.1+lgpl/configure-1979-      case $ac_val in
clustalw-2.1+lgpl/configure:1980:      *\'\''*) ac_val=`$as_echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
clustalw-2.1+lgpl/configure-1981-      esac
##############################################
clustalw-2.1+lgpl/configure-1996-	case $ac_val in
clustalw-2.1+lgpl/configure:1997:	*\'\''*) ac_val=`$as_echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
clustalw-2.1+lgpl/configure-1998-	esac
##############################################
clustalw-2.1+lgpl/configure-2109-    set,)
clustalw-2.1+lgpl/configure:2110:      { $as_echo "$as_me:${as_lineno-$LINENO}: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&5
clustalw-2.1+lgpl/configure:2111:$as_echo "$as_me: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&2;}
clustalw-2.1+lgpl/configure-2112-      ac_cache_corrupted=: ;;
##############################################
clustalw-2.1+lgpl/configure-2120-	# differences in whitespace do not lead to failure.
clustalw-2.1+lgpl/configure:2121:	ac_old_val_w=`echo x $ac_old_val`
clustalw-2.1+lgpl/configure:2122:	ac_new_val_w=`echo x $ac_new_val`
clustalw-2.1+lgpl/configure-2123-	if test "$ac_old_val_w" != "$ac_new_val_w"; then
##############################################
clustalw-2.1+lgpl/configure-2140-    case $ac_new_val in
clustalw-2.1+lgpl/configure:2141:    *\'*) ac_arg=$ac_var=`$as_echo "$ac_new_val" | sed "s/'/'\\\\\\\\''/g"` ;;
clustalw-2.1+lgpl/configure-2142-    *) ac_arg=$ac_var=$ac_new_val ;;
##############################################
clustalw-2.1+lgpl/configure-2217-test "x$ac_build_alias" = x &&
clustalw-2.1+lgpl/configure:2218:  ac_build_alias=`$SHELL "$ac_aux_dir/config.guess"`
clustalw-2.1+lgpl/configure-2219-test "x$ac_build_alias" = x &&
clustalw-2.1+lgpl/configure-2220-  as_fn_error "cannot guess build type; you must specify one" "$LINENO" 5
clustalw-2.1+lgpl/configure:2221:ac_cv_build=`$SHELL "$ac_aux_dir/config.sub" $ac_build_alias` ||
clustalw-2.1+lgpl/configure-2222-  as_fn_error "$SHELL $ac_aux_dir/config.sub $ac_build_alias failed" "$LINENO" 5
##############################################
clustalw-2.1+lgpl/configure-2241-IFS=$ac_save_IFS
clustalw-2.1+lgpl/configure:2242:case $build_os in *\ *) build_os=`echo "$build_os" | sed 's/ /-/g'`;; esac
clustalw-2.1+lgpl/configure-2243-
##############################################
clustalw-2.1+lgpl/configure-2252-else
clustalw-2.1+lgpl/configure:2253:  ac_cv_host=`$SHELL "$ac_aux_dir/config.sub" $host_alias` ||
clustalw-2.1+lgpl/configure-2254-    as_fn_error "$SHELL $ac_aux_dir/config.sub $host_alias failed" "$LINENO" 5
##############################################
clustalw-2.1+lgpl/configure-2274-IFS=$ac_save_IFS
clustalw-2.1+lgpl/configure:2275:case $host_os in *\ *) host_os=`echo "$host_os" | sed 's/ /-/g'`;; esac
clustalw-2.1+lgpl/configure-2276-
##############################################
clustalw-2.1+lgpl/configure-2285-else
clustalw-2.1+lgpl/configure:2286:  ac_cv_target=`$SHELL "$ac_aux_dir/config.sub" $target_alias` ||
clustalw-2.1+lgpl/configure-2287-    as_fn_error "$SHELL $ac_aux_dir/config.sub $target_alias failed" "$LINENO" 5
##############################################
clustalw-2.1+lgpl/configure-2307-IFS=$ac_save_IFS
clustalw-2.1+lgpl/configure:2308:case $target_os in *\ *) target_os=`echo "$target_os" | sed 's/ /-/g'`;; esac
clustalw-2.1+lgpl/configure-2309-
##############################################
clustalw-2.1+lgpl/configure-2479-if (
clustalw-2.1+lgpl/configure:2480:   set X `ls -Lt "$srcdir/configure" conftest.file 2> /dev/null`
clustalw-2.1+lgpl/configure-2481-   if test "$*" = "X"; then
clustalw-2.1+lgpl/configure-2482-      # -L didn't work.
clustalw-2.1+lgpl/configure:2483:      set X `ls -t "$srcdir/configure" conftest.file`
clustalw-2.1+lgpl/configure-2484-   fi
##############################################
clustalw-2.1+lgpl/configure-2515-ac_script='s/[\\$]/&&/g;s/;s,x,x,$//'
clustalw-2.1+lgpl/configure:2516:program_transform_name=`$as_echo "$program_transform_name" | sed "$ac_script"`
clustalw-2.1+lgpl/configure-2517-
clustalw-2.1+lgpl/configure-2518-# expand $ac_aux_dir to an absolute path
clustalw-2.1+lgpl/configure:2519:am_aux_dir=`cd $ac_aux_dir && pwd`
clustalw-2.1+lgpl/configure-2520-
##############################################
clustalw-2.1+lgpl/configure-2660-	   { test -f "$as_dir/$ac_prog$ac_exec_ext" && $as_test_x "$as_dir/$ac_prog$ac_exec_ext"; } || continue
clustalw-2.1+lgpl/configure:2661:	   case `"$as_dir/$ac_prog$ac_exec_ext" --version 2>&1` in #(
clustalw-2.1+lgpl/configure-2662-	     'mkdir (GNU coreutils) '* | \
##############################################
clustalw-2.1+lgpl/configure-2739-set x ${MAKE-make}
clustalw-2.1+lgpl/configure:2740:ac_make=`$as_echo "$2" | sed 's/+/p/g; s/[^a-zA-Z0-9_]/_/g'`
clustalw-2.1+lgpl/configure-2741-if { as_var=ac_cv_prog_make_${ac_make}_set; eval "test \"\${$as_var+set}\" = set"; }; then :
##############################################
clustalw-2.1+lgpl/configure-2749-# GNU make sometimes prints "make[1]: Entering...", which would confuse us.
clustalw-2.1+lgpl/configure:2750:case `${MAKE-make} -f conftest.make 2>/dev/null` in
clustalw-2.1+lgpl/configure-2751-  *@@@%%%=?*=@@@%%%*)
##############################################
clustalw-2.1+lgpl/configure-2776-
clustalw-2.1+lgpl/configure:2777:if test "`cd $srcdir && pwd`" != "`pwd`"; then
clustalw-2.1+lgpl/configure-2778-  # Use -I$(srcdir) only when $(srcdir) != ., so that make's output
##############################################
clustalw-2.1+lgpl/configure-2842-set x ${MAKE-make}
clustalw-2.1+lgpl/configure:2843:ac_make=`$as_echo "$2" | sed 's/+/p/g; s/[^a-zA-Z0-9_]/_/g'`
clustalw-2.1+lgpl/configure-2844-if { as_var=ac_cv_prog_make_${ac_make}_set; eval "test \"\${$as_var+set}\" = set"; }; then :
##############################################
clustalw-2.1+lgpl/configure-2852-# GNU make sometimes prints "make[1]: Entering...", which would confuse us.
clustalw-2.1+lgpl/configure:2853:case `${MAKE-make} -f conftest.make 2>/dev/null` in
clustalw-2.1+lgpl/configure-2854-  *@@@%%%=?*=@@@%%%*)
##############################################
clustalw-2.1+lgpl/configure-3219-$as_echo_n "checking whether the C compiler works... " >&6; }
clustalw-2.1+lgpl/configure:3220:ac_link_default=`$as_echo "$ac_link" | sed 's/ -o *conftest[^ ]*//'`
clustalw-2.1+lgpl/configure-3221-
##############################################
clustalw-2.1+lgpl/configure-3263-	then :; else
clustalw-2.1+lgpl/configure:3264:	   ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
clustalw-2.1+lgpl/configure-3265-	fi
##############################################
clustalw-2.1+lgpl/configure-3324-    *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) ;;
clustalw-2.1+lgpl/configure:3325:    *.* ) ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
clustalw-2.1+lgpl/configure-3326-	  break;;
##############################################
clustalw-2.1+lgpl/configure-3433-    *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM ) ;;
clustalw-2.1+lgpl/configure:3434:    *) ac_cv_objext=`expr "$ac_file" : '.*\.\(.*\)'`
clustalw-2.1+lgpl/configure-3435-       break;;
##############################################
clustalw-2.1+lgpl/configure-3683-# Ignore all kinds of additional output from `make'.
clustalw-2.1+lgpl/configure:3684:case `$am_make -s -f confmf 2> /dev/null` in #(
clustalw-2.1+lgpl/configure-3685-*the\ am__doit\ target*)
##############################################
clustalw-2.1+lgpl/configure-3693-   echo '.include "confinc"' > confmf
clustalw-2.1+lgpl/configure:3694:   case `$am_make -s -f confmf 2> /dev/null` in #(
clustalw-2.1+lgpl/configure-3695-   *the\ am__doit\ target*)
##############################################
clustalw-2.1+lgpl/configure-3754-  if test "$am_compiler_list" = ""; then
clustalw-2.1+lgpl/configure:3755:     am_compiler_list=`sed -n 's/^#*\([a-zA-Z0-9]*\))$/\1/p' < ./depcomp`
clustalw-2.1+lgpl/configure-3756-  fi
##############################################
clustalw-2.1+lgpl/configure-4138-  if test "$am_compiler_list" = ""; then
clustalw-2.1+lgpl/configure:4139:     am_compiler_list=`sed -n 's/^#*\([a-zA-Z0-9]*\))$/\1/p' < ./depcomp`
clustalw-2.1+lgpl/configure-4140-  fi
##############################################
clustalw-2.1+lgpl/configure-4500-  # Check for GNU $ac_path_GREP
clustalw-2.1+lgpl/configure:4501:case `"$ac_path_GREP" --version 2>&1` in
clustalw-2.1+lgpl/configure-4502-*GNU*)
##############################################
clustalw-2.1+lgpl/configure-4566-  # Check for GNU $ac_path_EGREP
clustalw-2.1+lgpl/configure:4567:case `"$ac_path_EGREP" --version 2>&1` in
clustalw-2.1+lgpl/configure-4568-*GNU*)
##############################################
clustalw-2.1+lgpl/configure-4730-do :
clustalw-2.1+lgpl/configure:4731:  as_ac_Header=`$as_echo "ac_cv_header_$ac_header" | $as_tr_sh`
clustalw-2.1+lgpl/configure-4732-ac_fn_cxx_check_header_compile "$LINENO" "$ac_header" "$as_ac_Header" "$ac_includes_default
##############################################
clustalw-2.1+lgpl/configure-4736-  cat >>confdefs.h <<_ACEOF
clustalw-2.1+lgpl/configure:4737:#define `$as_echo "HAVE_$ac_header" | $as_tr_cpp` 1
clustalw-2.1+lgpl/configure-4738-_ACEOF
##############################################
clustalw-2.1+lgpl/configure-5192-  ac_script='s/\$U\././;s/\.o$//;s/\.obj$//'
clustalw-2.1+lgpl/configure:5193:  ac_i=`$as_echo "$ac_i" | sed "$ac_script"`
clustalw-2.1+lgpl/configure-5194-  # 2. Prepend LIBOBJDIR.  When used with automake>=1.10 LIBOBJDIR
##############################################
clustalw-2.1+lgpl/configure-5279-if test -z "$BASH_VERSION$ZSH_VERSION" \
clustalw-2.1+lgpl/configure:5280:    && (test "X`print -r -- $as_echo`" = "X$as_echo") 2>/dev/null; then
clustalw-2.1+lgpl/configure-5281-  as_echo='print -r --'
clustalw-2.1+lgpl/configure-5282-  as_echo_n='print -rn --'
clustalw-2.1+lgpl/configure:5283:elif (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
clustalw-2.1+lgpl/configure-5284-  as_echo='printf %s\n'
##############################################
clustalw-2.1+lgpl/configure-5286-else
clustalw-2.1+lgpl/configure:5287:  if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then
clustalw-2.1+lgpl/configure-5288-    as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"'
##############################################
clustalw-2.1+lgpl/configure-5296-	expr "X$arg" : "X\\(.*\\)$as_nl";
clustalw-2.1+lgpl/configure:5297:	arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
clustalw-2.1+lgpl/configure-5298-      esac;
##############################################
clustalw-2.1+lgpl/configure-5372-# ---------------------------------
clustalw-2.1+lgpl/configure:5373:# Output "`basename $0`: error: ERROR" to stderr. If LINENO and LOG_FD are
clustalw-2.1+lgpl/configure-5374-# provided, also output the error to LOG_FD, referencing LINENO. Then exit the
##############################################
clustalw-2.1+lgpl/configure-5444-  {
clustalw-2.1+lgpl/configure:5445:    as_val=`expr "$@" || test $? -eq 1`
clustalw-2.1+lgpl/configure-5446-  }
##############################################
clustalw-2.1+lgpl/configure-5548-      case $as_dir in #(
clustalw-2.1+lgpl/configure:5549:      *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
clustalw-2.1+lgpl/configure-5550-      *) as_qdir=$as_dir;;
##############################################
clustalw-2.1+lgpl/configure-5605-	esac;
clustalw-2.1+lgpl/configure:5606:	case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in #((
clustalw-2.1+lgpl/configure-5607-	???[sx]*):;;*)false;;esac;fi
##############################################
clustalw-2.1+lgpl/configure-5695-cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
clustalw-2.1+lgpl/configure:5696:ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
clustalw-2.1+lgpl/configure-5697-ac_cs_version="\\
##############################################
clustalw-2.1+lgpl/configure-5720-  --*=*)
clustalw-2.1+lgpl/configure:5721:    ac_option=`expr "X$1" : 'X\([^=]*\)='`
clustalw-2.1+lgpl/configure:5722:    ac_optarg=`expr "X$1" : 'X[^=]*=\(.*\)'`
clustalw-2.1+lgpl/configure-5723-    ac_shift=:
##############################################
clustalw-2.1+lgpl/configure-5744-    case $ac_optarg in
clustalw-2.1+lgpl/configure:5745:    *\'*) ac_optarg=`$as_echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"` ;;
clustalw-2.1+lgpl/configure-5746-    esac
##############################################
clustalw-2.1+lgpl/configure-5751-    case $ac_optarg in
clustalw-2.1+lgpl/configure:5752:    *\'*) ac_optarg=`$as_echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"` ;;
clustalw-2.1+lgpl/configure-5753-    esac
##############################################
clustalw-2.1+lgpl/configure-5880-fi
clustalw-2.1+lgpl/configure:5881:ac_cs_awk_cr=`$AWK 'BEGIN { print "a\rb" }' </dev/null 2>/dev/null`
clustalw-2.1+lgpl/configure-5882-if test "$ac_cs_awk_cr" = "a${ac_cr}b"; then
##############################################
clustalw-2.1+lgpl/configure-5897-  as_fn_error "could not make $CONFIG_STATUS" "$LINENO" 5
clustalw-2.1+lgpl/configure:5898:ac_delim_num=`echo "$ac_subst_vars" | grep -c '$'`
clustalw-2.1+lgpl/configure-5899-ac_delim='%!_!# '
##############################################
clustalw-2.1+lgpl/configure-5903-
clustalw-2.1+lgpl/configure:5904:  ac_delim_n=`sed -n "s/.*$ac_delim\$/X/p" conf$$subs.awk | grep -c X`
clustalw-2.1+lgpl/configure-5905-  if test $ac_delim_n = $ac_delim_num; then
##############################################
clustalw-2.1+lgpl/configure-6033-for ac_last_try in false false :; do
clustalw-2.1+lgpl/configure:6034:  ac_t=`sed -n "/$ac_delim/p" confdefs.h`
clustalw-2.1+lgpl/configure-6035-  if test -z "$ac_t"; then
##############################################
clustalw-2.1+lgpl/configure-6165-      esac
clustalw-2.1+lgpl/configure:6166:      case $ac_f in *\'*) ac_f=`$as_echo "$ac_f" | sed "s/'/'\\\\\\\\''/g"`;; esac
clustalw-2.1+lgpl/configure-6167-      as_fn_append ac_file_inputs " '$ac_f'"
##############################################
clustalw-2.1+lgpl/configure-6224-*)
clustalw-2.1+lgpl/configure:6225:  ac_dir_suffix=/`$as_echo "$ac_dir" | sed 's|^\.[\\/]||'`
clustalw-2.1+lgpl/configure-6226-  # A ".." for each directory in $ac_dir_suffix.
clustalw-2.1+lgpl/configure:6227:  ac_top_builddir_sub=`$as_echo "$ac_dir_suffix" | sed 's|/[^\\/]*|/..|g;s|/||'`
clustalw-2.1+lgpl/configure-6228-  case $ac_top_builddir_sub in
##############################################
clustalw-2.1+lgpl/configure-6285-/@mandir@/p'
clustalw-2.1+lgpl/configure:6286:case `eval "sed -n \"\$ac_sed_dataroot\" $ac_file_inputs"` in
clustalw-2.1+lgpl/configure-6287-*datarootdir*) ac_datarootdir_seen=yes;;
##############################################
clustalw-2.1+lgpl/configure-6302-
clustalw-2.1+lgpl/configure:6303:# Neutralize VPATH when `$srcdir' = `.'.
clustalw-2.1+lgpl/configure-6304-# Shell code in configure.ac might set extrasub.
##############################################
clustalw-2.1+lgpl/configure-6330-test -z "$ac_datarootdir_hack$ac_datarootdir_seen" &&
clustalw-2.1+lgpl/configure:6331:  { ac_out=`sed -n '/\${datarootdir}/p' "$tmp/out"`; test -n "$ac_out"; } &&
clustalw-2.1+lgpl/configure:6332:  { ac_out=`sed -n '/^[	 ]*datarootdir[	 ]*:*=/p' "$tmp/out"`; test -z "$ac_out"; } &&
clustalw-2.1+lgpl/configure-6333-  { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: $ac_file contains a reference to the variable \`datarootdir'
##############################################
clustalw-2.1+lgpl/configure-6375-    * )
clustalw-2.1+lgpl/configure:6376:      _am_stamp_count=`expr $_am_stamp_count + 1` ;;
clustalw-2.1+lgpl/configure-6377-  esac
##############################################
clustalw-2.1+lgpl/configure-6422-    # Strip MF so we end up with the name of the file.
clustalw-2.1+lgpl/configure:6423:    mf=`echo "$mf" | sed -e 's/:.*$//'`
clustalw-2.1+lgpl/configure-6424-    # Check whether this is an Automake generated Makefile or not.
##############################################
clustalw-2.1+lgpl/configure-6459-    # from the Makefile without running `make'.
clustalw-2.1+lgpl/configure:6460:    DEPDIR=`sed -n 's/^DEPDIR = //p' < "$mf"`
clustalw-2.1+lgpl/configure-6461-    test -z "$DEPDIR" && continue
clustalw-2.1+lgpl/configure:6462:    am__include=`sed -n 's/^am__include = //p' < "$mf"`
clustalw-2.1+lgpl/configure-6463-    test -z "am__include" && continue
clustalw-2.1+lgpl/configure:6464:    am__quote=`sed -n 's/^am__quote = //p' < "$mf"`
clustalw-2.1+lgpl/configure-6465-    # When using ansi2knr, U may be empty or an underscore; expand it
clustalw-2.1+lgpl/configure:6466:    U=`sed -n 's/^U = //p' < "$mf"`
clustalw-2.1+lgpl/configure-6467-    # Find all dependency output files, they are included files with
##############################################
clustalw-2.1+lgpl/config.sub-56-
clustalw-2.1+lgpl/config.sub:57:me=`echo "$0" | sed -e 's,.*/,,'`
clustalw-2.1+lgpl/config.sub-58-
##############################################
clustalw-2.1+lgpl/config.sub-120-# Here we must recognize all the valid KERNEL-OS combinations.
clustalw-2.1+lgpl/config.sub:121:maybe_os=`echo $1 | sed 's/^\(.*\)-\([^-]*-[^-]*\)$/\2/'`
clustalw-2.1+lgpl/config.sub-122-case $maybe_os in
##############################################
clustalw-2.1+lgpl/config.sub-127-    os=-$maybe_os
clustalw-2.1+lgpl/config.sub:128:    basic_machine=`echo $1 | sed 's/^\(.*\)-\([^-]*-[^-]*\)$/\1/'`
clustalw-2.1+lgpl/config.sub-129-    ;;
clustalw-2.1+lgpl/config.sub-130-  *)
clustalw-2.1+lgpl/config.sub:131:    basic_machine=`echo $1 | sed 's/-[^-]*$//'`
clustalw-2.1+lgpl/config.sub-132-    if [ $basic_machine != $1 ]
clustalw-2.1+lgpl/config.sub:133:    then os=`echo $1 | sed 's/.*-/-/'`
clustalw-2.1+lgpl/config.sub-134-    else os=; fi
##############################################
clustalw-2.1+lgpl/config.sub-181-		os=-sco5v6
clustalw-2.1+lgpl/config.sub:182:		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
clustalw-2.1+lgpl/config.sub-183-		;;
##############################################
clustalw-2.1+lgpl/config.sub-185-		os=-sco3.2v5
clustalw-2.1+lgpl/config.sub:186:		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
clustalw-2.1+lgpl/config.sub-187-		;;
##############################################
clustalw-2.1+lgpl/config.sub-189-		os=-sco3.2v4
clustalw-2.1+lgpl/config.sub:190:		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
clustalw-2.1+lgpl/config.sub-191-		;;
clustalw-2.1+lgpl/config.sub-192-	-sco3.2.[4-9]*)
clustalw-2.1+lgpl/config.sub:193:		os=`echo $os | sed -e 's/sco3.2./sco3.2v/'`
clustalw-2.1+lgpl/config.sub:194:		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
clustalw-2.1+lgpl/config.sub-195-		;;
##############################################
clustalw-2.1+lgpl/config.sub-197-		# Don't forget version if it is 3.2v4 or newer.
clustalw-2.1+lgpl/config.sub:198:		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
clustalw-2.1+lgpl/config.sub-199-		;;
##############################################
clustalw-2.1+lgpl/config.sub-201-		# Don't forget version if it is 3.2v4 or newer.
clustalw-2.1+lgpl/config.sub:202:		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
clustalw-2.1+lgpl/config.sub-203-		;;
##############################################
clustalw-2.1+lgpl/config.sub-205-		os=-sco3.2v2
clustalw-2.1+lgpl/config.sub:206:		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
clustalw-2.1+lgpl/config.sub-207-		;;
clustalw-2.1+lgpl/config.sub-208-	-udk*)
clustalw-2.1+lgpl/config.sub:209:		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
clustalw-2.1+lgpl/config.sub-210-		;;
##############################################
clustalw-2.1+lgpl/config.sub-212-		os=-isc2.2
clustalw-2.1+lgpl/config.sub:213:		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
clustalw-2.1+lgpl/config.sub-214-		;;
##############################################
clustalw-2.1+lgpl/config.sub-218-	-isc*)
clustalw-2.1+lgpl/config.sub:219:		basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
clustalw-2.1+lgpl/config.sub-220-		;;
##############################################
clustalw-2.1+lgpl/config.sub-224-	-ptx*)
clustalw-2.1+lgpl/config.sub:225:		basic_machine=`echo $1 | sed -e 's/86-.*/86-sequent/'`
clustalw-2.1+lgpl/config.sub-226-		;;
clustalw-2.1+lgpl/config.sub-227-	-windowsnt*)
clustalw-2.1+lgpl/config.sub:228:		os=`echo $os | sed -e 's/windowsnt/winnt/'`
clustalw-2.1+lgpl/config.sub-229-		;;
##############################################
clustalw-2.1+lgpl/config.sub-318-	*-*-*)
clustalw-2.1+lgpl/config.sub:319:		echo Invalid configuration \`$1\': machine \`$basic_machine\' not recognized 1>&2
clustalw-2.1+lgpl/config.sub-320-		exit 1
##############################################
clustalw-2.1+lgpl/config.sub-427-	amd64-*)
clustalw-2.1+lgpl/config.sub:428:		basic_machine=x86_64-`echo $basic_machine | sed 's/^[^-]*-//'`
clustalw-2.1+lgpl/config.sub-429-		;;
##############################################
clustalw-2.1+lgpl/config.sub-469-	blackfin-*)
clustalw-2.1+lgpl/config.sub:470:		basic_machine=bfin-`echo $basic_machine | sed 's/^[^-]*-//'`
clustalw-2.1+lgpl/config.sub-471-		os=-linux
##############################################
clustalw-2.1+lgpl/config.sub-672-	i*86v32)
clustalw-2.1+lgpl/config.sub:673:		basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
clustalw-2.1+lgpl/config.sub-674-		os=-sysv32
##############################################
clustalw-2.1+lgpl/config.sub-676-	i*86v4*)
clustalw-2.1+lgpl/config.sub:677:		basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
clustalw-2.1+lgpl/config.sub-678-		os=-sysv4
##############################################
clustalw-2.1+lgpl/config.sub-680-	i*86v)
clustalw-2.1+lgpl/config.sub:681:		basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
clustalw-2.1+lgpl/config.sub-682-		os=-sysv
##############################################
clustalw-2.1+lgpl/config.sub-684-	i*86sol2)
clustalw-2.1+lgpl/config.sub:685:		basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
clustalw-2.1+lgpl/config.sub-686-		os=-solaris2
##############################################
clustalw-2.1+lgpl/config.sub-714-	m68knommu-*)
clustalw-2.1+lgpl/config.sub:715:		basic_machine=m68k-`echo $basic_machine | sed 's/^[^-]*-//'`
clustalw-2.1+lgpl/config.sub-716-		os=-linux
##############################################
clustalw-2.1+lgpl/config.sub-744-	mips3*-*)
clustalw-2.1+lgpl/config.sub:745:		basic_machine=`echo $basic_machine | sed -e 's/mips3/mips64/'`
clustalw-2.1+lgpl/config.sub-746-		;;
clustalw-2.1+lgpl/config.sub-747-	mips3*)
clustalw-2.1+lgpl/config.sub:748:		basic_machine=`echo $basic_machine | sed -e 's/mips3/mips64/'`-unknown
clustalw-2.1+lgpl/config.sub-749-		;;
##############################################
clustalw-2.1+lgpl/config.sub-762-	ms1-*)
clustalw-2.1+lgpl/config.sub:763:		basic_machine=`echo $basic_machine | sed -e 's/ms1-/mt-/'`
clustalw-2.1+lgpl/config.sub-764-		;;
##############################################
clustalw-2.1+lgpl/config.sub-867-	parisc-*)
clustalw-2.1+lgpl/config.sub:868:		basic_machine=hppa-`echo $basic_machine | sed 's/^[^-]*-//'`
clustalw-2.1+lgpl/config.sub-869-		os=-linux
##############################################
clustalw-2.1+lgpl/config.sub-883-	pc98-*)
clustalw-2.1+lgpl/config.sub:884:		basic_machine=i386-`echo $basic_machine | sed 's/^[^-]*-//'`
clustalw-2.1+lgpl/config.sub-885-		;;
##############################################
clustalw-2.1+lgpl/config.sub-898-	pentium-* | p5-* | k5-* | k6-* | nexgen-* | viac3-*)
clustalw-2.1+lgpl/config.sub:899:		basic_machine=i586-`echo $basic_machine | sed 's/^[^-]*-//'`
clustalw-2.1+lgpl/config.sub-900-		;;
clustalw-2.1+lgpl/config.sub-901-	pentiumpro-* | p6-* | 6x86-* | athlon-*)
clustalw-2.1+lgpl/config.sub:902:		basic_machine=i686-`echo $basic_machine | sed 's/^[^-]*-//'`
clustalw-2.1+lgpl/config.sub-903-		;;
clustalw-2.1+lgpl/config.sub-904-	pentiumii-* | pentium2-* | pentiumiii-* | pentium3-*)
clustalw-2.1+lgpl/config.sub:905:		basic_machine=i686-`echo $basic_machine | sed 's/^[^-]*-//'`
clustalw-2.1+lgpl/config.sub-906-		;;
clustalw-2.1+lgpl/config.sub-907-	pentium4-*)
clustalw-2.1+lgpl/config.sub:908:		basic_machine=i786-`echo $basic_machine | sed 's/^[^-]*-//'`
clustalw-2.1+lgpl/config.sub-909-		;;
##############################################
clustalw-2.1+lgpl/config.sub-916-		;;
clustalw-2.1+lgpl/config.sub:917:	ppc-*)	basic_machine=powerpc-`echo $basic_machine | sed 's/^[^-]*-//'`
clustalw-2.1+lgpl/config.sub-918-		;;
##############################################
clustalw-2.1+lgpl/config.sub-922-	ppcle-* | powerpclittle-*)
clustalw-2.1+lgpl/config.sub:923:		basic_machine=powerpcle-`echo $basic_machine | sed 's/^[^-]*-//'`
clustalw-2.1+lgpl/config.sub-924-		;;
##############################################
clustalw-2.1+lgpl/config.sub-926-		;;
clustalw-2.1+lgpl/config.sub:927:	ppc64-*) basic_machine=powerpc64-`echo $basic_machine | sed 's/^[^-]*-//'`
clustalw-2.1+lgpl/config.sub-928-		;;
##############################################
clustalw-2.1+lgpl/config.sub-932-	ppc64le-* | powerpc64little-*)
clustalw-2.1+lgpl/config.sub:933:		basic_machine=powerpc64le-`echo $basic_machine | sed 's/^[^-]*-//'`
clustalw-2.1+lgpl/config.sub-934-		;;
##############################################
clustalw-2.1+lgpl/config.sub-1224-	*)
clustalw-2.1+lgpl/config.sub:1225:		echo Invalid configuration \`$1\': machine \`$basic_machine\' not recognized 1>&2
clustalw-2.1+lgpl/config.sub-1226-		exit 1
##############################################
clustalw-2.1+lgpl/config.sub-1232-	*-digital*)
clustalw-2.1+lgpl/config.sub:1233:		basic_machine=`echo $basic_machine | sed 's/digital.*/dec/'`
clustalw-2.1+lgpl/config.sub-1234-		;;
clustalw-2.1+lgpl/config.sub-1235-	*-commodore*)
clustalw-2.1+lgpl/config.sub:1236:		basic_machine=`echo $basic_machine | sed 's/commodore.*/cbm/'`
clustalw-2.1+lgpl/config.sub-1237-		;;
##############################################
clustalw-2.1+lgpl/config.sub-1250-	-solaris1 | -solaris1.*)
clustalw-2.1+lgpl/config.sub:1251:		os=`echo $os | sed -e 's|solaris1|sunos4|'`
clustalw-2.1+lgpl/config.sub-1252-		;;
##############################################
clustalw-2.1+lgpl/config.sub-1262-	-gnu/linux*)
clustalw-2.1+lgpl/config.sub:1263:		os=`echo $os | sed -e 's|gnu/linux|linux-gnu|'`
clustalw-2.1+lgpl/config.sub-1264-		;;
##############################################
clustalw-2.1+lgpl/config.sub-1307-	-nto*)
clustalw-2.1+lgpl/config.sub:1308:		os=`echo $os | sed -e 's|nto|nto-qnx|'`
clustalw-2.1+lgpl/config.sub-1309-		;;
##############################################
clustalw-2.1+lgpl/config.sub-1314-	-mac*)
clustalw-2.1+lgpl/config.sub:1315:		os=`echo $os | sed -e 's|mac|macos|'`
clustalw-2.1+lgpl/config.sub-1316-		;;
##############################################
clustalw-2.1+lgpl/config.sub-1320-	-linux*)
clustalw-2.1+lgpl/config.sub:1321:		os=`echo $os | sed -e 's|linux|linux-gnu|'`
clustalw-2.1+lgpl/config.sub-1322-		;;
clustalw-2.1+lgpl/config.sub-1323-	-sunos5*)
clustalw-2.1+lgpl/config.sub:1324:		os=`echo $os | sed -e 's|sunos5|solaris2|'`
clustalw-2.1+lgpl/config.sub-1325-		;;
clustalw-2.1+lgpl/config.sub-1326-	-sunos6*)
clustalw-2.1+lgpl/config.sub:1327:		os=`echo $os | sed -e 's|sunos6|solaris3|'`
clustalw-2.1+lgpl/config.sub-1328-		;;
##############################################
clustalw-2.1+lgpl/config.sub-1375-	-sinix5.*)
clustalw-2.1+lgpl/config.sub:1376:		os=`echo $os | sed -e 's|sinix|sysv|'`
clustalw-2.1+lgpl/config.sub-1377-		;;
##############################################
clustalw-2.1+lgpl/config.sub-1429-		# Get rid of the `-' at the beginning of $os.
clustalw-2.1+lgpl/config.sub:1430:		os=`echo $os | sed 's/[^-]*-//'`
clustalw-2.1+lgpl/config.sub:1431:		echo Invalid configuration \`$1\': system \`$os\' not recognized 1>&2
clustalw-2.1+lgpl/config.sub-1432-		exit 1
##############################################
clustalw-2.1+lgpl/config.sub-1680-		esac
clustalw-2.1+lgpl/config.sub:1681:		basic_machine=`echo $basic_machine | sed "s/unknown/$vendor/"`
clustalw-2.1+lgpl/config.sub-1682-		;;
##############################################
clustalw-2.1+lgpl/install-sh-217-      fi
clustalw-2.1+lgpl/install-sh:218:      cp_umask=`expr '(' 777 - $mode % 1000 ')' $u_plus_rw`;;
clustalw-2.1+lgpl/install-sh-219-    *)
##############################################
clustalw-2.1+lgpl/install-sh-269-      dstdir=$dst
clustalw-2.1+lgpl/install-sh:270:      dst=$dstdir/`basename "$src"`
clustalw-2.1+lgpl/install-sh-271-      dstdir_status=0
##############################################
clustalw-2.1+lgpl/install-sh-351-		   # FreeBSD 6.1 mkdir -m -p sets mode of existing directory.
clustalw-2.1+lgpl/install-sh:352:		   ls_ld_tmpdir=`ls -ld "$tmpdir"`
clustalw-2.1+lgpl/install-sh-353-		   case $ls_ld_tmpdir in
##############################################
clustalw-2.1+lgpl/install-sh-358-		   $mkdirprog -m$different_mode -p -- "$tmpdir" && {
clustalw-2.1+lgpl/install-sh:359:		     ls_ld_tmpdir_1=`ls -ld "$tmpdir"`
clustalw-2.1+lgpl/install-sh-360-		     test "$ls_ld_tmpdir" = "$ls_ld_tmpdir_1"
##############################################
clustalw-2.1+lgpl/install-sh-418-	    case $prefix in
clustalw-2.1+lgpl/install-sh:419:	      *\'*) qprefix=`echo "$prefix" | sed "s/'/'\\\\\\\\''/g"`;;
clustalw-2.1+lgpl/install-sh-420-	      *) qprefix=$prefix;;
##############################################
clustalw-2.1+lgpl/install-sh-467-    if $copy_on_change &&
clustalw-2.1+lgpl/install-sh:468:       old=`LC_ALL=C ls -dlL "$dst"	2>/dev/null` &&
clustalw-2.1+lgpl/install-sh:469:       new=`LC_ALL=C ls -dlL "$dsttmp"	2>/dev/null` &&
clustalw-2.1+lgpl/install-sh-470-
##############################################
clustalw-2.1+lgpl/aclocal.m4-67-# $ac_aux_dir to `$srcdir/foo'.  In other projects, it is set to
clustalw-2.1+lgpl/aclocal.m4:68:# `$srcdir', `$srcdir/..', or `$srcdir/../..'.
clustalw-2.1+lgpl/aclocal.m4-69-#
##############################################
clustalw-2.1+lgpl/aclocal.m4-91-# iff we strip the leading $srcdir from $ac_aux_dir.  That would be:
clustalw-2.1+lgpl/aclocal.m4:92:#   am_aux_dir='\$(top_srcdir)/'`expr "$ac_aux_dir" : "$srcdir//*\(.*\)"`
clustalw-2.1+lgpl/aclocal.m4-93-# and then we would define $MISSING as
##############################################
clustalw-2.1+lgpl/aclocal.m4-107-# expand $ac_aux_dir to an absolute path
clustalw-2.1+lgpl/aclocal.m4:108:am_aux_dir=`cd $ac_aux_dir && pwd`
clustalw-2.1+lgpl/aclocal.m4-109-])
##############################################
clustalw-2.1+lgpl/aclocal.m4-208-  if test "$am_compiler_list" = ""; then
clustalw-2.1+lgpl/aclocal.m4:209:     am_compiler_list=`sed -n ['s/^#*\([a-zA-Z0-9]*\))$/\1/p'] < ./depcomp`
clustalw-2.1+lgpl/aclocal.m4-210-  fi
##############################################
clustalw-2.1+lgpl/aclocal.m4-354-    # Strip MF so we end up with the name of the file.
clustalw-2.1+lgpl/aclocal.m4:355:    mf=`echo "$mf" | sed -e 's/:.*$//'`
clustalw-2.1+lgpl/aclocal.m4-356-    # Check whether this is an Automake generated Makefile or not.
##############################################
clustalw-2.1+lgpl/aclocal.m4-363-    if sed -n 's,^#.*generated by automake.*,X,p' "$mf" | grep X >/dev/null 2>&1; then
clustalw-2.1+lgpl/aclocal.m4:364:      dirpart=`AS_DIRNAME("$mf")`
clustalw-2.1+lgpl/aclocal.m4-365-    else
##############################################
clustalw-2.1+lgpl/aclocal.m4-369-    # from the Makefile without running `make'.
clustalw-2.1+lgpl/aclocal.m4:370:    DEPDIR=`sed -n 's/^DEPDIR = //p' < "$mf"`
clustalw-2.1+lgpl/aclocal.m4-371-    test -z "$DEPDIR" && continue
clustalw-2.1+lgpl/aclocal.m4:372:    am__include=`sed -n 's/^am__include = //p' < "$mf"`
clustalw-2.1+lgpl/aclocal.m4-373-    test -z "am__include" && continue
clustalw-2.1+lgpl/aclocal.m4:374:    am__quote=`sed -n 's/^am__quote = //p' < "$mf"`
clustalw-2.1+lgpl/aclocal.m4-375-    # When using ansi2knr, U may be empty or an underscore; expand it
clustalw-2.1+lgpl/aclocal.m4:376:    U=`sed -n 's/^U = //p' < "$mf"`
clustalw-2.1+lgpl/aclocal.m4-377-    # Find all dependency output files, they are included files with
##############################################
clustalw-2.1+lgpl/aclocal.m4-385-      test -f "$dirpart/$file" && continue
clustalw-2.1+lgpl/aclocal.m4:386:      fdir=`AS_DIRNAME(["$file"])`
clustalw-2.1+lgpl/aclocal.m4-387-      AS_MKDIR_P([$dirpart/$fdir])
##############################################
clustalw-2.1+lgpl/aclocal.m4-452-AC_REQUIRE([AC_PROG_INSTALL])dnl
clustalw-2.1+lgpl/aclocal.m4:453:if test "`cd $srcdir && pwd`" != "`pwd`"; then
clustalw-2.1+lgpl/aclocal.m4-454-  # Use -I$(srcdir) only when $(srcdir) != ., so that make's output
##############################################
clustalw-2.1+lgpl/aclocal.m4-554-    * )
clustalw-2.1+lgpl/aclocal.m4:555:      _am_stamp_count=`expr $_am_stamp_count + 1` ;;
clustalw-2.1+lgpl/aclocal.m4-556-  esac
clustalw-2.1+lgpl/aclocal.m4-557-done
clustalw-2.1+lgpl/aclocal.m4:558:echo "timestamp for $_am_arg" >`AS_DIRNAME(["$_am_arg"])`/stamp-h[]$_am_stamp_count])
clustalw-2.1+lgpl/aclocal.m4-559-
##############################################
clustalw-2.1+lgpl/aclocal.m4-629-# Ignore all kinds of additional output from `make'.
clustalw-2.1+lgpl/aclocal.m4:630:case `$am_make -s -f confmf 2> /dev/null` in #(
clustalw-2.1+lgpl/aclocal.m4-631-*the\ am__doit\ target*)
##############################################
clustalw-2.1+lgpl/aclocal.m4-639-   echo '.include "confinc"' > confmf
clustalw-2.1+lgpl/aclocal.m4:640:   case `$am_make -s -f confmf 2> /dev/null` in #(
clustalw-2.1+lgpl/aclocal.m4-641-   *the\ am__doit\ target*)
##############################################
clustalw-2.1+lgpl/aclocal.m4-792-if (
clustalw-2.1+lgpl/aclocal.m4:793:   set X `ls -Lt "$srcdir/configure" conftest.file 2> /dev/null`
clustalw-2.1+lgpl/aclocal.m4-794-   if test "$[*]" = "X"; then
clustalw-2.1+lgpl/aclocal.m4-795-      # -L didn't work.
clustalw-2.1+lgpl/aclocal.m4:796:      set X `ls -t "$srcdir/configure" conftest.file`
clustalw-2.1+lgpl/aclocal.m4-797-   fi
##############################################
clustalw-2.1+lgpl/Makefile.in-86-  while test -n "$$dir1"; do \
clustalw-2.1+lgpl/Makefile.in:87:    first=`echo "$$dir1" | sed -e "$$sed_first"`; \
clustalw-2.1+lgpl/Makefile.in-88-    if test "$$first" != "."; then \
clustalw-2.1+lgpl/Makefile.in-89-      if test "$$first" = ".."; then \
clustalw-2.1+lgpl/Makefile.in:90:        dir2=`echo "$$dir0" | sed -e "$$sed_last"`/"$$dir2"; \
clustalw-2.1+lgpl/Makefile.in:91:        dir0=`echo "$$dir0" | sed -e "$$sed_butlast"`; \
clustalw-2.1+lgpl/Makefile.in-92-      else \
clustalw-2.1+lgpl/Makefile.in:93:        first2=`echo "$$dir2" | sed -e "$$sed_first"`; \
clustalw-2.1+lgpl/Makefile.in-94-        if test "$$first2" = "$$first"; then \
clustalw-2.1+lgpl/Makefile.in:95:          dir2=`echo "$$dir2" | sed -e "$$sed_rest"`; \
clustalw-2.1+lgpl/Makefile.in-96-        else \
##############################################
clustalw-2.1+lgpl/Makefile.in-101-    fi; \
clustalw-2.1+lgpl/Makefile.in:102:    dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \
clustalw-2.1+lgpl/Makefile.in-103-  done; \
##############################################
clustalw-2.1+lgpl/Makefile.in-271-	dot_seen=no; \
clustalw-2.1+lgpl/Makefile.in:272:	target=`echo $@ | sed s/-recursive//`; \
clustalw-2.1+lgpl/Makefile.in-273-	list='$(SUBDIRS)'; for subdir in $$list; do \
##############################################
clustalw-2.1+lgpl/Makefile.in-306-	rev="$$rev ."; \
clustalw-2.1+lgpl/Makefile.in:307:	target=`echo $@ | sed s/-recursive//`; \
clustalw-2.1+lgpl/Makefile.in-308-	for subdir in $$rev; do \
##############################################
clustalw-2.1+lgpl/Makefile.in-384-GTAGS:
clustalw-2.1+lgpl/Makefile.in:385:	here=`$(am__cd) $(top_builddir) && pwd` \
clustalw-2.1+lgpl/Makefile.in-386-	  && $(am__cd) $(top_srcdir) \
##############################################
clustalw-2.1+lgpl/Makefile.in-394-	test -d "$(distdir)" || mkdir "$(distdir)"
clustalw-2.1+lgpl/Makefile.in:395:	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
clustalw-2.1+lgpl/Makefile.in:396:	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
clustalw-2.1+lgpl/Makefile.in-397-	list='$(DISTFILES)'; \
##############################################
clustalw-2.1+lgpl/Makefile.in-408-	  if test -d $$d/$$file; then \
clustalw-2.1+lgpl/Makefile.in:409:	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
clustalw-2.1+lgpl/Makefile.in-410-	    if test -d "$(distdir)/$$file"; then \
##############################################
clustalw-2.1+lgpl/Makefile.in-516-	test -d $(distdir)/_build || exit 0; \
clustalw-2.1+lgpl/Makefile.in:517:	dc_install_base=`$(am__cd) $(distdir)/_inst && pwd | sed -e 's,^[^:\\/]:[\\/],/,'` \
clustalw-2.1+lgpl/Makefile.in-518-	  && dc_destdir="$${TMPDIR-/tmp}/am-dc-$$$$/" \
##############################################
clustalw-2.1+lgpl/Makefile.in-550-	@$(am__cd) '$(distuninstallcheck_dir)' \
clustalw-2.1+lgpl/Makefile.in:551:	&& test `$(distuninstallcheck_listfiles) | wc -l` -le 1 \
clustalw-2.1+lgpl/Makefile.in-552-	   || { echo "ERROR: files left after uninstall:" ; \
##############################################
clustalw-2.1+lgpl/Makefile.in-562-	fi
clustalw-2.1+lgpl/Makefile.in:563:	@test `$(distcleancheck_listfiles) | wc -l` -eq 0 \
clustalw-2.1+lgpl/Makefile.in-564-	  || { echo "ERROR: files left in build directory after distclean:" ; \
##############################################
clustalw-2.1+lgpl/missing-139-       # Could not run --version or --help.  This is probably someone
clustalw-2.1+lgpl/missing:140:       # running `$TOOL --version' or `$TOOL --help' to check whether
clustalw-2.1+lgpl/missing-141-       # $TOOL exists and not knowing $TOOL uses missing.
##############################################
clustalw-2.1+lgpl/missing-173-         from any GNU archive site."
clustalw-2.1+lgpl/missing:174:    files=`sed -n 's/^[ ]*A[CM]_CONFIG_HEADER(\([^)]*\)).*/\1/p' ${configure_ac}`
clustalw-2.1+lgpl/missing-175-    test -z "$files" && files="config.h"
##############################################
clustalw-2.1+lgpl/missing-202-         proper tools for further handling them.
clustalw-2.1+lgpl/missing:203:         You can get \`$1' as part of \`Autoconf' from any GNU
clustalw-2.1+lgpl/missing-204-         archive site."
clustalw-2.1+lgpl/missing-205-
clustalw-2.1+lgpl/missing:206:    file=`echo "$*" | sed -n "$sed_output"`
clustalw-2.1+lgpl/missing:207:    test -z "$file" && file=`echo "$*" | sed -n "$sed_minuso"`
clustalw-2.1+lgpl/missing-208-    if test -f "$file"; then
##############################################
clustalw-2.1+lgpl/missing-231-	*.y)
clustalw-2.1+lgpl/missing:232:	    SRCFILE=`echo "$LASTARG" | sed 's/y$/c/'`
clustalw-2.1+lgpl/missing-233-	    if test -f "$SRCFILE"; then
##############################################
clustalw-2.1+lgpl/missing-235-	    fi
clustalw-2.1+lgpl/missing:236:	    SRCFILE=`echo "$LASTARG" | sed 's/y$/h/'`
clustalw-2.1+lgpl/missing-237-	    if test -f "$SRCFILE"; then
##############################################
clustalw-2.1+lgpl/missing-261-	*.l)
clustalw-2.1+lgpl/missing:262:	    SRCFILE=`echo "$LASTARG" | sed 's/l$/c/'`
clustalw-2.1+lgpl/missing-263-	    if test -f "$SRCFILE"; then
##############################################
clustalw-2.1+lgpl/missing-280-
clustalw-2.1+lgpl/missing:281:    file=`echo "$*" | sed -n "$sed_output"`
clustalw-2.1+lgpl/missing:282:    test -z "$file" && file=`echo "$*" | sed -n "$sed_minuso"`
clustalw-2.1+lgpl/missing-283-    if test -f "$file"; then
##############################################
clustalw-2.1+lgpl/missing-300-    # The file to touch is that specified with -o ...
clustalw-2.1+lgpl/missing:301:    file=`echo "$*" | sed -n "$sed_output"`
clustalw-2.1+lgpl/missing:302:    test -z "$file" && file=`echo "$*" | sed -n "$sed_minuso"`
clustalw-2.1+lgpl/missing-303-    if test -z "$file"; then
clustalw-2.1+lgpl/missing-304-      # ... or it is the one specified with @setfilename ...
clustalw-2.1+lgpl/missing:305:      infile=`echo "$*" | sed 's/.* \([^ ]*\) *$/\1/'`
clustalw-2.1+lgpl/missing-306-      file=`sed -n '
##############################################
clustalw-2.1+lgpl/missing-312-      # ... or it is derived from the source name (dir/f.texi becomes f.info)
clustalw-2.1+lgpl/missing:313:      test -z "$file" && file=`echo "$infile" | sed 's,.*/,,;s,.[^.]*$,,'`.info
clustalw-2.1+lgpl/missing-314-    fi
##############################################
clustalw-2.1+lgpl/missing-336-	*o*)
clustalw-2.1+lgpl/missing:337:	    firstarg=`echo "$firstarg" | sed s/o//`
clustalw-2.1+lgpl/missing-338-	    tar "$firstarg" "$@" && exit 0
##############################################
clustalw-2.1+lgpl/missing-342-	*h*)
clustalw-2.1+lgpl/missing:343:	    firstarg=`echo "$firstarg" | sed s/h//`
clustalw-2.1+lgpl/missing-344-	    tar "$firstarg" "$@" && exit 0
##############################################
clustalw-2.1+lgpl/m4/Makefile.in-49-DIST_SOURCES =
clustalw-2.1+lgpl/m4/Makefile.in:50:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
clustalw-2.1+lgpl/m4/Makefile.in-51-am__vpath_adj = case $$p in \
clustalw-2.1+lgpl/m4/Makefile.in:52:    $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
clustalw-2.1+lgpl/m4/Makefile.in-53-    *) f=$$p;; \
clustalw-2.1+lgpl/m4/Makefile.in-54-  esac;
clustalw-2.1+lgpl/m4/Makefile.in:55:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
clustalw-2.1+lgpl/m4/Makefile.in-56-am__install_max = 40
clustalw-2.1+lgpl/m4/Makefile.in-57-am__nobase_strip_setup = \
clustalw-2.1+lgpl/m4/Makefile.in:58:  srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
clustalw-2.1+lgpl/m4/Makefile.in-59-am__nobase_strip = \
##############################################
clustalw-2.1+lgpl/m4/Makefile.in-238-	@list='$(m4data_DATA)'; test -n "$(m4datadir)" || list=; \
clustalw-2.1+lgpl/m4/Makefile.in:239:	files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
clustalw-2.1+lgpl/m4/Makefile.in-240-	test -n "$$files" || exit 0; \
##############################################
clustalw-2.1+lgpl/m4/Makefile.in-250-distdir: $(DISTFILES)
clustalw-2.1+lgpl/m4/Makefile.in:251:	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
clustalw-2.1+lgpl/m4/Makefile.in:252:	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
clustalw-2.1+lgpl/m4/Makefile.in-253-	list='$(DISTFILES)'; \
##############################################
clustalw-2.1+lgpl/m4/Makefile.in-264-	  if test -d $$d/$$file; then \
clustalw-2.1+lgpl/m4/Makefile.in:265:	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
clustalw-2.1+lgpl/m4/Makefile.in-266-	    if test -d "$(distdir)/$$file"; then \
##############################################
clustalw-2.1+lgpl/config.guess-40-
clustalw-2.1+lgpl/config.guess:41:me=`echo "$0" | sed -e 's,.*/,,'`
clustalw-2.1+lgpl/config.guess-42-
##############################################
clustalw-2.1+lgpl/config.guess-109-: ${TMPDIR=/tmp} ;
clustalw-2.1+lgpl/config.guess:110: { tmp=`(umask 077 && mktemp -d "$TMPDIR/cgXXXXXX") 2>/dev/null` && test -n "$tmp" && test -d "$tmp" ; } ||
clustalw-2.1+lgpl/config.guess-111- { test -n "$RANDOM" && tmp=$TMPDIR/cg$$-$RANDOM && (umask 077 && mkdir $tmp) ; } ||
##############################################
clustalw-2.1+lgpl/config.guess-195-	    *)
clustalw-2.1+lgpl/config.guess:196:		release=`echo ${UNAME_RELEASE}|sed -e 's/[-_].*/\./'`
clustalw-2.1+lgpl/config.guess-197-		;;
##############################################
clustalw-2.1+lgpl/config.guess-222-	*4.0)
clustalw-2.1+lgpl/config.guess:223:		UNAME_RELEASE=`/usr/sbin/sizer -v | awk '{print $3}'`
clustalw-2.1+lgpl/config.guess-224-		;;
clustalw-2.1+lgpl/config.guess-225-	*5.*)
clustalw-2.1+lgpl/config.guess:226:	        UNAME_RELEASE=`/usr/sbin/sizer -v | awk '{print $4}'`
clustalw-2.1+lgpl/config.guess-227-		;;
##############################################
clustalw-2.1+lgpl/config.guess-232-	# types through head -n 1, so we only detect the type of CPU 0.
clustalw-2.1+lgpl/config.guess:233:	ALPHA_CPU_TYPE=`/usr/sbin/psrinfo -v | sed -n -e 's/^  The alpha \(.*\) processor.*$/\1/p' | head -n 1`
clustalw-2.1+lgpl/config.guess-234-	case "$ALPHA_CPU_TYPE" in
##############################################
clustalw-2.1+lgpl/config.guess-270-	# 1.2 uses "1.2" for uname -r.
clustalw-2.1+lgpl/config.guess:271:	echo ${UNAME_MACHINE}-dec-osf`echo ${UNAME_RELEASE} | sed -e 's/^[PVTX]//' | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz'`
clustalw-2.1+lgpl/config.guess-272-	exit ;;
##############################################
clustalw-2.1+lgpl/config.guess-327-    s390x:SunOS:*:*)
clustalw-2.1+lgpl/config.guess:328:	echo ${UNAME_MACHINE}-ibm-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
clustalw-2.1+lgpl/config.guess-329-	exit ;;
clustalw-2.1+lgpl/config.guess-330-    sun4H:SunOS:5.*:*)
clustalw-2.1+lgpl/config.guess:331:	echo sparc-hal-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
clustalw-2.1+lgpl/config.guess-332-	exit ;;
clustalw-2.1+lgpl/config.guess-333-    sun4*:SunOS:5.*:* | tadpole*:SunOS:5.*:*)
clustalw-2.1+lgpl/config.guess:334:	echo sparc-sun-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
clustalw-2.1+lgpl/config.guess-335-	exit ;;
##############################################
clustalw-2.1+lgpl/config.guess-349-	fi
clustalw-2.1+lgpl/config.guess:350:	echo ${SUN_ARCH}-pc-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
clustalw-2.1+lgpl/config.guess-351-	exit ;;
##############################################
clustalw-2.1+lgpl/config.guess-355-	# it's likely to be more like Solaris than SunOS4.
clustalw-2.1+lgpl/config.guess:356:	echo sparc-sun-solaris3`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
clustalw-2.1+lgpl/config.guess-357-	exit ;;
##############################################
clustalw-2.1+lgpl/config.guess-364-	# Japanese Language versions have a version number like `4.1.3-JL'.
clustalw-2.1+lgpl/config.guess:365:	echo sparc-sun-sunos`echo ${UNAME_RELEASE}|sed -e 's/-/_/'`
clustalw-2.1+lgpl/config.guess-366-	exit ;;
##############################################
clustalw-2.1+lgpl/config.guess-370-    sun*:*:4.2BSD:*)
clustalw-2.1+lgpl/config.guess:371:	UNAME_RELEASE=`(sed 1q /etc/motd | awk '{print substr($5,1,3)}') 2>/dev/null`
clustalw-2.1+lgpl/config.guess-372-	test "x${UNAME_RELEASE}" = "x" && UNAME_RELEASE=3
##############################################
clustalw-2.1+lgpl/config.guess-452-	$CC_FOR_BUILD -o $dummy $dummy.c &&
clustalw-2.1+lgpl/config.guess:453:	  dummyarg=`echo "${UNAME_RELEASE}" | sed -n 's/\([0-9]*\).*/\1/p'` &&
clustalw-2.1+lgpl/config.guess:454:	  SYSTEM_NAME=`$dummy $dummyarg` &&
clustalw-2.1+lgpl/config.guess-455-	    { echo "$SYSTEM_NAME"; exit; }
##############################################
clustalw-2.1+lgpl/config.guess-508-    *:IRIX*:*:*)
clustalw-2.1+lgpl/config.guess:509:	echo mips-sgi-irix`echo ${UNAME_RELEASE}|sed -e 's/-/_/g'`
clustalw-2.1+lgpl/config.guess-510-	exit ;;
##############################################
clustalw-2.1+lgpl/config.guess-538-EOF
clustalw-2.1+lgpl/config.guess:539:		if $CC_FOR_BUILD -o $dummy $dummy.c && SYSTEM_NAME=`$dummy`
clustalw-2.1+lgpl/config.guess-540-		then
##############################################
clustalw-2.1+lgpl/config.guess-551-    *:AIX:*:[456])
clustalw-2.1+lgpl/config.guess:552:	IBM_CPU_ID=`/usr/sbin/lsdev -C -c processor -S available | sed 1q | awk '{ print $1 }'`
clustalw-2.1+lgpl/config.guess-553-	if /usr/sbin/lsattr -El ${IBM_CPU_ID} | grep ' POWER' >/dev/null 2>&1; then
##############################################
clustalw-2.1+lgpl/config.guess-586-    9000/[34678]??:HP-UX:*:*)
clustalw-2.1+lgpl/config.guess:587:	HPUX_REV=`echo ${UNAME_RELEASE}|sed -e 's/[^.]*.[0B]*//'`
clustalw-2.1+lgpl/config.guess-588-	case "${UNAME_MACHINE}" in
##############################################
clustalw-2.1+lgpl/config.guess-640-EOF
clustalw-2.1+lgpl/config.guess:641:		    (CCOPTS= $CC_FOR_BUILD -o $dummy $dummy.c 2>/dev/null) && HP_ARCH=`$dummy`
clustalw-2.1+lgpl/config.guess-642-		    test -z "$HP_ARCH" && HP_ARCH=hppa
##############################################
clustalw-2.1+lgpl/config.guess-668-    ia64:HP-UX:*:*)
clustalw-2.1+lgpl/config.guess:669:	HPUX_REV=`echo ${UNAME_RELEASE}|sed -e 's/[^.]*.[0B]*//'`
clustalw-2.1+lgpl/config.guess-670-	echo ia64-hp-hpux${HPUX_REV}
##############################################
clustalw-2.1+lgpl/config.guess-698-EOF
clustalw-2.1+lgpl/config.guess:699:	$CC_FOR_BUILD -o $dummy $dummy.c && SYSTEM_NAME=`$dummy` &&
clustalw-2.1+lgpl/config.guess-700-		{ echo "$SYSTEM_NAME"; exit; }
##############################################
clustalw-2.1+lgpl/config.guess-769-        FUJITSU_SYS=`uname -p | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/\///'`
clustalw-2.1+lgpl/config.guess:770:        FUJITSU_REL=`echo ${UNAME_RELEASE} | sed -e 's/ /_/'`
clustalw-2.1+lgpl/config.guess-771-        echo "${FUJITSU_PROC}-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}"
##############################################
clustalw-2.1+lgpl/config.guess-774-        FUJITSU_SYS=`uname -p | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/\///'`
clustalw-2.1+lgpl/config.guess:775:        FUJITSU_REL=`echo ${UNAME_RELEASE} | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/ /_/'`
clustalw-2.1+lgpl/config.guess-776-        echo "sparc-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}"
##############################################
clustalw-2.1+lgpl/config.guess-789-	    pc98)
clustalw-2.1+lgpl/config.guess:790:		echo i386-unknown-freebsd`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'` ;;
clustalw-2.1+lgpl/config.guess-791-	    amd64)
clustalw-2.1+lgpl/config.guess:792:		echo x86_64-unknown-freebsd`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'` ;;
clustalw-2.1+lgpl/config.guess-793-	    *)
clustalw-2.1+lgpl/config.guess:794:		echo ${UNAME_MACHINE}-unknown-freebsd`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'` ;;
clustalw-2.1+lgpl/config.guess-795-	esac
##############################################
clustalw-2.1+lgpl/config.guess-843-    prep*:SunOS:5.*:*)
clustalw-2.1+lgpl/config.guess:844:	echo powerpcle-unknown-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
clustalw-2.1+lgpl/config.guess-845-	exit ;;
##############################################
clustalw-2.1+lgpl/config.guess-847-	# the GNU system
clustalw-2.1+lgpl/config.guess:848:	echo `echo ${UNAME_MACHINE}|sed -e 's,[-/].*$,,'`-unknown-gnu`echo ${UNAME_RELEASE}|sed -e 's,/.*$,,'`
clustalw-2.1+lgpl/config.guess-849-	exit ;;
##############################################
clustalw-2.1+lgpl/config.guess-851-	# other systems with GNU libc and userland
clustalw-2.1+lgpl/config.guess:852:	echo ${UNAME_MACHINE}-unknown-`echo ${UNAME_SYSTEM} | sed 's,^[^/]*/,,' | tr '[A-Z]' '[a-z]'``echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'`-gnu
clustalw-2.1+lgpl/config.guess-853-	exit ;;
##############################################
clustalw-2.1+lgpl/config.guess-1055-    i*86:*:4.*:* | i*86:SYSTEM_V:4.*:*)
clustalw-2.1+lgpl/config.guess:1056:	UNAME_REL=`echo ${UNAME_RELEASE} | sed 's/\/MP$//'`
clustalw-2.1+lgpl/config.guess-1057-	if grep Novell /usr/include/link.h >/dev/null 2>/dev/null; then
##############################################
clustalw-2.1+lgpl/config.guess-1312-    *:DragonFly:*:*)
clustalw-2.1+lgpl/config.guess:1313:	echo ${UNAME_MACHINE}-unknown-dragonfly`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'`
clustalw-2.1+lgpl/config.guess-1314-	exit ;;
##############################################
clustalw-2.1+lgpl/config.guess-1325-    i*86:skyos:*:*)
clustalw-2.1+lgpl/config.guess:1326:	echo ${UNAME_MACHINE}-pc-skyos`echo ${UNAME_RELEASE}` | sed -e 's/ .*$//'
clustalw-2.1+lgpl/config.guess-1327-	exit ;;
##############################################
clustalw-2.1+lgpl/config.guess-1453-
clustalw-2.1+lgpl/config.guess:1454:$CC_FOR_BUILD -o $dummy $dummy.c 2>/dev/null && SYSTEM_NAME=`$dummy` &&
clustalw-2.1+lgpl/config.guess-1455-	{ echo "$SYSTEM_NAME"; exit; }
##############################################
clustalw-2.1+lgpl/depcomp-67-  sed 's|[^\\/]*$|'${DEPDIR-.deps}'/&|;s|\.\([^.]*\)$|.P\1|;s|Pobj$|Po|'`}
clustalw-2.1+lgpl/depcomp:68:tmpdepfile=${tmpdepfile-`echo "$depfile" | sed 's/\.\([^.]*\)$/.T\1/'`}
clustalw-2.1+lgpl/depcomp-69-
##############################################
clustalw-2.1+lgpl/depcomp-224-  # Version 6 uses the directory in both cases.
clustalw-2.1+lgpl/depcomp:225:  dir=`echo "$object" | sed -e 's|/[^/]*$|/|'`
clustalw-2.1+lgpl/depcomp-226-  test "x$dir" = "x$object" && dir=
clustalw-2.1+lgpl/depcomp:227:  base=`echo "$object" | sed -e 's|^.*/||' -e 's/\.o$//' -e 's/\.lo$//'`
clustalw-2.1+lgpl/depcomp-228-  if test "$libtool" = yes; then
##############################################
clustalw-2.1+lgpl/depcomp-253-    # Do two passes, one to just change these to
clustalw-2.1+lgpl/depcomp:254:    # `$object: dependent.h' and one to simply `dependent.h:'.
clustalw-2.1+lgpl/depcomp-255-    sed -e "s,^.*\.[a-z]*:,$object:," < "$tmpdepfile" > "$depfile"
##############################################
clustalw-2.1+lgpl/depcomp-295-  # Do two passes, one to just change these to
clustalw-2.1+lgpl/depcomp:296:  # `$object: dependent.h' and one to simply `dependent.h:'.
clustalw-2.1+lgpl/depcomp-297-  sed "s,^[^:]*:,$object :," < "$tmpdepfile" > "$depfile"
##############################################
clustalw-2.1+lgpl/depcomp-311-  # Much of this is similar to the tru64 case; see comments there.
clustalw-2.1+lgpl/depcomp:312:  dir=`echo "$object" | sed -e 's|/[^/]*$|/|'`
clustalw-2.1+lgpl/depcomp-313-  test "x$dir" = "x$object" && dir=
clustalw-2.1+lgpl/depcomp:314:  base=`echo "$object" | sed -e 's|^.*/||' -e 's/\.o$//' -e 's/\.lo$//'`
clustalw-2.1+lgpl/depcomp-315-  if test "$libtool" = yes; then
##############################################
clustalw-2.1+lgpl/depcomp-355-   # Subdirectories are respected.
clustalw-2.1+lgpl/depcomp:356:   dir=`echo "$object" | sed -e 's|/[^/]*$|/|'`
clustalw-2.1+lgpl/depcomp-357-   test "x$dir" = "x$object" && dir=
clustalw-2.1+lgpl/depcomp:358:   base=`echo "$object" | sed -e 's|^.*/||' -e 's/\.o$//' -e 's/\.lo$//'`
clustalw-2.1+lgpl/depcomp-359-
##############################################
clustalw-2.1+lgpl/depcomp-501-  done
clustalw-2.1+lgpl/depcomp:502:  obj_suffix=`echo "$object" | sed 's/^.*\././'`
clustalw-2.1+lgpl/depcomp-503-  touch "$tmpdepfile"
##############################################
clustalw-2.1+lgpl/debian/tests/run-unit-test-6-if [ "$AUTOPKGTEST_TMP" = "" ] ; then
clustalw-2.1+lgpl/debian/tests/run-unit-test:7:  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
clustalw-2.1+lgpl/debian/tests/run-unit-test-8-fi