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              grep rough audit - static analysis tool
                  v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
diamond-aligner-2.0.5/docs/6 Distributed computing.MD-25-
diamond-aligner-2.0.5/docs/6 Distributed computing.MD:26:Here `$TMPDIR` refers to a local temporary directory, whereas `$PTMPDIR`
diamond-aligner-2.0.5/docs/6 Distributed computing.MD-27-refers to a directory in the parallel file system where the file-based stacks
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diamond-aligner-2.0.5/docs/6 Distributed computing.MD-39-
diamond-aligner-2.0.5/docs/6 Distributed computing.MD:40:Note that `$PTMPDIR` must refer to the same location as used during the
diamond-aligner-2.0.5/docs/6 Distributed computing.MD-41-initialization, and it must be accessible from any of the compute nodes
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diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/NEON/PacketMath.h-229-  Packet4f r = c;
diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/NEON/PacketMath.h:230:  asm volatile(
diamond-aligner-2.0.5/src/lib/Eigen/src/Core/arch/NEON/PacketMath.h-231-    "vmla.f32 %q[r], %q[a], %q[b]"
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diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h-972-              EIGEN_ASM_COMMENT("begin step of gebp micro kernel 3pX4"); \
diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h:973:              EIGEN_ASM_COMMENT("Note: these asm comments work around bug 935!"); \
diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h-974-              internal::prefetch(blA+(3*K+16)*LhsProgress); \
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diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h-1098-              EIGEN_ASM_COMMENT("begin step of gebp micro kernel 3pX1"); \
diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1099:              EIGEN_ASM_COMMENT("Note: these asm comments work around bug 935!"); \
diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h-1100-              traits.loadLhs(&blA[(0+3*K)*LhsProgress], A0);  \
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diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h-1199-
diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1200:          // NOTE: the begin/end asm comments below work around bug 935!
diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h-1201-          // but they are not enough for gcc>=6 without FMA (bug 1637)
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diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h-1310-              EIGEN_ASM_COMMENT("begin step of gebp micro kernel 2pX1");          \
diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1311:              EIGEN_ASM_COMMENT("Note: these asm comments work around bug 935!"); \
diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h-1312-              traits.loadLhs(&blA[(0+2*K)*LhsProgress], A0);                      \
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diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h-1401-              EIGEN_ASM_COMMENT("begin step of gebp micro kernel 1pX4");        \
diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1402:              EIGEN_ASM_COMMENT("Note: these asm comments work around bug 935!"); \
diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h-1403-              traits.loadLhs(&blA[(0+1*K)*LhsProgress], A0);                    \
##############################################
diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h-1480-              EIGEN_ASM_COMMENT("begin step of gebp micro kernel 1pX1");        \
diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1481:              EIGEN_ASM_COMMENT("Note: these asm comments work around bug 935!"); \
diamond-aligner-2.0.5/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h-1482-              traits.loadLhs(&blA[(0+1*K)*LhsProgress], A0);                    \
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diamond-aligner-2.0.5/src/lib/Eigen/src/Eigenvalues/Tridiagonalization.h-337-  *       \f$ H_i = (I - h_i v_i v_i^T) \f$
diamond-aligner-2.0.5/src/lib/Eigen/src/Eigenvalues/Tridiagonalization.h:338:  * where \f$ h_i = hCoeffs[i]\f$ is the \f$ i \f$th Householder coefficient and
diamond-aligner-2.0.5/src/lib/Eigen/src/Eigenvalues/Tridiagonalization.h-339-  * \f$ v_i \f$ is the Householder vector defined by