===========================================================
.___ __ __
_________________ __ __ __| _/|__|/ |_
/ ___\_` __ \__ \ | | \/ __ | | \\_ __\
/ /_/ > | \// __ \| | / /_/ | | || |
\___ /|__| (____ /____/\____ | |__||__|
/_____/ \/ \/
grep rough audit - static analysis tool
v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
emboss-6.6.0+dfsg/config.sub-57-
emboss-6.6.0+dfsg/config.sub:58:me=`echo "$0" | sed -e 's,.*/,,'`
emboss-6.6.0+dfsg/config.sub-59-
##############################################
emboss-6.6.0+dfsg/config.sub-122-# Here we must recognize all the valid KERNEL-OS combinations.
emboss-6.6.0+dfsg/config.sub:123:maybe_os=`echo $1 | sed 's/^\(.*\)-\([^-]*-[^-]*\)$/\2/'`
emboss-6.6.0+dfsg/config.sub-124-case $maybe_os in
##############################################
emboss-6.6.0+dfsg/config.sub-130- os=-$maybe_os
emboss-6.6.0+dfsg/config.sub:131: basic_machine=`echo $1 | sed 's/^\(.*\)-\([^-]*-[^-]*\)$/\1/'`
emboss-6.6.0+dfsg/config.sub-132- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-134- os=-linux-android
emboss-6.6.0+dfsg/config.sub:135: basic_machine=`echo $1 | sed 's/^\(.*\)-\([^-]*-[^-]*\)$/\1/'`-unknown
emboss-6.6.0+dfsg/config.sub-136- ;;
emboss-6.6.0+dfsg/config.sub-137- *)
emboss-6.6.0+dfsg/config.sub:138: basic_machine=`echo $1 | sed 's/-[^-]*$//'`
emboss-6.6.0+dfsg/config.sub-139- if [ $basic_machine != $1 ]
emboss-6.6.0+dfsg/config.sub:140: then os=`echo $1 | sed 's/.*-/-/'`
emboss-6.6.0+dfsg/config.sub-141- else os=; fi
##############################################
emboss-6.6.0+dfsg/config.sub-188- os=-sco5v6
emboss-6.6.0+dfsg/config.sub:189: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
emboss-6.6.0+dfsg/config.sub-190- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-192- os=-sco3.2v5
emboss-6.6.0+dfsg/config.sub:193: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
emboss-6.6.0+dfsg/config.sub-194- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-196- os=-sco3.2v4
emboss-6.6.0+dfsg/config.sub:197: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
emboss-6.6.0+dfsg/config.sub-198- ;;
emboss-6.6.0+dfsg/config.sub-199- -sco3.2.[4-9]*)
emboss-6.6.0+dfsg/config.sub:200: os=`echo $os | sed -e 's/sco3.2./sco3.2v/'`
emboss-6.6.0+dfsg/config.sub:201: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
emboss-6.6.0+dfsg/config.sub-202- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-204- # Don't forget version if it is 3.2v4 or newer.
emboss-6.6.0+dfsg/config.sub:205: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
emboss-6.6.0+dfsg/config.sub-206- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-208- # Don't forget version if it is 3.2v4 or newer.
emboss-6.6.0+dfsg/config.sub:209: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
emboss-6.6.0+dfsg/config.sub-210- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-212- os=-sco3.2v2
emboss-6.6.0+dfsg/config.sub:213: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
emboss-6.6.0+dfsg/config.sub-214- ;;
emboss-6.6.0+dfsg/config.sub-215- -udk*)
emboss-6.6.0+dfsg/config.sub:216: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
emboss-6.6.0+dfsg/config.sub-217- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-219- os=-isc2.2
emboss-6.6.0+dfsg/config.sub:220: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
emboss-6.6.0+dfsg/config.sub-221- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-225- -isc*)
emboss-6.6.0+dfsg/config.sub:226: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
emboss-6.6.0+dfsg/config.sub-227- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-237- -ptx*)
emboss-6.6.0+dfsg/config.sub:238: basic_machine=`echo $1 | sed -e 's/86-.*/86-sequent/'`
emboss-6.6.0+dfsg/config.sub-239- ;;
emboss-6.6.0+dfsg/config.sub-240- -windowsnt*)
emboss-6.6.0+dfsg/config.sub:241: os=`echo $os | sed -e 's/windowsnt/winnt/'`
emboss-6.6.0+dfsg/config.sub-242- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-363- *-*-*)
emboss-6.6.0+dfsg/config.sub:364: echo Invalid configuration \`$1\': machine \`$basic_machine\' not recognized 1>&2
emboss-6.6.0+dfsg/config.sub-365- exit 1
##############################################
emboss-6.6.0+dfsg/config.sub-481- amd64-*)
emboss-6.6.0+dfsg/config.sub:482: basic_machine=x86_64-`echo $basic_machine | sed 's/^[^-]*-//'`
emboss-6.6.0+dfsg/config.sub-483- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-523- blackfin-*)
emboss-6.6.0+dfsg/config.sub:524: basic_machine=bfin-`echo $basic_machine | sed 's/^[^-]*-//'`
emboss-6.6.0+dfsg/config.sub-525- os=-linux
##############################################
emboss-6.6.0+dfsg/config.sub-531- c54x-*)
emboss-6.6.0+dfsg/config.sub:532: basic_machine=tic54x-`echo $basic_machine | sed 's/^[^-]*-//'`
emboss-6.6.0+dfsg/config.sub-533- ;;
emboss-6.6.0+dfsg/config.sub-534- c55x-*)
emboss-6.6.0+dfsg/config.sub:535: basic_machine=tic55x-`echo $basic_machine | sed 's/^[^-]*-//'`
emboss-6.6.0+dfsg/config.sub-536- ;;
emboss-6.6.0+dfsg/config.sub-537- c6x-*)
emboss-6.6.0+dfsg/config.sub:538: basic_machine=tic6x-`echo $basic_machine | sed 's/^[^-]*-//'`
emboss-6.6.0+dfsg/config.sub-539- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-734- i*86v32)
emboss-6.6.0+dfsg/config.sub:735: basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
emboss-6.6.0+dfsg/config.sub-736- os=-sysv32
##############################################
emboss-6.6.0+dfsg/config.sub-738- i*86v4*)
emboss-6.6.0+dfsg/config.sub:739: basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
emboss-6.6.0+dfsg/config.sub-740- os=-sysv4
##############################################
emboss-6.6.0+dfsg/config.sub-742- i*86v)
emboss-6.6.0+dfsg/config.sub:743: basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
emboss-6.6.0+dfsg/config.sub-744- os=-sysv
##############################################
emboss-6.6.0+dfsg/config.sub-746- i*86sol2)
emboss-6.6.0+dfsg/config.sub:747: basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
emboss-6.6.0+dfsg/config.sub-748- os=-solaris2
##############################################
emboss-6.6.0+dfsg/config.sub-776- m68knommu-*)
emboss-6.6.0+dfsg/config.sub:777: basic_machine=m68k-`echo $basic_machine | sed 's/^[^-]*-//'`
emboss-6.6.0+dfsg/config.sub-778- os=-linux
##############################################
emboss-6.6.0+dfsg/config.sub-809- mips3*-*)
emboss-6.6.0+dfsg/config.sub:810: basic_machine=`echo $basic_machine | sed -e 's/mips3/mips64/'`
emboss-6.6.0+dfsg/config.sub-811- ;;
emboss-6.6.0+dfsg/config.sub-812- mips3*)
emboss-6.6.0+dfsg/config.sub:813: basic_machine=`echo $basic_machine | sed -e 's/mips3/mips64/'`-unknown
emboss-6.6.0+dfsg/config.sub-814- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-827- ms1-*)
emboss-6.6.0+dfsg/config.sub:828: basic_machine=`echo $basic_machine | sed -e 's/ms1-/mt-/'`
emboss-6.6.0+dfsg/config.sub-829- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-946- parisc-*)
emboss-6.6.0+dfsg/config.sub:947: basic_machine=hppa-`echo $basic_machine | sed 's/^[^-]*-//'`
emboss-6.6.0+dfsg/config.sub-948- os=-linux
##############################################
emboss-6.6.0+dfsg/config.sub-962- pc98-*)
emboss-6.6.0+dfsg/config.sub:963: basic_machine=i386-`echo $basic_machine | sed 's/^[^-]*-//'`
emboss-6.6.0+dfsg/config.sub-964- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-977- pentium-* | p5-* | k5-* | k6-* | nexgen-* | viac3-*)
emboss-6.6.0+dfsg/config.sub:978: basic_machine=i586-`echo $basic_machine | sed 's/^[^-]*-//'`
emboss-6.6.0+dfsg/config.sub-979- ;;
emboss-6.6.0+dfsg/config.sub-980- pentiumpro-* | p6-* | 6x86-* | athlon-*)
emboss-6.6.0+dfsg/config.sub:981: basic_machine=i686-`echo $basic_machine | sed 's/^[^-]*-//'`
emboss-6.6.0+dfsg/config.sub-982- ;;
emboss-6.6.0+dfsg/config.sub-983- pentiumii-* | pentium2-* | pentiumiii-* | pentium3-*)
emboss-6.6.0+dfsg/config.sub:984: basic_machine=i686-`echo $basic_machine | sed 's/^[^-]*-//'`
emboss-6.6.0+dfsg/config.sub-985- ;;
emboss-6.6.0+dfsg/config.sub-986- pentium4-*)
emboss-6.6.0+dfsg/config.sub:987: basic_machine=i786-`echo $basic_machine | sed 's/^[^-]*-//'`
emboss-6.6.0+dfsg/config.sub-988- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-996- ppc-* | ppcbe-*)
emboss-6.6.0+dfsg/config.sub:997: basic_machine=powerpc-`echo $basic_machine | sed 's/^[^-]*-//'`
emboss-6.6.0+dfsg/config.sub-998- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-1002- ppcle-* | powerpclittle-*)
emboss-6.6.0+dfsg/config.sub:1003: basic_machine=powerpcle-`echo $basic_machine | sed 's/^[^-]*-//'`
emboss-6.6.0+dfsg/config.sub-1004- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-1006- ;;
emboss-6.6.0+dfsg/config.sub:1007: ppc64-*) basic_machine=powerpc64-`echo $basic_machine | sed 's/^[^-]*-//'`
emboss-6.6.0+dfsg/config.sub-1008- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-1012- ppc64le-* | powerpc64little-*)
emboss-6.6.0+dfsg/config.sub:1013: basic_machine=powerpc64le-`echo $basic_machine | sed 's/^[^-]*-//'`
emboss-6.6.0+dfsg/config.sub-1014- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-1091- strongarm-* | thumb-*)
emboss-6.6.0+dfsg/config.sub:1092: basic_machine=arm-`echo $basic_machine | sed 's/^[^-]*-//'`
emboss-6.6.0+dfsg/config.sub-1093- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-1221- xscale-* | xscalee[bl]-*)
emboss-6.6.0+dfsg/config.sub:1222: basic_machine=`echo $basic_machine | sed 's/^xscale/arm/'`
emboss-6.6.0+dfsg/config.sub-1223- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-1298- *)
emboss-6.6.0+dfsg/config.sub:1299: echo Invalid configuration \`$1\': machine \`$basic_machine\' not recognized 1>&2
emboss-6.6.0+dfsg/config.sub-1300- exit 1
##############################################
emboss-6.6.0+dfsg/config.sub-1306- *-digital*)
emboss-6.6.0+dfsg/config.sub:1307: basic_machine=`echo $basic_machine | sed 's/digital.*/dec/'`
emboss-6.6.0+dfsg/config.sub-1308- ;;
emboss-6.6.0+dfsg/config.sub-1309- *-commodore*)
emboss-6.6.0+dfsg/config.sub:1310: basic_machine=`echo $basic_machine | sed 's/commodore.*/cbm/'`
emboss-6.6.0+dfsg/config.sub-1311- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-1327- -solaris1 | -solaris1.*)
emboss-6.6.0+dfsg/config.sub:1328: os=`echo $os | sed -e 's|solaris1|sunos4|'`
emboss-6.6.0+dfsg/config.sub-1329- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-1339- -gnu/linux*)
emboss-6.6.0+dfsg/config.sub:1340: os=`echo $os | sed -e 's|gnu/linux|linux-gnu|'`
emboss-6.6.0+dfsg/config.sub-1341- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-1385- -nto*)
emboss-6.6.0+dfsg/config.sub:1386: os=`echo $os | sed -e 's|nto|nto-qnx|'`
emboss-6.6.0+dfsg/config.sub-1387- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-1392- -mac*)
emboss-6.6.0+dfsg/config.sub:1393: os=`echo $os | sed -e 's|mac|macos|'`
emboss-6.6.0+dfsg/config.sub-1394- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-1398- -linux*)
emboss-6.6.0+dfsg/config.sub:1399: os=`echo $os | sed -e 's|linux|linux-gnu|'`
emboss-6.6.0+dfsg/config.sub-1400- ;;
emboss-6.6.0+dfsg/config.sub-1401- -sunos5*)
emboss-6.6.0+dfsg/config.sub:1402: os=`echo $os | sed -e 's|sunos5|solaris2|'`
emboss-6.6.0+dfsg/config.sub-1403- ;;
emboss-6.6.0+dfsg/config.sub-1404- -sunos6*)
emboss-6.6.0+dfsg/config.sub:1405: os=`echo $os | sed -e 's|sunos6|solaris3|'`
emboss-6.6.0+dfsg/config.sub-1406- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-1453- -sinix5.*)
emboss-6.6.0+dfsg/config.sub:1454: os=`echo $os | sed -e 's|sinix|sysv|'`
emboss-6.6.0+dfsg/config.sub-1455- ;;
##############################################
emboss-6.6.0+dfsg/config.sub-1509- # Get rid of the `-' at the beginning of $os.
emboss-6.6.0+dfsg/config.sub:1510: os=`echo $os | sed 's/[^-]*-//'`
emboss-6.6.0+dfsg/config.sub:1511: echo Invalid configuration \`$1\': system \`$os\' not recognized 1>&2
emboss-6.6.0+dfsg/config.sub-1512- exit 1
##############################################
emboss-6.6.0+dfsg/config.sub-1769- esac
emboss-6.6.0+dfsg/config.sub:1770: basic_machine=`echo $basic_machine | sed "s/unknown/$vendor/"`
emboss-6.6.0+dfsg/config.sub-1771- ;;
##############################################
emboss-6.6.0+dfsg/ltmain.sh-167-{
emboss-6.6.0+dfsg/ltmain.sh:168: func_dirname_result=`$ECHO "${1}" | $SED "$dirname"`
emboss-6.6.0+dfsg/ltmain.sh-169- if test "X$func_dirname_result" = "X${1}"; then
##############################################
emboss-6.6.0+dfsg/ltmain.sh-179-{
emboss-6.6.0+dfsg/ltmain.sh:180: func_basename_result=`$ECHO "${1}" | $SED "$basename"`
emboss-6.6.0+dfsg/ltmain.sh-181-} # func_basename may be replaced by extended shell implementation
##############################################
emboss-6.6.0+dfsg/ltmain.sh-198- # Extract subdirectory from the argument.
emboss-6.6.0+dfsg/ltmain.sh:199: func_dirname_result=`$ECHO "${1}" | $SED -e "$dirname"`
emboss-6.6.0+dfsg/ltmain.sh-200- if test "X$func_dirname_result" = "X${1}"; then
##############################################
emboss-6.6.0+dfsg/ltmain.sh-204- fi
emboss-6.6.0+dfsg/ltmain.sh:205: func_basename_result=`$ECHO "${1}" | $SED -e "$basename"`
emboss-6.6.0+dfsg/ltmain.sh-206-} # func_dirname_and_basename may be replaced by extended shell implementation
##############################################
emboss-6.6.0+dfsg/ltmain.sh-217- case ${2} in
emboss-6.6.0+dfsg/ltmain.sh:218: .*) func_stripname_result=`$ECHO "${3}" | $SED "s%^${1}%%; s%\\\\${2}\$%%"`;;
emboss-6.6.0+dfsg/ltmain.sh:219: *) func_stripname_result=`$ECHO "${3}" | $SED "s%^${1}%%; s%${2}\$%%"`;;
emboss-6.6.0+dfsg/ltmain.sh-220- esac
##############################################
emboss-6.6.0+dfsg/ltmain.sh-380- progdir=$func_dirname_result
emboss-6.6.0+dfsg/ltmain.sh:381: progdir=`cd "$progdir" && pwd`
emboss-6.6.0+dfsg/ltmain.sh-382- progpath="$progdir/$progname"
##############################################
emboss-6.6.0+dfsg/ltmain.sh-417-# Since each input `\' is now two `\'s, look for any number of runs of
emboss-6.6.0+dfsg/ltmain.sh:418:# four `\'s followed by two `\'s and then a '$'. `\' that '$'.
emboss-6.6.0+dfsg/ltmain.sh-419-bs='\\'
##############################################
emboss-6.6.0+dfsg/ltmain.sh-531- # ...otherwise throw away the child directory and loop
emboss-6.6.0+dfsg/ltmain.sh:532: my_directory_path=`$ECHO "$my_directory_path" | $SED -e "$dirname"`
emboss-6.6.0+dfsg/ltmain.sh-533- done
emboss-6.6.0+dfsg/ltmain.sh:534: my_dir_list=`$ECHO "$my_dir_list" | $SED 's,:*$,,'`
emboss-6.6.0+dfsg/ltmain.sh-535-
##############################################
emboss-6.6.0+dfsg/ltmain.sh-566- # If mktemp works, use that first and foremost
emboss-6.6.0+dfsg/ltmain.sh:567: my_tmpdir=`mktemp -d "${my_template}-XXXXXXXX" 2>/dev/null`
emboss-6.6.0+dfsg/ltmain.sh-568-
##############################################
emboss-6.6.0+dfsg/ltmain.sh-597- *[\\\`\"\$]*)
emboss-6.6.0+dfsg/ltmain.sh:598: func_quote_for_eval_unquoted_result=`$ECHO "$1" | $SED "$sed_quote_subst"` ;;
emboss-6.6.0+dfsg/ltmain.sh-599- *)
##############################################
emboss-6.6.0+dfsg/ltmain.sh-702- [0-9]* | *[!a-zA-Z0-9_]*)
emboss-6.6.0+dfsg/ltmain.sh:703: func_tr_sh_result=`$ECHO "$1" | $SED 's/^\([0-9]\)/_\1/; s/[^a-zA-Z0-9_]/_/g'`
emboss-6.6.0+dfsg/ltmain.sh-704- ;;
##############################################
emboss-6.6.0+dfsg/ltmain.sh-769- s/\$with_gnu_ld/'"$with_gnu_ld"'/
emboss-6.6.0+dfsg/ltmain.sh:770: s/\$automake_version/'"`(${AUTOMAKE-automake} --version) 2>/dev/null |$SED 1q`"'/
emboss-6.6.0+dfsg/ltmain.sh:771: s/\$autoconf_version/'"`(${AUTOCONF-autoconf} --version) 2>/dev/null |$SED 1q`"'/
emboss-6.6.0+dfsg/ltmain.sh-772- p
##############################################
emboss-6.6.0+dfsg/ltmain.sh-803-
emboss-6.6.0+dfsg/ltmain.sh:804: func_split_short_opt_name=`$ECHO "$1" | $SED "$my_sed_short_opt"`
emboss-6.6.0+dfsg/ltmain.sh:805: func_split_short_opt_arg=`$ECHO "$1" | $SED "$my_sed_short_rest"`
emboss-6.6.0+dfsg/ltmain.sh-806-} # func_split_short_opt may be replaced by extended shell implementation
##############################################
emboss-6.6.0+dfsg/ltmain.sh-816-
emboss-6.6.0+dfsg/ltmain.sh:817: func_split_long_opt_name=`$ECHO "$1" | $SED "$my_sed_long_opt"`
emboss-6.6.0+dfsg/ltmain.sh:818: func_split_long_opt_arg=`$ECHO "$1" | $SED "$my_sed_long_arg"`
emboss-6.6.0+dfsg/ltmain.sh-819-} # func_split_long_opt may be replaced by extended shell implementation
##############################################
emboss-6.6.0+dfsg/ltmain.sh-862-{
emboss-6.6.0+dfsg/ltmain.sh:863: func_arith_result=`expr "${@}"`
emboss-6.6.0+dfsg/ltmain.sh-864-} # func_arith may be replaced by extended shell implementation
##############################################
emboss-6.6.0+dfsg/ltmain.sh-870-{
emboss-6.6.0+dfsg/ltmain.sh:871: func_len_result=`expr "${1}" : ".*" 2>/dev/null || echo $max_cmd_len`
emboss-6.6.0+dfsg/ltmain.sh-872-} # func_len may be replaced by extended shell implementation
##############################################
emboss-6.6.0+dfsg/ltmain.sh-877-{
emboss-6.6.0+dfsg/ltmain.sh:878: func_lo2o_result=`$ECHO "${1}" | $SED "$lo2o"`
emboss-6.6.0+dfsg/ltmain.sh-879-} # func_lo2o may be replaced by extended shell implementation
##############################################
emboss-6.6.0+dfsg/ltmain.sh-884-{
emboss-6.6.0+dfsg/ltmain.sh:885: func_xform_result=`$ECHO "${1}" | $SED 's/\.[^.]*$/.lo/'`
emboss-6.6.0+dfsg/ltmain.sh-886-} # func_xform may be replaced by extended shell implementation
##############################################
emboss-6.6.0+dfsg/ltmain.sh-968- # quotes we have to do it in 2 steps:
emboss-6.6.0+dfsg/ltmain.sh:969: extractedcf=`$SED -n -e "$sed_extractcf" < "$progpath"`
emboss-6.6.0+dfsg/ltmain.sh-970- eval "$extractedcf"
##############################################
emboss-6.6.0+dfsg/ltmain.sh-1382- done
emboss-6.6.0+dfsg/ltmain.sh:1383: CC_expanded=`func_echo_all $CC`
emboss-6.6.0+dfsg/ltmain.sh:1384: CC_quoted_expanded=`func_echo_all $CC_quoted`
emboss-6.6.0+dfsg/ltmain.sh-1385- case $@ in
##############################################
emboss-6.6.0+dfsg/ltmain.sh-1395- # Evaluate the configuration.
emboss-6.6.0+dfsg/ltmain.sh:1396: eval "`${SED} -n -e '/^# ### BEGIN LIBTOOL TAG CONFIG: '$z'$/,/^# ### END LIBTOOL TAG CONFIG: '$z'$/p' < $progpath`"
emboss-6.6.0+dfsg/ltmain.sh-1397- CC_quoted=
##############################################
emboss-6.6.0+dfsg/ltmain.sh-1401- done
emboss-6.6.0+dfsg/ltmain.sh:1402: CC_expanded=`func_echo_all $CC`
emboss-6.6.0+dfsg/ltmain.sh:1403: CC_quoted_expanded=`func_echo_all $CC_quoted`
emboss-6.6.0+dfsg/ltmain.sh-1404- case "$@ " in
##############################################
emboss-6.6.0+dfsg/ltmain.sh-1492- # zero AND non-empty stdout, which explains the odd construction:
emboss-6.6.0+dfsg/ltmain.sh:1493: func_convert_core_file_wine_to_w32_tmp=`winepath -w "$1" 2>/dev/null`
emboss-6.6.0+dfsg/ltmain.sh-1494- if test "$?" -eq 0 && test -n "${func_convert_core_file_wine_to_w32_tmp}"; then
##############################################
emboss-6.6.0+dfsg/ltmain.sh-1558- if test -n "$LT_CYGPATH" && test -f "$LT_CYGPATH"; then
emboss-6.6.0+dfsg/ltmain.sh:1559: func_cygpath_result=`$LT_CYGPATH "$@" 2>/dev/null`
emboss-6.6.0+dfsg/ltmain.sh-1560- if test "$?" -ne 0; then
##############################################
emboss-6.6.0+dfsg/ltmain.sh-1721- # LT_CYGPATH in this case.
emboss-6.6.0+dfsg/ltmain.sh:1722: func_to_host_file_result=`cygpath -m "$1"`
emboss-6.6.0+dfsg/ltmain.sh-1723- fi
##############################################
emboss-6.6.0+dfsg/ltmain.sh-1871- func_to_host_path_tmp1=$func_stripname_result
emboss-6.6.0+dfsg/ltmain.sh:1872: func_to_host_path_result=`cygpath -m -p "$func_to_host_path_tmp1"`
emboss-6.6.0+dfsg/ltmain.sh-1873- func_convert_path_check : ";" \
##############################################
emboss-6.6.0+dfsg/ltmain.sh-2060- *.[cCFSifmso] | \
emboss-6.6.0+dfsg/ltmain.sh:2061: *.ada | *.adb | *.ads | *.asm | \
emboss-6.6.0+dfsg/ltmain.sh-2062- *.c++ | *.cc | *.ii | *.class | *.cpp | *.cxx | \
##############################################
emboss-6.6.0+dfsg/ltmain.sh-2137- if test "$compiler_c_o" = no; then
emboss-6.6.0+dfsg/ltmain.sh:2138: output_obj=`$ECHO "$srcfile" | $SED 's%^.*/%%; s%\.[^.]*$%%'`.${objext}
emboss-6.6.0+dfsg/ltmain.sh-2139- lockfile="$output_obj.lock"
##############################################
emboss-6.6.0+dfsg/ltmain.sh-2156-*** ERROR, $lockfile exists and contains:
emboss-6.6.0+dfsg/ltmain.sh:2157:`cat $lockfile 2>/dev/null`
emboss-6.6.0+dfsg/ltmain.sh-2158-
##############################################
emboss-6.6.0+dfsg/ltmain.sh-2204- if test "$need_locks" = warn &&
emboss-6.6.0+dfsg/ltmain.sh:2205: test "X`cat $lockfile 2>/dev/null`" != "X$srcfile"; then
emboss-6.6.0+dfsg/ltmain.sh-2206- $ECHO "\
emboss-6.6.0+dfsg/ltmain.sh-2207-*** ERROR, $lockfile contains:
emboss-6.6.0+dfsg/ltmain.sh:2208:`cat $lockfile 2>/dev/null`
emboss-6.6.0+dfsg/ltmain.sh-2209-
##############################################
emboss-6.6.0+dfsg/ltmain.sh-2253- if test "$need_locks" = warn &&
emboss-6.6.0+dfsg/ltmain.sh:2254: test "X`cat $lockfile 2>/dev/null`" != "X$srcfile"; then
emboss-6.6.0+dfsg/ltmain.sh-2255- $ECHO "\
emboss-6.6.0+dfsg/ltmain.sh-2256-*** ERROR, $lockfile contains:
emboss-6.6.0+dfsg/ltmain.sh:2257:`cat $lockfile 2>/dev/null`
emboss-6.6.0+dfsg/ltmain.sh-2258-
##############################################
emboss-6.6.0+dfsg/ltmain.sh-2548- test -n "$library_names" && \
emboss-6.6.0+dfsg/ltmain.sh:2549: func_warning "\`$file' was not linked with \`-export-dynamic'"
emboss-6.6.0+dfsg/ltmain.sh-2550- continue
##############################################
emboss-6.6.0+dfsg/ltmain.sh-2559- if test ! -f "$dir/$dlname"; then
emboss-6.6.0+dfsg/ltmain.sh:2560: func_fatal_error "cannot find \`$dlname' in \`$dir' or \`$dir/$objdir'"
emboss-6.6.0+dfsg/ltmain.sh-2561- fi
##############################################
emboss-6.6.0+dfsg/ltmain.sh-2577- # Get the absolute pathname.
emboss-6.6.0+dfsg/ltmain.sh:2578: absdir=`cd "$dir" && pwd`
emboss-6.6.0+dfsg/ltmain.sh-2579- test -n "$absdir" && dir="$absdir"
##############################################
emboss-6.6.0+dfsg/ltmain.sh-2675- if test -n "$lt_sysroot"; then
emboss-6.6.0+dfsg/ltmain.sh:2676: sysroot_regex=`$ECHO "$lt_sysroot" | $SED "$sed_make_literal_regex"`
emboss-6.6.0+dfsg/ltmain.sh-2677- sysroot_cmd="s/\([ ']\)$sysroot_regex/\1/g;"
##############################################
emboss-6.6.0+dfsg/ltmain.sh-2957- # Determine the prefix the user has applied to our future dir.
emboss-6.6.0+dfsg/ltmain.sh:2958: inst_prefix_dir=`$ECHO "$destdir" | $SED -e "s%$libdir\$%%"`
emboss-6.6.0+dfsg/ltmain.sh-2959-
##############################################
emboss-6.6.0+dfsg/ltmain.sh-2970- # Stick the inst_prefix_dir data into the link command.
emboss-6.6.0+dfsg/ltmain.sh:2971: relink_command=`$ECHO "$relink_command" | $SED "s%@inst_prefix_dir@%-inst-prefix-dir $inst_prefix_dir%"`
emboss-6.6.0+dfsg/ltmain.sh-2972- else
emboss-6.6.0+dfsg/ltmain.sh:2973: relink_command=`$ECHO "$relink_command" | $SED "s%@inst_prefix_dir@%%"`
emboss-6.6.0+dfsg/ltmain.sh-2974- fi
##############################################
emboss-6.6.0+dfsg/ltmain.sh-3130- fi
emboss-6.6.0+dfsg/ltmain.sh:3131: libfile="$libdir/"`$ECHO "$lib" | $SED 's%^.*/%%g'` ### testsuite: skip nested quoting test
emboss-6.6.0+dfsg/ltmain.sh-3132- if test -n "$libdir" && test ! -f "$libfile"; then
emboss-6.6.0+dfsg/ltmain.sh:3133: func_warning "\`$lib' has not been installed in \`$libdir'"
emboss-6.6.0+dfsg/ltmain.sh-3134- finalize=no
##############################################
emboss-6.6.0+dfsg/ltmain.sh-3149- # Replace the output file specification.
emboss-6.6.0+dfsg/ltmain.sh:3150: relink_command=`$ECHO "$relink_command" | $SED 's%@OUTPUT@%'"$outputname"'%g'`
emboss-6.6.0+dfsg/ltmain.sh-3151-
##############################################
emboss-6.6.0+dfsg/ltmain.sh-3168- # Install the binary that we compiled earlier.
emboss-6.6.0+dfsg/ltmain.sh:3169: file=`$ECHO "$file$stripped_ext" | $SED "s%\([^/]*\)$%$objdir/\1%"`
emboss-6.6.0+dfsg/ltmain.sh-3170- fi
##############################################
emboss-6.6.0+dfsg/ltmain.sh-3241- my_pic_p="${3-no}"
emboss-6.6.0+dfsg/ltmain.sh:3242: my_prefix=`$ECHO "$my_originator" | sed 's%[^a-zA-Z0-9]%_%g'`
emboss-6.6.0+dfsg/ltmain.sh-3243- my_dlsyms=
##############################################
emboss-6.6.0+dfsg/ltmain.sh-3297- # Add our own program objects to the symbol list.
emboss-6.6.0+dfsg/ltmain.sh:3298: progfiles=`$ECHO "$objs$old_deplibs" | $SP2NL | $SED "$lo2o" | $NL2SP`
emboss-6.6.0+dfsg/ltmain.sh-3299- for progfile in $progfiles; do
##############################################
emboss-6.6.0+dfsg/ltmain.sh-3359- # Use subshell, to avoid clobbering current variable values
emboss-6.6.0+dfsg/ltmain.sh:3360: dlprefile_dlname=`source "$curr_lafile" && echo "$dlname"`
emboss-6.6.0+dfsg/ltmain.sh-3361- if test -n "$dlprefile_dlname" ; then
##############################################
emboss-6.6.0+dfsg/ltmain.sh-3506- if test -f "$output_objdir/$my_outputname.def"; then
emboss-6.6.0+dfsg/ltmain.sh:3507: compile_command=`$ECHO "$compile_command" | $SED "s%@SYMFILE@%$output_objdir/$my_outputname.def $symfileobj%"`
emboss-6.6.0+dfsg/ltmain.sh:3508: finalize_command=`$ECHO "$finalize_command" | $SED "s%@SYMFILE@%$output_objdir/$my_outputname.def $symfileobj%"`
emboss-6.6.0+dfsg/ltmain.sh-3509- else
emboss-6.6.0+dfsg/ltmain.sh:3510: compile_command=`$ECHO "$compile_command" | $SED "s%@SYMFILE@%$symfileobj%"`
emboss-6.6.0+dfsg/ltmain.sh:3511: finalize_command=`$ECHO "$finalize_command" | $SED "s%@SYMFILE@%$symfileobj%"`
emboss-6.6.0+dfsg/ltmain.sh-3512- fi
##############################################
emboss-6.6.0+dfsg/ltmain.sh-3514- *)
emboss-6.6.0+dfsg/ltmain.sh:3515: compile_command=`$ECHO "$compile_command" | $SED "s%@SYMFILE@%$symfileobj%"`
emboss-6.6.0+dfsg/ltmain.sh:3516: finalize_command=`$ECHO "$finalize_command" | $SED "s%@SYMFILE@%$symfileobj%"`
emboss-6.6.0+dfsg/ltmain.sh-3517- ;;
##############################################
emboss-6.6.0+dfsg/ltmain.sh-3529- # Nullify the symbol file.
emboss-6.6.0+dfsg/ltmain.sh:3530: compile_command=`$ECHO "$compile_command" | $SED "s% @SYMFILE@%%"`
emboss-6.6.0+dfsg/ltmain.sh:3531: finalize_command=`$ECHO "$finalize_command" | $SED "s% @SYMFILE@%%"`
emboss-6.6.0+dfsg/ltmain.sh-3532- fi
##############################################
emboss-6.6.0+dfsg/ltmain.sh-3545- win32_libid_type="unknown"
emboss-6.6.0+dfsg/ltmain.sh:3546: win32_fileres=`file -L $1 2>/dev/null`
emboss-6.6.0+dfsg/ltmain.sh-3547- case $win32_fileres in
##############################################
emboss-6.6.0+dfsg/ltmain.sh-3596- $opt_debug
emboss-6.6.0+dfsg/ltmain.sh:3597: sharedlib_from_linklib_result=`$DLLTOOL --identify-strict --identify "$1"`
emboss-6.6.0+dfsg/ltmain.sh-3598-}
##############################################
emboss-6.6.0+dfsg/ltmain.sh-3613- $opt_debug
emboss-6.6.0+dfsg/ltmain.sh:3614: match_literal=`$ECHO "$1" | $SED "$sed_make_literal_regex"`
emboss-6.6.0+dfsg/ltmain.sh-3615- $OBJDUMP -s --section "$1" "$2" 2>/dev/null |
##############################################
emboss-6.6.0+dfsg/ltmain.sh-3668- func_to_tool_file "$1" func_convert_file_msys_to_w32
emboss-6.6.0+dfsg/ltmain.sh:3669: func_cygming_gnu_implib_tmp=`$NM "$func_to_tool_file_result" | eval "$global_symbol_pipe" | $EGREP ' (_head_[A-Za-z0-9_]+_[ad]l*|[A-Za-z0-9_]+_[ad]l*_iname)$'`
emboss-6.6.0+dfsg/ltmain.sh-3670- test -n "$func_cygming_gnu_implib_tmp"
##############################################
emboss-6.6.0+dfsg/ltmain.sh-3680- func_to_tool_file "$1" func_convert_file_msys_to_w32
emboss-6.6.0+dfsg/ltmain.sh:3681: func_cygming_ms_implib_tmp=`$NM "$func_to_tool_file_result" | eval "$global_symbol_pipe" | $GREP '_NULL_IMPORT_DESCRIPTOR'`
emboss-6.6.0+dfsg/ltmain.sh-3682- test -n "$func_cygming_ms_implib_tmp"
##############################################
emboss-6.6.0+dfsg/ltmain.sh-3700- # binutils import library
emboss-6.6.0+dfsg/ltmain.sh:3701: sharedlib_from_linklib_result=`func_cygming_dll_for_implib_fallback_core '.idata$7' "$1"`
emboss-6.6.0+dfsg/ltmain.sh-3702- elif func_cygming_ms_implib_p "$1" ; then
emboss-6.6.0+dfsg/ltmain.sh-3703- # ms-generated import library
emboss-6.6.0+dfsg/ltmain.sh:3704: sharedlib_from_linklib_result=`func_cygming_dll_for_implib_fallback_core '.idata$6' "$1"`
emboss-6.6.0+dfsg/ltmain.sh-3705- else
##############################################
emboss-6.6.0+dfsg/ltmain.sh-3780- darwin_curdir=`pwd`
emboss-6.6.0+dfsg/ltmain.sh:3781: darwin_base_archive=`basename "$darwin_archive"`
emboss-6.6.0+dfsg/ltmain.sh:3782: darwin_arches=`$LIPO -info "$darwin_archive" 2>/dev/null | $GREP Architectures 2>/dev/null || true`
emboss-6.6.0+dfsg/ltmain.sh-3783- if test -n "$darwin_arches"; then
emboss-6.6.0+dfsg/ltmain.sh:3784: darwin_arches=`$ECHO "$darwin_arches" | $SED -e 's/.*are://'`
emboss-6.6.0+dfsg/ltmain.sh-3785- darwin_arch=
##############################################
emboss-6.6.0+dfsg/ltmain.sh-3795- ## Okay now we've a bunch of thin objects, gotta fatten them up :)
emboss-6.6.0+dfsg/ltmain.sh:3796: darwin_filelist=`find unfat-$$ -type f -name \*.o -print -o -name \*.lo -print | $SED -e "$basename" | sort -u`
emboss-6.6.0+dfsg/ltmain.sh-3797- darwin_file=
##############################################
emboss-6.6.0+dfsg/ltmain.sh-3799- for darwin_file in $darwin_filelist; do
emboss-6.6.0+dfsg/ltmain.sh:3800: darwin_files=`find unfat-$$ -name $darwin_file -print | sort | $NL2SP`
emboss-6.6.0+dfsg/ltmain.sh-3801- $LIPO -create -output "$darwin_file" $darwin_files
##############################################
emboss-6.6.0+dfsg/ltmain.sh-3814- esac
emboss-6.6.0+dfsg/ltmain.sh:3815: my_oldobjs="$my_oldobjs "`find $my_xdir -name \*.$objext -print -o -name \*.lo -print | sort | $NL2SP`
emboss-6.6.0+dfsg/ltmain.sh-3816- done
##############################################
emboss-6.6.0+dfsg/ltmain.sh-3885-
emboss-6.6.0+dfsg/ltmain.sh:3886: qECHO=`$ECHO "$ECHO" | $SED "$sed_quote_subst"`
emboss-6.6.0+dfsg/ltmain.sh-3887- $ECHO "\
##############################################
emboss-6.6.0+dfsg/ltmain.sh-3920- --lt-dump-script)
emboss-6.6.0+dfsg/ltmain.sh:3921: lt_dump_D=\`\$ECHO \"X\$lt_script_arg0\" | $SED -e 's/^X//' -e 's%/[^/]*$%%'\`
emboss-6.6.0+dfsg/ltmain.sh-3922- test \"X\$lt_dump_D\" = \"X\$lt_script_arg0\" && lt_dump_D=.
emboss-6.6.0+dfsg/ltmain.sh:3923: lt_dump_F=\`\$ECHO \"X\$lt_script_arg0\" | $SED -e 's/^X//' -e 's%^.*/%%'\`
emboss-6.6.0+dfsg/ltmain.sh-3924- cat \"\$lt_dump_D/\$lt_dump_F\"
##############################################
emboss-6.6.0+dfsg/ltmain.sh-3947- \$ECHO \"${outputname}:${output}:\${LINENO}: newargv[\$lt_dump_args_N]: \$lt_arg\"
emboss-6.6.0+dfsg/ltmain.sh:3948: lt_dump_args_N=\`expr \$lt_dump_args_N + 1\`
emboss-6.6.0+dfsg/ltmain.sh-3949- done
##############################################
emboss-6.6.0+dfsg/ltmain.sh-4005- # Find the directory that this script lives in.
emboss-6.6.0+dfsg/ltmain.sh:4006: thisdir=\`\$ECHO \"\$file\" | $SED 's%/[^/]*$%%'\`
emboss-6.6.0+dfsg/ltmain.sh-4007- test \"x\$thisdir\" = \"x\$file\" && thisdir=.
##############################################
emboss-6.6.0+dfsg/ltmain.sh-4009- # Follow symbolic links until we get to the real thisdir.
emboss-6.6.0+dfsg/ltmain.sh:4010: file=\`ls -ld \"\$file\" | $SED -n 's/.*-> //p'\`
emboss-6.6.0+dfsg/ltmain.sh-4011- while test -n \"\$file\"; do
emboss-6.6.0+dfsg/ltmain.sh:4012: destdir=\`\$ECHO \"\$file\" | $SED 's%/[^/]*\$%%'\`
emboss-6.6.0+dfsg/ltmain.sh-4013-
##############################################
emboss-6.6.0+dfsg/ltmain.sh-4021-
emboss-6.6.0+dfsg/ltmain.sh:4022: file=\`\$ECHO \"\$file\" | $SED 's%^.*/%%'\`
emboss-6.6.0+dfsg/ltmain.sh:4023: file=\`ls -ld \"\$thisdir/\$file\" | $SED -n 's/.*-> //p'\`
emboss-6.6.0+dfsg/ltmain.sh-4024- done
##############################################
emboss-6.6.0+dfsg/ltmain.sh-4035- case \"\$thisdir\" in
emboss-6.6.0+dfsg/ltmain.sh:4036: *[\\\\/]$objdir ) thisdir=\`\$ECHO \"\$thisdir\" | $SED 's%[\\\\/][^\\\\/]*$%%'\` ;;
emboss-6.6.0+dfsg/ltmain.sh-4037- $objdir ) thisdir=. ;;
##############################################
emboss-6.6.0+dfsg/ltmain.sh-4041- # Try to get the absolute directory name.
emboss-6.6.0+dfsg/ltmain.sh:4042: absdir=\`cd \"\$thisdir\" && pwd\`
emboss-6.6.0+dfsg/ltmain.sh-4043- test -n \"\$absdir\" && thisdir=\"\$absdir\"
##############################################
emboss-6.6.0+dfsg/ltmain.sh-4051- if test ! -f \"\$progdir/\$program\" ||
emboss-6.6.0+dfsg/ltmain.sh:4052: { file=\`ls -1dt \"\$progdir/\$program\" \"\$progdir/../\$program\" 2>/dev/null | ${SED} 1q\`; \\
emboss-6.6.0+dfsg/ltmain.sh-4053- test \"X\$file\" != \"X\$progdir/\$program\"; }; then
##############################################
emboss-6.6.0+dfsg/ltmain.sh-4066- if test -n \"\$relink_command\"; then
emboss-6.6.0+dfsg/ltmain.sh:4067: if relink_command_output=\`eval \$relink_command 2>&1\`; then :
emboss-6.6.0+dfsg/ltmain.sh-4068- else
##############################################
emboss-6.6.0+dfsg/ltmain.sh-4110- # The second colon is a workaround for a bug in BeOS R4 sed
emboss-6.6.0+dfsg/ltmain.sh:4111: $shlibpath_var=\`\$ECHO \"\$$shlibpath_var\" | $SED 's/::*\$//'\`
emboss-6.6.0+dfsg/ltmain.sh-4112-
##############################################
emboss-6.6.0+dfsg/ltmain.sh-5085- $opt_debug
emboss-6.6.0+dfsg/ltmain.sh:5086: case `eval $file_magic_cmd \"\$1\" 2>/dev/null | $SED -e 10q` in
emboss-6.6.0+dfsg/ltmain.sh-5087- *import*) : ;;
##############################################
emboss-6.6.0+dfsg/ltmain.sh-5307- moreargs=
emboss-6.6.0+dfsg/ltmain.sh:5308: for fil in `cat "$save_arg"`
emboss-6.6.0+dfsg/ltmain.sh-5309- do
##############################################
emboss-6.6.0+dfsg/ltmain.sh-5563- *)
emboss-6.6.0+dfsg/ltmain.sh:5564: absdir=`cd "$dir" && pwd`
emboss-6.6.0+dfsg/ltmain.sh-5565- test -z "$absdir" && \
##############################################
emboss-6.6.0+dfsg/ltmain.sh-5584- *-*-cygwin* | *-*-mingw* | *-*-pw32* | *-*-os2* | *-cegcc*)
emboss-6.6.0+dfsg/ltmain.sh:5585: testbindir=`$ECHO "$dir" | $SED 's*/lib$*/bin*'`
emboss-6.6.0+dfsg/ltmain.sh-5586- case :$dllsearchpath: in
##############################################
emboss-6.6.0+dfsg/ltmain.sh-6016- # get the directories listed in $shlibpath_var
emboss-6.6.0+dfsg/ltmain.sh:6017: eval shlib_search_path=\`\$ECHO \"\${$shlibpath_var}\" \| \$SED \'s/:/ /g\'\`
emboss-6.6.0+dfsg/ltmain.sh-6018- else
##############################################
emboss-6.6.0+dfsg/ltmain.sh-6328- set dummy $deplibs_check_method; shift
emboss-6.6.0+dfsg/ltmain.sh:6329: match_pattern_regex=`expr "$deplibs_check_method" : "$1 \(.*\)"`
emboss-6.6.0+dfsg/ltmain.sh-6330- if eval "\$ECHO \"$deplib\"" 2>/dev/null | $SED 10q \
##############################################
emboss-6.6.0+dfsg/ltmain.sh-6391- else
emboss-6.6.0+dfsg/ltmain.sh:6392: func_fatal_error "cannot find the library \`$lib' or unhandled argument \`$deplib'"
emboss-6.6.0+dfsg/ltmain.sh-6393- fi
##############################################
emboss-6.6.0+dfsg/ltmain.sh-6420- if test -n "$inherited_linker_flags"; then
emboss-6.6.0+dfsg/ltmain.sh:6421: tmp_inherited_linker_flags=`$ECHO "$inherited_linker_flags" | $SED 's/-framework \([^ $]*\)/\1.ltframework/g'`
emboss-6.6.0+dfsg/ltmain.sh-6422- for tmp_inherited_linker_flag in $tmp_inherited_linker_flags; do
##############################################
emboss-6.6.0+dfsg/ltmain.sh-6428- fi
emboss-6.6.0+dfsg/ltmain.sh:6429: dependency_libs=`$ECHO " $dependency_libs" | $SED 's% \([^ $]*\).ltframework% -framework \1%g'`
emboss-6.6.0+dfsg/ltmain.sh-6430- if test "$linkmode,$pass" = "lib,link" ||
##############################################
emboss-6.6.0+dfsg/ltmain.sh-6501- *)
emboss-6.6.0+dfsg/ltmain.sh:6502: abs_ladir=`cd "$ladir" && pwd`
emboss-6.6.0+dfsg/ltmain.sh-6503- if test -z "$abs_ladir"; then
##############################################
emboss-6.6.0+dfsg/ltmain.sh-6754- shift
emboss-6.6.0+dfsg/ltmain.sh:6755: libname=`eval "\\$ECHO \"$libname_spec\""`
emboss-6.6.0+dfsg/ltmain.sh-6756- # use dlname if we got it. it's perfectly good, no?
##############################################
emboss-6.6.0+dfsg/ltmain.sh-7046- *)
emboss-6.6.0+dfsg/ltmain.sh:7047: absdir=`cd "$dir" && pwd`
emboss-6.6.0+dfsg/ltmain.sh-7048- if test -z "$absdir"; then
##############################################
emboss-6.6.0+dfsg/ltmain.sh-7057- depdepl=
emboss-6.6.0+dfsg/ltmain.sh:7058: eval deplibrary_names=`${SED} -n -e 's/^library_names=\(.*\)$/\1/p' $deplib`
emboss-6.6.0+dfsg/ltmain.sh-7059- if test -n "$deplibrary_names" ; then
##############################################
emboss-6.6.0+dfsg/ltmain.sh-7064- depdepl="$absdir/$objdir/$depdepl"
emboss-6.6.0+dfsg/ltmain.sh:7065: darwin_install_name=`${OTOOL} -L $depdepl | awk '{if (NR == 2) {print $1;exit}}'`
emboss-6.6.0+dfsg/ltmain.sh-7066- if test -z "$darwin_install_name"; then
emboss-6.6.0+dfsg/ltmain.sh:7067: darwin_install_name=`${OTOOL64} -L $depdepl | awk '{if (NR == 2) {print $1;exit}}'`
emboss-6.6.0+dfsg/ltmain.sh-7068- fi
##############################################
emboss-6.6.0+dfsg/ltmain.sh-7079- else
emboss-6.6.0+dfsg/ltmain.sh:7080: eval libdir=`${SED} -n -e 's/^libdir=\(.*\)$/\1/p' $deplib`
emboss-6.6.0+dfsg/ltmain.sh-7081- test -z "$libdir" && \
##############################################
emboss-6.6.0+dfsg/ltmain.sh-7102- else
emboss-6.6.0+dfsg/ltmain.sh:7103: compiler_flags="$compiler_flags "`$ECHO " $new_inherited_linker_flags" | $SED 's% \([^ $]*\).ltframework% -framework \1%g'`
emboss-6.6.0+dfsg/ltmain.sh-7104- fi
##############################################
emboss-6.6.0+dfsg/ltmain.sh-7251- test "$module" = no && \
emboss-6.6.0+dfsg/ltmain.sh:7252: func_fatal_help "libtool library \`$output' must begin with \`lib'"
emboss-6.6.0+dfsg/ltmain.sh-7253-
##############################################
emboss-6.6.0+dfsg/ltmain.sh-7386- if test "$age" -gt "$current"; then
emboss-6.6.0+dfsg/ltmain.sh:7387: func_error "AGE \`$age' is greater than the current interface number \`$current'"
emboss-6.6.0+dfsg/ltmain.sh-7388- func_fatal_error "\`$vinfo' is not valid version information"
##############################################
emboss-6.6.0+dfsg/ltmain.sh-7547- removelist=
emboss-6.6.0+dfsg/ltmain.sh:7548: tempremovelist=`$ECHO "$output_objdir/*"`
emboss-6.6.0+dfsg/ltmain.sh-7549- for p in $tempremovelist; do
##############################################
emboss-6.6.0+dfsg/ltmain.sh-7573- # Transform .lo files to .o files.
emboss-6.6.0+dfsg/ltmain.sh:7574: oldobjs="$objs "`$ECHO "$libobjs" | $SP2NL | $SED "/\.${libext}$/d; $lo2o" | $NL2SP`
emboss-6.6.0+dfsg/ltmain.sh-7575- fi
##############################################
emboss-6.6.0+dfsg/ltmain.sh-7578- #for path in $notinst_path; do
emboss-6.6.0+dfsg/ltmain.sh:7579: # lib_search_path=`$ECHO "$lib_search_path " | $SED "s% $path % %g"`
emboss-6.6.0+dfsg/ltmain.sh:7580: # deplibs=`$ECHO "$deplibs " | $SED "s% -L$path % %g"`
emboss-6.6.0+dfsg/ltmain.sh:7581: # dependency_libs=`$ECHO "$dependency_libs " | $SED "s% -L$path % %g"`
emboss-6.6.0+dfsg/ltmain.sh-7582- #done
##############################################
emboss-6.6.0+dfsg/ltmain.sh-7699- if test -n "$i" ; then
emboss-6.6.0+dfsg/ltmain.sh:7700: libname=`eval "\\$ECHO \"$libname_spec\""`
emboss-6.6.0+dfsg/ltmain.sh:7701: deplib_matches=`eval "\\$ECHO \"$library_names_spec\""`
emboss-6.6.0+dfsg/ltmain.sh-7702- set dummy $deplib_matches; shift
emboss-6.6.0+dfsg/ltmain.sh-7703- deplib_match=$1
emboss-6.6.0+dfsg/ltmain.sh:7704: if test `expr "$ldd_output" : ".*$deplib_match"` -ne 0 ; then
emboss-6.6.0+dfsg/ltmain.sh-7705- func_append newdeplibs " $i"
##############################################
emboss-6.6.0+dfsg/ltmain.sh-7742- if test -n "$i" ; then
emboss-6.6.0+dfsg/ltmain.sh:7743: libname=`eval "\\$ECHO \"$libname_spec\""`
emboss-6.6.0+dfsg/ltmain.sh:7744: deplib_matches=`eval "\\$ECHO \"$library_names_spec\""`
emboss-6.6.0+dfsg/ltmain.sh-7745- set dummy $deplib_matches; shift
emboss-6.6.0+dfsg/ltmain.sh-7746- deplib_match=$1
emboss-6.6.0+dfsg/ltmain.sh:7747: if test `expr "$ldd_output" : ".*$deplib_match"` -ne 0 ; then
emboss-6.6.0+dfsg/ltmain.sh-7748- func_append newdeplibs " $i"
##############################################
emboss-6.6.0+dfsg/ltmain.sh-7777- set dummy $deplibs_check_method; shift
emboss-6.6.0+dfsg/ltmain.sh:7778: file_magic_regex=`expr "$deplibs_check_method" : "$1 \(.*\)"`
emboss-6.6.0+dfsg/ltmain.sh-7779- for a_deplib in $deplibs; do
##############################################
emboss-6.6.0+dfsg/ltmain.sh-7792- if test -n "$a_deplib" ; then
emboss-6.6.0+dfsg/ltmain.sh:7793: libname=`eval "\\$ECHO \"$libname_spec\""`
emboss-6.6.0+dfsg/ltmain.sh-7794- if test -n "$file_magic_glob"; then
emboss-6.6.0+dfsg/ltmain.sh:7795: libnameglob=`func_echo_all "$libname" | $SED -e $file_magic_glob`
emboss-6.6.0+dfsg/ltmain.sh-7796- else
##############################################
emboss-6.6.0+dfsg/ltmain.sh-7802- shopt -s nocaseglob
emboss-6.6.0+dfsg/ltmain.sh:7803: potential_libs=`ls $i/$libnameglob[.-]* 2>/dev/null`
emboss-6.6.0+dfsg/ltmain.sh-7804- $nocaseglob
emboss-6.6.0+dfsg/ltmain.sh-7805- else
emboss-6.6.0+dfsg/ltmain.sh:7806: potential_libs=`ls $i/$libnameglob[.-]* 2>/dev/null`
emboss-6.6.0+dfsg/ltmain.sh-7807- fi
##############################################
emboss-6.6.0+dfsg/ltmain.sh-7820- while test -h "$potlib" 2>/dev/null; do
emboss-6.6.0+dfsg/ltmain.sh:7821: potliblink=`ls -ld $potlib | ${SED} 's/.* -> //'`
emboss-6.6.0+dfsg/ltmain.sh-7822- case $potliblink in
emboss-6.6.0+dfsg/ltmain.sh-7823- [\\/]* | [A-Za-z]:[\\/]*) potlib="$potliblink";;
emboss-6.6.0+dfsg/ltmain.sh:7824: *) potlib=`$ECHO "$potlib" | $SED 's,[^/]*$,,'`"$potliblink";;
emboss-6.6.0+dfsg/ltmain.sh-7825- esac
##############################################
emboss-6.6.0+dfsg/ltmain.sh-7861- set dummy $deplibs_check_method; shift
emboss-6.6.0+dfsg/ltmain.sh:7862: match_pattern_regex=`expr "$deplibs_check_method" : "$1 \(.*\)"`
emboss-6.6.0+dfsg/ltmain.sh-7863- for a_deplib in $deplibs; do
##############################################
emboss-6.6.0+dfsg/ltmain.sh-7876- if test -n "$a_deplib" ; then
emboss-6.6.0+dfsg/ltmain.sh:7877: libname=`eval "\\$ECHO \"$libname_spec\""`
emboss-6.6.0+dfsg/ltmain.sh-7878- for i in $lib_search_path $sys_lib_search_path $shlib_search_path; do
emboss-6.6.0+dfsg/ltmain.sh:7879: potential_libs=`ls $i/$libname[.-]* 2>/dev/null`
emboss-6.6.0+dfsg/ltmain.sh-7880- for potent_lib in $potential_libs; do
##############################################
emboss-6.6.0+dfsg/ltmain.sh-7915- newdeplibs=""
emboss-6.6.0+dfsg/ltmain.sh:7916: tmp_deplibs=`$ECHO " $deplibs" | $SED 's/ -lc$//; s/ -[LR][^ ]*//g'`
emboss-6.6.0+dfsg/ltmain.sh-7917- if test "X$allow_libtool_libs_with_static_runtimes" = "Xyes" ; then
##############################################
emboss-6.6.0+dfsg/ltmain.sh-7919- # can't use Xsed below, because $i might contain '/'
emboss-6.6.0+dfsg/ltmain.sh:7920: tmp_deplibs=`$ECHO " $tmp_deplibs" | $SED "s,$i,,"`
emboss-6.6.0+dfsg/ltmain.sh-7921- done
##############################################
emboss-6.6.0+dfsg/ltmain.sh-7945- # On Rhapsody replace the C library with the System framework
emboss-6.6.0+dfsg/ltmain.sh:7946: newdeplibs=`$ECHO " $newdeplibs" | $SED 's/ -lc / System.ltframework /'`
emboss-6.6.0+dfsg/ltmain.sh-7947- ;;
##############################################
emboss-6.6.0+dfsg/ltmain.sh-7997- *-*-darwin*)
emboss-6.6.0+dfsg/ltmain.sh:7998: newdeplibs=`$ECHO " $newdeplibs" | $SED 's% \([^ $]*\).ltframework% -framework \1%g'`
emboss-6.6.0+dfsg/ltmain.sh:7999: new_inherited_linker_flags=`$ECHO " $new_inherited_linker_flags" | $SED 's% \([^ $]*\).ltframework% -framework \1%g'`
emboss-6.6.0+dfsg/ltmain.sh:8000: deplibs=`$ECHO " $deplibs" | $SED 's% \([^ $]*\).ltframework% -framework \1%g'`
emboss-6.6.0+dfsg/ltmain.sh-8001- ;;
##############################################
emboss-6.6.0+dfsg/ltmain.sh-8124- # Use standard objects if they are pic
emboss-6.6.0+dfsg/ltmain.sh:8125: test -z "$pic_flag" && libobjs=`$ECHO "$libobjs" | $SP2NL | $SED "$lo2o" | $NL2SP`
emboss-6.6.0+dfsg/ltmain.sh-8126- test "X$libobjs" = "X " && libobjs=
##############################################
emboss-6.6.0+dfsg/ltmain.sh-8139- # exporting using user supplied symfile
emboss-6.6.0+dfsg/ltmain.sh:8140: if test "x`$SED 1q $export_symbols`" != xEXPORTS; then
emboss-6.6.0+dfsg/ltmain.sh-8141- # and it's NOT already a .def file. Must figure out
##############################################
emboss-6.6.0+dfsg/ltmain.sh-8636- eval tmp_whole_archive_flags=\"$whole_archive_flag_spec\"
emboss-6.6.0+dfsg/ltmain.sh:8637: reload_conv_objs=$reload_objs\ `$ECHO "$tmp_whole_archive_flags" | $SED 's|,| |g'`
emboss-6.6.0+dfsg/ltmain.sh-8638- else
##############################################
emboss-6.6.0+dfsg/ltmain.sh-8650- # Create the old-style object.
emboss-6.6.0+dfsg/ltmain.sh:8651: reload_objs="$objs$old_deplibs "`$ECHO "$libobjs" | $SP2NL | $SED "/\.${libext}$/d; /\.lib$/d; $lo2o" | $NL2SP`" $reload_conv_objs" ### testsuite: skip nested quoting test
emboss-6.6.0+dfsg/ltmain.sh-8652-
##############################################
emboss-6.6.0+dfsg/ltmain.sh-8710- # On Rhapsody replace the C library is the System framework
emboss-6.6.0+dfsg/ltmain.sh:8711: compile_deplibs=`$ECHO " $compile_deplibs" | $SED 's/ -lc / System.ltframework /'`
emboss-6.6.0+dfsg/ltmain.sh:8712: finalize_deplibs=`$ECHO " $finalize_deplibs" | $SED 's/ -lc / System.ltframework /'`
emboss-6.6.0+dfsg/ltmain.sh-8713- ;;
##############################################
emboss-6.6.0+dfsg/ltmain.sh-8728- # Time to change all our "foo.ltframework" stuff back to "-framework foo"
emboss-6.6.0+dfsg/ltmain.sh:8729: compile_deplibs=`$ECHO " $compile_deplibs" | $SED 's% \([^ $]*\).ltframework% -framework \1%g'`
emboss-6.6.0+dfsg/ltmain.sh:8730: finalize_deplibs=`$ECHO " $finalize_deplibs" | $SED 's% \([^ $]*\).ltframework% -framework \1%g'`
emboss-6.6.0+dfsg/ltmain.sh-8731- ;;
##############################################
emboss-6.6.0+dfsg/ltmain.sh-8806- *-*-cygwin* | *-*-mingw* | *-*-pw32* | *-*-os2* | *-cegcc*)
emboss-6.6.0+dfsg/ltmain.sh:8807: testbindir=`${ECHO} "$libdir" | ${SED} -e 's*/lib$*/bin*'`
emboss-6.6.0+dfsg/ltmain.sh-8808- case :$dllsearchpath: in
##############################################
emboss-6.6.0+dfsg/ltmain.sh-8866- # Transform all the library objects into standard objects.
emboss-6.6.0+dfsg/ltmain.sh:8867: compile_command=`$ECHO "$compile_command" | $SP2NL | $SED "$lo2o" | $NL2SP`
emboss-6.6.0+dfsg/ltmain.sh:8868: finalize_command=`$ECHO "$finalize_command" | $SP2NL | $SED "$lo2o" | $NL2SP`
emboss-6.6.0+dfsg/ltmain.sh-8869- fi
##############################################
emboss-6.6.0+dfsg/ltmain.sh-8896- # Replace the output file specification.
emboss-6.6.0+dfsg/ltmain.sh:8897: compile_command=`$ECHO "$compile_command" | $SED 's%@OUTPUT@%'"$output"'%g'`
emboss-6.6.0+dfsg/ltmain.sh-8898- link_command="$compile_command$compile_rpath"
##############################################
emboss-6.6.0+dfsg/ltmain.sh-8905- func_to_tool_file "$output"
emboss-6.6.0+dfsg/ltmain.sh:8906: postlink_cmds=`func_echo_all "$postlink_cmds" | $SED -e 's%@OUTPUT@%'"$output"'%g' -e 's%@TOOL_OUTPUT@%'"$func_to_tool_file_result"'%g'`
emboss-6.6.0+dfsg/ltmain.sh-8907- func_execute_cmds "$postlink_cmds" 'exit $?'
##############################################
emboss-6.6.0+dfsg/ltmain.sh-8949- # Replace the output file specification.
emboss-6.6.0+dfsg/ltmain.sh:8950: link_command=`$ECHO "$link_command" | $SED 's%@OUTPUT@%'"$output"'%g'`
emboss-6.6.0+dfsg/ltmain.sh-8951- # Delete the old output file.
##############################################
emboss-6.6.0+dfsg/ltmain.sh-8957- func_to_tool_file "$output"
emboss-6.6.0+dfsg/ltmain.sh:8958: postlink_cmds=`func_echo_all "$postlink_cmds" | $SED -e 's%@OUTPUT@%'"$output"'%g' -e 's%@TOOL_OUTPUT@%'"$func_to_tool_file_result"'%g'`
emboss-6.6.0+dfsg/ltmain.sh-8959- func_execute_cmds "$postlink_cmds" 'exit $?'
##############################################
emboss-6.6.0+dfsg/ltmain.sh-8975- if test "$fast_install" = yes; then
emboss-6.6.0+dfsg/ltmain.sh:8976: relink_command=`$ECHO "$compile_var$compile_command$compile_rpath" | $SED 's%@OUTPUT@%\$progdir/\$file%g'`
emboss-6.6.0+dfsg/ltmain.sh-8977- else
##############################################
emboss-6.6.0+dfsg/ltmain.sh-8987- # Replace the output file specification.
emboss-6.6.0+dfsg/ltmain.sh:8988: link_command=`$ECHO "$link_command" | $SED 's%@OUTPUT@%'"$output_objdir/$outputname"'%g'`
emboss-6.6.0+dfsg/ltmain.sh-8989-
##############################################
emboss-6.6.0+dfsg/ltmain.sh-8996- func_to_tool_file "$output_objdir/$outputname"
emboss-6.6.0+dfsg/ltmain.sh:8997: postlink_cmds=`func_echo_all "$postlink_cmds" | $SED -e 's%@OUTPUT@%'"$output_objdir/$outputname"'%g' -e 's%@TOOL_OUTPUT@%'"$func_to_tool_file_result"'%g'`
emboss-6.6.0+dfsg/ltmain.sh-8998- func_execute_cmds "$postlink_cmds" 'exit $?'
##############################################
emboss-6.6.0+dfsg/ltmain.sh-9017- relink_command="(cd `pwd`; $relink_command)"
emboss-6.6.0+dfsg/ltmain.sh:9018: relink_command=`$ECHO "$relink_command" | $SED "$sed_quote_subst"`
emboss-6.6.0+dfsg/ltmain.sh-9019- fi
##############################################
emboss-6.6.0+dfsg/ltmain.sh-9261- relink_command="(cd `pwd`; $SHELL $progpath $preserve_args --mode=relink $libtool_args @inst_prefix_dir@)"
emboss-6.6.0+dfsg/ltmain.sh:9262: relink_command=`$ECHO "$relink_command" | $SED "$sed_quote_subst"`
emboss-6.6.0+dfsg/ltmain.sh-9263- if test "$hardcode_automatic" = yes ; then
##############################################
emboss-6.6.0+dfsg/ltmain.sh-9282- func_resolve_sysroot "$deplib"
emboss-6.6.0+dfsg/ltmain.sh:9283: eval libdir=`${SED} -n -e 's/^libdir=\(.*\)$/\1/p' $func_resolve_sysroot_result`
emboss-6.6.0+dfsg/ltmain.sh-9284- test -z "$libdir" && \
##############################################
emboss-6.6.0+dfsg/ltmain.sh-9308- name="$func_basename_result"
emboss-6.6.0+dfsg/ltmain.sh:9309: eval libdir=`${SED} -n -e 's/^libdir=\(.*\)$/\1/p' $lib`
emboss-6.6.0+dfsg/ltmain.sh-9310- test -z "$libdir" && \
##############################################
emboss-6.6.0+dfsg/ltmain.sh-9327- name="$func_basename_result"
emboss-6.6.0+dfsg/ltmain.sh:9328: eval libdir=`${SED} -n -e 's/^libdir=\(.*\)$/\1/p' $lib`
emboss-6.6.0+dfsg/ltmain.sh-9329- test -z "$libdir" && \
##############################################
emboss-6.6.0+dfsg/ltmain.sh-9646-# ### BEGIN LIBTOOL TAG CONFIG: disable-static
emboss-6.6.0+dfsg/ltmain.sh:9647:build_old_libs=`case $build_libtool_libs in yes) echo no;; *) echo yes;; esac`
emboss-6.6.0+dfsg/ltmain.sh-9648-# ### END LIBTOOL TAG CONFIG: disable-static
##############################################
emboss-6.6.0+dfsg/install-sh-229- fi
emboss-6.6.0+dfsg/install-sh:230: cp_umask=`expr '(' 777 - $mode % 1000 ')' $u_plus_rw`;;
emboss-6.6.0+dfsg/install-sh-231- *)
##############################################
emboss-6.6.0+dfsg/install-sh-276- dstdir=$dst
emboss-6.6.0+dfsg/install-sh:277: dst=$dstdir/`basename "$src"`
emboss-6.6.0+dfsg/install-sh-278- dstdir_status=0
##############################################
emboss-6.6.0+dfsg/install-sh-358- # FreeBSD 6.1 mkdir -m -p sets mode of existing directory.
emboss-6.6.0+dfsg/install-sh:359: ls_ld_tmpdir=`ls -ld "$tmpdir"`
emboss-6.6.0+dfsg/install-sh-360- case $ls_ld_tmpdir in
##############################################
emboss-6.6.0+dfsg/install-sh-365- $mkdirprog -m$different_mode -p -- "$tmpdir" && {
emboss-6.6.0+dfsg/install-sh:366: ls_ld_tmpdir_1=`ls -ld "$tmpdir"`
emboss-6.6.0+dfsg/install-sh-367- test "$ls_ld_tmpdir" = "$ls_ld_tmpdir_1"
##############################################
emboss-6.6.0+dfsg/install-sh-425- case $prefix in
emboss-6.6.0+dfsg/install-sh:426: *\'*) qprefix=`echo "$prefix" | sed "s/'/'\\\\\\\\''/g"`;;
emboss-6.6.0+dfsg/install-sh-427- *) qprefix=$prefix;;
##############################################
emboss-6.6.0+dfsg/install-sh-474- if $copy_on_change &&
emboss-6.6.0+dfsg/install-sh:475: old=`LC_ALL=C ls -dlL "$dst" 2>/dev/null` &&
emboss-6.6.0+dfsg/install-sh:476: new=`LC_ALL=C ls -dlL "$dsttmp" 2>/dev/null` &&
emboss-6.6.0+dfsg/install-sh-477-
##############################################
emboss-6.6.0+dfsg/INSTALL-173-directory configuration variables that were expressed in terms of
emboss-6.6.0+dfsg/INSTALL:174:`${prefix}'. Any directories that were specified during `configure',
emboss-6.6.0+dfsg/INSTALL-175-but not in terms of `${prefix}', must each be overridden at install
##############################################
emboss-6.6.0+dfsg/ajax/acd/Makefile.in-81-CONFIG_CLEAN_VPATH_FILES =
emboss-6.6.0+dfsg/ajax/acd/Makefile.in:82:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/ajax/acd/Makefile.in-83-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/ajax/acd/Makefile.in:84: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/ajax/acd/Makefile.in-85- *) f=$$p;; \
emboss-6.6.0+dfsg/ajax/acd/Makefile.in-86- esac;
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emboss-6.6.0+dfsg/ajax/graphics/Makefile.in-414-
emboss-6.6.0+dfsg/ajax/graphics/Makefile.in-415-libajaxg_la-ajhist.lo: ajhist.c
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emboss-6.6.0+dfsg/ajax/graphics/Makefile.in-445- @list='$(include_HEADERS)'; test -n "$(includedir)" || list=; \
emboss-6.6.0+dfsg/ajax/graphics/Makefile.in:446: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/ajax/graphics/Makefile.in-447- dir='$(DESTDIR)$(includedir)'; $(am__uninstall_files_from_dir)
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emboss-6.6.0+dfsg/ajax/graphics/Makefile.in-493-GTAGS:
emboss-6.6.0+dfsg/ajax/graphics/Makefile.in:494: here=`$(am__cd) $(top_builddir) && pwd` \
emboss-6.6.0+dfsg/ajax/graphics/Makefile.in-495- && $(am__cd) $(top_srcdir) \
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emboss-6.6.0+dfsg/ajax/graphics/Makefile.in-515-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/ajax/graphics/Makefile.in:516: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
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emboss-6.6.0+dfsg/ajax/graphics/Makefile.in-518- list='$(DISTFILES)'; \
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emboss-6.6.0+dfsg/ajax/graphics/Makefile.in-529- if test -d $$d/$$file; then \
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emboss-6.6.0+dfsg/ajax/zlib/crc32.c-204-/* =========================================================================
emboss-6.6.0+dfsg/ajax/zlib/crc32.c:205: * This function can be used by asm versions of crc32()
emboss-6.6.0+dfsg/ajax/zlib/crc32.c-206- */
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emboss-6.6.0+dfsg/ajax/zlib/zlib.h-1064- 8: DEBUG
emboss-6.6.0+dfsg/ajax/zlib/zlib.h:1065: 9: ASMV or ASMINF -- use ASM code
emboss-6.6.0+dfsg/ajax/zlib/zlib.h-1066- 10: ZLIB_WINAPI -- exported functions use the WINAPI calling convention
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emboss-6.6.0+dfsg/ajax/zlib/Makefile.in-75-CONFIG_CLEAN_VPATH_FILES =
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emboss-6.6.0+dfsg/ajax/zlib/Makefile.in-470- @list='$(ezlibinclude_HEADERS)'; test -n "$(ezlibincludedir)" || list=; \
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emboss-6.6.0+dfsg/ajax/zlib/Makefile.in-540-distdir: $(DISTFILES)
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emboss-6.6.0+dfsg/ajax/zlib/deflate.c-88-#ifdef ASMV
emboss-6.6.0+dfsg/ajax/zlib/deflate.c:89: void match_init OF((void)); /* asm code initialization */
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emboss-6.6.0+dfsg/ajax/zlib/deflate.c-1043-#ifdef ASMV
emboss-6.6.0+dfsg/ajax/zlib/deflate.c:1044: match_init(); /* initialize the asm code */
emboss-6.6.0+dfsg/ajax/zlib/deflate.c-1045-#endif
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emboss-6.6.0+dfsg/ajax/zlib/deflate.c-1059-#ifndef ASMV
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emboss-6.6.0+dfsg/ajax/core/Makefile.in-736-libajax_la-ajalign.lo: ajalign.c
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emboss-6.6.0+dfsg/emboss/index/Makefile.in-83- esac;
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emboss-6.6.0+dfsg/emboss/index/Makefile.in-85-am__install_max = 40
emboss-6.6.0+dfsg/emboss/index/Makefile.in-86-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/emboss/index/Makefile.in:87: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/emboss/index/Makefile.in-88-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/emboss/index/Makefile.in-485- @list='$(dist_embossindex_DATA)'; test -n "$(embossindexdir)" || list=; \
emboss-6.6.0+dfsg/emboss/index/Makefile.in:486: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/emboss/index/Makefile.in-487- dir='$(DESTDIR)$(embossindexdir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/emboss/index/Makefile.in-497-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/emboss/index/Makefile.in:498: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/index/Makefile.in:499: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/index/Makefile.in-500- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/emboss/index/Makefile.in-511- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/emboss/index/Makefile.in:512: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/emboss/index/Makefile.in-513- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/emboss/data/sofa.definition-657-id: SO:0000013
emboss-6.6.0+dfsg/emboss/data/sofa.definition:658:definition: Any one of several small cytoplasmic RNA moleculespresent in the cytoplasm and sometimes nucleus of a eukaryote.
emboss-6.6.0+dfsg/emboss/data/sofa.definition-659-definition_reference: http:www.ebi.ac.uk/embl/WebFeat/align/scRNA_s.html
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_SPLICE/Makefile.in-78- esac
emboss-6.6.0+dfsg/emboss/data/JASPAR_SPLICE/Makefile.in:79:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/emboss/data/JASPAR_SPLICE/Makefile.in-80-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/emboss/data/JASPAR_SPLICE/Makefile.in:81: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_SPLICE/Makefile.in-82- *) f=$$p;; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_SPLICE/Makefile.in-83- esac;
emboss-6.6.0+dfsg/emboss/data/JASPAR_SPLICE/Makefile.in:84:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/emboss/data/JASPAR_SPLICE/Makefile.in-85-am__install_max = 40
emboss-6.6.0+dfsg/emboss/data/JASPAR_SPLICE/Makefile.in-86-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/emboss/data/JASPAR_SPLICE/Makefile.in:87: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/emboss/data/JASPAR_SPLICE/Makefile.in-88-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_SPLICE/Makefile.in-330- @list='$(dist_jasparsplice_DATA)'; test -n "$(jasparsplicedir)" || list=; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_SPLICE/Makefile.in:331: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_SPLICE/Makefile.in-332- dir='$(DESTDIR)$(jasparsplicedir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_SPLICE/Makefile.in-342-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/emboss/data/JASPAR_SPLICE/Makefile.in:343: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_SPLICE/Makefile.in:344: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_SPLICE/Makefile.in-345- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_SPLICE/Makefile.in-356- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/emboss/data/JASPAR_SPLICE/Makefile.in:357: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_SPLICE/Makefile.in-358- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/emboss/data/dbxref.dat-3603-IDOther None
emboss-6.6.0+dfsg/emboss/data/dbxref.dat:3604:Name Germplasm Resources Information Network (GRIN)
emboss-6.6.0+dfsg/emboss/data/dbxref.dat:3605:Desc GRIN taxonomic data provide the structure and nomenclature for accessions of the National Plant Germplasm System (NPGS). All families and genera of vascular plants and species from throughout the world are represented, especially economic plants and their relatives. Information on scientific and common names, classification, distribution, references, and economic impacts are provided.
emboss-6.6.0+dfsg/emboss/data/dbxref.dat-3606-Server http://www.ars-grin.gov/cgi-bin/npgs/html/index.pl
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_FAM/Makefile.in-78- esac
emboss-6.6.0+dfsg/emboss/data/JASPAR_FAM/Makefile.in:79:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/emboss/data/JASPAR_FAM/Makefile.in-80-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/emboss/data/JASPAR_FAM/Makefile.in:81: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_FAM/Makefile.in-82- *) f=$$p;; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_FAM/Makefile.in-83- esac;
emboss-6.6.0+dfsg/emboss/data/JASPAR_FAM/Makefile.in:84:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/emboss/data/JASPAR_FAM/Makefile.in-85-am__install_max = 40
emboss-6.6.0+dfsg/emboss/data/JASPAR_FAM/Makefile.in-86-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/emboss/data/JASPAR_FAM/Makefile.in:87: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/emboss/data/JASPAR_FAM/Makefile.in-88-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_FAM/Makefile.in-330- @list='$(dist_jasparfam_DATA)'; test -n "$(jasparfamdir)" || list=; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_FAM/Makefile.in:331: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_FAM/Makefile.in-332- dir='$(DESTDIR)$(jasparfamdir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_FAM/Makefile.in-342-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/emboss/data/JASPAR_FAM/Makefile.in:343: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_FAM/Makefile.in:344: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_FAM/Makefile.in-345- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_FAM/Makefile.in-356- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/emboss/data/JASPAR_FAM/Makefile.in:357: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_FAM/Makefile.in-358- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-633-synonym: "protein docking during protein import into nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:634:synonym: "protein docking during protein transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-635-synonym: "protein docking during protein-nucleus import" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:636:synonym: "protein transport from cytoplasm to nucleus, docking" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-637-synonym: "protein-nucleus import, docking" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-648-synonym: "protein translocation during protein import into nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:649:synonym: "protein translocation during protein transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-650-synonym: "protein translocation during protein-nucleus import" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:651:synonym: "protein transport from cytoplasm to nucleus, translocation" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-652-synonym: "protein-nucleus import, translocation" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-663-synonym: "protein substrate release during protein import into nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:664:synonym: "protein substrate release during protein transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-665-synonym: "protein substrate release during protein-nucleus import" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:666:synonym: "protein transport from cytoplasm to nucleus, substrate release" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-667-synonym: "protein-nucleus import, substrate release" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-1066-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:1067:def: "The cell cycle phase which follows anaphase during M phase of mitosis and during which the chromosomes arrive at the poles of the cell and the division of the cytoplasm starts." [GOC:mtg_cell_cycle]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-1068-comment: Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct process is 'regulation of x/y phase transition'.
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-1396-is_a: GO:0043234 ! protein complex
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:1397:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-1398-
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-1455-is_a: GO:0043234 ! protein complex
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:1456:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-1457-
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-2811-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:2812:def: "OBSOLETE. A chromosome found in the cytoplasm during mitosis." [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-2813-comment: This term was made obsolete because it is based on a temporal division of the cell cycle.
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-2829-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:2830:def: "OBSOLETE. A chromosome found in the cytoplasm during interphase." [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-2831-comment: This term was made obsolete because it is based on a temporal division of the cell cycle.
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-3540-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:3541:def: "A cell cycle process that results in the division of the cytoplasm of a cell after mitosis, resulting in the separation of the original cell into two daughter cells." [GOC:mtg_cell_cycle]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-3542-synonym: "cytokinesis after mitosis" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-4115-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:4116:def: "The lipid bilayer surrounding a vacuole, the shape of which correlates with cell cycle phase. The membrane separates its contents from the cytoplasm of the cell. An example of this structure is found in Saccharomyces cerevisiae." [GOC:krc, GOC:mtg_sensu]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-4117-synonym: "fungal-type vacuolar membrane" RELATED []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-4134-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:4135:def: "A specialized vacuole of eukaryotic cells, especially Protozoa, that fills with water from the cytoplasm and then discharges this externally by the opening of contractile vacuole pores. Its function is probably osmoregulatory." [GOC:jl, PMID:10503189]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-4136-xref: Wikipedia:Contractile_vacuole
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-4976-synonym: "DNA-directed RNA polymerase IVa complex" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:4977:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-4978-is_a: GO:0055029 ! nuclear DNA-directed RNA polymerase complex
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-5161-is_a: GO:0000439 ! core TFIIH complex
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:5162:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-5163-intersection_of: GO:0000439 ! core TFIIH complex
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-5209-is_a: GO:0000441 ! SSL2-core TFIIH complex
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:5210:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-5211-relationship: part_of GO:0005675 ! holo TFIIH complex
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-6951-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:6952:def: "The formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane, by the fusion of the plasma membranes of two or more individual cells." [GOC:mtg_muscle, GOC:tb]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-6953-synonym: "cell fusion" BROAD []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-6961-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:6962:def: "The formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane, by one or more rounds of nuclear division without cytokinesis." [GOC:mah, GOC:tb]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-6963-synonym: "syncytium formation by mitosis without cell division" RELATED [GOC:mah]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-7168-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:7169:def: "A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA in the cytoplasm into higher order structures." [GOC:elh]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-7170-is_a: GO:0000786 ! nucleosome
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-7805-alt_id: GO:0033205
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:7806:def: "The division of the cytoplasm and the plasma membrane of a cell and its separation into two daughter cells." [GOC:mtg_cell_cycle]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-7807-subset: goslim_aspergillus
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-7834-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:7835:def: "The process of dividing the cytoplasm of a parent cell where a structure forms in the cytoplasm and grows until reaching the plasma membrane, thereby completely separating the cytoplasms of adjacent progeny cells. An example of this is found in Arabidopsis thaliana." [GOC:clt]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-7836-is_a: GO:0000910 ! cytokinesis
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-8040-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:8041:def: "A focus in the cytoplasm where mRNAs may become inactivated by decapping or some other mechanism. mRNA processing and binding proteins are localized to these foci." [GOC:clt, PMID:12730603]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-8042-synonym: "cytoplasmic foci" RELATED []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-8059-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:8060:def: "A septum or cross wall which does not entirely span the space between two portions of cell wall and may contain a specialized central pore structure. A porous septum allows the movement of organelles and/or cytoplasm between compartments." [GOC:clt]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-8061-synonym: "porous septum" BROAD []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-8067-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:8068:def: "A septum which spans a cell and does not allow exchange of organelles or cytoplasm between compartments." [GOC:clt]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-8069-synonym: "complete septum" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-12119-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:12120:def: "Any process in which the size of the nucleus with respect to the cytoplasm modulates the frequency, rate or extent of cell growth, the irreversible increase in size of a cell over time." [GOC:dph]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-12121-synonym: "detection of nuclear:cytoplasmic ratio to regulate cell growth" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-14132-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:14133:def: "Any apoptotic process in a neutrophil, any of the immature or mature forms of a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes." [CL:0000775, GOC:add, GOC:mtg_apoptosis, PMID:12752675, PMID:12960266]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-14134-synonym: "apoptosis of neutrophils" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-17572-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:17573:def: "A punctate, filamentous structure composed of Bcl10 that appears in the cytoplasm of T-cells shortly after T-cell receptor stimulation. Polkadots stands for Punctate Oligomeric Killing and Activating DOmains Transducing Signals." [PMID:14724296, PMID:16495340]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-17574-comment: Note that polkadots also contains some amount of MALT1. Interaction with MALT1 is required for formation of the polkadots.
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-64063-namespace: molecular_function
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:64064:def: "Activity of any of the molecules that transmit the signal from a TGF-beta receptor through the cytoplasm to the nucleus." [GOC:hjd]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-64065-comment: Note that this term and its children are useful for annotating proteins of the SMAD family.
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-68468-namespace: molecular_function
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:68469:def: "Enables the directed movement of substances between the nucleus and the cytoplasm of a cell." [GOC:ai]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-68470-xref: Reactome:REACT_102749 "GCK1:GKRP [cytosol] => GCK1:GKRP [nucleoplasm], Danio rerio"
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-68822-namespace: molecular_function
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:68823:def: "Interacting selectively and non-covalently with tropomyosin, a protein associated with actin filaments both in cytoplasm and, in association with troponin, in the thin filament of striated muscle." [GOC:curators, ISBN:0815316194]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-68824-is_a: GO:0008092 ! cytoskeletal protein binding
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-69737-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:69738:def: "The prospore membrane is a double-membraned structure that extends from the cytoplasmic face of the spindle pole bodies to encompass the spindle pole bodies and the four nuclear lobes that are formed during meiosis. It helps isolate the meiotic nuclei from the cytoplasm during spore formation and serves as a foundation for the formation of the spore walls. An example of this component is found in Schizosaccharomyces pombe." [ISBN:0879693649]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-69739-subset: gosubset_prok
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-70017-is_a: GO:0036387 ! pre-replicative complex
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:70018:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-70019-relationship: has_part GO:0000808 ! origin recognition complex
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-70097-synonym: "RNAP II complex" BROAD []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:70098:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-70099-is_a: GO:0055029 ! nuclear DNA-directed RNA polymerase complex
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-70109-synonym: "DNA-directed RNA polymerase III activity" RELATED []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:70110:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-70111-is_a: GO:0055029 ! nuclear DNA-directed RNA polymerase complex
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-70120-is_a: GO:0043234 ! protein complex
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:70121:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-70122-
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-70605-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:70606:def: "Structures of variable diameter visible in the nucleoplasm by electron microscopy, mainly observed near the border of condensed chromatin. The fibrils are enriched in RNA, and are believed to be sites of pre-mRNA splicing and polyadenylylation representing the in situ form of nascent transcripts." [PMID:14731598]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-70607-is_a: GO:0044454 ! nuclear chromosome part
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-70638-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:70639:def: "A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome." [ISBN:0198506732]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-70640-subset: goslim_aspergillus
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-70726-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:70727:def: "A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration." [ISBN:0198506732]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-70728-subset: goslim_aspergillus
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-71101-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:71102:def: "The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell." [GOC:ai]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-71103-subset: gosubset_prok
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-71193-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:71194:def: "The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached)." [ISBN:0198506732]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-71195-subset: goslim_aspergillus
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-71493-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:71494:def: "Any particle of coalesced lipids in the cytoplasm of a cell. May include associated proteins." [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-71495-comment: Note that this term does not refer to vesicles, but instead to structures in which lipids do not necessarily form bilayers.
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-71621-alt_id: GO:0030480
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:71622:def: "A cytoskeletal structure composed of actin filaments and myosin that forms beneath the plasma membrane of many cells, including animal cells and yeast cells, in a plane perpendicular to the axis of the spindle, i.e. the cell division plane. Ring contraction is associated with centripetal growth of the membrane that divides the cytoplasm of the two daughter cells. In animal cells, the contractile ring is located inside the plasma membrane at the location of the cleavage furrow. In budding fungal cells, e.g. mitotic S. cerevisiae cells, the contractile ring forms beneath the plasma membrane at the mother-bud neck before mitosis." [GOC:expert_jrp, GOC:sgd_curators, ISBN:0805319409, ISBN:0815316194]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-71623-synonym: "actomyosin ring" RELATED []
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-71656-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:71657:def: "The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes." [GOC:hgd, GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-71658-subset: goslim_aspergillus
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-71819-def: "A conserved heterodimeric protein complex that binds to the 5' terminal cap structure m7G(5')ppp(5')N of nascent eukaryotic RNA polymerase II transcripts such as pre-mRNA and U snRNA. The consists of proteins known as CBP20 and CBP80, binds to cap structures in the nucleus, and is involved in pre-mRNA splicing, 3'-end formation, and RNA nuclear export." [PMID:16043498]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:71820:comment: Note that this complex can be found in the cytoplasm as well as the nucleus.
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-71821-synonym: "CBC" RELATED []
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-71854-is_a: GO:0043234 ! protein complex
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:71855:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-71856-
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-72094-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:72095:def: "Any microtubule in the cytoplasm of a cell." [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-72096-synonym: "non-spindle-associated astral microtubule" NARROW []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-72105-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:72106:def: "A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins." [http://www.cytochemistry.net/Cell-biology/intermediate_filaments.htm, ISBN:0198506732]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-72107-synonym: "intermediate filament associated protein" RELATED []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-72323-alt_id: GO:0016599
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:72324:def: "A membrane raft that forms small pit, depression, or invagination that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane. Examples include any of the minute pits or incuppings of the cell membrane formed during pinocytosis. Such caveolae may be pinched off to form free vesicles within the cytoplasm." [GOC:mah, ISBN:0721662544, PMID:16645198]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-72325-synonym: "caveolae" EXACT []
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-79082-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:79083:def: "The import of RNA from the cytoplasm to the nucleus." [GOC:ma]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-79084-synonym: "RNA import into cell nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:79085:synonym: "RNA transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-79086-synonym: "RNA-nucleus import" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-81812-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:81813:def: "The directed movement of a protein from the cytoplasm to the nucleus." [GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-81814-synonym: "establishment of protein localization to nucleus" EXACT [GOC:mah]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-81816-synonym: "protein nucleus import" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:81817:synonym: "protein transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-81818-is_a: GO:0006886 ! intracellular protein transport
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-81827-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:81828:def: "The directed movement of a protein bearing a nuclear localization signal (NLS) from the cytoplasm into the nucleus, across the nuclear membrane." [GOC:ai]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-81829-synonym: "NLS-bearing substrate import into cell nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:81830:synonym: "NLS-bearing substrate transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-81831-synonym: "NLS-bearing substrate-nucleus import" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-81837-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:81838:def: "The directed movement of a small nuclear ribonucleoprotein from the cytoplasm into the nucleus, across the nuclear membrane." [GOC:ai]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-81839-synonym: "snRNP protein import into cell nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:81840:synonym: "snRNP protein transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-81841-synonym: "snRNP protein-nucleus import" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-81848-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:81849:def: "The directed movement of a heterogeneous nuclear ribonucleoprotein from the cytoplasm into the nucleus, across the nuclear membrane." [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-81850-synonym: "mRNA-binding (hnRNP) protein import into cell nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:81851:synonym: "mRNA-binding (hnRNP) protein transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-81852-synonym: "mRNA-binding (hnRNP) protein-nucleus import" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-81858-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:81859:def: "The directed movement of a ribosomal protein from the cytoplasm into the nucleus, across the nuclear membrane." [GOC:ai]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-81860-synonym: "ribosomal protein import into cell nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:81861:synonym: "ribosomal protein transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-81862-synonym: "ribosomal protein-nucleus import" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-86522-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:86523:def: "The formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane. Syncytia are normally derived from single cells that fuse or fail to complete cell division." [ISBN:0198506732]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-86524-subset: goslim_pir
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-87441-id: GO:0007028
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:87442:name: cytoplasm organization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-87443-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:87444:def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the cytoplasm. The cytoplasm is all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures." [GOC:curators, GOC:dph, GOC:jl, GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-87445-subset: goslim_pir
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-87446-subset: gosubset_prok
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:87447:synonym: "cytoplasm organisation" EXACT [GOC:curators]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:87448:synonym: "cytoplasm organization and biogenesis" RELATED [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-87449-is_a: GO:0016043 ! cellular component organization
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-88358-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:88359:def: "A cell cycle process that results in the division of the cytoplasm of a cell after meiosis I, resulting in the separation of the original cell into two daughter cells." [GOC:mtg_cell_cycle]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-88360-synonym: "cytokinesis after meiosis I" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-88369-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:88370:def: "A cell cycle process that results in the division of the cytoplasm of a cell after meiosis II, resulting in the separation of the original cell into two daughter cells." [GOC:mtg_cell_cycle]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-88371-synonym: "cytokinesis after meiosis II" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-88380-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:88381:def: "A cell cycle process that occurs as part of the male meiotic cell cycle and results in the division of the cytoplasm of a cell to produce two daughter cells." [GOC:ai]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-88382-synonym: "cytokinesis after male meiosis" EXACT [GOC:dph, GOC:tb]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-88613-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:88614:def: "The cell cycle phase which follows anaphase I of meiosis and during which the chromosomes arrive at the poles of the cell and the division of the cytoplasm starts." [GOC:mtg_cell_cycle]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-88615-comment: Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct process is 'regulation of x/y phase transition'.
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-88671-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:88672:def: "The cell cycle phase which follows anaphase II of meiosis and during which the chromosomes arrive at the poles of the cell and the division of the cytoplasm starts." [GOC:mtg_cell_cycle]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-88673-comment: Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct process is 'regulation of x/y phase transition'.
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-89148-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:89149:def: "The directed movement of a SMAD proteins from the cytoplasm into the nucleus. Pathway-restricted SMAD proteins and common-partner SMAD proteins are involved in the transforming growth factor beta receptor signaling pathways." [GOC:dph]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-89150-comment: Note that 'translocation' is sometimes used in the literature to refer to the entire process of protein import into the nucleus, but in GO refers specifically to the step in which a cargo-carrier protein complex moves through the nuclear pore complex.
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-90539-xref: Wikipedia:Vitellogenesis
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:90540:is_a: GO:0007028 ! cytoplasm organization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-90541-is_a: GO:0022412 ! cellular process involved in reproduction in multicellular organism
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-90737-id: GO:0007315
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:90738:name: pole plasm assembly
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-90739-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-90740-alt_id: GO:0048113
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:90741:def: "Establishment of the specialized cytoplasm found at the poles of the egg. An example of this is found in Drosophila melanogaster." [GOC:mtg_sensu]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:90742:is_a: GO:0007028 ! cytoplasm organization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-90743-is_a: GO:0022412 ! cellular process involved in reproduction in multicellular organism
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-90748-id: GO:0007316
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:90749:name: pole plasm RNA localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-90750-namespace: biological_process
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-90752-def: "Any process in which RNA is transported to, or maintained in, the oocyte pole plasm. An example of this is found in Drosophila melanogaster." [GOC:ai]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:90753:synonym: "establishment and maintenance of pole plasm RNA localization" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:90754:synonym: "oocyte pole plasm RNA localization" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:90755:synonym: "pole plasm RNA localisation" EXACT [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-90756-is_a: GO:0006403 ! RNA localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:90757:relationship: part_of GO:0007315 ! pole plasm assembly
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-90758-
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-90760-id: GO:0007317
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:90761:name: regulation of pole plasm oskar mRNA localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-90762-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-90763-def: "Any process that modulates the frequency, rate or extent of the process in which oskar mRNA is transported to, or maintained in, the oocyte pole plasm." [GOC:hb]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:90764:synonym: "regulation of oocyte pole plasm oskar mRNA localization" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:90765:synonym: "regulation of pole plasm oskar mRNA localisation" EXACT [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-90766-is_a: GO:0044087 ! regulation of cellular component biogenesis
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-90771-intersection_of: GO:0065007 ! biological regulation
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:90772:intersection_of: regulates GO:0045451 ! pole plasm oskar mRNA localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:90773:relationship: regulates GO:0045451 ! pole plasm oskar mRNA localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-90774-
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-90776-id: GO:0007318
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:90777:name: pole plasm protein localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-90778-namespace: biological_process
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-90780-def: "Any process in which a protein is transported to, or maintained in, the oocyte pole plasm. An example of this is found in Drosophila melanogaster." [GOC:ai]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:90781:synonym: "establishment and maintenance of pole plasm protein localization" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:90782:synonym: "oocyte pole plasm protein localization" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:90783:synonym: "pole plasm protein localisation" EXACT [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-90784-is_a: GO:0008105 ! asymmetric protein localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:90785:relationship: part_of GO:0007315 ! pole plasm assembly
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-90786-
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-92409-alt_id: GO:0048637
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:92410:def: "The developmental sequence of events leading to the formation of adult muscle that occurs in the anima. In vertebrate skeletal muscle the main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers." [GOC:mtg_muscle]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-92411-synonym: "myogenesis" RELATED []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-93794-is_a: GO:0043234 ! protein complex
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:93795:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-93796-
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-101595-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:101596:def: "The release of NF-kappaB from specific molecules in the cytoplasm to which it was bound, thereby allowing its translocation into the nucleus." [GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-101597-synonym: "activation of NF-kappa B" RELATED []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-111271-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:111272:def: "OBSOLETE. In Gram-negative bacteria the membrane that separates the cytoplasm from the murein sacculus." [GOC:ma]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-111273-comment: This term was made obsolete because it was defined inaccurately.
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-113478-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:113479:def: "A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell." [ISBN:0198506732]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-113480-synonym: "plasmodesmata" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-113526-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:113527:def: "Endoplasmic reticulum found in plasmodesmata, junctions connecting the cytoplasm of adjacent plant cells." [GOC:ai]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-113528-synonym: "plasmodesmatal ER" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-113747-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:113748:def: "Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid." [GOC:jl, ISBN:0198547684]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-113749-subset: goslim_generic
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-114020-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:114021:def: "The union of gametes of opposite sexes during the process of sexual reproduction to form a zygote. It involves the fusion of the gametic nuclei (karyogamy) and cytoplasm (plasmogamy)." [GOC:tb, ISBN:0198506732]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-114022-synonym: "syngamy" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-114884-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:114885:def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a plasmodesma, a fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell." [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-114886-synonym: "plasmodesma organisation" EXACT [GOC:curators]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-115381-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:115382:def: "The lipid bilayer surrounding a vacuole that retains the same shape regardless of cell cycle phase. The membrane separates its contents from the cytoplasm of the cell. An example of this component is found in Arabidopsis thaliana." [GOC:mtg_sensu, ISBN:0471245208]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-115383-synonym: "membrane of vacuole with cell cycle-independent morphology" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-121242-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:121243:def: "A lytic vacuole that is maintained at acidic pH and has different tonoplast composition compared to the central vacuole. Found during leaf senescence and develops in the peripheral cytoplasm of cells that contain chloroplast." [PMID:15743448]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-121244-synonym: "senescence associated vacuole" EXACT [GOC:curators]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-121805-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:121806:def: "The separation of the multi-nucleate endosperm into individual cells. In many plant species, the endosperm that nurtures the embryo in the seed initially develops as a syncytium. This syncytial phase ends with simultaneous partitioning of the multi-nucleate cytoplasm into individual cells, a process referred to as cellularization." [PMID:12421698]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-121807-synonym: "cellularization of endosperm" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-123201-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:123202:def: "The movement of substances between cells via plasmodesmata. Plasmodesmata is a fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell." [PMID:17601829]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-123203-synonym: "plasmodesma-mediated cell-to-cell transport" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-123454-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:123455:def: "Any process that modulates the rate of the directed movement of calcium ions into the cytosol of a cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components." [GOC:dph, GOC:tb]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-123456-is_a: GO:0032386 ! regulation of intracellular transport
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-123466-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:123467:def: "Any process that decreases the rate of the directed movement of calcium ions into the cytosol of a cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components." [GOC:dph, GOC:tb]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-123468-is_a: GO:0010522 ! regulation of calcium ion transport into cytosol
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-123480-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:123481:def: "Any process that increases the rate of the directed movement of calcium ions into the cytosol of a cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components." [GOC:dph, GOC:tb]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-123482-is_a: GO:0010522 ! regulation of calcium ion transport into cytosol
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-128734-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:128735:def: "The process in which a relatively unspecialized cell acquires specialized features of a sclerenchyma cell. A sclerenchyma cell is a plant cell with thick lignified walls, normally dead at maturity and specialized for structural strength. Includes fiber cells, that are greatly elongated; and sclereids, that are more isodiametric. Intermediate types exist. Cells may or may not be devoid of protoplasm at maturity. Cell form and size are variable." [CL:0000276, GOC:ef, GOC:jid, PO:0000077]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-128736-is_a: GO:0030154 ! cell differentiation
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-134725-namespace: molecular_function
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:134726:def: "OBSOLETE. Catalysis of the transport of electrolytes and other small molecules across a cell membrane. They are synthesized by one cell and secreted for insertion into the membrane of another cell where they form transmembrane pores. They may exert their toxic effects by allowing the free flow of electrolytes and other small molecules across the membrane, or they may allow entry into the target cell cytoplasm of a toxin protein that ultimately kills the cell." [PMID:10839820]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-134727-comment: This term was made obsolete because it represents a class of gene products.
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-136773-namespace: molecular_function
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:136774:def: "OBSOLETE. Plasmid-encoded bacteriocins which are produced by enteric bacteria. Exert a lethal effect on other bacteria including E. coli strains that lack the Col plasmid. Bind to a cell surface receptor and are transported into the periplasm via an energy-dependent process involving a TonB- or TolA-dependent hetero-oligomeric protein complex. Some colicins kill their target cell by inserting into the cytoplasmic membrane where they form voltage-sensitive (trans-negative) channels that depolarize and deenergize the cell, and thereby kill it." [TC:1.C.1.-.-]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-136775-comment: This term was made obsolete because it represents a class of gene products.
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-136838-namespace: molecular_function
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:136839:def: "Transports a passenger protein from the periplasm to the external milieu; the passenger protein and the porin are the N- and C-terminal regions of the same protein, respectively." [GOC:mtg_transport, ISBN:0815340729, TC:1.B.12.-.-]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-136840-subset: gosubset_prok
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-136847-namespace: molecular_function
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:136848:def: "Catalysis of the transfer of adhesin from the periplasm to the external milieu; the adhesin and the porin are the N- and C-terminal regions of the same protein, respectively." [GOC:mtg_transport, ISBN:0815340729]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-136849-is_a: GO:0015474 ! autotransporter activity
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-136854-namespace: molecular_function
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:136855:def: "Catalysis of the transfer of hemaglutinin from the periplasm to the external milieu; the hemaglutinin and the porin are the N- and C-terminal regions of the same protein, respectively." [GOC:mtg_transport, ISBN:0815340729]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-136856-is_a: GO:0015474 ! autotransporter activity
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-136861-namespace: molecular_function
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:136862:def: "OBSOLETE. A porin of the bacterial outer membrane that forms transmembrane pores and transports relatively large molecules from the external milieu to the periplasm in an energized process. Energizing of transport across the outer membrane requires a heterotrimeric complex of proteins, the TonB-ExbB-ExbD complex, or in some cases, the TolA-TolQ-TolR complex. Energizing requires proton motive force across the cytoplasmic membrane." [GOC:mtg_transport, ISBN:0815340729, TC:1.B.13.-.-]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-136863-comment: This term was made obsolete because it combines two functions that are not linked.
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-141965-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:141966:def: "A membrane-bounded vesicle found in the cytoplasm of the cell." [GOC:ai, GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-141967-subset: goslim_aspergillus
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-142046-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:142047:def: "The directed movement of tRNA, transfer ribonucleic acid, from the cytoplasm into a mitochondrion." [GOC:ma, PMID:10988073, PMID:11121736]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-142048-synonym: "cytoplasmic tRNA import into mitochondria" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-147191-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:147192:def: "The process in which the size of the nucleus with respect to its cytoplasm is sensed by a cell." [GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-147193-synonym: "interpretation of nuclear:cytoplasmic ratio" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-147250-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:147251:def: "The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, or within the cytoplasm of a cell." [GOC:ai]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-147252-synonym: "cytoplasmic streaming" NARROW []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-147746-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:147747:def: "The cytoplasm of a muscle cell; includes the sarcoplasmic reticulum." [ISBN:0198547684]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-147748-xref: Wikipedia:Sarcoplasm
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-147755-alt_id: GO:0008221
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:147756:def: "A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle cell; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage." [GOC:mtg_muscle, ISBN:0124325653, ISBN:0198547684]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:147757:comment: See also the cellular component terms 'sarcoplasm ; GO:0016528', 'nuclear envelope ; GO:0005635' and 'endoplasmic reticulum ; GO:0005783'.
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-147758-xref: Wikipedia:Endoplasmic_reticulum#Sarcoplasmic_reticulum
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-148327-subset: goslim_pir
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:148328:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-148329-is_a: GO:0055029 ! nuclear DNA-directed RNA polymerase complex
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-148342-is_a: GO:0043234 ! protein complex
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:148343:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-148344-relationship: has_part GO:0070847 ! core mediator complex
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-148449-xref: NIF_Subcellular:sao505137457
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:148450:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-148451-
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-153055-is_a: GO:0043234 ! protein complex
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:153056:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-153057-
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-165458-alt_id: GO:0075601
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:165459:def: "A process by which a virus establishes a latent state within its host, either as an integrated provirus within the host genome or as an episome, where viral genome remains in the cytoplasm or nucleus as distinct objects." [GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-165460-subset: virus_checked
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-166041-id: GO:0019094
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:166042:name: pole plasm mRNA localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-166043-namespace: biological_process
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-166046-synonym: "establishment and maintenance of mRNA localization in pole plasm" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:166047:synonym: "establishment and maintenance of pole plasm mRNA localization" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:166048:synonym: "oocyte pole plasm mRNA localization" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-166049-synonym: "pole granule RNA localization" BROAD []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:166050:synonym: "pole plasm mRNA localisation" EXACT [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:166051:is_a: GO:0007316 ! pole plasm RNA localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-166052-is_a: GO:0022412 ! cellular process involved in reproduction in multicellular organism
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-166056-id: GO:0019095
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:166057:name: pole plasm mitochondrial rRNA localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-166058-namespace: biological_process
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-166061-synonym: "establishment and maintenance of mitochondrial rRNA localization in pole plasm" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:166062:synonym: "oocyte pole plasm mitochondrial rRNA localization" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:166063:synonym: "pole plasm mitochondrial rRNA localisation" EXACT [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:166064:is_a: GO:0007316 ! pole plasm RNA localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-166065-is_a: GO:0019093 ! mitochondrial RNA localization
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-166068-id: GO:0019096
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:166069:name: pole plasm mitochondrial lrRNA localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-166070-namespace: biological_process
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-166073-synonym: "establishment and maintenance of mitochondrial lrRNA localization in pole plasm" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:166074:synonym: "oocyte pole plasm mitochondrial lrRNA localization" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:166075:synonym: "pole plasm mitochondrial lrRNA localisation" EXACT [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:166076:is_a: GO:0019095 ! pole plasm mitochondrial rRNA localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-166077-
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-166079-id: GO:0019097
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:166080:name: pole plasm mitochondrial srRNA localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-166081-namespace: biological_process
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-166084-synonym: "establishment and maintenance of mitochondrial localization in pole plasm" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:166085:synonym: "oocyte pole plasm mitochondrial srRNA localization" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:166086:synonym: "pole plasm mitochondrial srRNA localisation" EXACT [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:166087:is_a: GO:0019095 ! pole plasm mitochondrial rRNA localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-166088-
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-167523-namespace: molecular_function
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:167524:def: "Interacting selectively and non-covalently with an intermediate filament, a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of higher eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space." [ISBN:0198506732]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-167525-is_a: GO:0032403 ! protein complex binding
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-176302-synonym: "parasitophorous vacuole" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:176303:is_a: GO:0033655 ! host cell cytoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-176304-is_a: GO:0065010 ! extracellular membrane-bounded organelle
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-176519-def: "Protrusion that develops in the plasma membrane of a parasitized erythrocyte. An example of this component is found in Plasmodium species." [GOC:mb]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:176520:is_a: GO:0033655 ! host cell cytoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-176521-
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-176570-synonym: "Maurers cleft" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:176571:is_a: GO:0033655 ! host cell cytoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-176572-
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-177120-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:177121:def: "The process whose specific outcome is the progression of the optic nerve over time, from its formation to the mature structure. The sensory optic nerve originates from the bipolar cells of the retina and conducts visual information to the brainstem. The optic nerve exits the back of the eye in the orbit, enters the optic canal, and enters the central nervous system at the optic chiasm (crossing) where the nerve fibers become the optic tract just prior to entering the hindbrain." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, ISBN:0838580343]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-177122-comment: This term was added by GO_REF:0000021.
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-177914-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:177915:def: "The process in which the anatomical structure of the optic nerve is generated and organized. The sensory optic nerve originates from the bipolar cells of the retina and conducts visual information to the brainstem. The optic nerve exits the back of the eye in the orbit, enters the optic canal, and enters the central nervous system at the optic chiasm (crossing) where the nerve fibers become the optic tract just prior to entering the hindbrain." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, ISBN:0838580343]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-177916-comment: This term was added by GO_REF:0000021.
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-177924-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:177925:def: "A developmental process, independent of morphogenetic (shape) change, that is required for the optic nerve to attain its fully functional state. The sensory optic nerve originates from the bipolar cells of the retina and conducts visual information to the brainstem. The optic nerve exits the back of the eye in the orbit, enters the optic canal, and enters the central nervous system at the optic chiasm (crossing) where the nerve fibers become the optic tract just prior to entering the hindbrain." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, ISBN:0838580343]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-177926-comment: This term was added by GO_REF:0000021.
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-177934-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:177935:def: "The process that contributes to the act of creating the structural organization of the optic nerve. This process pertains to the physical shaping of a rudimentary structure. The sensory optic nerve originates from the bipolar cells of the retina and conducts visual information to the brainstem. The optic nerve exits the back of the eye in the orbit, enters the optic canal, and enters the central nervous system at the optic chiasm (crossing) where the nerve fibers become the optic tract just prior to entering the hindbrain." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, ISBN:0838580343]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-177936-comment: This term was added by GO_REF:0000021.
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-177945-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:177946:def: "The process that gives rise to the optic nerve. This process pertains to the initial formation of a structure from unspecified parts. The sensory optic nerve originates from the bipolar cells of the retina and conducts visual information to the brainstem. The optic nerve exits the back of the eye in the orbit, enters the optic canal, and enters the central nervous system at the optic chiasm (crossing) where the nerve fibers become the optic tract just prior to entering the hindbrain." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, ISBN:0838580343]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-177947-comment: This term was added by GO_REF:0000021.
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-188246-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:188247:def: "The cytoplasm of a host cell." [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-188248-subset: gosubset_prok
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-189737-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:189738:def: "Partial constriction of the cytoplasm of an embryo to form a furrow that resembles a cleavage furrow but does not complete cytokinesis." [GOC:mah, PMID:10751167, PMID:7729583]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-189739-is_a: GO:0032502 ! developmental process
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-189746-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:189747:def: "Formation of furrows in the cytoplasm between nuclei during cell cycles in embryos that contribute to the formation of the syncytial blastoderm. An example of this process is found in Drosophila melanogaster." [GOC:mtg_sensu]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-189748-synonym: "pseudocleavage during syncytial blastoderm formation" RELATED [GOC:dph]
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-190697-def: "Any of several heterodimers containing one or two Noc proteins, associated with preribosomal complexes; involved in ribosome biogenesis." [PMID:12446671]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:190698:comment: Noc complexes exhibit a dynamic intranuclear location; consider also annotating to 'nucleolus ; GO:0005730' and/or 'nucleoplasm ; GO:0005654'. Note that the definition uses Saccharomyces gene product names because this complex has only been described in Saccharomyces cerevisiae and no other names have yet arisen; the term nevertheless can be used for analogous complexes in other eukaryotes, and the definition can be changed if better wording is found.
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-190699-subset: goslim_pir
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-190707-def: "A heterodimer associated with 90S and 66S preribosomes. Predominantly, but not exclusively, nucleolar; involved in ribosomal large subunit biogenesis." [PMID:12446671]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:190708:comment: Noc complexes exhibit a dynamic intranuclear location; consider also annotating to 'nucleolus ; GO:0005730' and/or 'nucleoplasm ; GO:0005654'. Note that the term name uses Saccharomyces gene product names because no other names have yet arisen for this complex; the term nevertheless can be used for analogous complexes in other eukaryotes, and the name can be changed if better wording is found.
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-190709-is_a: GO:0030689 ! Noc complex
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-190717-def: "A heterodimer associated with 66S preribosomes; predominantly nucleoplasmic, but also locates to the nucleolus; involved in ribosomal large subunit biogenesis." [PMID:12446671]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:190718:comment: Noc complexes exhibit a dynamic intranuclear location; consider also annotating to 'nucleolus ; GO:0005730' and/or 'nucleoplasm ; GO:0005654'. Note that the term name uses Saccharomyces gene product names because no other names have yet arisen for this complex; the term nevertheless can be used for analogous complexes in other eukaryotes, and the name can be changed if better wording is found.
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-190719-is_a: GO:0030689 ! Noc complex
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-190726-def: "A heterodimer associated with precursors of the eukaryotic small ribosomal subunit, including the 90S preribosome; involved in small subunit biogenesis." [PMID:12446671]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:190727:comment: Noc complexes exhibit a dynamic intranuclear location; consider also annotating to 'nucleolus ; GO:0005730' and/or 'nucleoplasm ; GO:0005654' and/or 'nuclear pore ; GO:0005643'. Note that the term name uses Saccharomyces gene product names because no other names have yet arisen for this complex; the term nevertheless can be used for analogous complexes in other eukaryotes, and the name can be changed if better wording is found.
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-190728-synonym: "Nop7 complex" EXACT [GOC:jh, GOC:mah]
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-190759-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:190760:def: "The central portion of the flagellar basal body, which spans the periplasm and threads through the rings. Examples of this component are found in Bacterial species." [GOC:mtg_sensu, PMID:10572114, PMID:11133968, PMID:12624192]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-190761-subset: gosubset_prok
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-191043-is_a: GO:0071826 ! ribonucleoprotein complex subunit organization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:191044:relationship: part_of GO:0007315 ! pole plasm assembly
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-191045-
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-195883-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:195884:def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in the cytoplasm of a cell." [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-195885-synonym: "cytoplasmic microtubule organisation" EXACT [GOC:curators]
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-196916-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:196917:def: "The side of the outer membrane that is opposite to the side that faces the periplasm of the cell." [GOC:mlg, GOC:mtg_sensu]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-196918-subset: gosubset_prok
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-196927-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:196928:def: "The side of the outer membrane that faces the periplasm of the cell." [GOC:mlg, GOC:mtg_sensu]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-196929-subset: gosubset_prok
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-197113-is_a: GO:0032993 ! protein-DNA complex
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:197114:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-197115-relationship: has_part GO:0005656 ! nuclear pre-replicative complex
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-198877-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:198878:def: "A vesicle formed of membrane or protein, found in the cytoplasm of a cell." [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-198879-subset: gosubset_prok
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-199003-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:199004:def: "The process in which the cytoplasm of the outermost cells of the vertebrate epidermis is replaced by keratin. Keratinization occurs in the stratum corneum, feathers, hair, claws, nails, hooves, and horns." [GOC:dph, GOC:ebc, GOC:sdb_2009, GOC:tb]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-199005-is_a: GO:0032502 ! developmental process
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-204447-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:204448:def: "The directed movement of mRNA from the nucleus to the cytoplasm during a heat stimulus, a temperature stimulus above the optimal temperature for the organism; in particular, a process that enables an organism withstand exposure to temperatures that would otherwise lethally impair poly(A)+ mRNA-nucleus export." [GOC:mah, GOC:vw]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-204449-synonym: "mRNA export from cell nucleus during heat stress" EXACT []
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-204781-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:204782:def: "A prominent mass in the cytoplasm of previtellogenic oocytes. The cloud contains both mitochondria and electron-dense granulofibrillar material (GFM) and is the source of germinal granule material." [PMID:6541166]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-204783-synonym: "Balbiani body" EXACT []
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-204945-is_a: GO:0043234 ! protein complex
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:204946:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-204947-relationship: part_of GO:0016591 ! DNA-directed RNA polymerase II, holoenzyme
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-205228-id: GO:0032066
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:205229:name: nucleolus to nucleoplasm transport
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-205230-namespace: biological_process
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-206226-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:206227:def: "In animal cells, the first sign of cleavage, or cytokinesis, is the appearance of a shallow groove in the cell surface near the old metaphase plate. A contractile ring containing actin and myosin is located just inside the plasma membrane at the location of the furrow. Ring contraction is associated with centripetal growth of the membrane that deepens the cleavage furrow and divides the cytoplasm of the two daughter cells. While the term 'cleavage furrow' was initially associated with animal cells, such a structure occurs in many other types of cells, including unicellular protists." [ISBN:0805319409]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-206228-xref: Wikipedia:Cleavage_furrow
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-207399-def: "A constitutive biosynthetic process that occurs under nutrient-rich conditions, in which two resident vacuolar hydrolases, aminopeptidase I and alpha-mannosidase, are sequestered into vesicles; these vesicles are transported to, and then fuse with, the vacuole. This pathway is mostly observed in yeast." [PMID:12865942, PMID:15659643]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:207400:synonym: "cytoplasm to vacuole targeting" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-207401-synonym: "cytoplasm-to-vacuole targeting" EXACT []
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-209756-alt_id: GO:0071775
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:209757:def: "Any process that modulates the frequency, rate or extent of the division of the cytoplasm of a cell and its separation into two daughter cells." [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-209758-synonym: "regulation of cell cycle cytokinesis" EXACT []
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-209769-alt_id: GO:0071776
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:209770:def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the division of the cytoplasm of a cell, and its separation into two daughter cells." [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-209771-synonym: "down regulation of cytokinesis" EXACT []
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-209787-alt_id: GO:0071777
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:209788:def: "Any process that activates or increases the frequency, rate or extent of the division of the cytoplasm of a cell, and its separation into two daughter cells." [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-209789-synonym: "activation of cytokinesis" NARROW []
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-210168-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:210169:def: "A cellular process that is involved in cytokinesis (the division of the cytoplasm of a cell and its separation into two daughter cells)." [GOC:bf, GOC:isa_complete, GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-210170-subset: gosubset_prok
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-213575-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:213576:def: "A protein complex that contains the survival motor neuron (SMN) protein and at least eight additional integral components, including the Gemin2-8 and Unrip proteins; the complex is found in the cytoplasm and in nuclear Gems, and is involved in spliceosomal snRNP assembly in the cytoplasm and in pre-mRNA splicing in the nucleus." [PMID:16434402, PMID:17023415]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-213577-comment: Note that a larger complex containing Sm proteins and other subunits is also sometimes referred to as the 'SMN complex'. The larger complex is represented by 'SMN-Sm protein complex ; GO:0034719'.
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-217353-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:217354:def: "A cytosolic vesicle that is enclosed by a double membrane and is implicated in the cytoplasm to vacuole targeting pathway. These vesicles are found in the yeast S. cerevisiae, and contain vacuolar hydrolases, aminopeptidase I (Ape1p) and alpha-mannosidase (Ams1p)." [GOC:rb, PMID:15138258]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-217355-is_a: GO:0016023 ! cytoplasmic membrane-bounded vesicle
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-217901-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:217902:def: "Any process that modulates the vectorial transfer of a protein from the cytoplasm into the nucleus, across the nuclear membrane." [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-217903-synonym: "regulation of protein import into cell nucleus, translocation" EXACT []
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-217912-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:217913:def: "Any process that stops, prevents or reduces the vectorial transfer of a protein from the cytoplasm into the nucleus, across the nuclear membrane." [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-217914-synonym: "negative regulation of protein import into cell nucleus, translocation" EXACT []
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-217924-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:217925:def: "Any process that activates or increases the vectorial transfer of a protein from the cytoplasm into the nucleus, across the nuclear membrane." [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-217926-synonym: "positive regulation of protein import into cell nucleus, translocation" EXACT []
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-218373-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:218374:def: "A cell cycle process that results in the division of the cytoplasm of a cell after meiosis, resulting in the separation of the original cell into two daughter cells." [GOC:mtg_cell_cycle]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-218375-synonym: "cytokinesis after meiosis" EXACT []
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-219312-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:219313:def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a contractile vacuole. A specialized vacuole that fills with water from the cytoplasm and then discharges this externally by the opening of contractile vacuole pores." [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-219314-synonym: "contractile vacuole organisation" EXACT [GOC:mah]
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-220353-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:220354:def: "A ribonucleoprotein complex found in the cytoplasm of male germ cells, composed of exceedingly thin filaments that are consolidated into a compact mass or into dense strands of varying thickness that branch to form an irregular network. Contains mRNAs, miRNAs, and protein components involved in miRNA processing (such as Argonaute proteins and the endonuclease Dicer) and in RNA decay (such as the decapping enzyme DCP1a and GW182)." [PMID:17183363]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-220355-is_a: GO:0035770 ! ribonucleoprotein granule
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-223096-is_a: GO:0033648 ! host intracellular membrane-bounded organelle
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:223097:is_a: GO:0033655 ! host cell cytoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-223098-
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-223102-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:223103:def: "Any member of a family of organelles as found in the cytoplasm of host cells, which are membrane-bounded and contain DNA. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:pamgo_curators]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-223104-is_a: GO:0033648 ! host intracellular membrane-bounded organelle
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:223105:is_a: GO:0033655 ! host cell cytoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-223106-
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-223133-id: GO:0033655
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:223134:name: host cell cytoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-223135-namespace: cellular_component
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-223139-subset: gosubset_prok
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:223140:synonym: "cytoplasm component" BROAD []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-223141-is_a: GO:0033646 ! host intracellular part
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-224534-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:224535:def: "A region in the lower half of some cells formed from extensive infoldings of the basal plasma membrane; includes cytoplasm adjacent to the infolded membrane." [GOC:mah, GOC:sart, PMID:11640882]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-224536-is_a: GO:0044464 ! cell part
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-230533-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:230534:def: "Any process that decreases the frequency, rate or extent of the formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane, by the fusion of the plasma membranes of two or more individual cells." [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-230535-is_a: GO:0048523 ! negative regulation of cellular process
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-230783-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:230784:def: "The process in which cells digest parts of their own cytoplasm in response to the accumulation of misfolded proteins in the endoplasmic reticulum." [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-230785-synonym: "autophagy in response to endoplasmic reticulum overload" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-231563-def: "OBSOLETE. Any process in which a ligand-bound hormone receptor acts in the nucleus to modulate the frequency, rate or extent of transcription from an RNA polymerase II promoter." [GO_REF:0000021, GOC:mah, GOC:mh]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:231564:comment: This term was added by GO_REF:0000021. This term was made obsolete because it is unclear whether the term represents the action of the receptor or the entire process of transcription regulation. The term 'nuclear hormone receptor' is also misleading since many of these receptors reside in the cytoplasm until they are bound by a ligand.
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-231565-is_obsolete: true
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-233279-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:233280:def: "A multisubunit proteasome complex that localizes in the cytoplasm as dot-like structures when cells are in a quiescent state." [GOC:rb, PMID:18504300]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-233281-synonym: "PSG" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-233310-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:233311:def: "A protein complex found in the cytoplasm that binds the 5' cap structure of an mRNA, and typically consists of the cap-binding protein eIF4E, the adaptor protein eIF4G, and a multi-factor complex comprising eIF1, eIF2, eIF3 and eIF5. This complex mediates recruitment of the 40S subunit to mRNA." [PMID:16405910]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-233312-is_a: GO:0034518 ! RNA cap binding complex
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-238267-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:238268:def: "The directed movement of a pre-mRNA splicing factor from the cytoplasm into the nucleus, across the nuclear membrane." [GOC:bf]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:238269:synonym: "splicing factor protein transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-238270-synonym: "splicing factor protein-nucleus import" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-238694-is_a: GO:0034708 ! methyltransferase complex
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:238695:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-238696-
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-239480-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:239481:def: "The first nine mitotic division cycles of the insect embryo, during which the dividing nuclei lie deep in the interior of the egg and divide nearly synchronously. This is the first phase of the syncytial period where nuclei divide in a common cytoplasm without cytokinesis." [ISBN:0879694238]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-239482-is_a: GO:0033301 ! cell cycle comprising mitosis without cytokinesis
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-239488-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:239489:def: "Mitotic division cycles 10 to 13 of the insect embryo. This is the second phase of the syncytial period where nuclei divide in a common cytoplasm without cytokinesis. The majority of migrating nuclei reach the embryo surface during cycle 10, after which they divide less synchronously than before, and the syncytial blastoderm cycles lengthen progressively." [ISBN:0879694238]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-239490-is_a: GO:0033301 ! cell cycle comprising mitosis without cytokinesis
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-239921-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:239922:def: "A long, thin, polarized cell projection that contains actin and can extend for distances many times the diameter of the cell. Cytonemes represent extensions of cell cytoplasm and typically have a diameter of approximately 0.2um." [PMID:10367889, PMID:10675901]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-239923-subset: goslim_pir
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-240388-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:240389:def: "Transport of pre-microRNAs (pre-miRNAs) from the nucleus to the cytoplasm. Pre-miRNAs are a ~60-70 nucleotide stem loop intermediate in miRNA production, produced by the nuclear cleavage of a primary miRNA (pri-mRNA) transcript. Pre-miRNAs are transported from the nucleus to the cytoplasm where further cleavage occurs to produce a mature miRNA product." [GOC:sl, PMID:14744438]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-240390-synonym: "pre-microRNA export from cell nucleus" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-241914-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:241915:def: "The directed movement of a catenin protein from the cytoplasm into the nucleus." [GOC:BHF]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-241916-comment: Note that 'translocation' is sometimes used in the literature to refer to the entire process of protein import into the nucleus, but in GO refers specifically to the step in which a cargo-carrier protein complex moves through the nuclear pore complex.
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-241925-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:241926:def: "Any process that modulates the rate, frequency or extent of the directed movement of a catenin protein from the cytoplasm into the nucleus." [GOC:BHF]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-241927-synonym: "regulation of catenin protein nuclear translocation" NARROW [GOC:mah]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-241938-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:241939:def: "Any process that increases the rate, frequency or extent of the directed movement of a catenin protein from the cytoplasm into the nucleus." [GOC:BHF]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-241940-synonym: "positive regulation of catenin protein nuclear translocation" NARROW [GOC:mah]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-241952-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:241953:def: "Any process that decreases the rate, frequency or extent of the directed movement of a catenin protein from the cytoplasm into the nucleus." [GOC:BHF]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-241954-synonym: "negative regulation of catenin protein nuclear translocation" NARROW [GOC:mah]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-245511-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:245512:def: "The directed movement of tRNA from the cytoplasm to the nucleus." [GOC:vw, PMID:20032305]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-245513-synonym: "retrograde tRNA transport into nucleus" EXACT [GOC:vw, PMID:20032305]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-245925-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:245926:def: "The chemical reactions and pathways occurring in the cytoplasm and resulting in the breakdown of a ribosomal RNA (rRNA) molecule, initiated by the enzymatic addition of a sequence of adenylyl residues (polyadenylation) at the 3' end the target rRNA truncated degradation intermediate." [PMID:20368444]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-245927-synonym: "cytoplasmic poly(A)-dependent rRNA catabolic process" RELATED [GOC:vw]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-247038-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:247039:def: "The process in which the developmental fate of a cell becomes restricted such that it will develop into a eosinophil cell. A eosinophil is any of the immature or mature forms of a granular leukocyte with a nucleus that usually has two lobes connected by one or more slender threads of chromatin, and cytoplasm containing coarse, round granules that are uniform in size and which can be stained by the dye eosin." [CL:0000771, GOC:BHF, GOC:vk]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-247040-synonym: "eosinophil cell fate commitment" EXACT [GOC:bf]
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-247885-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:247886:def: "The directed movement of RNA from the cytoplasm into a mitochondrion." [GOC:ans, PMID:20691904]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-247887-synonym: "cytoplasmic RNA import into mitochondrion" NARROW [GOC:ans]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-247897-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:247898:def: "The directed movement of rRNA, ribosomal ribonucleic acid, from the cytoplasm into a mitochondrion." [GOC:ans, PMID:20691904]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-247899-synonym: "cytoplasmic rRNA import into mitochondrion" NARROW [GOC:ans]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-248748-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:248749:def: "The process in which a relatively unspecialized cell acquires the specialized features of a tendon cell. Tendon cell are elongated fibrocytes in which the cytoplasm is stretched between the collagen fibres of the tendon. Tendon cells have a central cell nucleus with a prominent nucleolus, a well-developed rough endoplasmic reticulum, and are responsible for synthesis and turnover of tendon fibres and ground substance." [CL:0000388, GOC:yaf, PMID:21412429]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-248750-synonym: "muscle attachment cell differentiation" EXACT [CL:0000388]
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-248943-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:248944:def: "A body present in the cytoplasm of some dinoflagellates, which is the source of bioluminescence; emits light on acidification in the presence of oxygen." [GOC:mag, PMID:4501583, PMID:5642469]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-248945-is_a: GO:0044444 ! cytoplasmic part
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-249891-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:249892:def: "Advancement of the cleavage furrow from the outside of the cell inward towards the center of the cell. The cleavage furrow acts as a 'purse string' which draws tight to separate daughter cells during cytokinesis and partition the cytoplasm between the two daughter cells. The furrow ingresses until a cytoplasmic bridge is formed." [PMID:15811947, PMID:20687468]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-249893-comment: Consider also annotating to 'contractile ring contraction involved in cell cycle cytokinesis ; GO:0000916'.
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-251051-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:251052:def: "A prolongation or process extending from a muscle cell. A muscle cell is a mature contractile cell, commonly known as a myocyte. This cell has as part of its cytoplasm myofibrils organized in various patterns." [CL:0000187, GOC:kmv, PMID:15930100, PMID:22464329]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-251053-synonym: "muscle arm" NARROW [GOC:kmv]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-251875-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:251876:def: "A multiprotein ATPase complex involved in the release of polyubiquitinated proteins, including those damaged by oxidative stress, from the outer mitochondria membrane into the cytoplasm where they are presented to the proteasome for proteolysis, a process also referred to as mitochondria-associated degradation (MAD). In budding yeast, this complex includes Cdc48p, Npl4p and Vms1p." [GOC:rn, PMID:21070972, PMID:21936843]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-251877-synonym: "Cdc48p-Npl4p-Vms1p complex" EXACT [GOC:rn]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-252014-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:252015:def: "Any process that activates or increases the frequency, rate or extent of directed movement of proteins from the nucleus into the cytoplasm in response to deprivation of glucose." [GOC:al, PMID:3541942]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-252016-is_a: GO:0042149 ! cellular response to glucose starvation
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-252055-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:252056:def: "Any process that activates or increases the frequency, rate or extent of the movement of a transcription factor from the cytoplasm to the nucleus under conditions of oxidative stress." [GOC:al, PMID:9585505]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-252057-synonym: "positive regulation of transcription factor import into nucleus in response to hydrogen peroxide" RELATED [GOC:al]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-256245-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:256246:def: "Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of movement of mRNA from the nucleus to the cytoplasm in the host organism." [GOC:bf, GOC:sp, UniProtKB-KW:KW-1099, VZ:902]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-256247-subset: virus_checked
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-257913-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:257914:def: "The uptake of a virus into a host cell that begins by invagination of the host cell plasma membrane to form an endosome containing the virus within the host cell, and ends when the viral nucleic acid is released into the host cytoplasm when the viral membrane fuses with the host endosome membrane." [GOC:bf, UniProtKB-KW:KW-1170, VZ:992]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-257915-synonym: "fusion of virus membrane with host endosomal membrane" EXACT [UniProtKB-KW:KW-1170, VZ:992]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-257925-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:257926:def: "The process of viral dissemination within an infected host organism where infectious virion particles are passed from infected to uninfected host cells via plasmodesmata. Plasmodesmata is a fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell." [UniProtKB-KW:KW-0916, VZ:1018]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-257927-xref: VZ:1018 "Viral movement protein"
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-258304-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:258305:def: "Any process that modulates the frequency, rate or extent of gene expression; the process is mitotically or meiotically heritable, or is stably self-propagated in the cytoplasm of a resting cell, and does not entail a change in DNA sequence." [PMID:10521337, PMID:11498582]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-258306-subset: goslim_plant
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-258400-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:258401:def: "The cell cycle process in which two small cells are generated, as byproducts destined to degenerate, as a result of the first and second meiotic divisions of a primary oocyte during its development to a mature ovum. One polar body is formed in the first division of meiosis and the other in the second division; at each division, the cytoplasm divides unequally, so that the polar body is of much smaller size than the developing oocyte. At the second division in which a polar body is formed, the polar body and the developing oocyte each contain a haploid set of chromosomes." [GOC:ems, ISBN:0198506732]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-258402-is_a: GO:0033206 ! meiotic cytokinesis
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-261492-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:261493:def: "A protein complex that contains two proteins (know in several organisms, including Drosophila, as NXF1 and NXF2) and is required for the export of the majority of mRNAs from the nucleus to the cytoplasm; localized in the nucleoplasm and at both the nucleoplasmic and cytoplasmic faces of the nuclear pore complex; shuttles between the nucleus and the cytoplasm." [PMID:11780633]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-261494-synonym: "Mex67-Mtr2 complex" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-261497-is_a: GO:0043234 ! protein complex
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:261498:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-261499-
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-261853-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:261854:def: "Any process that modulates the frequency, rate or extent of movement of proteins from the cytoplasm to the nucleus." [GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-261855-synonym: "regulation of protein import into cell nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:261856:synonym: "regulation of protein transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-261857-synonym: "regulation of protein-nucleus import" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-261868-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:261869:def: "Any process that activates or increases the frequency, rate or extent of movement of proteins from the cytoplasm into the nucleus." [GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-261870-synonym: "activation of protein import into nucleus" NARROW []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-261871-synonym: "positive regulation of protein import into cell nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:261872:synonym: "positive regulation of protein transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-261873-synonym: "positive regulation of protein-nucleus import" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-261888-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:261889:def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the movement of proteins from the cytoplasm into the nucleus." [GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-261890-synonym: "down regulation of protein import into nucleus" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-261894-synonym: "negative regulation of protein import into cell nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:261895:synonym: "negative regulation of protein transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-261896-synonym: "negative regulation of protein-nucleus import" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-262362-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:262363:def: "Any process that modulates the frequency, rate or extent of the transfer of NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters, from the cytoplasm into the nucleus, across the nuclear membrane." [GOC:jl, ISBN:0198506732]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-262364-synonym: "regulation of NF-kappaB import into cell nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:262365:synonym: "regulation of NF-kappaB transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-262366-synonym: "regulation of NF-kappaB-nucleus import" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-262376-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:262377:def: "Any process that activates or increases the frequency, rate or extent of transfer of NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters, from the cytoplasm into the nucleus, across the nuclear membrane." [GOC:jl, ISBN:0198506732]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-262378-synonym: "activation of NF-kappaB import into nucleus" NARROW []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-262379-synonym: "positive regulation of NF-kappaB import into cell nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:262380:synonym: "positive regulation of NF-kappaB transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-262381-synonym: "positive regulation of NF-kappaB-nucleus import" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-262395-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:262396:def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the transfer of NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters, from the cytoplasm into the nucleus, across the nuclear membrane." [GOC:jl, ISBN:0198506732]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-262397-synonym: "down regulation of NF-kappaB import into nucleus" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-262401-synonym: "negative regulation of NF-kappaB import into cell nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:262402:synonym: "negative regulation of NF-kappaB transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-262403-synonym: "negative regulation of NF-kappaB-nucleus import" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-262413-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:262414:def: "The directed movement of NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters, from the cytoplasm into the nucleus, across the nuclear membrane." [GOC:jl, ISBN:0198506732]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-262415-synonym: "NF-kappaB import into cell nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-262416-synonym: "NF-kappaB protein-nucleus import" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:262417:synonym: "NF-kappaB transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-262418-synonym: "NF-kappaB-nucleus import" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-269564-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:269565:def: "Any process that modulates the frequency, rate or extent of the movement of a transcription factor from the cytoplasm to the nucleus." [GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-269566-synonym: "regulation of transcription factor import into cell nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:269567:synonym: "regulation of transcription factor transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-269568-synonym: "regulation of transcription factor-nucleus import" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-269577-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:269578:def: "The directed movement of a transcription factor from the cytoplasm to the nucleus." [GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-269579-synonym: "transcription factor import into cell nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:269580:synonym: "transcription factor transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-269581-synonym: "transcription factor-nucleus import" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-269587-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:269588:def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the movement of a transcription factor from the cytoplasm to the nucleus." [GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-269589-synonym: "down regulation of transcription factor import into nucleus" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-269593-synonym: "negative regulation of transcription factor import into cell nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:269594:synonym: "negative regulation of transcription factor transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-269595-synonym: "negative regulation of transcription factor-nucleus import" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-269605-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:269606:def: "Any process that activates or increases the frequency, rate or extent of the movement of a transcription factor from the cytoplasm to the nucleus." [GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-269607-synonym: "activation of transcription factor import into nucleus" NARROW []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-269608-synonym: "positive regulation of transcription factor import into cell nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:269609:synonym: "positive regulation of transcription factor transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-269610-synonym: "positive regulation of transcription factor-nucleus import" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-271756-alt_id: GO:0043192
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:271757:def: "A complex for the transport of metabolites into and out of the cell, typically comprised of four domains; two membrane-associated domains and two ATP-binding domains at the intracellular face of the membrane, that form a central pore through the plasma membrane. Each of the four core domains may be encoded as a separate polypeptide or the domains can be fused in any one of a number of ways into multidomain polypeptides. In Bacteria and Archaebacteria, ABC transporters also include substrate binding proteins to bind substrate external to the cytoplasm and deliver it to the transporter." [GOC:jl, GOC:mtg_sensu, PMID:11421269, PMID:15111107]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-271758-subset: goslim_metagenomics
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-272019-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:272020:def: "Non-compact myelin located adjacent to the nodes of Ranvier in a myelin segment. These non-compact regions include cytoplasm from the cell responsible for synthesizing the myelin. Lateral loops are found in the paranodal region adjacent to the nodes of Ranvier, while Schmidt-Lantermann clefts are analogous structures found within the compact myelin internode." [GOC:dgh]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-272021-synonym: "oligodendrocyte paranodal termination" RELATED [NIF_Subcellular:sao1354781919]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-272031-alt_id: GO:0044287
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:272032:def: "Regions within compact myelin in which the cytoplasmic faces of the enveloping myelin sheath are not tightly juxtaposed, and include cytoplasm from the cell responsible for making the myelin. Schmidt-Lanterman incisures occur in the compact myelin internode, while lateral loops are analogous structures found in the paranodal region adjacent to the nodes of Ranvier." [GOC:dgh]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-272033-synonym: "Schmidt-Lanterman cleft" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-272217-is_a: GO:0043234 ! protein complex
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:272218:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-272219-
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-275896-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:275897:def: "The creation of two or more plastids by division of one plastid. A plastid is any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA." [GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-275898-is_a: GO:0048285 ! organelle fission
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-276777-is_a: GO:0033648 ! host intracellular membrane-bounded organelle
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:276778:is_a: GO:0033655 ! host cell cytoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-276779-
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-281627-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:281628:def: "A highly specialized structure unique to microsporidia that is required for host cell invasion. In the spore, the polar tube is connected at the anterior end, and then coils around the sporoplasm. Upon appropriate environmental stimulation, the polar tube rapidly discharges out of the spore, pierces a cell membrane and serves as a conduit for sporoplasm passage into the new host cell." [GOC:mf, PMID:12076771, PMID:9723921]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-281629-is_a: GO:0044464 ! cell part
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-281636-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:281637:def: "The complex infective apparatus corresponding to the central mass of cytoplasm within a spore that is injected into a host cell by various parasitic microorganisms." [GOC:mf, PMID:12076771, PMID:16004371, PMID:9723921]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-281638-is_a: GO:0044424 ! intracellular part
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282324-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:282325:def: "A small pit, depression, or invagination, such as any of the minute pits or incuppings of the host cell membrane formed during pinocytosis, that communicates with the outside of a host cell and extends inward, indenting the host cytoplasm and the host cell membrane. Such caveolae may be pinched off to form free vesicles within the host cytoplasm. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:rph]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282326-is_a: GO:0033643 ! host cell part
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282364-def: "A membranous cellular structure within the host cell that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the host plasma membrane. In eukaryotic host cells they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation." [GOC:rph]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:282365:is_a: GO:0033655 ! host cell cytoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282366-created_by: jane
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282374-is_a: GO:0033644 ! host cell membrane
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:282375:is_a: GO:0033655 ! host cell cytoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282376-relationship: part_of GO:0044159 ! host thylakoid
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282383-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:282384:def: "A vesicle formed of membrane or protein, found in the cytoplasm of a host cell." [GOC:rph]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282385-is_a: GO:0033648 ! host intracellular membrane-bounded organelle
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:282386:is_a: GO:0033655 ! host cell cytoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282387-created_by: jane
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282395-is_a: GO:0033644 ! host cell membrane
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:282396:is_a: GO:0033655 ! host cell cytoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282397-relationship: part_of GO:0044161 ! host cell cytoplasmic vesicle
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282413-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:282414:def: "The part of the host cell cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes." [GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282415-subset: gosubset_prok
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282416-synonym: "host cytosol" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:282417:is_a: GO:0033655 ! host cell cytoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282418-created_by: jane
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282424-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:282425:def: "The irregular network of unit membranes, visible only by electron microscopy, that occurs in the host cell cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The host ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached)." [GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282426-subset: gosubset_prok
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282428-is_a: GO:0033648 ! host intracellular membrane-bounded organelle
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:282429:is_a: GO:0033655 ! host cell cytoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282430-created_by: jane
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282439-synonym: "host endoplasmic reticulum lumen" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:282440:is_a: GO:0033655 ! host cell cytoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282441-relationship: part_of GO:0044165 ! host cell endoplasmic reticulum
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282461-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:282462:def: "The irregular network of unit membranes, visible only by electron microscopy, that occurs in the host cell cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The host rough ER has ribosomes adhering to the outer surface." [GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282463-subset: gosubset_prok
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282484-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:282485:def: "The irregular network of unit membranes, visible only by electron microscopy, that occurs in the host cell cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The host smooth ER has no ribosomes adhering to the outer surface." [GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282486-subset: gosubset_prok
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282512-is_a: GO:0033648 ! host intracellular membrane-bounded organelle
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:282513:is_a: GO:0033655 ! host cell cytoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282514-created_by: jane
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282538-is_a: GO:0033648 ! host intracellular membrane-bounded organelle
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:282539:is_a: GO:0033655 ! host cell cytoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282540-created_by: jane
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282571-synonym: "host Golgi apparatus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:282572:is_a: GO:0033655 ! host cell cytoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282573-created_by: jane
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282668-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:282669:def: "Any particle of coalesced lipids in the cytoplasm of a host cell. May include associated proteins." [GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282670-subset: gosubset_prok
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:282671:is_a: GO:0033655 ! host cell cytoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282672-created_by: jane
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282681-is_a: GO:0033648 ! host intracellular membrane-bounded organelle
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:282682:is_a: GO:0033655 ! host cell cytoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282683-created_by: jane
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282715-subset: gosubset_prok
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:282716:is_a: GO:0033655 ! host cell cytoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-282717-relationship: part_of GO:0033650 ! host cell mitochondrion
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-283019-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:283020:def: "A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one host cell to that of an adjacent host cell." [GOC:rph]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-283021-is_a: GO:0044156 ! host cell junction
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-283028-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:283029:def: "The host cell cytoplasm situated near, or occurring around, the host nucleus." [GOC:rph]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:283030:is_a: GO:0033655 ! host cell cytoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-283031-created_by: jane
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-284870-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:284871:def: "The directed movement of a RNA polymerase II core complex from the cytoplasm to the nucleus." [GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-284872-synonym: "DNA-directed RNA polymerase II core complex import into nucleus" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-285445-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:285446:def: "Any constituent part of a mitochondrion, a semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration." [GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-285447-comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-285486-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:285487:def: "Any constituent part of the endoplasmic reticulum, the irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae." [GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-285488-comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-285500-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:285501:def: "Any constituent part of cytoplasmic vesicle, a vesicle formed of membrane or protein, found in the cytoplasm of a cell." [GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-285502-comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-285526-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:285527:def: "Any constituent part of a plastid, a member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid." [GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-285528-comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-285648-subset: gosubset_prok
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:285649:synonym: "cytoplasm component" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-285650-is_a: GO:0044424 ! intracellular part
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-285658-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:285659:def: "Any constituent part of cytosol, that part of the cytoplasm that does not contain membranous or particulate subcellular components." [GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-285660-comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-285739-id: GO:0044451
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:285740:name: nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-285741-namespace: cellular_component
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-288311-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:288312:def: "Injection by a non-enveloped virus of their genome into the host cytoplasm through creation of a pore or channel in the host membrane or cell envelope. This is usually mediated by a viral pore-forming peptide associated with the viral capsid. In phages the genome is delivered into the host cell through a genome delivery apparatus located at one of the viral vertices and, for tailed bacteriophages, through the entire tail which in some phages is contractile." [GOC:jl, VZ:979]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-288313-synonym: "pore-mediated penetration of viral genome into host cell" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-295115-id: GO:0045451
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:295116:name: pole plasm oskar mRNA localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-295117-namespace: biological_process
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-295119-synonym: "establishment and maintenance of oskar mRNA localization in pole plasm" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:295120:synonym: "establishment and maintenance of pole plasm oskar mRNA localization" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:295121:synonym: "oocyte pole plasm oskar mRNA localization" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:295122:synonym: "pole plasm oskar mRNA localisation" EXACT [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:295123:is_a: GO:0019094 ! pole plasm mRNA localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-295124-
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-295591-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:295592:def: "Differentiated cytoplasm associated with a pole (animal, vegetal, anterior, or posterior) of an oocyte, egg or early embryo." [GOC:kmv, PMID:17113380]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-295593-synonym: "germ plasm" NARROW []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-300827-id: GO:0045855
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:300828:name: negative regulation of pole plasm oskar mRNA localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-300829-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-300830-def: "Any process that stops, prevents, or reduces the frequency, rate or extent of a process in which oskar mRNA is transported to, or maintained in, the oocyte pole plasm." [GOC:go_curators]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:300831:synonym: "down regulation of pole plasm oskar mRNA localization" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:300832:synonym: "down-regulation of pole plasm oskar mRNA localization" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:300833:synonym: "downregulation of pole plasm oskar mRNA localization" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:300834:synonym: "inhibition of pole plasm oskar mRNA localization" NARROW []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:300835:synonym: "negative regulation of oocyte pole plasm oskar mRNA localization" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:300836:synonym: "negative regulation of pole plasm oskar mRNA localisation" EXACT [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:300837:is_a: GO:0007317 ! regulation of pole plasm oskar mRNA localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-300838-is_a: GO:0048523 ! negative regulation of cellular process
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-300840-intersection_of: GO:0065007 ! biological regulation
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:300841:intersection_of: negatively_regulates GO:0045451 ! pole plasm oskar mRNA localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:300842:relationship: negatively_regulates GO:0045451 ! pole plasm oskar mRNA localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-300843-
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-300845-id: GO:0045856
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:300846:name: positive regulation of pole plasm oskar mRNA localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-300847-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-300848-def: "Any process that activates or increases the frequency, rate or extent of the process in which oskar mRNA is transported to, or maintained in, the oocyte pole plasm." [GOC:go_curators]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:300849:synonym: "activation of pole plasm oskar mRNA localization" NARROW []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:300850:synonym: "positive regulation of oocyte pole plasm oskar mRNA localization" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:300851:synonym: "positive regulation of pole plasm oskar mRNA localisation" EXACT [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:300852:synonym: "stimulation of pole plasm oskar mRNA localization" NARROW []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:300853:synonym: "up regulation of pole plasm oskar mRNA localization" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:300854:synonym: "up-regulation of pole plasm oskar mRNA localization" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:300855:synonym: "upregulation of pole plasm oskar mRNA localization" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:300856:is_a: GO:0007317 ! regulation of pole plasm oskar mRNA localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-300857-is_a: GO:0048522 ! positive regulation of cellular process
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-300859-intersection_of: GO:0065007 ! biological regulation
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:300860:intersection_of: positively_regulates GO:0045451 ! pole plasm oskar mRNA localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:300861:relationship: positively_regulates GO:0045451 ! pole plasm oskar mRNA localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-300862-
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-310658-id: GO:0046594
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:310659:name: maintenance of pole plasm mRNA location
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-310660-namespace: biological_process
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-310662-def: "The process of maintaining mRNA in a specific location in the oocyte pole plasm. An example of this process is found in Drosophila melanogaster." [GOC:bf, GOC:dph, GOC:tb]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:310663:synonym: "maintenance of oocyte pole plasm mRNA localization" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:310664:synonym: "maintenance of pole plasm mRNA localization" RELATED [GOC:dph, GOC:tb]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-310665-is_a: GO:0051237 ! maintenance of RNA location
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:310666:relationship: part_of GO:0019094 ! pole plasm mRNA localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-310667-
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-310669-id: GO:0046595
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:310670:name: establishment of pole plasm mRNA localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-310671-namespace: biological_process
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-310673-def: "Any process that results in the directed movement of mRNA to the oocyte pole plasm." [GOC:bf]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:310674:synonym: "establishment of oocyte pole plasm mRNA localization" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:310675:synonym: "establishment of pole plasm mRNA localisation" EXACT [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-310676-is_a: GO:0044699 ! single-organism process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-310677-is_a: GO:0051236 ! establishment of RNA localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:310678:relationship: part_of GO:0019094 ! pole plasm mRNA localization
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-310679-
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-311831-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:311832:def: "An apical plasma membrane part that forms a narrow enfolded luminal membrane channel, lined with numerous microvilli, that appears to extend into the cytoplasm of the cell. A specialized network of intracellular canaliculi is a characteristic feature of parietal cells of the gastric mucosa in vertebrates." [GOC:mah, ISBN:0721662544, PMID:10700045]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-311833-is_a: GO:0044459 ! plasma membrane part
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-312348-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:312349:def: "The directed movement of viral capsid proteins within the cytoplasm of the host cell." [ISBN:0781718325, PMID:11581394]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-312350-synonym: "cytoplasmic viral capsid transport" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-312754-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:312755:def: "The directed movement of intronless viral mRNA from the host nucleus to the cytoplasm for translation." [PMID:11598019]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-312756-synonym: "intronless viral mRNA export from host cell nucleus" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-312791-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:312792:def: "The process of moving the (often) incomplete virion to the cell surface in order to be released from the cell. Egress can involve travel through the endoplasmic reticulum or cytoplasm and will often include final maturation stages of the virion, but it occurs entirely within the cell." [GOC:rh1, ISBN:0781718325]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-312793-synonym: "movement of virus within host cell" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-313105-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:313106:def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of substances between the cytoplasm and the nucleus." [GOC:bf]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-313107-synonym: "down regulation of nucleocytoplasmic transport" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-313192-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:313193:def: "Any process that modulates the frequency, rate or extent of movement of RNA from the cytoplasm to the nucleus." [GOC:bf]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-313194-synonym: "regulation of RNA import into cell nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:313195:synonym: "regulation of RNA transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-313196-synonym: "regulation of RNA-nucleus import" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-313206-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:313207:def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the movement of RNA from the cytoplasm into the nucleus." [GOC:bf]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-313208-synonym: "down regulation of RNA import into nucleus" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-313212-synonym: "negative regulation of RNA import into cell nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:313213:synonym: "negative regulation of RNA transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-313214-synonym: "negative regulation of RNA-nucleus import" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-313225-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:313226:def: "Any process that activates or increases the frequency, rate or extent of movement of RNA from the cytoplasm into the nucleus." [GOC:bf]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-313227-synonym: "activation of RNA import into nucleus" NARROW []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-313228-synonym: "positive regulation of RNA import into cell nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:313229:synonym: "positive regulation of RNA transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-313230-synonym: "positive regulation of RNA-nucleus import" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-334131-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:334132:def: "Cytoplasm situated near, or occurring around, the nucleus." [GOC:jid]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-334133-comment: Note that this term should not be confused with the cellular component term 'nuclear membrane lumen ; GO:0005641', which has the synonym 'perinuclear space'.
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-357132-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:357133:def: "The cell cycle phase which follows anaphase during M phase of mitosis and meiosis and during which the chromosomes arrive at the poles of the cell and the division of the cytoplasm starts." [GOC:mtg_cell_cycle]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-357134-comment: Note that this term should not be used for direct annotation. If you are trying to make an annotation to x phase, it is likely that the correct process is 'regulation of x/y phase transition'.
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-359267-def: "Any process that increases the concentration of calcium ions in the cytosol that occurs as part of a PLC-activating G-protein coupled receptor signaling pathway. G-protein-activated PLC hydrolyses phosphatidylinositol-bisphosphate (PIP2) to release diacylglycerol (DAG) and inositol trisphosphate (IP3). IP3 then binds to calcium release channels in the endoplasmic reticulum (ER) to trigger calcium ion release into the cytosol." [GOC:ai, GOC:signaling]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:359268:synonym: "elevation of calcium ion concentration in cytoplasm during G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)" BROAD []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-359269-synonym: "elevation of calcium ion concentration in cytosol during G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)" RELATED []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-359824-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:359825:def: "The directed movement of NFAT (nuclear factor of activated T cells) proteins, a family of transcription factors, from the cytoplasm into the nucleus. NFAT proteins are dephosphorylated in the cytoplasm by activated calcineurin, which leads to their translocation across the nuclear membrane." [PMID:11983154, PMID:15870113, PMID:15928679]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-359826-synonym: "NFAT protein import into cell nucleus" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-359828-synonym: "NFAT protein nucleus import" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:359829:synonym: "NFAT protein transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-359830-synonym: "NFAT protein-nucleus import" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-359836-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:359837:def: "Any process that modulates the frequency, rate or extent of the movement of an NFAT protein from the cytoplasm to the nucleus." [GOC:ai]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-359838-synonym: "regulation of NFAT protein import into cell nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:359839:synonym: "regulation of NFAT protein transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-359840-synonym: "regulation of NFAT protein-nucleus import" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-359849-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:359850:def: "Any process that activates or increases the frequency, rate or extent of the movement of an NFAT protein from the cytoplasm to the nucleus." [GOC:ai]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-359851-synonym: "activation of NFAT protein import into nucleus" NARROW []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-359852-synonym: "positive regulation of NFAT protein import into cell nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:359853:synonym: "positive regulation of NFAT protein transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-359854-synonym: "positive regulation of NFAT protein-nucleus import" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-359868-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:359869:def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the movement of an NFAT protein from the cytoplasm to the nucleus." [GOC:ai]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-359870-synonym: "down regulation of NFAT protein import into nucleus" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-359874-synonym: "negative regulation of NFAT protein import into cell nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:359875:synonym: "negative regulation of NFAT protein transport from cytoplasm to nucleus" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-359876-synonym: "negative regulation of NFAT protein-nucleus import" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-360165-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:360166:def: "Any process involved in the maintenance of an internal steady state of calcium ions within the cytoplasm of a cell or between mitochondria and their surroundings." [GOC:ai, GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-360167-synonym: "calcium ion homeostasis in mitochondria" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-377028-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:377029:def: "Organelle consisting of networks of 60nm tubules organized around the microtubule organizing centre in some cell types. They transport molecules (e.g., receptors, transporters, lipids) derived from endosomes, the Golgi apparatus, or the cytoplasm to the plasma membrane. Transported molecules may be recycled for reuse, or may be newly synthesized." [GOC:dph, GOC:jid, GOC:kmv, GOC:rph, PMID:10930469, PMID:15601896, PMID:16246101, PMID:21556374, PMID:21562044]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-377030-synonym: "endosome recycling compartment" RELATED [GOC:dph, PMID:12370264]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-378775-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:378776:def: "A process in which the extent of vascular smooth muscle contraction is reduced. Vascular smooth muscle relaxation is mediated via a decrease in the phosphorylation state of myosin light chain. This can be achieved by removal of calcium from the cytoplasm to the sarcoplasmic reticulum lumen through the action of Ca2+ ATPases leading to a decrease myosin light chain kinase activity, and through calcium-independent pathways leading to a increase in myosin light chain phosphatase activity." [GOC:dph, PMID:15867178, PMID:19996365]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-378777-synonym: "vascular smooth muscle relaxation" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-379337-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:379338:def: "The formation in a cell that has been targeted by a virus of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane, by the fusion of the plasma membranes of two or more individual cells." [GOC:dph]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-379339-is_a: GO:0060142 ! regulation of syncytium formation by plasma membrane fusion
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-379345-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:379346:def: "The process in which a virus increases the frequency, rate or extent of the formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane, by the fusion of the plasma membranes of two or more individual cells." [GOC:dph]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-379347-is_a: GO:0019054 ! modulation by virus of host process
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-379354-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:379355:def: "Any process that modulates the frequency, rate or extent of the formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane, by the fusion of the plasma membranes of two or more individual cells." [GOC:dph]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-379356-is_a: GO:0022603 ! regulation of anatomical structure morphogenesis
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-379366-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:379367:def: "Any process that increases the frequency, rate or extent of the formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane, by the fusion of the plasma membranes of two or more individual cells." [GOC:dph]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-379368-is_a: GO:0048522 ! positive regulation of cellular process
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-380870-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:380871:def: "Differentiated cytoplasm associated with a pole of an oocyte, egg or early embryo that will be inherited by the cells that will give rise to the germ line." [GOC:dph]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-380872-xref: Wikipedia:Germ_plasm
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-381902-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:381903:def: "Any process that modulates the rate, frequency or extent of SMAD protein import into the nucleus, i.e. the directed movement of a SMAD proteins from the cytoplasm into the nucleus. Pathway-restricted SMAD proteins and common-partner SMAD proteins are involved in the transforming growth factor beta receptor signaling pathways." [GOC:BHF, GOC:dph, GOC:tb]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-381904-synonym: "regulation of SMAD protein nuclear translocation" NARROW [GOC:mah]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-381914-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:381915:def: "Any process that increases the rate, frequency or extent of SMAD protein import into the nucleus, i.e. the directed movement of a SMAD proteins from the cytoplasm into the nucleus. Pathway-restricted SMAD proteins and common-partner SMAD proteins are involved in the transforming growth factor beta receptor signaling pathways." [GOC:BHF, GOC:dph, GOC:tb]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-381916-synonym: "positive regulation of SMAD protein nuclear translocation" NARROW [GOC:mah]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-381927-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:381928:def: "Any process that decreases the rate, frequency or extent of SMAD protein import into the nucleus, i.e. the directed movement of a SMAD proteins from the cytoplasm into the nucleus. Pathway-restricted SMAD proteins and common-partner SMAD proteins are involved in the transforming growth factor beta receptor signaling pathways." [GOC:BHF, GOC:dph, GOC:tb]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-381929-synonym: "negative regulation of SMAD protein nuclear translocation" NARROW [GOC:mah]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-382661-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:382662:def: "Any process that decreases the rate, frequency or extent of fertilization. Fertilization is the union of gametes of opposite sexes during the process of sexual reproduction to form a zygote. It involves the fusion of the gametic nuclei (karyogamy) and cytoplasm (plasmogamy)." [GOC:dph]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-382663-is_a: GO:2000242 ! negative regulation of reproductive process
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-383084-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:383085:def: "The process in which a relatively unspecialized cell acquires specialized features of a Type I pneumocyte. A type I pneumocyte is a flattened cell with greatly attenuated cytoplasm and a paucity of organelles." [GOC:dph, GOC:mtg_lung, ISBN:0721662544]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-383086-synonym: "membranous pneumocyte differentiation" EXACT [GOC:dph, ISBN:0721662544]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-383094-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:383095:def: "The process in which a relatively unspecialized cell acquires specialized features of a Type II pneumocyte. A Type II pneumocyte is a surfactant secreting cell that contains abundant cytoplasm containing numerous lipid-rich multilamellar bodies." [GOC:dph, GOC:mtg_lung, ISBN:0721662544]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-383096-synonym: "granular pneumocyte differentiation" RELATED [GOC:dph, ISBN:0721662544]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-392813-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:392814:def: "The developmental process pertaining to the progression of the optic chiasm from its initial formation to the mature structure. The process begins when the pathfinding of the axons of the developing optic nerve cause some axons to cross at the midline of the brain and ends when the axons are mature." [GOC:dph]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:392815:synonym: "optic chiasm development" EXACT [GOC:dph]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-392816-is_a: GO:0044767 ! single-organism developmental process
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-395763-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:395764:def: "An inclusion body located in the cytoplasm that consists of polyhydroxyalkanoate (PHA) molecules and associated proteins, surrounded by a phospholipid monolayer; the proteins include PHA synthase, PHA depolymerase and 3HB-oligomer hydroxylase, phasins (PhaPs), which are thought to be the major structural proteins of the membrane surrounding the inclusion, and the regulator of phasin expression PhaR." [GOC:mah, PMID:15762612]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-395765-subset: gosubset_prok
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-398154-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:398155:def: "The process in which a relatively unspecialized cell acquires specialized features of a lens fiber cell, any of the elongated, tightly packed cells that make up the bulk of the mature lens in the camera-type eye. The cytoplasm of a lens fiber cell is devoid of most intracellular organelles including the cell nucleus, and contains primarily crystallins, a group of water-soluble proteins expressed in vary large quantities." [GOC:mah, PMID:7693735]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-398156-synonym: "lens fibre cell differentiation" EXACT [GOC:mah]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-404289-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:404290:def: "The aggregation, arrangement and bonding together of a set of components to form a caveola. A caveola is a plasma membrane raft that forms a small pit, depression, or invagination that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane." [GOC:BHF, GOC:mah, GOC:vk, PMID:12633858]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-404291-synonym: "caveola formation" EXACT [GOC:mah]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-404404-is_a: GO:0043234 ! protein complex
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:404405:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-404406-relationship: part_of GO:0016591 ! DNA-directed RNA polymerase II, holoenzyme
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-404433-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:404434:def: "A protein complex that contains the transforming acidic coiled coil (TACC) protein and the TOG protein (Mia1p/Alp7p and Alp14, respectively, in fission yeast), and is involved in microtubule array remodeling as cells progress through the cell cycle. The TACC/TOG complex is conserved in eukaryotes, associates with microtubules, and shuttles between the nucleus and the cytoplasm during interphase." [GOC:mah, GOC:vw, PMID:19606211]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-404435-is_a: GO:0043234 ! protein complex
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-405531-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:405532:def: "A cytoskeletal structure composed of filamentous protein that forms beneath the membrane of many cells or organelles, in the plane of cell or organelle division. Ring contraction is associated with centripetal growth of the membrane that divides the cytoplasm of the two daughter cells or organelles." [GOC:mah, ISBN:0123645859, ISBN:0792354923, PMID:10791428, PMID:17913889]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-405533-synonym: "constriction ring" RELATED [GOC:mah]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-408170-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:408171:def: "A protein complex that consists of a homo- or heterodimer of members of a family of structurally related proteins that contain a conserved N-terminal region called the Rel homology domain (RHD). In the nucleus, NF-kappaB complexes act as transcription factors. In unstimulated cells, NF-kappaB dimers are sequestered in the cytoplasm by IkappaB monomers; signals that induce NF-kappaB activity cause degradation of IkappaB, allowing NF-kappaB dimers to translocate to the nucleus and induce gene expression." [ISBN:0849327946]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-408172-is_a: GO:0043234 ! protein complex
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-408263-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:408264:def: "The directed movement of a ribonucleoprotein complex from the cytoplasm to the nucleus." [GOC:BHF, GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-408265-synonym: "ribonucleoprotein complex import into cell nucleus" EXACT [GOC:mah]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-408267-synonym: "ribonucleoprotein complex targeting to nucleus" EXACT [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:408268:synonym: "ribonucleoprotein complex transport from cytoplasm to nucleus" EXACT [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-408269-synonym: "ribonucleoprotein import into nucleus" EXACT [GOC:rl]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-408356-is_a: GO:0043234 ! protein complex
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:408357:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-408358-created_by: midori
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-408367-is_a: GO:0043234 ! protein complex
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:408368:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-408369-created_by: midori
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-408378-is_a: GO:0043234 ! protein complex
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:408379:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-408380-created_by: midori
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-408389-is_a: GO:0043234 ! protein complex
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:408390:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-408391-created_by: midori
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-408400-is_a: GO:0043234 ! protein complex
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:408401:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-408402-created_by: midori
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-408411-is_a: GO:0043234 ! protein complex
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:408412:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-408413-created_by: midori
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-408422-is_a: GO:0043234 ! protein complex
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:408423:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-408424-created_by: midori
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-408433-is_a: GO:0043234 ! protein complex
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:408434:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-408435-created_by: midori
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-412363-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:412364:def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules by a mechanism that is mediated by DNA, is mitotically or meiotically heritable, or is stably self-propagated in the cytoplasm of a resting cell, and does not entail a change in DNA sequence." [GOC:mah, GOC:vw]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-412365-synonym: "DNA imprinting" EXACT [GOC:mah]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-412535-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:412536:def: "The directed movement from the nucleus to the cytoplasm of a tRNA that was previously exported to the cytoplasm and then imported back into the nucleus. The processes of primary tRNA export and secondary export (re-export) can be distinguished because in organisms in which tRNA splicing occurs in the cytoplasm, the export of a mature tRNA must occur by re-export." [GOC:mcc, PMID:17475781, PMID:20032305]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-412537-synonym: "tRNA reexport from nucleus" EXACT [GOC:mcc]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-413336-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:413337:def: "A ribonucleoprotein complex that is found in the cytoplasm of axons and dendrites, and transports translationally silenced mRNAs to dendritic synapses, where they are released and translated in response to specific exogenous stimuli." [GOC:BHF, GOC:go_curators, GOC:mah, PMID:19015237, PMID:20368989]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-413338-synonym: "neuronal RNA granule" NARROW []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-416015-is_a: GO:0043234 ! protein complex
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:416016:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-416017-created_by: midori
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-416037-is_a: GO:0043234 ! protein complex
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:416038:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-416039-created_by: midori
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-421582-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:421583:def: "Ascus cytoplasm that is not packaged into ascospores." [DOI:10.1016/S0953-7562(96)80057-8, GOC:mcc]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:421584:comment: Note that this term is an is_a child of 'cell part' because the epiplasm is extracellular to the spore (each of which is a cell) but within the ascus structure, and originated from cytoplasm.
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-421585-is_a: GO:0044464 ! cell part
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-423510-subset: gosubset_prok
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:423511:is_a: GO:0033655 ! host cell cytoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-423512-relationship: part_of GO:0044190 ! host cell mitochondrial envelope
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-423522-synonym: "host endosome lumen" EXACT [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:423523:is_a: GO:0033655 ! host cell cytoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-423524-relationship: part_of GO:0044174 ! host cell endosome
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-423594-def: "OBSOLETE. Any process in which a ligand-bound hormone receptor acts in the nucleus to stop, prevent, or reduce the frequency, rate or extent of transcription from an RNA polymerase II promoter." [GOC:mah]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:423595:comment: This term was made obsolete because it is unclear whether the term represents the action of the receptor or the entire process of transcription regulation. The term 'nuclear hormone receptor' is also misleading since many of these receptors reside in the cytoplasm until they are bound by a ligand.
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-423596-is_obsolete: true
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-423768-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:423769:def: "A membrane-bounded compartment that forms in the cytoplasm of virus-infected cells, in which virus assembly takes place." [GOC:BHF, PMID:20374631]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-423770-synonym: "viral assembly site" RELATED [GOC:BHF]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-423780-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:423781:def: "A membrane-bounded compartment that forms in the cytoplasm of the host cell, in which virus assembly takes place." [GOC:BHF, PMID:20374631]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-423782-synonym: "host cell viral assembly site" RELATED [GOC:BHF]
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-423784-is_a: GO:0033648 ! host intracellular membrane-bounded organelle
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:423785:is_a: GO:0033655 ! host cell cytoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-423786-created_by: midori
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-424601-synonym: "nucleoplasmic box H/ACA RNP pseudouridylase complex" EXACT [GOC:mah, GOC:vw, PMID:20227365]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:424602:is_a: GO:0044451 ! nucleoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-424603-is_a: GO:0072588 ! box H/ACA RNP complex
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-427011-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:427012:def: "The process in which the host cells digest parts of their own cytoplasm during interaction with its symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:pamgo_curators]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-427013-comment: Note that this term should be used to annotate gene products of host.
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-427321-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:427322:def: "The process in which cells digest parts of their own cytoplasm during a symbiotic interaction; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:pamgo_curators]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-427323-comment: Note that this term should be used to annotate gene products of the organism involved in this process.
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-427333-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:427334:def: "The process in which symbiont cells digest parts of their own cytoplasm during interaction with its host. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:pamgo_curators]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-427335-comment: Note that this term should be used to annotate gene products of symbiont.
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-427390-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:427391:def: "Any process in which the host organism modulates the frequency, rate or extent of receptor-mediated signal transduction in the symbiont. The receptor is defined as a protein on the cell membrane or within the cytoplasm or cell nucleus that binds to a specific molecule (a ligand) such as a neurotransmitter or a hormone or other substance, and initiates the cellular response to the ligand. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:pamgo_curators]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-427392-comment: Note that this term is used to annotate gene products of the host. To annotate symbiont gene products, consider the biological process term "modulation by symbiont of host receptor-mediated signal transduction ; GO:0075109".
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-427700-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:427701:def: "Any process in which the symbiont modulates the frequency, rate or extent of receptor-mediated signal transduction in the host organism. The receptor is defined as a protein on the cell membrane or within the cytoplasm or cell nucleus that binds to a specific molecule (a ligand) such as a neurotransmitter or a hormone or other substance, and initiates the cellular response to the ligand. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:pamgo_curators]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-427702-comment: Note that this term is used to annotate gene products of the symbiont. To annotate host gene products, consider the biological process term "modulation by host of symbiont receptor-mediated signal transduction ; GO:0075078".
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430098-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:430099:def: "The uptake of a virus into a host cell that begins when material is taken up into plasma membrane caveolae which then pinch off to form endocytic caveolar carriers containing the virus. The caveolar carriers then deliver their viral content to early endosomes, and ends when the viral nucleic acid is released into the host cytoplasm when the viral membrane fuses with the endosomal membrane." [GOC:jl, VZ:992]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430100-subset: virus_checked
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430110-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:430111:def: "The uptake of a virus into a host cell that begins when material is taken up into plasma membrane caveolae which then pinch off to form endocytic caveolar carriers containing the virus. The caveolar carriers then deliver their viral content to early endosomes, and the process ends when viral nucleic acid is released into the host cytoplasm by induction of endosome membrane permeabilization triggered by an interaction between the host membrane and a membrane-penetration protein associated with the capsid." [GOC:jl, VZ:985]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430112-subset: virus_checked
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430120-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:430121:def: "The uptake of a virus into a host cell that begins by invagination of the host cell plasma membrane to form a macropinosome containing the virus within the host cell, and ends when the viral nucleic acid is released into the host cytoplasm when the viral membrane fuses with the macropinosome membrane." [GOC:jl, VZ:992]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430122-subset: virus_checked
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430133-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:430134:def: "The uptake of a virus into a host cell that begins by invagination of the host cell plasma membrane to form a macropinosome containing the virus within the host cell. The process ends when the viral nucleic acid or viral particle is released into the host cytoplasm by induction of macropinosome membrane permeabilization triggered by an interaction between the host membrane and a membrane-penetration protein associated with the capsid." [GOC:jl, VZ:985]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430135-subset: virus_checked
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430207-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:430208:def: "The uptake of a virus into a host cell that begins by invagination of the host cell plasma membrane to form a macropinosome containing the virus within the host cell. The process ends when the viral nucleic acid or viral particle is released into the host cytoplasm by viral-induced lysis of the macropinosome." [GOC:jl, VZ:984]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430209-subset: virus_checked
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430242-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:430243:def: "The uptake of a virus into a host cell that begins when material is taken up into plasma membrane caveolae which then pinch off to form endocytic caveolar carriers containing the virus. The caveolar carriers then deliver their viral content to early endosomes, and the process ends when viral nucleic acid is released into the host cytoplasm by viral-induced lysis of the endosome." [GOC:jl, VZ:976]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430244-subset: virus_checked
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430252-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:430253:def: "The uptake of a virus into a host cell that begins when material is taken up into plasma membrane caveolae which then pinch off to form endocytic caveolar carriers containing the virus. The caveolar carriers then deliver their viral content to early endosomes, and the process ends when viral nucleic acid is released into the host cytoplasm by its injection through the endosome membrane." [GOC:jl, VZ:976]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430254-subset: virus_checked
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430262-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:430263:def: "The uptake of a virus into a host cell that begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicles containing the virus. The vesicle then delivers its viral content to early endosomes, and the process ends when viral nucleic acid is released into the host cytoplasm by viral-induced lysis of the endosome." [GOC:jl, VZ:957]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430264-subset: virus_checked
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430272-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:430273:def: "The uptake of a virus into a host cell that begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicles containing the virus. The vesicle then delivers its viral content to early endosomes, and ends when the viral nucleic acid is released into the host cytoplasm when the viral membrane fuses with the endosomal membrane." [GOC:jl, VZ:957]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430274-subset: virus_checked
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430284-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:430285:def: "The uptake of a virus into a host cell that begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicles containing the virus. The vesicle then delivers its viral content to early endosomes, and the process ends when viral nucleic acid is released into the host cytoplasm by induction of endosome membrane permeabilization triggered by an interaction between the host membrane and a membrane-penetration protein associated with the capsid." [GOC:jl, VZ:957]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430286-subset: virus_checked
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430294-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:430295:def: "The directed movement of the viral genome or viral particle within the host cell cytoplasm along host microtubules. Microtubule-dependent transport involves motor proteins like dynein and kinesin and is mostly used by viruses that target their genomes to the nucleus." [VZ:983]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430296-xref: VZ:983
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430304-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:430305:def: "The directed movement of the viral genome or viral particle within the host cell cytoplasm via the host's actin filaments. Actin-dependent transport is induced by viral proteins that interact with actin and/or host cell motor proteins like myosins or that promotes actin polymerization/depolymerization reactions." [UniProtKB-KW:KW-1178, VZ:991]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430306-xref: VZ:991 "Actin-dependent inwards viral transport"
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430418-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:430419:def: "A process by which a virus establishes a latent state within its host as an episome, where the viral genome remains silent in the cytoplasm or nucleus as a circular structure." [GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430420-synonym: "establishment of circular plasmid latency" EXACT []
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430430-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:430431:def: "A process by which a virus establishes a latent state within its host as an episome, where the viral genome remains silent in the cytoplasm or nucleus as linear structure." [GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430432-synonym: "establishment of latency as a linear plasmid" EXACT []
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430452-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:430453:def: "The uptake of a virus into a host cell that begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicles containing the virus. The vesicle then delivers its viral content to early endosomes, and the process ends when the viral nucleic acid is released into the host cytoplasm by its injection through the endosome membrane." [GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430454-comment: This term is pending obsoletion because it doesn't reflect a valid process.
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430481-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:430482:def: "A process by which a virus establishes a latent state within its host as an episome, where the viral genome remains silent in the cytoplasm or nucleus as a distinct genetic entity." [GOC:jl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-430483-synonym: "establishment as a plasmid prophage" NARROW []
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-432051-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:432052:def: "Any process that modulates the rate, frequency or extent of fertilization. Fertilization is the union of gametes of opposite sexes during the process of sexual reproduction to form a zygote. It involves the fusion of the gametic nuclei (karyogamy) and cytoplasm (plasmogamy)." [GOC:DHL, PMID:20478994]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-432053-is_a: GO:2000241 ! regulation of reproductive process
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-432724-synonym: "TVN" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:432725:is_a: GO:0033655 ! host cell cytoplasm part
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-432726-is_a: GO:0043264 ! extracellular non-membrane-bounded organelle
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-435005-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:435006:def: "A process in which the extent of muscle contraction is reduced. Muscle relaxation can involve a number of processes including the removal of calcium from the cytoplasm to the sarcoplasmic reticulum lumen through the action of Ca2+ ATPases. In some muscles, calcium-independent pathways also play a role in muscle relaxation by decreasing the phosphorylation state of myosin light chain." [GOC:rl, PMID:19996365]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-435007-is_a: GO:0003012 ! muscle system process
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-435014-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:435015:def: "A process in which the extent of skeletal muscle tissue contraction is reduced. Muscle relaxation involves the removal of calcium from the cytoplasm to the sarcoplasmic reticulum lumen through the action of Ca2+ ATPases." [GOC:rl]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-435016-is_a: GO:0090075 ! relaxation of muscle
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-441368-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:441369:def: "A protein complex that consists of two interferon regulatory proteins (IRFs); may be homodimeric or heterodimeric. The activation of a latent closed conformation of IRF in the cytoplasm is triggered by phosphorylation of Ser/Thr residues in a C-terminal region. Phosphorylation stimulates the C-terminal autoinhibitory domain to attain a highly extended conformation triggering dimerization through extensive contacts to a second subunit." [GOC:cna, PMID:20043992]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-441370-synonym: "IRF complex" EXACT []
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-442602-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:442603:def: "A fragment containing parts of a dying cell. Apoptotic bodies can be formed during the execution phase of the apoptotic process, when the cell's cytoskeleton breaks up and causes the membrane to bulge outward. These bulges may separate from the cell, taking a portion of cytoplasm with them, to become apoptotic bodies. These are then engulfed by phagocytic cells, and their components recycled." [GOC:mtg_apoptosis, http://en.wikipedia.org/wiki/Apoptosis, http://en.wikipedia.org/wiki/Bleb_(cell_biology)]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-442604-is_a: GO:0044421 ! extracellular region part
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-444405-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:444406:def: "A heterooligomeric protein complex that spans the bacterial periplasm and enables the secretion of adhesin proteins in Gram-negative bacteria. In Citrobacter rodentium, Salmonella enterica and Escherichia coli, the TAM complex consists of an Omp85-family protein, TamA, in the outer membrane and TamB in the inner membrane." [GOC:am, PMID:22466966]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-444407-synonym: "translocation and assembly module protein complex" EXACT []
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-445024-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:445025:def: "Cellular inclusion consisting of circular areas filled with fine slender filaments about 10 nanometers in diameter, delimited by a wall of varying complexity (either a single continuous membrane or a tubular network consisting of a fine filamentous material giving the wall a honeycomb appearance). Fibrillary inclusions are found in the cytoplasm of giant cells of Dieters in the lateral vestibular nucleus of the rat; similar structures have been described in the ventral cochlear nucleus, spinal cord, and substantia nigra." [NIF_Subcellular:sao967812059]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-445026-is_a: GO:0016234 ! inclusion body
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-445127-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:445128:def: "Intracellular mass of paired, helically wound protein filaments (also called PHF) lying in the cytoplasm of neuronal cell bodies and neuritic cell processes. Neurofibrillary tangles contain an abnormally phosphorylated form of a microtubule-associated protein, tau. The shape of these inclusions may resemble a flame or a star." [NIF_Subcellular:nlx_subcell_20090201, NIF_Subcellular:nlx_subcell_20090202, NIF_Subcellular:sao2409833926]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-445129-synonym: "flame-shaped neurofibrillary tangle" NARROW []
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-445406-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:445407:def: "Electron dense projection extending from the cytomatrix into the cytoplasm on which synaptic vesicles are tethered." [NIF_Subcellular:sao494258938, PMID:15381754]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-445408-synonym: "active zone dense projection" EXACT []
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-484041-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:484042:def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the movement of proteins from the cytoplasm into the nucleus, and that occurs as part of the mitotic cell cycle spindle assembly checkpoint. In S. cerevisiae, this process involves inhibition of the karyopherin/importin Kap121p (also known as Pse1p), which acts as the specific nuclear import receptor for several proteins, including Glc7p. Glc7p functions in opposition to key spindle assembly checkpoint protein Aurora kinase (Ipl1p)." [GOC:dgf, GOC:TermGenie, PMID:23177738]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-484043-synonym: "down regulation of protein import into nucleus involved in Mad2-dependent checkpoint" NARROW [GOC:TermGenie]
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-484063-synonym: "negative regulation of protein import into nucleus involved in negative regulation of mitotic metaphase/anaphase transition by spindle assembly checkpoint" EXACT [GOC:TermGenie]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:484064:synonym: "negative regulation of protein transport from cytoplasm to nucleus involved in Mad2-dependent checkpoint" NARROW [GOC:TermGenie]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:484065:synonym: "negative regulation of protein transport from cytoplasm to nucleus involved in mitotic cell cycle spindle assembly checkpoint" EXACT [GOC:TermGenie]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:484066:synonym: "negative regulation of protein transport from cytoplasm to nucleus involved in negative regulation of mitotic metaphase/anaphase transition by spindle assembly checkpoint" EXACT [GOC:TermGenie]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-484067-synonym: "negative regulation of protein-nucleus import involved in Mad2-dependent checkpoint" NARROW [GOC:TermGenie]
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-491081-namespace: biological_process
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:491082:def: "The directed movement of an RNA polymerase III complex from the cytoplasm to the nucleus." [GOC:mcc, PMID:23267056]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-491083-synonym: "DNA-directed RNA polymerase III complex import into nucleus" EXACT []
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-491467-namespace: cellular_component
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:491468:def: "Protein complex facilitating ATP-dependent maltose transport through inner cell membrane (periplasm to cytoplasm) in Gram-negative bacteria. In E. coli the system is composed of a periplasmic maltose-binding protein (MBP), two integral membrane proteins, MalF and MalG, and two copies of the cytoplasmic ATP-binding cassette MalK." [PMID:18033289]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-491469-synonym: "maltose ABC transporter complex" EXACT []
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emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-508987-def: "Any process that modulates the frequency, rate or extent of CVT pathway." [GOC:obol]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo:508988:synonym: "regulation of cytoplasm to vacuole targeting" EXACT [GOC:obol]
emboss-6.6.0+dfsg/emboss/data/OBO/go.obo-508989-synonym: "regulation of cytoplasm-to-vacuole targeting" EXACT [GOC:obol]
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emboss-6.6.0+dfsg/emboss/data/OBO/chebi.obo-4733-name: dicyclomine hydrochloride
emboss-6.6.0+dfsg/emboss/data/OBO/chebi.obo:4734:def: "The hydrochloride salt of dicyclomine. An anticholinergic, it is used to treat or prevent spasm in the muscles of the gastrointestinal tract, particularly that associated with irritable bowel syndrome." []
emboss-6.6.0+dfsg/emboss/data/OBO/chebi.obo-4735-synonym: "dicyclomine HCl" RELATED [ChemIDplus:]
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emboss-6.6.0+dfsg/emboss/data/OBO/chebi.obo-9603-name: aclidinium bromide
emboss-6.6.0+dfsg/emboss/data/OBO/chebi.obo:9604:def: "A quaternary ammonium salt that is the bromide salt of aclidinium. A muscarinic acetylcholine M3 receptor antagonist, for the long-term maintenance treatment of bronchospasm associated with chronic obstructive pulmonary disease (COPD)." []
emboss-6.6.0+dfsg/emboss/data/OBO/chebi.obo-9605-synonym: "aclidinium bromide" RELATED INN [KEGG DRUG:]
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emboss-6.6.0+dfsg/emboss/data/OBO/chebi.obo-26163-name: bitolterol mesylate
emboss-6.6.0+dfsg/emboss/data/OBO/chebi.obo:26164:def: "The methanesulfonate salt of bitolterol. A beta2-adrenergic receptor agonist, it is used for relief of bronchospasm in conditions such as asthma, chronic bronchitis and emphysema." []
emboss-6.6.0+dfsg/emboss/data/OBO/chebi.obo-26165-synonym: "4-[2-(tert-butylamino)-1-hydroxyethyl]benzene-1,2-diyl bis(4-methylbenzoate) mesylate" RELATED [ChEBI:]
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emboss-6.6.0+dfsg/emboss/data/OBO/chebi.obo-104666-name: aclidinium
emboss-6.6.0+dfsg/emboss/data/OBO/chebi.obo:104667:def: "A carboxylic ester obtained by formal condensation between the carboxy group of 2-hydroxy(di-2-thienyl)acetic acid and the hydroxy group of N-(3-phenoxypropyl)-3-quinuclidinol. Used as its bromide salt for the long-term maintenance treatment of bronchospasm associated with chronic obstructive pulmonary disease (COPD)." []
emboss-6.6.0+dfsg/emboss/data/OBO/chebi.obo-104668-synonym: "(3R)-3-[2-hydroxy(di-2-thienyl)acetoxy]-1-(3-phenoxypropyl)-1-azoniabicyclo[2.2.2]octane" EXACT IUPAC_NAME [IUPAC:]
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emboss-6.6.0+dfsg/emboss/data/OBO/chebi.obo-131812-alt_id: CHEBI:265774
emboss-6.6.0+dfsg/emboss/data/OBO/chebi.obo:131813:def: "The ester resulting from the formal condensation of 1-cyclohexylcyclohexanecarboxylic acid with 2-(diethylamino)ethanol. An anticholinergic, it is used as the hydrochloride to treat or prevent spasm in the muscles of the gastrointestinal tract, particularly that associated with irritable bowel syndrome." []
emboss-6.6.0+dfsg/emboss/data/OBO/chebi.obo-131814-synonym: "dicicloverina" RELATED INN [ChemIDplus:]
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emboss-6.6.0+dfsg/emboss/data/OBO/chebi.obo-145204-name: bitolterol
emboss-6.6.0+dfsg/emboss/data/OBO/chebi.obo:145205:def: "The di-4-toluate ester of (+-)-N-tert-butylnoradrenaline (colterol). A pro-drug for colterol, a beta2-adrenergic receptor agonist, bitolterol is used as its methanesulfonate salt for relief of bronchospasm in conditions such as asthma, chronic bronchitis and emphysema." []
emboss-6.6.0+dfsg/emboss/data/OBO/chebi.obo-145206-synonym: "4-[2-(tert-butylamino)-1-hydroxyethyl]-o-phenylene di-p-toluate" RELATED [ChEBI:]
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emboss-6.6.0+dfsg/emboss/data/OBO/chebi.obo-612936-alt_id: CHEBI:3722
emboss-6.6.0+dfsg/emboss/data/OBO/chebi.obo:612937:def: "A platinum-containing anticancer drug that interacts with, and forms cross-links between, DNA and proteins. It is used as a neoplasm inhibitor to treat solid tumours, primarily of the testis and ovary." []
emboss-6.6.0+dfsg/emboss/data/OBO/chebi.obo-612938-synonym: "Briplatin" RELATED BRAND_NAME [ChemIDplus:]
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emboss-6.6.0+dfsg/emboss/data/OBO/chebi.obo-633671-name: muscle relaxant
emboss-6.6.0+dfsg/emboss/data/OBO/chebi.obo:633672:def: "A drug used to produce muscle relaxation (excepting neuromuscular blocking agents). Its primary clinical and therapeutic use is the treatment of muscle spasm and immobility associated with strains, sprains, and injuries of the back and, to a lesser degree, injuries to the neck. Also used for the treatment of a variety of clinical conditions that have in common only the presence of skeletal muscle hyperactivity, for example, the muscle spasms that can occur in multiple sclerosis." []
emboss-6.6.0+dfsg/emboss/data/OBO/chebi.obo-633673-synonym: "muscle relaxants" RELATED [ChEBI:]
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emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-1858-name: protein folding pathway
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:1859:def: "Those reactions and molecular interactions underlying the folding of a protein into its functional three-dimensional structure. Folding takes place in the cytoplasm and, in the case of secreted proteins, in the endoplasmic reticulum. Proteins are checked (quality control) for proper folding and misfolded proteins are targeted for degradation." [Gene Ontology:GO\:0006457, MCW e-journals:Current Opinions in Cell Biology]
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-1860-is_a: PW:0000181 ! pathway pertinent to protein folding, sorting, modification, translocation and degradation
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emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-2168-name: nuclear factor of activated T-cells signaling pathway
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:2169:def: "Members of the NFAT family of transcription factors, once de-phosphorylated by calcineurin translocate from the cytoplasm to the nucleus where they induce the transcription of genes involved in the immune response, cell-cell interactions. NFAT signaling is believed to play important roles in the development and function of the cardiovascular system." [Gene Ontology:GO\:0033173, pUBmED:PMID\: 11983154 \,PMID\: 12975316]
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-2170-synonym: "NFAT signaling pathway" RELATED []
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emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4082-def: "Cancer, or malignant neoplasm, represents a category of diseases characterized by uncontrolled cell growth and avoidance of apoptosis, invasion and metastasis. Deregulation of many pathways - signaling, regulatory, metabolic and combination of them, have been implicated in susceptibility to or development of these conditions. Generally, cancer is classified according to the tissue or organ affected." [PubMed:PMID\: 10647931]
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:4083:synonym: "neoplasm pathway" RELATED []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4084-is_a: PW:0000013 ! disease pathway
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emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4097-def: "Ovarian cancer is a leading cause of cancer deaths in women. Several susceptibility genes have been identified and they have a role to play in pathways involved in or regulating proliferation, DNA repair and apoptosis." [PubMed:PMID\:12413930; PMID\:12886939; PMID\:15111296]
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:4098:synonym: "ovarian neoplasm pathway" RELATED []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4099-is_a: PW:0000606 ! urogenital cancer pathway
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emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4104-def: "Cervical cancer affects the cervical area and human papilloma virus (HPV) infection plays a major role in the pathogenesis of the condition. A number of HPV proteins interact with and affect the function of several host proteins that play a role in apoptoptic pathway and/or those involved in cell proliferation." [PubMed:PMID\:10471054; PMID\:11486705]
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:4105:synonym: "cervical neoplasm pathway" RELATED []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4106-is_a: PW:0000606 ! urogenital cancer pathway
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emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4112-synonym: "KEGG:05215" RELATED []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:4113:synonym: "prostate neoplasm pathway" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4114-is_a: PW:0000606 ! urogenital cancer pathway
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4119-def: "Bladder cancer groups several types of malignant tumors of the urinary bladder. It is more prevalent in men than in women and combines both risk factors such as tobacco and exposure to certain carcinogens and genetic factors. Mutations in genes involved in a number of signaling pathways have been implicated in the development of these conditions." [KEGG:map05219, PubMed:PMID\:17158541; PMID\:16474624]
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:4120:synonym: "bladder neoplasm pathway" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4121-synonym: "KEGG:05219" RELATED []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4127-def: "Endometrial cancer affects the lining of the uterus, or endometrium. Hormonal and genetic alterations play a role in the development of this carcinoma type. Mutations in genes acting in several pathways have been associated with the condition and its types." [KEGG:map05213, PubMed:PMID\:12583434; PMID\:15947972; PMID\:16508724]
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:4128:synonym: "endometrial neoplasm pathway" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4129-synonym: "KEGG:05213" RELATED []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4135-def: "Colorectal cancer are malignant tumors of the colon and rectum. Both risk factors usually relating to life style such as physical exercise or use of tobacco and genetics contribute to the development of the condition. Mutations in the components of canonical Wnt and Smad-dependent TGF-beta signaling and of DNA mismatch repair pathways have been associated with the pathogenesis of colorectal cancer pathway." [KEGG:map05210, OneLook:www.onelook.com]
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:4136:synonym: "colorectal neoplasm pathway" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4137-synonym: "KEGG:05210" RELATED []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4231-name: breast cancer pathway
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:4232:def: "Breast cancer or neoplasm is the most common cancer among women and the second worldwide after lung cancer. Deregulated pathways such estrogen or PI3K-Akt signaling have been implicated in breast cancer. In many cases, the disease is estrogen-dependent and it is possible that dysregulation of miRNA may correlate with the expression of estrogen receptor. Mutations in a number of other genes such as Brca1, 2 and 3 or p53 have also been associated with breast cancer." [OMIM:OMIM\:114480, PubMed:PMID\: 17275086\, 20739888]
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4233-synonym: "breast neoplasm" RELATED []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4239-def: "A general term grouping neoplastic pathways of the biliary tract, liver, pancreas and the gastrointestinal system." [MeSH\, OMIM:]
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:4240:synonym: "digestive system neoplasm pathway" RELATED []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:4241:synonym: "gastrointestinal neoplasm pathway" RELATED []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4242-is_a: PW:0000605 ! cancer pathway
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4248-synonym: "KEGG:05212" RELATED []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:4249:synonym: "pancreatic neoplasm pathway" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4250-is_a: PW:0000625 ! digestive system cancer pathway
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4256-def: "A general term grouping neoplastic pathways of the esophagus, gastric or stomach and intestinal system." [OMIM\, MeSH:]
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:4257:synonym: "gastrointestinal neoplasm pathway" RELATED []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4258-is_a: PW:0000625 ! digestive system cancer pathway
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4262-name: intestinal cancer pathway
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:4263:synonym: "intestinal neoplasm pathway" RELATED []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4264-is_a: PW:0000627 ! gastrointestinal cancer pathway
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4269-def: "Gastric cancer is the forth most common form of cancer worldwide and has a high death rate. Deregulated pathways, such as Wnt, PI3K-Akt or RAF/MEK/ERK, have been implicated in the development of gastric cancer." [PubMeD:PMID\: 17203201]
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:4270:synonym: "gastric neoplasm pathway" RELATED []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4271-synonym: "stomach cancer pathway" RELATED []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4279-synonym: "hepatic cancer pathway" RELATED []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:4280:synonym: "hepatic neoplasm pathway" RELATED []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:4281:synonym: "liver neoplasm pathway" RELATED []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4282-is_a: PW:0000625 ! digestive system cancer pathway
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4287-def: "A general term grouping neoplastic pathways of the upper aerodigestive system. Deregulated pathways, such as TGF-B, PI3K-Akt or epidermal growth factor (EGF) signaling, have been implicated in the of head and neck cancer." [OMIM\, MeSH\, PUbMed:PMID\: 18662538]
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:4288:synonym: "head and neck neoplasm pathway" RELATED []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4289-is_a: PW:0000605 ! cancer pathway
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4293-name: bone cancer pathway
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:4294:synonym: "bone neoplasm pathway" RELATED []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4295-is_a: PW:0000605 ! cancer pathway
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4300-synonym: "<new synonym>" RELATED []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:4301:synonym: "skin neoplasm pathway" RELATED []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4302-is_a: PW:0000605 ! cancer pathway
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4764-synonym: "KEGG:05216" RELATED []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:4765:synonym: "thyroid neoplasm pathway" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4766-is_a: PW:0000631 ! head and neck cancer pathway
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4782-synonym: "<new synonym>" RELATED []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:4783:synonym: "endocrine gland neoplasm pathway" RELATED []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4784-is_a: PW:0000605 ! cancer pathway
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4790-name: thoracic cancer pathway
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:4791:synonym: "thoracic neoplasm pathway" RELATED []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4792-is_a: PW:0000605 ! cancer pathway
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4798-name: respiratory tract cancer pathway
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:4799:synonym: "respiratory tract neoplasm pathway" RELATED []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4800-is_a: PW:0000701 ! thoracic cancer pathway
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4807-def: "Lung cancer is one of the most common cause of cancer-related death in men but also very common in women. The main types are represented by small cell and non-small cell lung carcinomas. The former tends to respond better to chemotherapy; the latter is at times treated surgically." [OneLook:www.onelook.com]
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:4808:synonym: "lung neoplasm pathway" RELATED []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4809-is_a: PW:0000702 ! respiratory tract cancer pathway
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4818-synonym: "SCLC pathway" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:4819:synonym: "small cell lung neoplasm pathway" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4820-is_a: PW:0000703 ! lung cancer pathway
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4828-synonym: "KEGG:05223" RELATED []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:4829:synonym: "non-small cell lung neoplasm pathway" EXACT []
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-4830-synonym: "NSCLC pathway" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-8769-name: RNA transport pathway
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo:8770:def: "The pathway thereby various RNA molecules synthesized in the nucleus are exported to the cytoplasm to be further processed such as the protein-coding mRNA or to fulfill particular functions." [PubMed:PMID\: 21776079\, 15519698]
emboss-6.6.0+dfsg/emboss/data/OBO/pathway.obo-8771-synonym: "KEGG:03013" RELATED []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/so.obo-118-name: scRNA_primary_transcript
emboss-6.6.0+dfsg/emboss/data/OBO/so.obo:119:def: "The primary transcript of any one of several small cytoplasmic RNA molecules present in the cytoplasm and sometimes nucleus of a eukaryote." [http://www.ebi.ac.uk/embl/WebFeat/align/scRNA_s.html]
emboss-6.6.0+dfsg/emboss/data/OBO/so.obo-120-synonym: "scRNA primary transcript" EXACT []
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/Makefile.in-78- esac
emboss-6.6.0+dfsg/emboss/data/OBO/Makefile.in:79:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/emboss/data/OBO/Makefile.in-80-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/emboss/data/OBO/Makefile.in:81: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/emboss/data/OBO/Makefile.in-82- *) f=$$p;; \
emboss-6.6.0+dfsg/emboss/data/OBO/Makefile.in-83- esac;
emboss-6.6.0+dfsg/emboss/data/OBO/Makefile.in:84:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/emboss/data/OBO/Makefile.in-85-am__install_max = 40
emboss-6.6.0+dfsg/emboss/data/OBO/Makefile.in-86-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/emboss/data/OBO/Makefile.in:87: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/emboss/data/OBO/Makefile.in-88-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/Makefile.in-338- @list='$(dist_obo_DATA)'; test -n "$(obodir)" || list=; \
emboss-6.6.0+dfsg/emboss/data/OBO/Makefile.in:339: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/emboss/data/OBO/Makefile.in-340- dir='$(DESTDIR)$(obodir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/Makefile.in-350-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/emboss/data/OBO/Makefile.in:351: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/OBO/Makefile.in:352: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/OBO/Makefile.in-353- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/emboss/data/OBO/Makefile.in-364- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/emboss/data/OBO/Makefile.in:365: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/emboss/data/OBO/Makefile.in-366- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/emboss/data/REBASE/Makefile.in-78- esac
emboss-6.6.0+dfsg/emboss/data/REBASE/Makefile.in:79:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/emboss/data/REBASE/Makefile.in-80-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/emboss/data/REBASE/Makefile.in:81: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/emboss/data/REBASE/Makefile.in-82- *) f=$$p;; \
emboss-6.6.0+dfsg/emboss/data/REBASE/Makefile.in-83- esac;
emboss-6.6.0+dfsg/emboss/data/REBASE/Makefile.in:84:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/emboss/data/REBASE/Makefile.in-85-am__install_max = 40
emboss-6.6.0+dfsg/emboss/data/REBASE/Makefile.in-86-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/emboss/data/REBASE/Makefile.in:87: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/emboss/data/REBASE/Makefile.in-88-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/emboss/data/REBASE/Makefile.in-330- @list='$(dist_rebase_DATA)'; test -n "$(rebasedir)" || list=; \
emboss-6.6.0+dfsg/emboss/data/REBASE/Makefile.in:331: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/emboss/data/REBASE/Makefile.in-332- dir='$(DESTDIR)$(rebasedir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/emboss/data/REBASE/Makefile.in-342-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/emboss/data/REBASE/Makefile.in:343: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/REBASE/Makefile.in:344: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/REBASE/Makefile.in-345- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/emboss/data/REBASE/Makefile.in-356- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/emboss/data/REBASE/Makefile.in:357: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/emboss/data/REBASE/Makefile.in-358- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/emboss/data/Efeatures.gff3-829-# Any one of several small cytoplasmic RNA moleculespresent in the
emboss-6.6.0+dfsg/emboss/data/Efeatures.gff3:830:# cytoplasm and sometimes nucleus of a eukaryote.
emboss-6.6.0+dfsg/emboss/data/Efeatures.gff3-831-
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HLH/Makefile.in-78- esac
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HLH/Makefile.in:79:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HLH/Makefile.in-80-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HLH/Makefile.in:81: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HLH/Makefile.in-82- *) f=$$p;; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HLH/Makefile.in-83- esac;
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HLH/Makefile.in:84:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HLH/Makefile.in-85-am__install_max = 40
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HLH/Makefile.in-86-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HLH/Makefile.in:87: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HLH/Makefile.in-88-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HLH/Makefile.in-330- @list='$(dist_jasparpbmhlh_DATA)'; test -n "$(jasparpbmhlhdir)" || list=; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HLH/Makefile.in:331: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HLH/Makefile.in-332- dir='$(DESTDIR)$(jasparpbmhlhdir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HLH/Makefile.in-342-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HLH/Makefile.in:343: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HLH/Makefile.in:344: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HLH/Makefile.in-345- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HLH/Makefile.in-356- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HLH/Makefile.in:357: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HLH/Makefile.in-358- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_PHYLOFACTS/Makefile.in-78- esac
emboss-6.6.0+dfsg/emboss/data/JASPAR_PHYLOFACTS/Makefile.in:79:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/emboss/data/JASPAR_PHYLOFACTS/Makefile.in-80-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PHYLOFACTS/Makefile.in:81: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PHYLOFACTS/Makefile.in-82- *) f=$$p;; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PHYLOFACTS/Makefile.in-83- esac;
emboss-6.6.0+dfsg/emboss/data/JASPAR_PHYLOFACTS/Makefile.in:84:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/emboss/data/JASPAR_PHYLOFACTS/Makefile.in-85-am__install_max = 40
emboss-6.6.0+dfsg/emboss/data/JASPAR_PHYLOFACTS/Makefile.in-86-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PHYLOFACTS/Makefile.in:87: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/emboss/data/JASPAR_PHYLOFACTS/Makefile.in-88-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_PHYLOFACTS/Makefile.in-330- @list='$(dist_jasparphylofacts_DATA)'; test -n "$(jasparphylofactsdir)" || list=; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PHYLOFACTS/Makefile.in:331: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PHYLOFACTS/Makefile.in-332- dir='$(DESTDIR)$(jasparphylofactsdir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_PHYLOFACTS/Makefile.in-342-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/emboss/data/JASPAR_PHYLOFACTS/Makefile.in:343: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PHYLOFACTS/Makefile.in:344: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PHYLOFACTS/Makefile.in-345- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_PHYLOFACTS/Makefile.in-356- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PHYLOFACTS/Makefile.in:357: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PHYLOFACTS/Makefile.in-358- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/emboss/data/DRCAT.dat-3281-ID GRIN
emboss-6.6.0+dfsg/emboss/data/DRCAT.dat:3282:Name Germplasm Resources Information Network (GRIN)
emboss-6.6.0+dfsg/emboss/data/DRCAT.dat:3283:Desc GRIN taxonomic data provide the structure and nomenclature for accessions of the National Plant Germplasm System (NPGS). All families and genera of vascular plants and species from throughout the world are represented, especially economic plants and their relatives. Information on scientific and common names, classification, distribution, references, and economic impacts are provided.
emboss-6.6.0+dfsg/emboss/data/DRCAT.dat-3284-URL http://www.ars-grin.gov/cgi-bin/npgs/html/index.pl
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_CORE/Makefile.in-78- esac
emboss-6.6.0+dfsg/emboss/data/JASPAR_CORE/Makefile.in:79:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/emboss/data/JASPAR_CORE/Makefile.in-80-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/emboss/data/JASPAR_CORE/Makefile.in:81: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_CORE/Makefile.in-82- *) f=$$p;; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_CORE/Makefile.in-83- esac;
emboss-6.6.0+dfsg/emboss/data/JASPAR_CORE/Makefile.in:84:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/emboss/data/JASPAR_CORE/Makefile.in-85-am__install_max = 40
emboss-6.6.0+dfsg/emboss/data/JASPAR_CORE/Makefile.in-86-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/emboss/data/JASPAR_CORE/Makefile.in:87: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/emboss/data/JASPAR_CORE/Makefile.in-88-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_CORE/Makefile.in-330- @list='$(dist_jasparcore_DATA)'; test -n "$(jasparcoredir)" || list=; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_CORE/Makefile.in:331: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_CORE/Makefile.in-332- dir='$(DESTDIR)$(jasparcoredir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_CORE/Makefile.in-342-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/emboss/data/JASPAR_CORE/Makefile.in:343: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_CORE/Makefile.in:344: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_CORE/Makefile.in-345- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_CORE/Makefile.in-356- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/emboss/data/JASPAR_CORE/Makefile.in:357: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_CORE/Makefile.in-358- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/emboss/data/CODONS/Makefile.in-78- esac
emboss-6.6.0+dfsg/emboss/data/CODONS/Makefile.in:79:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/emboss/data/CODONS/Makefile.in-80-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/emboss/data/CODONS/Makefile.in:81: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/emboss/data/CODONS/Makefile.in-82- *) f=$$p;; \
emboss-6.6.0+dfsg/emboss/data/CODONS/Makefile.in-83- esac;
emboss-6.6.0+dfsg/emboss/data/CODONS/Makefile.in:84:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/emboss/data/CODONS/Makefile.in-85-am__install_max = 40
emboss-6.6.0+dfsg/emboss/data/CODONS/Makefile.in-86-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/emboss/data/CODONS/Makefile.in:87: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/emboss/data/CODONS/Makefile.in-88-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/emboss/data/CODONS/Makefile.in-584- @list='$(dist_codons_DATA)'; test -n "$(codonsdir)" || list=; \
emboss-6.6.0+dfsg/emboss/data/CODONS/Makefile.in:585: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/emboss/data/CODONS/Makefile.in-586- dir='$(DESTDIR)$(codonsdir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/emboss/data/CODONS/Makefile.in-596-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/emboss/data/CODONS/Makefile.in:597: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/CODONS/Makefile.in:598: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/CODONS/Makefile.in-599- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/emboss/data/CODONS/Makefile.in-610- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/emboss/data/CODONS/Makefile.in:611: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/emboss/data/CODONS/Makefile.in-612- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/names.dmp-299-69 | Lysobacter enzymogenes Christensen and Cook 1978 | | authority |
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/names.dmp:300:69 | UASM 495 | | type material |
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/names.dmp-301-71 | Simonsiella | | scientific name |
##############################################
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/names.dmp-6852-995 | Solitalea canadensis (Christensen 1980) Weon et al. 2009 | | authority |
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/names.dmp:6853:995 | UASM 9D | | type material |
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/names.dmp-6854-995 | [Flexibacter] canadensis | | synonym |
##############################################
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/names.dmp-148206-84531 | Lysobacter sp. DWu175 | | includes |
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/names.dmp:148207:84531 | UASM 3C | | type material |
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/names.dmp-148208-84532 | Oscillatoria sp. NKBG091600 | | scientific name |
##############################################
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/names.dmp-402816-262323 | Lysobacter brunescens Christensen and Cook 1978 | | synonym |
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/names.dmp:402817:262323 | UASM D | | type material |
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/names.dmp-402818-262324 | ATCC 29489 | | type material |
##############################################
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/names.dmp-402823-262324 | Lysobacter sp. OeWu101 | | includes |
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/names.dmp:402824:262324 | UASM 402 | | type material |
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/names.dmp-402825-262325 | DSM 16239 | | type material |
##############################################
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/names.dmp-430617-284984 | Stichococcus sp. MBIC10465 | | scientific name |
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/names.dmp:430618:284986 | Macrosoma sp. UASM #FSb983 | | scientific name |
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/names.dmp-430619-284987 | Papilio erithonioides | | scientific name |
##############################################
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/names.dmp-1393205-1195238 | Cloning vector GST-SBP | | scientific name |
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/names.dmp:1393206:1195239 | Cloning vector ASM | | scientific name |
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/names.dmp-1393207-1195240 | Cloning vector AN | | scientific name |
##############################################
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/Makefile.in-78- esac
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/Makefile.in:79:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/Makefile.in-80-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/Makefile.in:81: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/Makefile.in-82- *) f=$$p;; \
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/Makefile.in-83- esac;
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/Makefile.in:84:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/Makefile.in-85-am__install_max = 40
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/Makefile.in-86-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/Makefile.in:87: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/Makefile.in-88-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/Makefile.in-330- @list='$(dist_taxonomy_DATA)'; test -n "$(taxonomydir)" || list=; \
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/Makefile.in:331: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/Makefile.in-332- dir='$(DESTDIR)$(taxonomydir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/Makefile.in-342-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/Makefile.in:343: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/Makefile.in:344: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/Makefile.in-345- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/Makefile.in-356- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/Makefile.in:357: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/emboss/data/TAXONOMY/Makefile.in-358- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/emboss/data/PROSITE/Makefile.in-78- esac
emboss-6.6.0+dfsg/emboss/data/PROSITE/Makefile.in:79:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/emboss/data/PROSITE/Makefile.in-80-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/emboss/data/PROSITE/Makefile.in:81: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/emboss/data/PROSITE/Makefile.in-82- *) f=$$p;; \
emboss-6.6.0+dfsg/emboss/data/PROSITE/Makefile.in-83- esac;
emboss-6.6.0+dfsg/emboss/data/PROSITE/Makefile.in:84:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/emboss/data/PROSITE/Makefile.in-85-am__install_max = 40
emboss-6.6.0+dfsg/emboss/data/PROSITE/Makefile.in-86-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/emboss/data/PROSITE/Makefile.in:87: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/emboss/data/PROSITE/Makefile.in-88-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/emboss/data/PROSITE/Makefile.in-330- @list='$(dist_prosite_DATA)'; test -n "$(prositedir)" || list=; \
emboss-6.6.0+dfsg/emboss/data/PROSITE/Makefile.in:331: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/emboss/data/PROSITE/Makefile.in-332- dir='$(DESTDIR)$(prositedir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/emboss/data/PROSITE/Makefile.in-342-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/emboss/data/PROSITE/Makefile.in:343: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/PROSITE/Makefile.in:344: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/PROSITE/Makefile.in-345- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/emboss/data/PROSITE/Makefile.in-356- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/emboss/data/PROSITE/Makefile.in:357: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/emboss/data/PROSITE/Makefile.in-358- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/emboss/data/Efeatures.embl-1157-# small cytoplasmic RNA; any one of several small cytoplasmic RNA
emboss-6.6.0+dfsg/emboss/data/Efeatures.embl:1158:# molecules present in the cytoplasm and (sometimes) nucleus of a
emboss-6.6.0+dfsg/emboss/data/Efeatures.embl-1159-# eukaryote;
##############################################
emboss-6.6.0+dfsg/emboss/data/Efeatures.embl-1161-# SO: Any one of several small cytoplasmic RNA moleculespresent in the
emboss-6.6.0+dfsg/emboss/data/Efeatures.embl:1162:# cytoplasm and sometimes nucleus of a eukaryote.
emboss-6.6.0+dfsg/emboss/data/Efeatures.embl-1163-
##############################################
emboss-6.6.0+dfsg/emboss/data/PRINTS/Makefile.in-78- esac
emboss-6.6.0+dfsg/emboss/data/PRINTS/Makefile.in:79:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/emboss/data/PRINTS/Makefile.in-80-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/emboss/data/PRINTS/Makefile.in:81: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/emboss/data/PRINTS/Makefile.in-82- *) f=$$p;; \
emboss-6.6.0+dfsg/emboss/data/PRINTS/Makefile.in-83- esac;
emboss-6.6.0+dfsg/emboss/data/PRINTS/Makefile.in:84:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/emboss/data/PRINTS/Makefile.in-85-am__install_max = 40
emboss-6.6.0+dfsg/emboss/data/PRINTS/Makefile.in-86-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/emboss/data/PRINTS/Makefile.in:87: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/emboss/data/PRINTS/Makefile.in-88-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/emboss/data/PRINTS/Makefile.in-330- @list='$(dist_prints_DATA)'; test -n "$(printsdir)" || list=; \
emboss-6.6.0+dfsg/emboss/data/PRINTS/Makefile.in:331: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/emboss/data/PRINTS/Makefile.in-332- dir='$(DESTDIR)$(printsdir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/emboss/data/PRINTS/Makefile.in-342-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/emboss/data/PRINTS/Makefile.in:343: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/PRINTS/Makefile.in:344: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/PRINTS/Makefile.in-345- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/emboss/data/PRINTS/Makefile.in-356- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/emboss/data/PRINTS/Makefile.in:357: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/emboss/data/PRINTS/Makefile.in-358- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM/Makefile.in-78- esac
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM/Makefile.in:79:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM/Makefile.in-80-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM/Makefile.in:81: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM/Makefile.in-82- *) f=$$p;; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM/Makefile.in-83- esac;
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM/Makefile.in:84:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM/Makefile.in-85-am__install_max = 40
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM/Makefile.in-86-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM/Makefile.in:87: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM/Makefile.in-88-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM/Makefile.in-330- @list='$(dist_jasparpbm_DATA)'; test -n "$(jasparpbmdir)" || list=; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM/Makefile.in:331: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM/Makefile.in-332- dir='$(DESTDIR)$(jasparpbmdir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM/Makefile.in-342-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM/Makefile.in:343: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM/Makefile.in:344: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM/Makefile.in-345- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM/Makefile.in-356- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM/Makefile.in:357: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM/Makefile.in-358- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/emboss/data/Ehet.dat-15509-//
emboss-6.6.0+dfsg/emboss/data/Ehet.dat:15510:ID ASM
emboss-6.6.0+dfsg/emboss/data/Ehet.dat-15511-DE 2-AMINO-4-OXO-4(1H-PYRROL-1-YL)BUTANOIC ACID
##############################################
emboss-6.6.0+dfsg/emboss/data/AAINDEX/Makefile.in-78- esac
emboss-6.6.0+dfsg/emboss/data/AAINDEX/Makefile.in:79:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/emboss/data/AAINDEX/Makefile.in-80-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/emboss/data/AAINDEX/Makefile.in:81: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/emboss/data/AAINDEX/Makefile.in-82- *) f=$$p;; \
emboss-6.6.0+dfsg/emboss/data/AAINDEX/Makefile.in-83- esac;
emboss-6.6.0+dfsg/emboss/data/AAINDEX/Makefile.in:84:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/emboss/data/AAINDEX/Makefile.in-85-am__install_max = 40
emboss-6.6.0+dfsg/emboss/data/AAINDEX/Makefile.in-86-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/emboss/data/AAINDEX/Makefile.in:87: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/emboss/data/AAINDEX/Makefile.in-88-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/emboss/data/AAINDEX/Makefile.in-330- @list='$(dist_aaindex_DATA)'; test -n "$(aaindexdir)" || list=; \
emboss-6.6.0+dfsg/emboss/data/AAINDEX/Makefile.in:331: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/emboss/data/AAINDEX/Makefile.in-332- dir='$(DESTDIR)$(aaindexdir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/emboss/data/AAINDEX/Makefile.in-342-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/emboss/data/AAINDEX/Makefile.in:343: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/AAINDEX/Makefile.in:344: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/AAINDEX/Makefile.in-345- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/emboss/data/AAINDEX/Makefile.in-356- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/emboss/data/AAINDEX/Makefile.in:357: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/emboss/data/AAINDEX/Makefile.in-358- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_POLII/Makefile.in-78- esac
emboss-6.6.0+dfsg/emboss/data/JASPAR_POLII/Makefile.in:79:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/emboss/data/JASPAR_POLII/Makefile.in-80-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/emboss/data/JASPAR_POLII/Makefile.in:81: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_POLII/Makefile.in-82- *) f=$$p;; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_POLII/Makefile.in-83- esac;
emboss-6.6.0+dfsg/emboss/data/JASPAR_POLII/Makefile.in:84:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/emboss/data/JASPAR_POLII/Makefile.in-85-am__install_max = 40
emboss-6.6.0+dfsg/emboss/data/JASPAR_POLII/Makefile.in-86-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/emboss/data/JASPAR_POLII/Makefile.in:87: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/emboss/data/JASPAR_POLII/Makefile.in-88-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_POLII/Makefile.in-330- @list='$(dist_jasparpolii_DATA)'; test -n "$(jasparpoliidir)" || list=; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_POLII/Makefile.in:331: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_POLII/Makefile.in-332- dir='$(DESTDIR)$(jasparpoliidir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_POLII/Makefile.in-342-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/emboss/data/JASPAR_POLII/Makefile.in:343: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_POLII/Makefile.in:344: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_POLII/Makefile.in-345- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_POLII/Makefile.in-356- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/emboss/data/JASPAR_POLII/Makefile.in:357: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_POLII/Makefile.in-358- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HOMEO/Makefile.in-78- esac
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HOMEO/Makefile.in:79:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HOMEO/Makefile.in-80-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HOMEO/Makefile.in:81: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HOMEO/Makefile.in-82- *) f=$$p;; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HOMEO/Makefile.in-83- esac;
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HOMEO/Makefile.in:84:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HOMEO/Makefile.in-85-am__install_max = 40
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HOMEO/Makefile.in-86-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HOMEO/Makefile.in:87: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HOMEO/Makefile.in-88-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HOMEO/Makefile.in-330- @list='$(dist_jasparpbmhomeo_DATA)'; test -n "$(jasparpbmhomeodir)" || list=; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HOMEO/Makefile.in:331: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HOMEO/Makefile.in-332- dir='$(DESTDIR)$(jasparpbmhomeodir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HOMEO/Makefile.in-342-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HOMEO/Makefile.in:343: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HOMEO/Makefile.in:344: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HOMEO/Makefile.in-345- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HOMEO/Makefile.in-356- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HOMEO/Makefile.in:357: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_PBM_HOMEO/Makefile.in-358- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_CNE/Makefile.in-78- esac
emboss-6.6.0+dfsg/emboss/data/JASPAR_CNE/Makefile.in:79:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/emboss/data/JASPAR_CNE/Makefile.in-80-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/emboss/data/JASPAR_CNE/Makefile.in:81: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_CNE/Makefile.in-82- *) f=$$p;; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_CNE/Makefile.in-83- esac;
emboss-6.6.0+dfsg/emboss/data/JASPAR_CNE/Makefile.in:84:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/emboss/data/JASPAR_CNE/Makefile.in-85-am__install_max = 40
emboss-6.6.0+dfsg/emboss/data/JASPAR_CNE/Makefile.in-86-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/emboss/data/JASPAR_CNE/Makefile.in:87: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/emboss/data/JASPAR_CNE/Makefile.in-88-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_CNE/Makefile.in-330- @list='$(dist_jasparcne_DATA)'; test -n "$(jasparcnedir)" || list=; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_CNE/Makefile.in:331: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_CNE/Makefile.in-332- dir='$(DESTDIR)$(jasparcnedir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_CNE/Makefile.in-342-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/emboss/data/JASPAR_CNE/Makefile.in:343: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_CNE/Makefile.in:344: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_CNE/Makefile.in-345- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/emboss/data/JASPAR_CNE/Makefile.in-356- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/emboss/data/JASPAR_CNE/Makefile.in:357: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/emboss/data/JASPAR_CNE/Makefile.in-358- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/emboss/data/sofa.obo-69-name: scRNA
emboss-6.6.0+dfsg/emboss/data/sofa.obo:70:def: "Any one of several small cytoplasmic RNA molecules present in the cytoplasm and sometimes nucleus of a Eukaryote." [http://www.ebi.ac.uk/embl/WebFeat/align/scRNA_s.html]
emboss-6.6.0+dfsg/emboss/data/sofa.obo-71-subset: SOFA
##############################################
emboss-6.6.0+dfsg/emboss/data/Makefile.in-85- esac
emboss-6.6.0+dfsg/emboss/data/Makefile.in:86:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/emboss/data/Makefile.in-87-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/emboss/data/Makefile.in:88: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/emboss/data/Makefile.in-89- *) f=$$p;; \
emboss-6.6.0+dfsg/emboss/data/Makefile.in-90- esac;
emboss-6.6.0+dfsg/emboss/data/Makefile.in:91:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/emboss/data/Makefile.in-92-am__install_max = 40
emboss-6.6.0+dfsg/emboss/data/Makefile.in-93-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/emboss/data/Makefile.in:94: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/emboss/data/Makefile.in-95-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/emboss/data/Makefile.in-130- while test -n "$$dir1"; do \
emboss-6.6.0+dfsg/emboss/data/Makefile.in:131: first=`echo "$$dir1" | sed -e "$$sed_first"`; \
emboss-6.6.0+dfsg/emboss/data/Makefile.in-132- if test "$$first" != "."; then \
emboss-6.6.0+dfsg/emboss/data/Makefile.in-133- if test "$$first" = ".."; then \
emboss-6.6.0+dfsg/emboss/data/Makefile.in:134: dir2=`echo "$$dir0" | sed -e "$$sed_last"`/"$$dir2"; \
emboss-6.6.0+dfsg/emboss/data/Makefile.in:135: dir0=`echo "$$dir0" | sed -e "$$sed_butlast"`; \
emboss-6.6.0+dfsg/emboss/data/Makefile.in-136- else \
emboss-6.6.0+dfsg/emboss/data/Makefile.in:137: first2=`echo "$$dir2" | sed -e "$$sed_first"`; \
emboss-6.6.0+dfsg/emboss/data/Makefile.in-138- if test "$$first2" = "$$first"; then \
emboss-6.6.0+dfsg/emboss/data/Makefile.in:139: dir2=`echo "$$dir2" | sed -e "$$sed_rest"`; \
emboss-6.6.0+dfsg/emboss/data/Makefile.in-140- else \
##############################################
emboss-6.6.0+dfsg/emboss/data/Makefile.in-145- fi; \
emboss-6.6.0+dfsg/emboss/data/Makefile.in:146: dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \
emboss-6.6.0+dfsg/emboss/data/Makefile.in-147- done; \
##############################################
emboss-6.6.0+dfsg/emboss/data/Makefile.in-565- @list='$(dist_embossdata_DATA)'; test -n "$(embossdatadir)" || list=; \
emboss-6.6.0+dfsg/emboss/data/Makefile.in:566: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/emboss/data/Makefile.in-567- dir='$(DESTDIR)$(embossdatadir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/emboss/data/Makefile.in-583- dot_seen=no; \
emboss-6.6.0+dfsg/emboss/data/Makefile.in:584: target=`echo $@ | sed s/-recursive//`; \
emboss-6.6.0+dfsg/emboss/data/Makefile.in-585- case "$@" in \
##############################################
emboss-6.6.0+dfsg/emboss/data/Makefile.in-673-GTAGS:
emboss-6.6.0+dfsg/emboss/data/Makefile.in:674: here=`$(am__cd) $(top_builddir) && pwd` \
emboss-6.6.0+dfsg/emboss/data/Makefile.in-675- && $(am__cd) $(top_srcdir) \
##############################################
emboss-6.6.0+dfsg/emboss/data/Makefile.in-695-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/emboss/data/Makefile.in:696: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/Makefile.in:697: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/data/Makefile.in-698- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/emboss/data/Makefile.in-709- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/emboss/data/Makefile.in:710: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/emboss/data/Makefile.in-711- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/emboss/Makefile.in-2981- esac
emboss-6.6.0+dfsg/emboss/Makefile.in:2982:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/emboss/Makefile.in-2983-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/emboss/Makefile.in:2984: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/emboss/Makefile.in-2985- *) f=$$p;; \
emboss-6.6.0+dfsg/emboss/Makefile.in-2986- esac;
emboss-6.6.0+dfsg/emboss/Makefile.in:2987:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/emboss/Makefile.in-2988-am__install_max = 40
emboss-6.6.0+dfsg/emboss/Makefile.in-2989-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/emboss/Makefile.in:2990: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/emboss/Makefile.in-2991-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/emboss/Makefile.in-3025- while test -n "$$dir1"; do \
emboss-6.6.0+dfsg/emboss/Makefile.in:3026: first=`echo "$$dir1" | sed -e "$$sed_first"`; \
emboss-6.6.0+dfsg/emboss/Makefile.in-3027- if test "$$first" != "."; then \
emboss-6.6.0+dfsg/emboss/Makefile.in-3028- if test "$$first" = ".."; then \
emboss-6.6.0+dfsg/emboss/Makefile.in:3029: dir2=`echo "$$dir0" | sed -e "$$sed_last"`/"$$dir2"; \
emboss-6.6.0+dfsg/emboss/Makefile.in:3030: dir0=`echo "$$dir0" | sed -e "$$sed_butlast"`; \
emboss-6.6.0+dfsg/emboss/Makefile.in-3031- else \
emboss-6.6.0+dfsg/emboss/Makefile.in:3032: first2=`echo "$$dir2" | sed -e "$$sed_first"`; \
emboss-6.6.0+dfsg/emboss/Makefile.in-3033- if test "$$first2" = "$$first"; then \
emboss-6.6.0+dfsg/emboss/Makefile.in:3034: dir2=`echo "$$dir2" | sed -e "$$sed_rest"`; \
emboss-6.6.0+dfsg/emboss/Makefile.in-3035- else \
##############################################
emboss-6.6.0+dfsg/emboss/Makefile.in-3040- fi; \
emboss-6.6.0+dfsg/emboss/Makefile.in:3041: dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \
emboss-6.6.0+dfsg/emboss/Makefile.in-3042- done; \
##############################################
emboss-6.6.0+dfsg/emboss/Makefile.in-3614- test -n "$(EXEEXT)" || exit 0; \
emboss-6.6.0+dfsg/emboss/Makefile.in:3615: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \
emboss-6.6.0+dfsg/emboss/Makefile.in-3616- echo " rm -f" $$list; \
##############################################
emboss-6.6.0+dfsg/emboss/Makefile.in-3623- test -n "$(EXEEXT)" || exit 0; \
emboss-6.6.0+dfsg/emboss/Makefile.in:3624: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \
emboss-6.6.0+dfsg/emboss/Makefile.in-3625- echo " rm -f" $$list; \
##############################################
emboss-6.6.0+dfsg/emboss/Makefile.in-4846-.c.obj:
emboss-6.6.0+dfsg/emboss/Makefile.in:4847:@am__fastdepCC_TRUE@ $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
emboss-6.6.0+dfsg/emboss/Makefile.in-4848-@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
##############################################
emboss-6.6.0+dfsg/emboss/Makefile.in-4850-@AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
emboss-6.6.0+dfsg/emboss/Makefile.in:4851:@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'`
emboss-6.6.0+dfsg/emboss/Makefile.in-4852-
##############################################
emboss-6.6.0+dfsg/emboss/Makefile.in-4883- @list='$(dist_pkgdata_DATA)'; test -n "$(pkgdatadir)" || list=; \
emboss-6.6.0+dfsg/emboss/Makefile.in:4884: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/emboss/Makefile.in-4885- dir='$(DESTDIR)$(pkgdatadir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/emboss/Makefile.in-4901- dot_seen=no; \
emboss-6.6.0+dfsg/emboss/Makefile.in:4902: target=`echo $@ | sed s/-recursive//`; \
emboss-6.6.0+dfsg/emboss/Makefile.in-4903- case "$@" in \
##############################################
emboss-6.6.0+dfsg/emboss/Makefile.in-4991-GTAGS:
emboss-6.6.0+dfsg/emboss/Makefile.in:4992: here=`$(am__cd) $(top_builddir) && pwd` \
emboss-6.6.0+dfsg/emboss/Makefile.in-4993- && $(am__cd) $(top_srcdir) \
##############################################
emboss-6.6.0+dfsg/emboss/Makefile.in-5013-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/emboss/Makefile.in:5014: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/Makefile.in:5015: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/emboss/Makefile.in-5016- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/emboss/Makefile.in-5027- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/emboss/Makefile.in:5028: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/emboss/Makefile.in-5029- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/doc/manuals/Makefile-77- esac
emboss-6.6.0+dfsg/doc/manuals/Makefile:78:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/doc/manuals/Makefile-79-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/doc/manuals/Makefile:80: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/doc/manuals/Makefile-81- *) f=$$p;; \
emboss-6.6.0+dfsg/doc/manuals/Makefile-82- esac;
emboss-6.6.0+dfsg/doc/manuals/Makefile:83:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/doc/manuals/Makefile-84-am__install_max = 40
emboss-6.6.0+dfsg/doc/manuals/Makefile-85-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/doc/manuals/Makefile:86: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/doc/manuals/Makefile-87-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/doc/manuals/Makefile-345- @list='$(manuals_DATA)'; test -n "$(manualsdir)" || list=; \
emboss-6.6.0+dfsg/doc/manuals/Makefile:346: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/doc/manuals/Makefile-347- dir='$(DESTDIR)$(manualsdir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/doc/manuals/Makefile-357-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/doc/manuals/Makefile:358: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/doc/manuals/Makefile:359: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/doc/manuals/Makefile-360- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/doc/manuals/Makefile-371- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/doc/manuals/Makefile:372: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/doc/manuals/Makefile-373- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/doc/manuals/Makefile.in-77- esac
emboss-6.6.0+dfsg/doc/manuals/Makefile.in:78:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/doc/manuals/Makefile.in-79-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/doc/manuals/Makefile.in:80: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/doc/manuals/Makefile.in-81- *) f=$$p;; \
emboss-6.6.0+dfsg/doc/manuals/Makefile.in-82- esac;
emboss-6.6.0+dfsg/doc/manuals/Makefile.in:83:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/doc/manuals/Makefile.in-84-am__install_max = 40
emboss-6.6.0+dfsg/doc/manuals/Makefile.in-85-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/doc/manuals/Makefile.in:86: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/doc/manuals/Makefile.in-87-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/doc/manuals/Makefile.in-345- @list='$(manuals_DATA)'; test -n "$(manualsdir)" || list=; \
emboss-6.6.0+dfsg/doc/manuals/Makefile.in:346: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/doc/manuals/Makefile.in-347- dir='$(DESTDIR)$(manualsdir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/doc/manuals/Makefile.in-357-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/doc/manuals/Makefile.in:358: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/doc/manuals/Makefile.in:359: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/doc/manuals/Makefile.in-360- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/doc/manuals/Makefile.in-371- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/doc/manuals/Makefile.in:372: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/doc/manuals/Makefile.in-373- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/doc/programs/master/emboss/apps/nthseq.html-108-$count=1;
emboss-6.6.0+dfsg/doc/programs/master/emboss/apps/nthseq.html:109:@list = `infoseq $ARGV[0] -auto -only -name`;
emboss-6.6.0+dfsg/doc/programs/master/emboss/apps/nthseq.html-110-while ($count <= $#list+1) {
emboss-6.6.0+dfsg/doc/programs/master/emboss/apps/nthseq.html:111: system("nthseq -auto $ARGV[0] -n $count $ARGV[1]-$count.seq");
emboss-6.6.0+dfsg/doc/programs/master/emboss/apps/nthseq.html-112- $count++;
##############################################
emboss-6.6.0+dfsg/doc/programs/text/Makefile-77- esac
emboss-6.6.0+dfsg/doc/programs/text/Makefile:78:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/doc/programs/text/Makefile-79-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/doc/programs/text/Makefile:80: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/doc/programs/text/Makefile-81- *) f=$$p;; \
emboss-6.6.0+dfsg/doc/programs/text/Makefile-82- esac;
emboss-6.6.0+dfsg/doc/programs/text/Makefile:83:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/doc/programs/text/Makefile-84-am__install_max = 40
emboss-6.6.0+dfsg/doc/programs/text/Makefile-85-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/doc/programs/text/Makefile:86: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/doc/programs/text/Makefile-87-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/doc/programs/text/Makefile-595- @list='$(eprograms1_DATA)'; test -n "$(eprograms1dir)" || list=; \
emboss-6.6.0+dfsg/doc/programs/text/Makefile:596: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/doc/programs/text/Makefile-597- dir='$(DESTDIR)$(eprograms1dir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/doc/programs/text/Makefile-616- @list='$(eprograms2_DATA)'; test -n "$(eprograms2dir)" || list=; \
emboss-6.6.0+dfsg/doc/programs/text/Makefile:617: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/doc/programs/text/Makefile-618- dir='$(DESTDIR)$(eprograms2dir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/doc/programs/text/Makefile-628-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/doc/programs/text/Makefile:629: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/doc/programs/text/Makefile:630: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/doc/programs/text/Makefile-631- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/doc/programs/text/Makefile-642- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/doc/programs/text/Makefile:643: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/doc/programs/text/Makefile-644- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/doc/programs/text/nthseq.txt-226-$count=1;
emboss-6.6.0+dfsg/doc/programs/text/nthseq.txt:227:@list = `infoseq $ARGV[0] -auto -only -name`;
emboss-6.6.0+dfsg/doc/programs/text/nthseq.txt-228-while ($count <= $#list+1) {
emboss-6.6.0+dfsg/doc/programs/text/nthseq.txt:229: system("nthseq -auto $ARGV[0] -n $count $ARGV[1]-$count.seq");
emboss-6.6.0+dfsg/doc/programs/text/nthseq.txt-230- $count++;
##############################################
emboss-6.6.0+dfsg/doc/programs/text/Makefile.in-77- esac
emboss-6.6.0+dfsg/doc/programs/text/Makefile.in:78:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/doc/programs/text/Makefile.in-79-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/doc/programs/text/Makefile.in:80: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/doc/programs/text/Makefile.in-81- *) f=$$p;; \
emboss-6.6.0+dfsg/doc/programs/text/Makefile.in-82- esac;
emboss-6.6.0+dfsg/doc/programs/text/Makefile.in:83:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/doc/programs/text/Makefile.in-84-am__install_max = 40
emboss-6.6.0+dfsg/doc/programs/text/Makefile.in-85-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/doc/programs/text/Makefile.in:86: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/doc/programs/text/Makefile.in-87-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/doc/programs/text/Makefile.in-595- @list='$(eprograms1_DATA)'; test -n "$(eprograms1dir)" || list=; \
emboss-6.6.0+dfsg/doc/programs/text/Makefile.in:596: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/doc/programs/text/Makefile.in-597- dir='$(DESTDIR)$(eprograms1dir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/doc/programs/text/Makefile.in-616- @list='$(eprograms2_DATA)'; test -n "$(eprograms2dir)" || list=; \
emboss-6.6.0+dfsg/doc/programs/text/Makefile.in:617: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/doc/programs/text/Makefile.in-618- dir='$(DESTDIR)$(eprograms2dir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/doc/programs/text/Makefile.in-628-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/doc/programs/text/Makefile.in:629: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/doc/programs/text/Makefile.in:630: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/doc/programs/text/Makefile.in-631- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/doc/programs/text/Makefile.in-642- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/doc/programs/text/Makefile.in:643: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/doc/programs/text/Makefile.in-644- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/doc/programs/html/nthseq.html-701-$count=1;
emboss-6.6.0+dfsg/doc/programs/html/nthseq.html:702:@list = `infoseq $ARGV[0] -auto -only -name`;
emboss-6.6.0+dfsg/doc/programs/html/nthseq.html-703-while ($count <= $#list+1) {
emboss-6.6.0+dfsg/doc/programs/html/nthseq.html:704: system("nthseq -auto $ARGV[0] -n $count $ARGV[1]-$count.seq");
emboss-6.6.0+dfsg/doc/programs/html/nthseq.html-705- $count++;
##############################################
emboss-6.6.0+dfsg/doc/programs/html/Makefile-77- esac
emboss-6.6.0+dfsg/doc/programs/html/Makefile:78:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/doc/programs/html/Makefile-79-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/doc/programs/html/Makefile:80: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/doc/programs/html/Makefile-81- *) f=$$p;; \
emboss-6.6.0+dfsg/doc/programs/html/Makefile-82- esac;
emboss-6.6.0+dfsg/doc/programs/html/Makefile:83:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/doc/programs/html/Makefile-84-am__install_max = 40
emboss-6.6.0+dfsg/doc/programs/html/Makefile-85-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/doc/programs/html/Makefile:86: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/doc/programs/html/Makefile-87-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/doc/programs/html/Makefile-710- @list='$(egroups_DATA)'; test -n "$(egroupsdir)" || list=; \
emboss-6.6.0+dfsg/doc/programs/html/Makefile:711: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/doc/programs/html/Makefile-712- dir='$(DESTDIR)$(egroupsdir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/doc/programs/html/Makefile-731- @list='$(eimages_DATA)'; test -n "$(eimagesdir)" || list=; \
emboss-6.6.0+dfsg/doc/programs/html/Makefile:732: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/doc/programs/html/Makefile-733- dir='$(DESTDIR)$(eimagesdir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/doc/programs/html/Makefile-752- @list='$(eprograms1_DATA)'; test -n "$(eprograms1dir)" || list=; \
emboss-6.6.0+dfsg/doc/programs/html/Makefile:753: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/doc/programs/html/Makefile-754- dir='$(DESTDIR)$(eprograms1dir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/doc/programs/html/Makefile-773- @list='$(eprograms2_DATA)'; test -n "$(eprograms2dir)" || list=; \
emboss-6.6.0+dfsg/doc/programs/html/Makefile:774: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/doc/programs/html/Makefile-775- dir='$(DESTDIR)$(eprograms2dir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/doc/programs/html/Makefile-785-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/doc/programs/html/Makefile:786: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/doc/programs/html/Makefile:787: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/doc/programs/html/Makefile-788- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/doc/programs/html/Makefile-799- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/doc/programs/html/Makefile:800: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/doc/programs/html/Makefile-801- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in-77- esac
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in:78:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in-79-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in:80: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in-81- *) f=$$p;; \
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in-82- esac;
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in:83:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in-84-am__install_max = 40
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in-85-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in:86: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in-87-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in-710- @list='$(egroups_DATA)'; test -n "$(egroupsdir)" || list=; \
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in:711: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in-712- dir='$(DESTDIR)$(egroupsdir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in-731- @list='$(eimages_DATA)'; test -n "$(eimagesdir)" || list=; \
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in:732: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in-733- dir='$(DESTDIR)$(eimagesdir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in-752- @list='$(eprograms1_DATA)'; test -n "$(eprograms1dir)" || list=; \
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in:753: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in-754- dir='$(DESTDIR)$(eprograms1dir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in-773- @list='$(eprograms2_DATA)'; test -n "$(eprograms2dir)" || list=; \
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in:774: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in-775- dir='$(DESTDIR)$(eprograms2dir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in-785-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in:786: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in:787: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in-788- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in-799- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in:800: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/doc/programs/html/Makefile.in-801- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/doc/programs/Makefile-99- while test -n "$$dir1"; do \
emboss-6.6.0+dfsg/doc/programs/Makefile:100: first=`echo "$$dir1" | sed -e "$$sed_first"`; \
emboss-6.6.0+dfsg/doc/programs/Makefile-101- if test "$$first" != "."; then \
emboss-6.6.0+dfsg/doc/programs/Makefile-102- if test "$$first" = ".."; then \
emboss-6.6.0+dfsg/doc/programs/Makefile:103: dir2=`echo "$$dir0" | sed -e "$$sed_last"`/"$$dir2"; \
emboss-6.6.0+dfsg/doc/programs/Makefile:104: dir0=`echo "$$dir0" | sed -e "$$sed_butlast"`; \
emboss-6.6.0+dfsg/doc/programs/Makefile-105- else \
emboss-6.6.0+dfsg/doc/programs/Makefile:106: first2=`echo "$$dir2" | sed -e "$$sed_first"`; \
emboss-6.6.0+dfsg/doc/programs/Makefile-107- if test "$$first2" = "$$first"; then \
emboss-6.6.0+dfsg/doc/programs/Makefile:108: dir2=`echo "$$dir2" | sed -e "$$sed_rest"`; \
emboss-6.6.0+dfsg/doc/programs/Makefile-109- else \
##############################################
emboss-6.6.0+dfsg/doc/programs/Makefile-114- fi; \
emboss-6.6.0+dfsg/doc/programs/Makefile:115: dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \
emboss-6.6.0+dfsg/doc/programs/Makefile-116- done; \
##############################################
emboss-6.6.0+dfsg/doc/programs/Makefile-335- dot_seen=no; \
emboss-6.6.0+dfsg/doc/programs/Makefile:336: target=`echo $@ | sed s/-recursive//`; \
emboss-6.6.0+dfsg/doc/programs/Makefile-337- case "$@" in \
##############################################
emboss-6.6.0+dfsg/doc/programs/Makefile-425-GTAGS:
emboss-6.6.0+dfsg/doc/programs/Makefile:426: here=`$(am__cd) $(top_builddir) && pwd` \
emboss-6.6.0+dfsg/doc/programs/Makefile-427- && $(am__cd) $(top_srcdir) \
##############################################
emboss-6.6.0+dfsg/doc/programs/Makefile-447-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/doc/programs/Makefile:448: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/doc/programs/Makefile:449: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/doc/programs/Makefile-450- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/doc/programs/Makefile-461- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/doc/programs/Makefile:462: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/doc/programs/Makefile-463- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/doc/programs/Makefile.in-99- while test -n "$$dir1"; do \
emboss-6.6.0+dfsg/doc/programs/Makefile.in:100: first=`echo "$$dir1" | sed -e "$$sed_first"`; \
emboss-6.6.0+dfsg/doc/programs/Makefile.in-101- if test "$$first" != "."; then \
emboss-6.6.0+dfsg/doc/programs/Makefile.in-102- if test "$$first" = ".."; then \
emboss-6.6.0+dfsg/doc/programs/Makefile.in:103: dir2=`echo "$$dir0" | sed -e "$$sed_last"`/"$$dir2"; \
emboss-6.6.0+dfsg/doc/programs/Makefile.in:104: dir0=`echo "$$dir0" | sed -e "$$sed_butlast"`; \
emboss-6.6.0+dfsg/doc/programs/Makefile.in-105- else \
emboss-6.6.0+dfsg/doc/programs/Makefile.in:106: first2=`echo "$$dir2" | sed -e "$$sed_first"`; \
emboss-6.6.0+dfsg/doc/programs/Makefile.in-107- if test "$$first2" = "$$first"; then \
emboss-6.6.0+dfsg/doc/programs/Makefile.in:108: dir2=`echo "$$dir2" | sed -e "$$sed_rest"`; \
emboss-6.6.0+dfsg/doc/programs/Makefile.in-109- else \
##############################################
emboss-6.6.0+dfsg/doc/programs/Makefile.in-114- fi; \
emboss-6.6.0+dfsg/doc/programs/Makefile.in:115: dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \
emboss-6.6.0+dfsg/doc/programs/Makefile.in-116- done; \
##############################################
emboss-6.6.0+dfsg/doc/programs/Makefile.in-335- dot_seen=no; \
emboss-6.6.0+dfsg/doc/programs/Makefile.in:336: target=`echo $@ | sed s/-recursive//`; \
emboss-6.6.0+dfsg/doc/programs/Makefile.in-337- case "$@" in \
##############################################
emboss-6.6.0+dfsg/doc/programs/Makefile.in-425-GTAGS:
emboss-6.6.0+dfsg/doc/programs/Makefile.in:426: here=`$(am__cd) $(top_builddir) && pwd` \
emboss-6.6.0+dfsg/doc/programs/Makefile.in-427- && $(am__cd) $(top_srcdir) \
##############################################
emboss-6.6.0+dfsg/doc/programs/Makefile.in-447-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/doc/programs/Makefile.in:448: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/doc/programs/Makefile.in:449: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/doc/programs/Makefile.in-450- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/doc/programs/Makefile.in-461- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/doc/programs/Makefile.in:462: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/doc/programs/Makefile.in-463- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/doc/Makefile-99- while test -n "$$dir1"; do \
emboss-6.6.0+dfsg/doc/Makefile:100: first=`echo "$$dir1" | sed -e "$$sed_first"`; \
emboss-6.6.0+dfsg/doc/Makefile-101- if test "$$first" != "."; then \
emboss-6.6.0+dfsg/doc/Makefile-102- if test "$$first" = ".."; then \
emboss-6.6.0+dfsg/doc/Makefile:103: dir2=`echo "$$dir0" | sed -e "$$sed_last"`/"$$dir2"; \
emboss-6.6.0+dfsg/doc/Makefile:104: dir0=`echo "$$dir0" | sed -e "$$sed_butlast"`; \
emboss-6.6.0+dfsg/doc/Makefile-105- else \
emboss-6.6.0+dfsg/doc/Makefile:106: first2=`echo "$$dir2" | sed -e "$$sed_first"`; \
emboss-6.6.0+dfsg/doc/Makefile-107- if test "$$first2" = "$$first"; then \
emboss-6.6.0+dfsg/doc/Makefile:108: dir2=`echo "$$dir2" | sed -e "$$sed_rest"`; \
emboss-6.6.0+dfsg/doc/Makefile-109- else \
##############################################
emboss-6.6.0+dfsg/doc/Makefile-114- fi; \
emboss-6.6.0+dfsg/doc/Makefile:115: dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \
emboss-6.6.0+dfsg/doc/Makefile-116- done; \
##############################################
emboss-6.6.0+dfsg/doc/Makefile-335- dot_seen=no; \
emboss-6.6.0+dfsg/doc/Makefile:336: target=`echo $@ | sed s/-recursive//`; \
emboss-6.6.0+dfsg/doc/Makefile-337- case "$@" in \
##############################################
emboss-6.6.0+dfsg/doc/Makefile-425-GTAGS:
emboss-6.6.0+dfsg/doc/Makefile:426: here=`$(am__cd) $(top_builddir) && pwd` \
emboss-6.6.0+dfsg/doc/Makefile-427- && $(am__cd) $(top_srcdir) \
##############################################
emboss-6.6.0+dfsg/doc/Makefile-447-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/doc/Makefile:448: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/doc/Makefile:449: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/doc/Makefile-450- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/doc/Makefile-461- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/doc/Makefile:462: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/doc/Makefile-463- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/doc/tutorials/Makefile-77- esac
emboss-6.6.0+dfsg/doc/tutorials/Makefile:78:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/doc/tutorials/Makefile-79-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/doc/tutorials/Makefile:80: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/doc/tutorials/Makefile-81- *) f=$$p;; \
emboss-6.6.0+dfsg/doc/tutorials/Makefile-82- esac;
emboss-6.6.0+dfsg/doc/tutorials/Makefile:83:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/doc/tutorials/Makefile-84-am__install_max = 40
emboss-6.6.0+dfsg/doc/tutorials/Makefile-85-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/doc/tutorials/Makefile:86: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/doc/tutorials/Makefile-87-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/doc/tutorials/Makefile-334- @list='$(tutorials_DATA)'; test -n "$(tutorialsdir)" || list=; \
emboss-6.6.0+dfsg/doc/tutorials/Makefile:335: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/doc/tutorials/Makefile-336- dir='$(DESTDIR)$(tutorialsdir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/doc/tutorials/Makefile-346-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/doc/tutorials/Makefile:347: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/doc/tutorials/Makefile:348: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/doc/tutorials/Makefile-349- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/doc/tutorials/Makefile-360- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/doc/tutorials/Makefile:361: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/doc/tutorials/Makefile-362- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/doc/tutorials/Makefile.in-77- esac
emboss-6.6.0+dfsg/doc/tutorials/Makefile.in:78:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/doc/tutorials/Makefile.in-79-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/doc/tutorials/Makefile.in:80: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/doc/tutorials/Makefile.in-81- *) f=$$p;; \
emboss-6.6.0+dfsg/doc/tutorials/Makefile.in-82- esac;
emboss-6.6.0+dfsg/doc/tutorials/Makefile.in:83:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/doc/tutorials/Makefile.in-84-am__install_max = 40
emboss-6.6.0+dfsg/doc/tutorials/Makefile.in-85-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/doc/tutorials/Makefile.in:86: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/doc/tutorials/Makefile.in-87-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/doc/tutorials/Makefile.in-334- @list='$(tutorials_DATA)'; test -n "$(tutorialsdir)" || list=; \
emboss-6.6.0+dfsg/doc/tutorials/Makefile.in:335: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/doc/tutorials/Makefile.in-336- dir='$(DESTDIR)$(tutorialsdir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/doc/tutorials/Makefile.in-346-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/doc/tutorials/Makefile.in:347: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/doc/tutorials/Makefile.in:348: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/doc/tutorials/Makefile.in-349- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/doc/tutorials/Makefile.in-360- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/doc/tutorials/Makefile.in:361: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/doc/tutorials/Makefile.in-362- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/doc/Makefile.in-99- while test -n "$$dir1"; do \
emboss-6.6.0+dfsg/doc/Makefile.in:100: first=`echo "$$dir1" | sed -e "$$sed_first"`; \
emboss-6.6.0+dfsg/doc/Makefile.in-101- if test "$$first" != "."; then \
emboss-6.6.0+dfsg/doc/Makefile.in-102- if test "$$first" = ".."; then \
emboss-6.6.0+dfsg/doc/Makefile.in:103: dir2=`echo "$$dir0" | sed -e "$$sed_last"`/"$$dir2"; \
emboss-6.6.0+dfsg/doc/Makefile.in:104: dir0=`echo "$$dir0" | sed -e "$$sed_butlast"`; \
emboss-6.6.0+dfsg/doc/Makefile.in-105- else \
emboss-6.6.0+dfsg/doc/Makefile.in:106: first2=`echo "$$dir2" | sed -e "$$sed_first"`; \
emboss-6.6.0+dfsg/doc/Makefile.in-107- if test "$$first2" = "$$first"; then \
emboss-6.6.0+dfsg/doc/Makefile.in:108: dir2=`echo "$$dir2" | sed -e "$$sed_rest"`; \
emboss-6.6.0+dfsg/doc/Makefile.in-109- else \
##############################################
emboss-6.6.0+dfsg/doc/Makefile.in-114- fi; \
emboss-6.6.0+dfsg/doc/Makefile.in:115: dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \
emboss-6.6.0+dfsg/doc/Makefile.in-116- done; \
##############################################
emboss-6.6.0+dfsg/doc/Makefile.in-335- dot_seen=no; \
emboss-6.6.0+dfsg/doc/Makefile.in:336: target=`echo $@ | sed s/-recursive//`; \
emboss-6.6.0+dfsg/doc/Makefile.in-337- case "$@" in \
##############################################
emboss-6.6.0+dfsg/doc/Makefile.in-425-GTAGS:
emboss-6.6.0+dfsg/doc/Makefile.in:426: here=`$(am__cd) $(top_builddir) && pwd` \
emboss-6.6.0+dfsg/doc/Makefile.in-427- && $(am__cd) $(top_srcdir) \
##############################################
emboss-6.6.0+dfsg/doc/Makefile.in-447-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/doc/Makefile.in:448: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/doc/Makefile.in:449: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/doc/Makefile.in-450- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/doc/Makefile.in-461- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/doc/Makefile.in:462: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/doc/Makefile.in-463- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/config.guess-38-
emboss-6.6.0+dfsg/config.guess:39:me=`echo "$0" | sed -e 's,.*/,,'`
emboss-6.6.0+dfsg/config.guess-40-
##############################################
emboss-6.6.0+dfsg/config.guess-108-: ${TMPDIR=/tmp} ;
emboss-6.6.0+dfsg/config.guess:109: { tmp=`(umask 077 && mktemp -d "$TMPDIR/cgXXXXXX") 2>/dev/null` && test -n "$tmp" && test -d "$tmp" ; } ||
emboss-6.6.0+dfsg/config.guess-110- { test -n "$RANDOM" && tmp=$TMPDIR/cg$$-$RANDOM && (umask 077 && mkdir $tmp) ; } ||
##############################################
emboss-6.6.0+dfsg/config.guess-194- *)
emboss-6.6.0+dfsg/config.guess:195: release=`echo ${UNAME_RELEASE}|sed -e 's/[-_].*/\./'`
emboss-6.6.0+dfsg/config.guess-196- ;;
##############################################
emboss-6.6.0+dfsg/config.guess-221- *4.0)
emboss-6.6.0+dfsg/config.guess:222: UNAME_RELEASE=`/usr/sbin/sizer -v | awk '{print $3}'`
emboss-6.6.0+dfsg/config.guess-223- ;;
emboss-6.6.0+dfsg/config.guess-224- *5.*)
emboss-6.6.0+dfsg/config.guess:225: UNAME_RELEASE=`/usr/sbin/sizer -v | awk '{print $4}'`
emboss-6.6.0+dfsg/config.guess-226- ;;
##############################################
emboss-6.6.0+dfsg/config.guess-231- # types through head -n 1, so we only detect the type of CPU 0.
emboss-6.6.0+dfsg/config.guess:232: ALPHA_CPU_TYPE=`/usr/sbin/psrinfo -v | sed -n -e 's/^ The alpha \(.*\) processor.*$/\1/p' | head -n 1`
emboss-6.6.0+dfsg/config.guess-233- case "$ALPHA_CPU_TYPE" in
##############################################
emboss-6.6.0+dfsg/config.guess-269- # 1.2 uses "1.2" for uname -r.
emboss-6.6.0+dfsg/config.guess:270: echo ${UNAME_MACHINE}-dec-osf`echo ${UNAME_RELEASE} | sed -e 's/^[PVTX]//' | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz'`
emboss-6.6.0+dfsg/config.guess-271- # Reset EXIT trap before exiting to avoid spurious non-zero exit code.
##############################################
emboss-6.6.0+dfsg/config.guess-329- s390x:SunOS:*:*)
emboss-6.6.0+dfsg/config.guess:330: echo ${UNAME_MACHINE}-ibm-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
emboss-6.6.0+dfsg/config.guess-331- exit ;;
emboss-6.6.0+dfsg/config.guess-332- sun4H:SunOS:5.*:*)
emboss-6.6.0+dfsg/config.guess:333: echo sparc-hal-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
emboss-6.6.0+dfsg/config.guess-334- exit ;;
emboss-6.6.0+dfsg/config.guess-335- sun4*:SunOS:5.*:* | tadpole*:SunOS:5.*:*)
emboss-6.6.0+dfsg/config.guess:336: echo sparc-sun-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
emboss-6.6.0+dfsg/config.guess-337- exit ;;
##############################################
emboss-6.6.0+dfsg/config.guess-354- fi
emboss-6.6.0+dfsg/config.guess:355: echo ${SUN_ARCH}-pc-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
emboss-6.6.0+dfsg/config.guess-356- exit ;;
##############################################
emboss-6.6.0+dfsg/config.guess-360- # it's likely to be more like Solaris than SunOS4.
emboss-6.6.0+dfsg/config.guess:361: echo sparc-sun-solaris3`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
emboss-6.6.0+dfsg/config.guess-362- exit ;;
##############################################
emboss-6.6.0+dfsg/config.guess-369- # Japanese Language versions have a version number like `4.1.3-JL'.
emboss-6.6.0+dfsg/config.guess:370: echo sparc-sun-sunos`echo ${UNAME_RELEASE}|sed -e 's/-/_/'`
emboss-6.6.0+dfsg/config.guess-371- exit ;;
##############################################
emboss-6.6.0+dfsg/config.guess-375- sun*:*:4.2BSD:*)
emboss-6.6.0+dfsg/config.guess:376: UNAME_RELEASE=`(sed 1q /etc/motd | awk '{print substr($5,1,3)}') 2>/dev/null`
emboss-6.6.0+dfsg/config.guess-377- test "x${UNAME_RELEASE}" = "x" && UNAME_RELEASE=3
##############################################
emboss-6.6.0+dfsg/config.guess-457- $CC_FOR_BUILD -o $dummy $dummy.c &&
emboss-6.6.0+dfsg/config.guess:458: dummyarg=`echo "${UNAME_RELEASE}" | sed -n 's/\([0-9]*\).*/\1/p'` &&
emboss-6.6.0+dfsg/config.guess:459: SYSTEM_NAME=`$dummy $dummyarg` &&
emboss-6.6.0+dfsg/config.guess-460- { echo "$SYSTEM_NAME"; exit; }
##############################################
emboss-6.6.0+dfsg/config.guess-513- *:IRIX*:*:*)
emboss-6.6.0+dfsg/config.guess:514: echo mips-sgi-irix`echo ${UNAME_RELEASE}|sed -e 's/-/_/g'`
emboss-6.6.0+dfsg/config.guess-515- exit ;;
##############################################
emboss-6.6.0+dfsg/config.guess-543-EOF
emboss-6.6.0+dfsg/config.guess:544: if $CC_FOR_BUILD -o $dummy $dummy.c && SYSTEM_NAME=`$dummy`
emboss-6.6.0+dfsg/config.guess-545- then
##############################################
emboss-6.6.0+dfsg/config.guess-556- *:AIX:*:[4567])
emboss-6.6.0+dfsg/config.guess:557: IBM_CPU_ID=`/usr/sbin/lsdev -C -c processor -S available | sed 1q | awk '{ print $1 }'`
emboss-6.6.0+dfsg/config.guess-558- if /usr/sbin/lsattr -El ${IBM_CPU_ID} | grep ' POWER' >/dev/null 2>&1; then
##############################################
emboss-6.6.0+dfsg/config.guess-591- 9000/[34678]??:HP-UX:*:*)
emboss-6.6.0+dfsg/config.guess:592: HPUX_REV=`echo ${UNAME_RELEASE}|sed -e 's/[^.]*.[0B]*//'`
emboss-6.6.0+dfsg/config.guess-593- case "${UNAME_MACHINE}" in
##############################################
emboss-6.6.0+dfsg/config.guess-645-EOF
emboss-6.6.0+dfsg/config.guess:646: (CCOPTS= $CC_FOR_BUILD -o $dummy $dummy.c 2>/dev/null) && HP_ARCH=`$dummy`
emboss-6.6.0+dfsg/config.guess-647- test -z "$HP_ARCH" && HP_ARCH=hppa
##############################################
emboss-6.6.0+dfsg/config.guess-673- ia64:HP-UX:*:*)
emboss-6.6.0+dfsg/config.guess:674: HPUX_REV=`echo ${UNAME_RELEASE}|sed -e 's/[^.]*.[0B]*//'`
emboss-6.6.0+dfsg/config.guess-675- echo ia64-hp-hpux${HPUX_REV}
##############################################
emboss-6.6.0+dfsg/config.guess-703-EOF
emboss-6.6.0+dfsg/config.guess:704: $CC_FOR_BUILD -o $dummy $dummy.c && SYSTEM_NAME=`$dummy` &&
emboss-6.6.0+dfsg/config.guess-705- { echo "$SYSTEM_NAME"; exit; }
##############################################
emboss-6.6.0+dfsg/config.guess-774- FUJITSU_SYS=`uname -p | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/\///'`
emboss-6.6.0+dfsg/config.guess:775: FUJITSU_REL=`echo ${UNAME_RELEASE} | sed -e 's/ /_/'`
emboss-6.6.0+dfsg/config.guess-776- echo "${FUJITSU_PROC}-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}"
##############################################
emboss-6.6.0+dfsg/config.guess-779- FUJITSU_SYS=`uname -p | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/\///'`
emboss-6.6.0+dfsg/config.guess:780: FUJITSU_REL=`echo ${UNAME_RELEASE} | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/ /_/'`
emboss-6.6.0+dfsg/config.guess-781- echo "sparc-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}"
##############################################
emboss-6.6.0+dfsg/config.guess-795- amd64)
emboss-6.6.0+dfsg/config.guess:796: echo x86_64-unknown-freebsd`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'` ;;
emboss-6.6.0+dfsg/config.guess-797- *)
emboss-6.6.0+dfsg/config.guess:798: echo ${UNAME_PROCESSOR}-unknown-freebsd`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'` ;;
emboss-6.6.0+dfsg/config.guess-799- esac
##############################################
emboss-6.6.0+dfsg/config.guess-850- prep*:SunOS:5.*:*)
emboss-6.6.0+dfsg/config.guess:851: echo powerpcle-unknown-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
emboss-6.6.0+dfsg/config.guess-852- exit ;;
##############################################
emboss-6.6.0+dfsg/config.guess-854- # the GNU system
emboss-6.6.0+dfsg/config.guess:855: echo `echo ${UNAME_MACHINE}|sed -e 's,[-/].*$,,'`-unknown-gnu`echo ${UNAME_RELEASE}|sed -e 's,/.*$,,'`
emboss-6.6.0+dfsg/config.guess-856- exit ;;
##############################################
emboss-6.6.0+dfsg/config.guess-858- # other systems with GNU libc and userland
emboss-6.6.0+dfsg/config.guess:859: echo ${UNAME_MACHINE}-unknown-`echo ${UNAME_SYSTEM} | sed 's,^[^/]*/,,' | tr '[A-Z]' '[a-z]'``echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'`-gnu
emboss-6.6.0+dfsg/config.guess-860- exit ;;
##############################################
emboss-6.6.0+dfsg/config.guess-923-EOF
emboss-6.6.0+dfsg/config.guess:924: eval `$CC_FOR_BUILD -E $dummy.c 2>/dev/null | grep '^LIBC'`
emboss-6.6.0+dfsg/config.guess-925- echo "${UNAME_MACHINE}-pc-linux-${LIBC}"
##############################################
emboss-6.6.0+dfsg/config.guess-951-EOF
emboss-6.6.0+dfsg/config.guess:952: eval `$CC_FOR_BUILD -E $dummy.c 2>/dev/null | grep '^CPU'`
emboss-6.6.0+dfsg/config.guess-953- test x"${CPU}" != x && { echo "${CPU}-unknown-linux-gnu"; exit; }
##############################################
emboss-6.6.0+dfsg/config.guess-1036- i*86:*:4.*:* | i*86:SYSTEM_V:4.*:*)
emboss-6.6.0+dfsg/config.guess:1037: UNAME_REL=`echo ${UNAME_RELEASE} | sed 's/\/MP$//'`
emboss-6.6.0+dfsg/config.guess-1038- if grep Novell /usr/include/link.h >/dev/null 2>/dev/null; then
##############################################
emboss-6.6.0+dfsg/config.guess-1306- *:DragonFly:*:*)
emboss-6.6.0+dfsg/config.guess:1307: echo ${UNAME_MACHINE}-unknown-dragonfly`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'`
emboss-6.6.0+dfsg/config.guess-1308- exit ;;
##############################################
emboss-6.6.0+dfsg/config.guess-1319- i*86:skyos:*:*)
emboss-6.6.0+dfsg/config.guess:1320: echo ${UNAME_MACHINE}-pc-skyos`echo ${UNAME_RELEASE}` | sed -e 's/ .*$//'
emboss-6.6.0+dfsg/config.guess-1321- exit ;;
##############################################
emboss-6.6.0+dfsg/config.guess-1450-
emboss-6.6.0+dfsg/config.guess:1451:$CC_FOR_BUILD -o $dummy $dummy.c 2>/dev/null && SYSTEM_NAME=`$dummy` &&
emboss-6.6.0+dfsg/config.guess-1452- { echo "$SYSTEM_NAME"; exit; }
##############################################
emboss-6.6.0+dfsg/scripts/createnewdocumentation.pl-47- if ($ans =~ /^y/) {
emboss-6.6.0+dfsg/scripts/createnewdocumentation.pl:48: system("cp $docdir/template.html.save $progdocdir/$thisprogram.html");
emboss-6.6.0+dfsg/scripts/createnewdocumentation.pl-49- system "perl -p -i -e 's/ProgramNameToBeReplaced/$thisprogram/g;' $progdocdir/$thisprogram.html";
##############################################
emboss-6.6.0+dfsg/scripts/createnewdocumentation.pl-51- if (defined $ENV{'EDITOR'} && $ENV{'EDITOR'} ne "") {
emboss-6.6.0+dfsg/scripts/createnewdocumentation.pl:52: system("$ENV{'EDITOR'} $progdocdir/$thisprogram.html");
emboss-6.6.0+dfsg/scripts/createnewdocumentation.pl-53- open (INDEX2, ">> $indexfile") || die "Cannot open $indexfile\n";
##############################################
emboss-6.6.0+dfsg/scripts/createnewdocumentation.pl-60- close (INDEX2);
emboss-6.6.0+dfsg/scripts/createnewdocumentation.pl:61: system("$ENV{'EDITOR'} $progdocdir/index.html");
emboss-6.6.0+dfsg/scripts/createnewdocumentation.pl-62- }
##############################################
emboss-6.6.0+dfsg/scripts/makeexample.pl-618-
emboss-6.6.0+dfsg/scripts/makeexample.pl:619: $filetype = `file $path`;
emboss-6.6.0+dfsg/scripts/makeexample.pl-620-
##############################################
emboss-6.6.0+dfsg/scripts/makeexample.pl-637- # add -delay to see the first page of an animated gif for 10 mins
emboss-6.6.0+dfsg/scripts/makeexample.pl:638: system("2>&1 convert -delay 65535 -rotate '$rotate' $path $giffile >/dev/null");
emboss-6.6.0+dfsg/scripts/makeexample.pl-639- $file = $giffile;
##############################################
emboss-6.6.0+dfsg/scripts/makeexample.pl-645- $giffile =~ s/\.([a-z]+)ps/.$1.gif/;
emboss-6.6.0+dfsg/scripts/makeexample.pl:646: system("2>&1 convert -delay 65535 -rotate '-90<' $path $giffile >/dev/null");
emboss-6.6.0+dfsg/scripts/makeexample.pl-647- $file = $giffile;
##############################################
emboss-6.6.0+dfsg/scripts/makeexample.pl-654-# add -delay to see the first page of an animated gif for 10 mins
emboss-6.6.0+dfsg/scripts/makeexample.pl:655: system("2>&1 convert -delay 65535 -rotate '-90<' $path $giffile >/dev/null");
emboss-6.6.0+dfsg/scripts/makeexample.pl-656- $file = $giffile;
##############################################
emboss-6.6.0+dfsg/scripts/makeexample.pl-662-# add -delay to see the first page of an animated gif for 10 mins
emboss-6.6.0+dfsg/scripts/makeexample.pl:663: system("2>&1 convert -delay 65535 -rotate '-90<' $path $giffile >/dev/null");
emboss-6.6.0+dfsg/scripts/makeexample.pl-664- $file = $giffile;
##############################################
emboss-6.6.0+dfsg/scripts/makeexample.pl-669- $newfile = "$application.$count.$file";
emboss-6.6.0+dfsg/scripts/makeexample.pl:670: system("cp $path $docdir/$newfile");
emboss-6.6.0+dfsg/scripts/makeexample.pl-671- chmod 0664, "$docdir/$newfile";
##############################################
emboss-6.6.0+dfsg/scripts/makeexample.pl-716- $ofile = pop @o;
emboss-6.6.0+dfsg/scripts/makeexample.pl:717: system ("diff $ofile $path> diff.tmp");
emboss-6.6.0+dfsg/scripts/makeexample.pl-718- if ( -s "diff.tmp" ) {
##############################################
emboss-6.6.0+dfsg/scripts/makeexample.pl-776- if (!$testkeep{$dotest}) {
emboss-6.6.0+dfsg/scripts/makeexample.pl:777: system ("rm -rf $dotest");
emboss-6.6.0+dfsg/scripts/makeexample.pl-778- }
##############################################
emboss-6.6.0+dfsg/scripts/makeexample.pl-940- if ($usa =~ /T?EDAM\:/i) {
emboss-6.6.0+dfsg/scripts/makeexample.pl:941: system ("ontoget $usa z.z -obsolete -auto");
emboss-6.6.0+dfsg/scripts/makeexample.pl-942- }
emboss-6.6.0+dfsg/scripts/makeexample.pl-943- elsif ($usa =~ /T?TAX(-nam)?\:/i) {
emboss-6.6.0+dfsg/scripts/makeexample.pl:944: system ("taxget $usa z.z -auto");
emboss-6.6.0+dfsg/scripts/makeexample.pl-945- }
emboss-6.6.0+dfsg/scripts/makeexample.pl-946- elsif ($usa =~ /T?DRCAT\:/i) {
emboss-6.6.0+dfsg/scripts/makeexample.pl:947: system ("drget $usa z.z -auto");
emboss-6.6.0+dfsg/scripts/makeexample.pl-948- }
emboss-6.6.0+dfsg/scripts/makeexample.pl-949- elsif ($usa =~ /srs\:unilib\:/i) {
emboss-6.6.0+dfsg/scripts/makeexample.pl:950: system ("textget $usa z.z -auto");
emboss-6.6.0+dfsg/scripts/makeexample.pl-951- }
emboss-6.6.0+dfsg/scripts/makeexample.pl-952- elsif ($usa !~ /\:\:/ && $usa =~ /\S\:/) {
emboss-6.6.0+dfsg/scripts/makeexample.pl:953: system ("entret $usa z.z -auto");
emboss-6.6.0+dfsg/scripts/makeexample.pl-954- }
emboss-6.6.0+dfsg/scripts/makeexample.pl-955- elsif ($usa =~ /\:\:/) {
emboss-6.6.0+dfsg/scripts/makeexample.pl:956: system ("seqret $usa z.z -auto");
emboss-6.6.0+dfsg/scripts/makeexample.pl-957- }
##############################################
emboss-6.6.0+dfsg/scripts/qatest.pl-66-
emboss-6.6.0+dfsg/scripts/qatest.pl:67:sub qatestsystem($$$){
emboss-6.6.0+dfsg/scripts/qatest.pl-68- my ($pp, $cmd, $qq) = @_;
##############################################
emboss-6.6.0+dfsg/scripts/qatest.pl-70- if(!$iswindows) {
emboss-6.6.0+dfsg/scripts/qatest.pl:71: $sysstat = system("$pp $cmd $qq");
emboss-6.6.0+dfsg/scripts/qatest.pl-72- return $sysstat;
##############################################
emboss-6.6.0+dfsg/scripts/qatest.pl-194- if($iswindows){
emboss-6.6.0+dfsg/scripts/qatest.pl:195: $sysstat = system( "rmdir /s /q $testid");
emboss-6.6.0+dfsg/scripts/qatest.pl-196- } else {
emboss-6.6.0+dfsg/scripts/qatest.pl:197: $sysstat = system( "rm -rf $testid");
emboss-6.6.0+dfsg/scripts/qatest.pl-198- }
##############################################
emboss-6.6.0+dfsg/scripts/qatest.pl-472-# print STDERR "$cmdstr\n";
emboss-6.6.0+dfsg/scripts/qatest.pl:473: $sysstat = qatestsystem("$domcheck$ppcmd", "$cmdstr", "$qqcmd");
emboss-6.6.0+dfsg/scripts/qatest.pl-474- alarm(0);
##############################################
emboss-6.6.0+dfsg/scripts/qatest.pl-1150- if($iswindows){
emboss-6.6.0+dfsg/scripts/qatest.pl:1151: $sysstat = system( "rmdir /s /q $id");
emboss-6.6.0+dfsg/scripts/qatest.pl-1152- } else {
emboss-6.6.0+dfsg/scripts/qatest.pl:1153: $sysstat = system( "rm -rf $id");
emboss-6.6.0+dfsg/scripts/qatest.pl-1154- }
##############################################
emboss-6.6.0+dfsg/scripts/qatest.pl-1179- if($iswindows) {
emboss-6.6.0+dfsg/scripts/qatest.pl:1180: $sysstat = system( "rmdir /s /q $id");
emboss-6.6.0+dfsg/scripts/qatest.pl-1181- }
emboss-6.6.0+dfsg/scripts/qatest.pl-1182- else {
emboss-6.6.0+dfsg/scripts/qatest.pl:1183: $sysstat = system( "rm -rf $id");
emboss-6.6.0+dfsg/scripts/qatest.pl-1184- }
##############################################
emboss-6.6.0+dfsg/scripts/edithtml.pl-120- } else {
emboss-6.6.0+dfsg/scripts/edithtml.pl:121: system("cp $docdir/template.html.save $docdir/$application.html");
emboss-6.6.0+dfsg/scripts/edithtml.pl-122- system "perl -p -i -e 's/ProgramNameToBeReplaced/$application/g;' $docdir/$application.html";
##############################################
emboss-6.6.0+dfsg/scripts/edithtml.pl-125-}
emboss-6.6.0+dfsg/scripts/edithtml.pl:126:system("$editor $docdir/$application.html");
emboss-6.6.0+dfsg/scripts/edithtml.pl-127-
##############################################
emboss-6.6.0+dfsg/scripts/edithtml.pl-180- close (INDEX);
emboss-6.6.0+dfsg/scripts/edithtml.pl:181: system("$editor $docdir/index.html");
emboss-6.6.0+dfsg/scripts/edithtml.pl-182-}
##############################################
emboss-6.6.0+dfsg/scripts/edithtml.pl-227-#chdir "/packages/emboss_dev/$ENV{'USER'}/emboss/emboss/scripts";
emboss-6.6.0+dfsg/scripts/edithtml.pl:228:system("$scripts/makeMake.pl"); # no parameter == do text
emboss-6.6.0+dfsg/scripts/edithtml.pl:229:system("$scripts/makeMake.pl html");
emboss-6.6.0+dfsg/scripts/edithtml.pl-230-
##############################################
emboss-6.6.0+dfsg/scripts/autodoc.pl-359- }
emboss-6.6.0+dfsg/scripts/autodoc.pl:360: system ("diff -b $afile $bfile > z.z");
emboss-6.6.0+dfsg/scripts/autodoc.pl-361- $s = (-s "z.z");
##############################################
emboss-6.6.0+dfsg/scripts/autodoc.pl-673- if ($ans =~ /^y/) {
emboss-6.6.0+dfsg/scripts/autodoc.pl:674: system("cp $progdocdir/template.html.save $progdocdir/$thisprogram.html");
emboss-6.6.0+dfsg/scripts/autodoc.pl-675- system "perl -p -i -e 's/ProgramNameToBeReplaced/$thisprogram/g;' $progdocdir/$thisprogram.html";
##############################################
emboss-6.6.0+dfsg/scripts/autodoc.pl-682-";
emboss-6.6.0+dfsg/scripts/autodoc.pl:683: system("$ENV{'EDITOR'} $progdocdir/$thisprogram.html");
emboss-6.6.0+dfsg/scripts/autodoc.pl-684- open (INDEX2, ">> $indexfile") || die "Cannot open $indexfile\n";
##############################################
emboss-6.6.0+dfsg/scripts/autodoc.pl-696-";
emboss-6.6.0+dfsg/scripts/autodoc.pl:697: system("$ENV{'EDITOR'} $progdocdir/index.html");
emboss-6.6.0+dfsg/scripts/autodoc.pl-698- }
##############################################
emboss-6.6.0+dfsg/scripts/autodoc.pl-756- if ($ans =~ /^y/) {
emboss-6.6.0+dfsg/scripts/autodoc.pl:757: system("cp $progdocdir/template.html.save $progdocdir/$thisprogram.html");
emboss-6.6.0+dfsg/scripts/autodoc.pl-758- system "perl -p -i -e 's/ProgramNameToBeReplaced/$thisprogram/g;' $progdocdir/$thisprogram.html";
##############################################
emboss-6.6.0+dfsg/scripts/autodoc.pl-765-";
emboss-6.6.0+dfsg/scripts/autodoc.pl:766: system("$ENV{'EDITOR'} $progdocdir/$thisprogram.html");
emboss-6.6.0+dfsg/scripts/autodoc.pl-767- open (INDEX2, ">> $indexfile") || die "Cannot open $indexfile\n";
##############################################
emboss-6.6.0+dfsg/scripts/autodoc.pl-780-";
emboss-6.6.0+dfsg/scripts/autodoc.pl:781: system("$ENV{'EDITOR'} $progdocdir/index.html");
emboss-6.6.0+dfsg/scripts/autodoc.pl-782- }
##############################################
emboss-6.6.0+dfsg/scripts/autodoc.pl-1023- if (-e "$sfprogdocdir/$thisprogram.html") {
emboss-6.6.0+dfsg/scripts/autodoc.pl:1024: system("diff -b $cvsdoc/html/$thisprogram.html $sfprogdocdir/$thisprogram.html > z.z");
emboss-6.6.0+dfsg/scripts/autodoc.pl-1025- $s = (-s "z.z");
##############################################
emboss-6.6.0+dfsg/scripts/autodoc.pl-1053- if (-e "$sfedir/$thisprogram.html") {
emboss-6.6.0+dfsg/scripts/autodoc.pl:1054: system("diff -b $edir/$thisprogram.html $sfedir/$thisprogram.html > z.z");
emboss-6.6.0+dfsg/scripts/autodoc.pl-1055- $s = (-s "z.z");
##############################################
emboss-6.6.0+dfsg/scripts/autodoc.pl-1187- foreach $gf (@giffiles) {
emboss-6.6.0+dfsg/scripts/autodoc.pl:1188: system("cp $docmaster/$gf g.g");
emboss-6.6.0+dfsg/scripts/autodoc.pl-1189- filediff("$dochtml/$gf", "g.g");
emboss-6.6.0+dfsg/scripts/autodoc.pl:1190: system("cp $docmaster/$gf g.g");
emboss-6.6.0+dfsg/scripts/autodoc.pl-1191- filediff("$sfprogdocdir/$gf", "g.g");
##############################################
emboss-6.6.0+dfsg/scripts/autodoc.pl-1206- if (-e "$sfprogdocdir/$thisprogram.html") {
emboss-6.6.0+dfsg/scripts/autodoc.pl:1207: system("diff -b $cvsdoc/html/$thisprogram.html $sfprogdocdir/$thisprogram.html > z.z");
emboss-6.6.0+dfsg/scripts/autodoc.pl-1208- $s = (-s "z.z");
##############################################
emboss-6.6.0+dfsg/scripts/autodoc.pl-1229- if (-e "$sfedir/$thisprogram.html") {
emboss-6.6.0+dfsg/scripts/autodoc.pl:1230: system("diff -b $edir/$thisprogram.html $sfedir/$thisprogram.html > z.z");
emboss-6.6.0+dfsg/scripts/autodoc.pl-1231- $s = (-s "z.z");
##############################################
emboss-6.6.0+dfsg/scripts/autodoc.pl-1516-#print "Create make files\n";
emboss-6.6.0+dfsg/scripts/autodoc.pl:1517:#system("$scripts/makeMake.pl"); # no parameter == do text
emboss-6.6.0+dfsg/scripts/autodoc.pl:1518:#system("$scripts/makeMake.pl html"); # any parameter == do html
emboss-6.6.0+dfsg/scripts/autodoc.pl-1519-
##############################################
emboss-6.6.0+dfsg/scripts/valgrind.pl-86- $starttime = time();
emboss-6.6.0+dfsg/scripts/valgrind.pl:87: $sysstat = system( "rm -rf $name");
emboss-6.6.0+dfsg/scripts/valgrind.pl-88- $status = $sysstat >> 8;
##############################################
emboss-6.6.0+dfsg/scripts/valgrind.pl-92- }
emboss-6.6.0+dfsg/scripts/valgrind.pl:93: if(-e "$name" && -d "$name") { system ("rm -rf $name");}
emboss-6.6.0+dfsg/scripts/valgrind.pl-94- mkdir ("$name", 0777);
##############################################
emboss-6.6.0+dfsg/scripts/valgrind.pl-98- foreach $pc (@pc) {
emboss-6.6.0+dfsg/scripts/valgrind.pl:99: system ("$pc");
emboss-6.6.0+dfsg/scripts/valgrind.pl-100- }
##############################################
emboss-6.6.0+dfsg/scripts/valgrind.pl-105- if($dodebug) {$debugstr = "EMBOSS_DEBUG=Y ;export EMBOSS_DEBUG"}
emboss-6.6.0+dfsg/scripts/valgrind.pl:106: $sysstat = system ("$debugstr EMBOSSRC=../.. ;export EMBOSSRC ;EMBOSS_RCHOME=N ;export EMBOSS_RCHOME ;valgrind $valgopts $myvalgpath$tests{$name} $infile 9> ../valgrind/$name.valgrind 2> stderr > stdout" );
emboss-6.6.0+dfsg/scripts/valgrind.pl-107- alarm(0);
##############################################
emboss-6.6.0+dfsg/scripts/third.pl-33- alarm($timeout);
emboss-6.6.0+dfsg/scripts/third.pl:34: $sysstat = system ("third $thirdopts $myvalgpath$tests{$name}" );
emboss-6.6.0+dfsg/scripts/third.pl-35- alarm(0);
##############################################
emboss-6.6.0+dfsg/scripts/makesummary.pl-16-
emboss-6.6.0+dfsg/scripts/makesummary.pl:17:$myerr = int(`egrep -c 'undefined reference|error:' $ENV{HOME}/out/emboss.out`);
emboss-6.6.0+dfsg/scripts/makesummary.pl:18:$mywarn = int(`grep -c warning: $ENV{HOME}/out/emboss.out`);
emboss-6.6.0+dfsg/scripts/makesummary.pl-19-$tote = $myerr;
##############################################
emboss-6.6.0+dfsg/scripts/makesummary.pl-39- $name = $1;
emboss-6.6.0+dfsg/scripts/makesummary.pl:40: $myerr = int(`grep -c 'undefined reference|error:' $ENV{HOME}/out/embassy-$name.out`);
emboss-6.6.0+dfsg/scripts/makesummary.pl:41: $mywarn = int(`grep -c warning: $ENV{HOME}/out/embassy-$name.out`);
emboss-6.6.0+dfsg/scripts/makesummary.pl-42- $tote += $myerr;
##############################################
emboss-6.6.0+dfsg/scripts/purify.pl-8- print "Running $purepath$tests{$name}\n";
emboss-6.6.0+dfsg/scripts/purify.pl:9: $status = system ("$purepath$tests{$name}");
emboss-6.6.0+dfsg/scripts/purify.pl-10-
##############################################
emboss-6.6.0+dfsg/scripts/makehistory.pl-34- chdir "/packages/emboss_dev/$ENV{'USER'}/emboss/emboss/emboss/";
emboss-6.6.0+dfsg/scripts/makehistory.pl:35: system("cvs log *.c >$apps");
emboss-6.6.0+dfsg/scripts/makehistory.pl-36-
##############################################
emboss-6.6.0+dfsg/scripts/makehistory.pl-40- chdir "/packages/emboss_dev/$ENV{'USER'}/emboss/emboss/emboss/acd/";
emboss-6.6.0+dfsg/scripts/makehistory.pl:41: system("cvs log *.acd >$acds");
emboss-6.6.0+dfsg/scripts/makehistory.pl-42-
##############################################
emboss-6.6.0+dfsg/scripts/makehistory.pl-52- if (-f $acd) {
emboss-6.6.0+dfsg/scripts/makehistory.pl:53: system("cat $acd >> $app");
emboss-6.6.0+dfsg/scripts/makehistory.pl:54: system("sort $app > $app.sorted");
emboss-6.6.0+dfsg/scripts/makehistory.pl-55- if (open(SORT, "< $app.sorted")) {
##############################################
emboss-6.6.0+dfsg/jemboss/resources/Makefile.in-76- esac
emboss-6.6.0+dfsg/jemboss/resources/Makefile.in:77:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/jemboss/resources/Makefile.in-78-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/jemboss/resources/Makefile.in:79: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/jemboss/resources/Makefile.in-80- *) f=$$p;; \
emboss-6.6.0+dfsg/jemboss/resources/Makefile.in-81- esac;
emboss-6.6.0+dfsg/jemboss/resources/Makefile.in:82:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/jemboss/resources/Makefile.in-83-am__install_max = 40
emboss-6.6.0+dfsg/jemboss/resources/Makefile.in-84-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/jemboss/resources/Makefile.in:85: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/jemboss/resources/Makefile.in-86-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/jemboss/resources/Makefile.in-335- @list='$(pkgdata_DATA)'; test -n "$(pkgdatadir)" || list=; \
emboss-6.6.0+dfsg/jemboss/resources/Makefile.in:336: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/jemboss/resources/Makefile.in-337- dir='$(DESTDIR)$(pkgdatadir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/jemboss/resources/Makefile.in-347-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/jemboss/resources/Makefile.in:348: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/jemboss/resources/Makefile.in:349: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/jemboss/resources/Makefile.in-350- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/jemboss/resources/Makefile.in-361- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/jemboss/resources/Makefile.in:362: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/jemboss/resources/Makefile.in-363- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/jemboss/utils/makeFileManagerJNLP.sh-40- else
emboss-6.6.0+dfsg/jemboss/utils/makeFileManagerJNLP.sh:41: JAVA_HOME_TMP=`dirname $JAVA_HOME_TMP`
emboss-6.6.0+dfsg/jemboss/utils/makeFileManagerJNLP.sh:42: JAVA_HOME_TMP=`dirname $JAVA_HOME_TMP`
emboss-6.6.0+dfsg/jemboss/utils/makeFileManagerJNLP.sh-43- fi
##############################################
emboss-6.6.0+dfsg/jemboss/utils/makeJNLP.sh-40- else
emboss-6.6.0+dfsg/jemboss/utils/makeJNLP.sh:41: JAVA_HOME_TMP=`dirname $JAVA_HOME_TMP`
emboss-6.6.0+dfsg/jemboss/utils/makeJNLP.sh:42: JAVA_HOME_TMP=`dirname $JAVA_HOME_TMP`
emboss-6.6.0+dfsg/jemboss/utils/makeJNLP.sh-43- fi
##############################################
emboss-6.6.0+dfsg/jemboss/utils/makeJNLP.sh-54-
emboss-6.6.0+dfsg/jemboss/utils/makeJNLP.sh:55:CWPWD=`dirname $PWD`
emboss-6.6.0+dfsg/jemboss/utils/makeJNLP.sh:56:CWPWD2=`dirname $CWPWD`
emboss-6.6.0+dfsg/jemboss/utils/makeJNLP.sh-57-
##############################################
emboss-6.6.0+dfsg/jemboss/utils/Makefile.in-77- esac
emboss-6.6.0+dfsg/jemboss/utils/Makefile.in:78:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/jemboss/utils/Makefile.in-79-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/jemboss/utils/Makefile.in:80: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/jemboss/utils/Makefile.in-81- *) f=$$p;; \
emboss-6.6.0+dfsg/jemboss/utils/Makefile.in-82- esac;
emboss-6.6.0+dfsg/jemboss/utils/Makefile.in:83:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/jemboss/utils/Makefile.in-84-am__install_max = 40
emboss-6.6.0+dfsg/jemboss/utils/Makefile.in-85-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/jemboss/utils/Makefile.in:86: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/jemboss/utils/Makefile.in-87-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/jemboss/utils/Makefile.in-338- @list='$(jembossutils_DATA)'; test -n "$(jembossutilsdir)" || list=; \
emboss-6.6.0+dfsg/jemboss/utils/Makefile.in:339: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/jemboss/utils/Makefile.in-340- dir='$(DESTDIR)$(jembossutilsdir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/jemboss/utils/Makefile.in-350-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/jemboss/utils/Makefile.in:351: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/jemboss/utils/Makefile.in:352: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/jemboss/utils/Makefile.in-353- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/jemboss/utils/Makefile.in-364- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/jemboss/utils/Makefile.in:365: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/jemboss/utils/Makefile.in-366- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh-39- else
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh:40: JAVA_HOME_TMP=`dirname $JAVA_HOME_TMP`
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh:41: JAVA_HOME_TMP=`dirname $JAVA_HOME_TMP`
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh-42- fi
##############################################
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh-56- if (test "$CLUSTALW" != ""); then
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh:57: CLUSTALW=`dirname $CLUSTALW`
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh-58- echo "Enter the path to the clustalw or press return to use the"
##############################################
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh-88- if (test "$PRIMER3" != ""); then
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh:89: PRIMER3=`dirname $PRIMER3`
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh-90- echo "Enter the path to the primer3_core or press return to use the"
##############################################
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh-213-
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh:214: SECURITY=`sed -n -e 's|^security.provider.\([0-9]\)=com.sun.net.ssl.internal.ssl.Provider|security|p' $JAVA_HOME/jre/lib/security/java.security`
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh-215-
##############################################
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh-238-
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh:239: TCVERSION=`sed -n -e 's|\(.*\)Running The Tomcat 4\(.*\)|4|p' $TOMCAT_ROOT/RUNNING.txt`
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh-240-
##############################################
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh-243-
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh:244: TCVERSION=`sed -n -e 's|\(.*\)Running The Tomcat 5.5\(.*\)|5|p' $TOMCAT_ROOT/RUNNING.txt`
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh-245-
##############################################
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh-287-
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh:288: TCVERSION=`sed -n -e 's|\(.*\)Running The Apache Tomcat 6.0\(.*\)|6|p' $TOMCAT_ROOT/RUNNING.txt`
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh-289-
##############################################
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh-524- else
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh:525: for lib_dir in `echo "$include_lib_dirs"` ;
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh-526- do
##############################################
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh-541- else
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh:542: DIR=`echo $USER_CONFIG | sed -n -e 's|\(.*\)--with-pngdriver=\([^ ]*\)\(.*\)|\2|p'`
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh-543- fi
##############################################
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh-559- else
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh:560: for lib_dir in `echo "$lib_dirs"` ;
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh-561- do
##############################################
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh-599- else
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh:600: for lib_dir in `echo "$lib_dirs"` ;
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh-601- do
##############################################
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh-646- WARN="true"
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh:647: for lib_dir in `echo "$lib_dirs"` ;
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh-648- do
##############################################
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh-943-EMBOSS_DOWNLOAD_TMP=`pwd`
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh:944:EMBOSS_DOWNLOAD_TMP=`dirname $EMBOSS_DOWNLOAD_TMP`
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh:945:EMBOSS_DOWNLOAD_TMP=`dirname $EMBOSS_DOWNLOAD_TMP`
emboss-6.6.0+dfsg/jemboss/utils/install-jemboss-server.sh-946-
##############################################
emboss-6.6.0+dfsg/jemboss/lib/axis/Makefile.in-77- esac
emboss-6.6.0+dfsg/jemboss/lib/axis/Makefile.in:78:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/jemboss/lib/axis/Makefile.in-79-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/jemboss/lib/axis/Makefile.in:80: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/jemboss/lib/axis/Makefile.in-81- *) f=$$p;; \
emboss-6.6.0+dfsg/jemboss/lib/axis/Makefile.in-82- esac;
emboss-6.6.0+dfsg/jemboss/lib/axis/Makefile.in:83:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/jemboss/lib/axis/Makefile.in-84-am__install_max = 40
emboss-6.6.0+dfsg/jemboss/lib/axis/Makefile.in-85-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/jemboss/lib/axis/Makefile.in:86: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/jemboss/lib/axis/Makefile.in-87-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/jemboss/lib/axis/Makefile.in-339- @list='$(jembosslibaxis_DATA)'; test -n "$(jembosslibaxisdir)" || list=; \
emboss-6.6.0+dfsg/jemboss/lib/axis/Makefile.in:340: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/jemboss/lib/axis/Makefile.in-341- dir='$(DESTDIR)$(jembosslibaxisdir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/jemboss/lib/axis/Makefile.in-351-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/jemboss/lib/axis/Makefile.in:352: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/jemboss/lib/axis/Makefile.in:353: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/jemboss/lib/axis/Makefile.in-354- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/jemboss/lib/axis/Makefile.in-365- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/jemboss/lib/axis/Makefile.in:366: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/jemboss/lib/axis/Makefile.in-367- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in-84- esac
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in:85:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in-86-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in:87: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in-88- *) f=$$p;; \
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in-89- esac;
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in:90:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in-91-am__install_max = 40
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in-92-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in:93: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in-94-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in-129- while test -n "$$dir1"; do \
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in:130: first=`echo "$$dir1" | sed -e "$$sed_first"`; \
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in-131- if test "$$first" != "."; then \
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in-132- if test "$$first" = ".."; then \
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in:133: dir2=`echo "$$dir0" | sed -e "$$sed_last"`/"$$dir2"; \
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in:134: dir0=`echo "$$dir0" | sed -e "$$sed_butlast"`; \
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in-135- else \
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in:136: first2=`echo "$$dir2" | sed -e "$$sed_first"`; \
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in-137- if test "$$first2" = "$$first"; then \
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in:138: dir2=`echo "$$dir2" | sed -e "$$sed_rest"`; \
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in-139- else \
##############################################
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in-144- fi; \
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in:145: dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in-146- done; \
##############################################
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in-377- @list='$(jembosslib_DATA)'; test -n "$(jembosslibdir)" || list=; \
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in:378: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in-379- dir='$(DESTDIR)$(jembosslibdir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in-395- dot_seen=no; \
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in:396: target=`echo $@ | sed s/-recursive//`; \
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in-397- case "$@" in \
##############################################
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in-485-GTAGS:
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in:486: here=`$(am__cd) $(top_builddir) && pwd` \
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in-487- && $(am__cd) $(top_srcdir) \
##############################################
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in-507-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in:508: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in:509: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in-510- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in-521- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in:522: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/jemboss/lib/Makefile.in-523- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/jemboss/images/Makefile.in-77- esac
emboss-6.6.0+dfsg/jemboss/images/Makefile.in:78:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/jemboss/images/Makefile.in-79-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/jemboss/images/Makefile.in:80: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/jemboss/images/Makefile.in-81- *) f=$$p;; \
emboss-6.6.0+dfsg/jemboss/images/Makefile.in-82- esac;
emboss-6.6.0+dfsg/jemboss/images/Makefile.in:83:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/jemboss/images/Makefile.in-84-am__install_max = 40
emboss-6.6.0+dfsg/jemboss/images/Makefile.in-85-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/jemboss/images/Makefile.in:86: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/jemboss/images/Makefile.in-87-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/jemboss/images/Makefile.in-341- @list='$(jembossimages_DATA)'; test -n "$(jembossimagesdir)" || list=; \
emboss-6.6.0+dfsg/jemboss/images/Makefile.in:342: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/jemboss/images/Makefile.in-343- dir='$(DESTDIR)$(jembossimagesdir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/jemboss/images/Makefile.in-353-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/jemboss/images/Makefile.in:354: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/jemboss/images/Makefile.in:355: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/jemboss/images/Makefile.in-356- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/jemboss/images/Makefile.in-367- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/jemboss/images/Makefile.in:368: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/jemboss/images/Makefile.in-369- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/jemboss/Makefile.in-71-CONFIG_CLEAN_VPATH_FILES =
emboss-6.6.0+dfsg/jemboss/Makefile.in:72:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/jemboss/Makefile.in-73-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/jemboss/Makefile.in:74: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/jemboss/Makefile.in-75- *) f=$$p;; \
emboss-6.6.0+dfsg/jemboss/Makefile.in-76- esac;
emboss-6.6.0+dfsg/jemboss/Makefile.in:77:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/jemboss/Makefile.in-78-am__install_max = 40
emboss-6.6.0+dfsg/jemboss/Makefile.in-79-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/jemboss/Makefile.in:80: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/jemboss/Makefile.in-81-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/jemboss/Makefile.in-131- while test -n "$$dir1"; do \
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emboss-6.6.0+dfsg/jemboss/Makefile.in-133- if test "$$first" != "."; then \
emboss-6.6.0+dfsg/jemboss/Makefile.in-134- if test "$$first" = ".."; then \
emboss-6.6.0+dfsg/jemboss/Makefile.in:135: dir2=`echo "$$dir0" | sed -e "$$sed_last"`/"$$dir2"; \
emboss-6.6.0+dfsg/jemboss/Makefile.in:136: dir0=`echo "$$dir0" | sed -e "$$sed_butlast"`; \
emboss-6.6.0+dfsg/jemboss/Makefile.in-137- else \
emboss-6.6.0+dfsg/jemboss/Makefile.in:138: first2=`echo "$$dir2" | sed -e "$$sed_first"`; \
emboss-6.6.0+dfsg/jemboss/Makefile.in-139- if test "$$first2" = "$$first"; then \
emboss-6.6.0+dfsg/jemboss/Makefile.in:140: dir2=`echo "$$dir2" | sed -e "$$sed_rest"`; \
emboss-6.6.0+dfsg/jemboss/Makefile.in-141- else \
##############################################
emboss-6.6.0+dfsg/jemboss/Makefile.in-146- fi; \
emboss-6.6.0+dfsg/jemboss/Makefile.in:147: dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \
emboss-6.6.0+dfsg/jemboss/Makefile.in-148- done; \
##############################################
emboss-6.6.0+dfsg/jemboss/Makefile.in-405- esac; \
emboss-6.6.0+dfsg/jemboss/Makefile.in:406: f=`echo "$$p" | sed 's,^.*/,,;$(transform)'`; \
emboss-6.6.0+dfsg/jemboss/Makefile.in-407- for opt in --help --version; do \
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emboss-6.6.0+dfsg/jemboss/Makefile.in-409- 2>c$${pid}_.err </dev/null \
emboss-6.6.0+dfsg/jemboss/Makefile.in:410: && test -n "`cat c$${pid}_.out`" \
emboss-6.6.0+dfsg/jemboss/Makefile.in:411: && test -z "`cat c$${pid}_.err`"; then :; \
emboss-6.6.0+dfsg/jemboss/Makefile.in-412- else echo "$$f does not support $$opt" 1>&2; bad=1; fi; \
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emboss-6.6.0+dfsg/jemboss/Makefile.in-439- @list='$(pkgdata_DATA)'; test -n "$(pkgdatadir)" || list=; \
emboss-6.6.0+dfsg/jemboss/Makefile.in:440: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/jemboss/Makefile.in-441- dir='$(DESTDIR)$(pkgdatadir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/jemboss/Makefile.in-457- dot_seen=no; \
emboss-6.6.0+dfsg/jemboss/Makefile.in:458: target=`echo $@ | sed s/-recursive//`; \
emboss-6.6.0+dfsg/jemboss/Makefile.in-459- case "$@" in \
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emboss-6.6.0+dfsg/jemboss/Makefile.in-547-GTAGS:
emboss-6.6.0+dfsg/jemboss/Makefile.in:548: here=`$(am__cd) $(top_builddir) && pwd` \
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emboss-6.6.0+dfsg/jemboss/Makefile.in-569-distdir: $(DISTFILES)
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emboss-6.6.0+dfsg/jemboss/Makefile.in:571: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
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emboss-6.6.0+dfsg/jemboss/Makefile.in-583- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/jemboss/Makefile.in:584: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
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emboss-6.6.0+dfsg/plplot/lib/Makefile.in-78- esac
emboss-6.6.0+dfsg/plplot/lib/Makefile.in:79:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/plplot/lib/Makefile.in-80-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/plplot/lib/Makefile.in:81: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/plplot/lib/Makefile.in-82- *) f=$$p;; \
emboss-6.6.0+dfsg/plplot/lib/Makefile.in-83- esac;
emboss-6.6.0+dfsg/plplot/lib/Makefile.in:84:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/plplot/lib/Makefile.in-85-am__install_max = 40
emboss-6.6.0+dfsg/plplot/lib/Makefile.in-86-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/plplot/lib/Makefile.in:87: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/plplot/lib/Makefile.in-88-am__nobase_strip = \
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emboss-6.6.0+dfsg/plplot/lib/Makefile.in-332- @list='$(dist_pkgdata_DATA)'; test -n "$(pkgdatadir)" || list=; \
emboss-6.6.0+dfsg/plplot/lib/Makefile.in:333: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/plplot/lib/Makefile.in-334- dir='$(DESTDIR)$(pkgdatadir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/plplot/lib/Makefile.in-344-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/plplot/lib/Makefile.in:345: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/plplot/lib/Makefile.in:346: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/plplot/lib/Makefile.in-347- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/plplot/lib/Makefile.in-358- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/plplot/lib/Makefile.in:359: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/plplot/lib/Makefile.in-360- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/plplot/plargs.c-1160- if (getenv("PAGER") != NULL)
emboss-6.6.0+dfsg/plplot/plargs.c:1161: pager = (FILE *) popen("$PAGER", "w");
emboss-6.6.0+dfsg/plplot/plargs.c-1162- if (pager == NULL)
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emboss-6.6.0+dfsg/plplot/Makefile.in-71-CONFIG_CLEAN_VPATH_FILES =
emboss-6.6.0+dfsg/plplot/Makefile.in:72:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/plplot/Makefile.in-73-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/plplot/Makefile.in:74: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/plplot/Makefile.in-75- *) f=$$p;; \
emboss-6.6.0+dfsg/plplot/Makefile.in-76- esac;
emboss-6.6.0+dfsg/plplot/Makefile.in:77:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/plplot/Makefile.in-78-am__install_max = 40
emboss-6.6.0+dfsg/plplot/Makefile.in-79-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/plplot/Makefile.in:80: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/plplot/Makefile.in-81-am__nobase_strip = \
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emboss-6.6.0+dfsg/plplot/Makefile.in-157- while test -n "$$dir1"; do \
emboss-6.6.0+dfsg/plplot/Makefile.in:158: first=`echo "$$dir1" | sed -e "$$sed_first"`; \
emboss-6.6.0+dfsg/plplot/Makefile.in-159- if test "$$first" != "."; then \
emboss-6.6.0+dfsg/plplot/Makefile.in-160- if test "$$first" = ".."; then \
emboss-6.6.0+dfsg/plplot/Makefile.in:161: dir2=`echo "$$dir0" | sed -e "$$sed_last"`/"$$dir2"; \
emboss-6.6.0+dfsg/plplot/Makefile.in:162: dir0=`echo "$$dir0" | sed -e "$$sed_butlast"`; \
emboss-6.6.0+dfsg/plplot/Makefile.in-163- else \
emboss-6.6.0+dfsg/plplot/Makefile.in:164: first2=`echo "$$dir2" | sed -e "$$sed_first"`; \
emboss-6.6.0+dfsg/plplot/Makefile.in-165- if test "$$first2" = "$$first"; then \
emboss-6.6.0+dfsg/plplot/Makefile.in:166: dir2=`echo "$$dir2" | sed -e "$$sed_rest"`; \
emboss-6.6.0+dfsg/plplot/Makefile.in-167- else \
##############################################
emboss-6.6.0+dfsg/plplot/Makefile.in-172- fi; \
emboss-6.6.0+dfsg/plplot/Makefile.in:173: dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \
emboss-6.6.0+dfsg/plplot/Makefile.in-174- done; \
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emboss-6.6.0+dfsg/plplot/Makefile.in:532: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/plplot/Makefile.in-533- dir='$(DESTDIR)$(pkgincludedir)'; $(am__uninstall_files_from_dir)
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emboss-6.6.0+dfsg/plplot/Makefile.in-549- dot_seen=no; \
emboss-6.6.0+dfsg/plplot/Makefile.in:550: target=`echo $@ | sed s/-recursive//`; \
emboss-6.6.0+dfsg/plplot/Makefile.in-551- case "$@" in \
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emboss-6.6.0+dfsg/plplot/Makefile.in-639-GTAGS:
emboss-6.6.0+dfsg/plplot/Makefile.in:640: here=`$(am__cd) $(top_builddir) && pwd` \
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emboss-6.6.0+dfsg/plplot/Makefile.in-661-distdir: $(DISTFILES)
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emboss-6.6.0+dfsg/nucleus/Makefile.in-83-CONFIG_CLEAN_VPATH_FILES =
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emboss-6.6.0+dfsg/nucleus/Makefile.in-85-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/nucleus/Makefile.in:86: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/nucleus/Makefile.in-87- *) f=$$p;; \
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emboss-6.6.0+dfsg/nucleus/Makefile.in-90-am__install_max = 40
emboss-6.6.0+dfsg/nucleus/Makefile.in-91-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/nucleus/Makefile.in:92: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
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emboss-6.6.0+dfsg/nucleus/Makefile.in:629:@am__fastdepCC_FALSE@ $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(libnucleus_la_CPPFLAGS) $(CPPFLAGS) $(libnucleus_la_CFLAGS) $(CFLAGS) -c -o libnucleus_la-embpat.lo `test -f 'embpat.c' || echo '$(srcdir)/'`embpat.c
emboss-6.6.0+dfsg/nucleus/Makefile.in-630-
emboss-6.6.0+dfsg/nucleus/Makefile.in-631-libnucleus_la-embpatlist.lo: embpatlist.c
emboss-6.6.0+dfsg/nucleus/Makefile.in:632:@am__fastdepCC_TRUE@ $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(libnucleus_la_CPPFLAGS) $(CPPFLAGS) $(libnucleus_la_CFLAGS) $(CFLAGS) -MT libnucleus_la-embpatlist.lo -MD -MP -MF $(DEPDIR)/libnucleus_la-embpatlist.Tpo -c -o libnucleus_la-embpatlist.lo `test -f 'embpatlist.c' || echo '$(srcdir)/'`embpatlist.c
emboss-6.6.0+dfsg/nucleus/Makefile.in-633-@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/libnucleus_la-embpatlist.Tpo $(DEPDIR)/libnucleus_la-embpatlist.Plo
##############################################
emboss-6.6.0+dfsg/nucleus/Makefile.in-635-@AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
emboss-6.6.0+dfsg/nucleus/Makefile.in:636:@am__fastdepCC_FALSE@ $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(libnucleus_la_CPPFLAGS) $(CPPFLAGS) $(libnucleus_la_CFLAGS) $(CFLAGS) -c -o libnucleus_la-embpatlist.lo `test -f 'embpatlist.c' || echo '$(srcdir)/'`embpatlist.c
emboss-6.6.0+dfsg/nucleus/Makefile.in-637-
emboss-6.6.0+dfsg/nucleus/Makefile.in-638-libnucleus_la-embprop.lo: embprop.c
emboss-6.6.0+dfsg/nucleus/Makefile.in:639:@am__fastdepCC_TRUE@ $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(libnucleus_la_CPPFLAGS) $(CPPFLAGS) $(libnucleus_la_CFLAGS) $(CFLAGS) -MT libnucleus_la-embprop.lo -MD -MP -MF $(DEPDIR)/libnucleus_la-embprop.Tpo -c -o libnucleus_la-embprop.lo `test -f 'embprop.c' || echo '$(srcdir)/'`embprop.c
emboss-6.6.0+dfsg/nucleus/Makefile.in-640-@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/libnucleus_la-embprop.Tpo $(DEPDIR)/libnucleus_la-embprop.Plo
##############################################
emboss-6.6.0+dfsg/nucleus/Makefile.in-642-@AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
emboss-6.6.0+dfsg/nucleus/Makefile.in:643:@am__fastdepCC_FALSE@ $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(libnucleus_la_CPPFLAGS) $(CPPFLAGS) $(libnucleus_la_CFLAGS) $(CFLAGS) -c -o libnucleus_la-embprop.lo `test -f 'embprop.c' || echo '$(srcdir)/'`embprop.c
emboss-6.6.0+dfsg/nucleus/Makefile.in-644-
emboss-6.6.0+dfsg/nucleus/Makefile.in-645-libnucleus_la-embpdb.lo: embpdb.c
emboss-6.6.0+dfsg/nucleus/Makefile.in:646:@am__fastdepCC_TRUE@ $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(libnucleus_la_CPPFLAGS) $(CPPFLAGS) $(libnucleus_la_CFLAGS) $(CFLAGS) -MT libnucleus_la-embpdb.lo -MD -MP -MF $(DEPDIR)/libnucleus_la-embpdb.Tpo -c -o libnucleus_la-embpdb.lo `test -f 'embpdb.c' || echo '$(srcdir)/'`embpdb.c
emboss-6.6.0+dfsg/nucleus/Makefile.in-647-@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/libnucleus_la-embpdb.Tpo $(DEPDIR)/libnucleus_la-embpdb.Plo
##############################################
emboss-6.6.0+dfsg/nucleus/Makefile.in-649-@AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
emboss-6.6.0+dfsg/nucleus/Makefile.in:650:@am__fastdepCC_FALSE@ $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(libnucleus_la_CPPFLAGS) $(CPPFLAGS) $(libnucleus_la_CFLAGS) $(CFLAGS) -c -o libnucleus_la-embpdb.lo `test -f 'embpdb.c' || echo '$(srcdir)/'`embpdb.c
emboss-6.6.0+dfsg/nucleus/Makefile.in-651-
emboss-6.6.0+dfsg/nucleus/Makefile.in-652-libnucleus_la-embread.lo: embread.c
emboss-6.6.0+dfsg/nucleus/Makefile.in:653:@am__fastdepCC_TRUE@ $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(libnucleus_la_CPPFLAGS) $(CPPFLAGS) $(libnucleus_la_CFLAGS) $(CFLAGS) -MT libnucleus_la-embread.lo -MD -MP -MF $(DEPDIR)/libnucleus_la-embread.Tpo -c -o libnucleus_la-embread.lo `test -f 'embread.c' || echo '$(srcdir)/'`embread.c
emboss-6.6.0+dfsg/nucleus/Makefile.in-654-@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/libnucleus_la-embread.Tpo $(DEPDIR)/libnucleus_la-embread.Plo
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emboss-6.6.0+dfsg/nucleus/Makefile.in-656-@AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
emboss-6.6.0+dfsg/nucleus/Makefile.in:657:@am__fastdepCC_FALSE@ $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(libnucleus_la_CPPFLAGS) $(CPPFLAGS) $(libnucleus_la_CFLAGS) $(CFLAGS) -c -o libnucleus_la-embread.lo `test -f 'embread.c' || echo '$(srcdir)/'`embread.c
emboss-6.6.0+dfsg/nucleus/Makefile.in-658-
emboss-6.6.0+dfsg/nucleus/Makefile.in-659-libnucleus_la-embsig.lo: embsig.c
emboss-6.6.0+dfsg/nucleus/Makefile.in:660:@am__fastdepCC_TRUE@ $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(libnucleus_la_CPPFLAGS) $(CPPFLAGS) $(libnucleus_la_CFLAGS) $(CFLAGS) -MT libnucleus_la-embsig.lo -MD -MP -MF $(DEPDIR)/libnucleus_la-embsig.Tpo -c -o libnucleus_la-embsig.lo `test -f 'embsig.c' || echo '$(srcdir)/'`embsig.c
emboss-6.6.0+dfsg/nucleus/Makefile.in-661-@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/libnucleus_la-embsig.Tpo $(DEPDIR)/libnucleus_la-embsig.Plo
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emboss-6.6.0+dfsg/nucleus/Makefile.in-663-@AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
emboss-6.6.0+dfsg/nucleus/Makefile.in:664:@am__fastdepCC_FALSE@ $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(libnucleus_la_CPPFLAGS) $(CPPFLAGS) $(libnucleus_la_CFLAGS) $(CFLAGS) -c -o libnucleus_la-embsig.lo `test -f 'embsig.c' || echo '$(srcdir)/'`embsig.c
emboss-6.6.0+dfsg/nucleus/Makefile.in-665-
emboss-6.6.0+dfsg/nucleus/Makefile.in-666-libnucleus_la-embshow.lo: embshow.c
emboss-6.6.0+dfsg/nucleus/Makefile.in:667:@am__fastdepCC_TRUE@ $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(libnucleus_la_CPPFLAGS) $(CPPFLAGS) $(libnucleus_la_CFLAGS) $(CFLAGS) -MT libnucleus_la-embshow.lo -MD -MP -MF $(DEPDIR)/libnucleus_la-embshow.Tpo -c -o libnucleus_la-embshow.lo `test -f 'embshow.c' || echo '$(srcdir)/'`embshow.c
emboss-6.6.0+dfsg/nucleus/Makefile.in-668-@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/libnucleus_la-embshow.Tpo $(DEPDIR)/libnucleus_la-embshow.Plo
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emboss-6.6.0+dfsg/nucleus/Makefile.in-670-@AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
emboss-6.6.0+dfsg/nucleus/Makefile.in:671:@am__fastdepCC_FALSE@ $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(libnucleus_la_CPPFLAGS) $(CPPFLAGS) $(libnucleus_la_CFLAGS) $(CFLAGS) -c -o libnucleus_la-embshow.lo `test -f 'embshow.c' || echo '$(srcdir)/'`embshow.c
emboss-6.6.0+dfsg/nucleus/Makefile.in-672-
emboss-6.6.0+dfsg/nucleus/Makefile.in-673-libnucleus_la-embword.lo: embword.c
emboss-6.6.0+dfsg/nucleus/Makefile.in:674:@am__fastdepCC_TRUE@ $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(libnucleus_la_CPPFLAGS) $(CPPFLAGS) $(libnucleus_la_CFLAGS) $(CFLAGS) -MT libnucleus_la-embword.lo -MD -MP -MF $(DEPDIR)/libnucleus_la-embword.Tpo -c -o libnucleus_la-embword.lo `test -f 'embword.c' || echo '$(srcdir)/'`embword.c
emboss-6.6.0+dfsg/nucleus/Makefile.in-675-@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/libnucleus_la-embword.Tpo $(DEPDIR)/libnucleus_la-embword.Plo
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emboss-6.6.0+dfsg/nucleus/Makefile.in-677-@AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
emboss-6.6.0+dfsg/nucleus/Makefile.in:678:@am__fastdepCC_FALSE@ $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(libnucleus_la_CPPFLAGS) $(CPPFLAGS) $(libnucleus_la_CFLAGS) $(CFLAGS) -c -o libnucleus_la-embword.lo `test -f 'embword.c' || echo '$(srcdir)/'`embword.c
emboss-6.6.0+dfsg/nucleus/Makefile.in-679-
##############################################
emboss-6.6.0+dfsg/nucleus/Makefile.in-703- @list='$(include_HEADERS)'; test -n "$(includedir)" || list=; \
emboss-6.6.0+dfsg/nucleus/Makefile.in:704: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/nucleus/Makefile.in-705- dir='$(DESTDIR)$(includedir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/nucleus/Makefile.in-751-GTAGS:
emboss-6.6.0+dfsg/nucleus/Makefile.in:752: here=`$(am__cd) $(top_builddir) && pwd` \
emboss-6.6.0+dfsg/nucleus/Makefile.in-753- && $(am__cd) $(top_srcdir) \
##############################################
emboss-6.6.0+dfsg/nucleus/Makefile.in-773-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/nucleus/Makefile.in:774: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/nucleus/Makefile.in:775: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/nucleus/Makefile.in-776- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/nucleus/Makefile.in-787- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/nucleus/Makefile.in:788: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/nucleus/Makefile.in-789- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/depcomp-72- sed 's|[^\\/]*$|'${DEPDIR-.deps}'/&|;s|\.\([^.]*\)$|.P\1|;s|Pobj$|Po|'`}
emboss-6.6.0+dfsg/depcomp:73:tmpdepfile=${tmpdepfile-`echo "$depfile" | sed 's/\.\([^.]*\)$/.T\1/'`}
emboss-6.6.0+dfsg/depcomp-74-
##############################################
emboss-6.6.0+dfsg/depcomp-248- # Version 6 uses the directory in both cases.
emboss-6.6.0+dfsg/depcomp:249: dir=`echo "$object" | sed -e 's|/[^/]*$|/|'`
emboss-6.6.0+dfsg/depcomp-250- test "x$dir" = "x$object" && dir=
emboss-6.6.0+dfsg/depcomp:251: base=`echo "$object" | sed -e 's|^.*/||' -e 's/\.o$//' -e 's/\.lo$//'`
emboss-6.6.0+dfsg/depcomp-252- if test "$libtool" = yes; then
##############################################
emboss-6.6.0+dfsg/depcomp-343- # Much of this is similar to the tru64 case; see comments there.
emboss-6.6.0+dfsg/depcomp:344: dir=`echo "$object" | sed -e 's|/[^/]*$|/|'`
emboss-6.6.0+dfsg/depcomp-345- test "x$dir" = "x$object" && dir=
emboss-6.6.0+dfsg/depcomp:346: base=`echo "$object" | sed -e 's|^.*/||' -e 's/\.o$//' -e 's/\.lo$//'`
emboss-6.6.0+dfsg/depcomp-347- if test "$libtool" = yes; then
##############################################
emboss-6.6.0+dfsg/depcomp-387- # Subdirectories are respected.
emboss-6.6.0+dfsg/depcomp:388: dir=`echo "$object" | sed -e 's|/[^/]*$|/|'`
emboss-6.6.0+dfsg/depcomp-389- test "x$dir" = "x$object" && dir=
emboss-6.6.0+dfsg/depcomp:390: base=`echo "$object" | sed -e 's|^.*/||' -e 's/\.o$//' -e 's/\.lo$//'`
emboss-6.6.0+dfsg/depcomp-391-
##############################################
emboss-6.6.0+dfsg/depcomp-577- done
emboss-6.6.0+dfsg/depcomp:578: obj_suffix=`echo "$object" | sed 's/^.*\././'`
emboss-6.6.0+dfsg/depcomp-579- touch "$tmpdepfile"
##############################################
emboss-6.6.0+dfsg/m4/ltsugar.m4-67-m4_define([lt_combine],
emboss-6.6.0+dfsg/m4/ltsugar.m4:68:[m4_if(m4_eval([$# > 3]), [1],
emboss-6.6.0+dfsg/m4/ltsugar.m4-69- [m4_pushdef([_Lt_sep], [m4_define([_Lt_sep], m4_defn([lt_car]))])]]dnl
##############################################
emboss-6.6.0+dfsg/m4/pkg.m4-74- PKG_CHECK_EXISTS([$3],
emboss-6.6.0+dfsg/m4/pkg.m4:75: [pkg_cv_[]$1=`$PKG_CONFIG --[]$2 "$3" 2>/dev/null`],
emboss-6.6.0+dfsg/m4/pkg.m4-76- [pkg_failed=yes])
##############################################
emboss-6.6.0+dfsg/m4/pkg.m4-122- if test $_pkg_short_errors_supported = yes; then
emboss-6.6.0+dfsg/m4/pkg.m4:123: $1[]_PKG_ERRORS=`$PKG_CONFIG --short-errors --print-errors "$2" 2>&1`
emboss-6.6.0+dfsg/m4/pkg.m4-124- else
emboss-6.6.0+dfsg/m4/pkg.m4:125: $1[]_PKG_ERRORS=`$PKG_CONFIG --print-errors "$2" 2>&1`
emboss-6.6.0+dfsg/m4/pkg.m4-126- fi
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-125-done
emboss-6.6.0+dfsg/m4/libtool.m4:126:cc_basename=`$ECHO "$cc_temp" | $SED "s%.*/%%; s%^$host_alias-%%"`
emboss-6.6.0+dfsg/m4/libtool.m4-127-])
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-427-m4_define([_LT_CONFIG_STATUS_DECLARE],
emboss-6.6.0+dfsg/m4/libtool.m4:428:[$1='`$ECHO "$][$1" | $SED "$delay_single_quote_subst"`'])
emboss-6.6.0+dfsg/m4/libtool.m4-429-
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-437-#
emboss-6.6.0+dfsg/m4/libtool.m4:438:# <var>='`$ECHO "$<var>" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/m4/libtool.m4-439-m4_defun([_LT_CONFIG_STATUS_DECLARATIONS],
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-547-]], lt_decl_quote_varnames); do
emboss-6.6.0+dfsg/m4/libtool.m4:548: case \`eval \\\\\$ECHO \\\\""\\\\\$\$var"\\\\"\` in
emboss-6.6.0+dfsg/m4/libtool.m4-549- *[[\\\\\\\`\\"\\\$]]*)
emboss-6.6.0+dfsg/m4/libtool.m4:550: eval "lt_\$var=\\\\\\"\\\`\\\$ECHO \\"\\\$\$var\\" | \\\$SED \\"\\\$sed_quote_subst\\"\\\`\\\\\\""
emboss-6.6.0+dfsg/m4/libtool.m4-551- ;;
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-560-]], lt_decl_dquote_varnames); do
emboss-6.6.0+dfsg/m4/libtool.m4:561: case \`eval \\\\\$ECHO \\\\""\\\\\$\$var"\\\\"\` in
emboss-6.6.0+dfsg/m4/libtool.m4-562- *[[\\\\\\\`\\"\\\$]]*)
emboss-6.6.0+dfsg/m4/libtool.m4:563: eval "lt_\$var=\\\\\\"\\\`\\\$ECHO \\"\\\$\$var\\" | \\\$SED -e \\"\\\$double_quote_subst\\" -e \\"\\\$sed_quote_subst\\" -e \\"\\\$delay_variable_subst\\"\\\`\\\\\\""
emboss-6.6.0+dfsg/m4/libtool.m4-564- ;;
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-720-
emboss-6.6.0+dfsg/m4/libtool.m4:721:# `$ECHO "$ofile" | sed 's%^.*/%%'` - Provide generalized library-building support services.
emboss-6.6.0+dfsg/m4/libtool.m4-722-# Generated automatically by $as_me ($PACKAGE$TIMESTAMP) $VERSION
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-1090- if test "$lt_cv_ld_force_load" = "yes"; then
emboss-6.6.0+dfsg/m4/libtool.m4:1091: _LT_TAGVAR(whole_archive_flag_spec, $1)='`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience ${wl}-force_load,$conv\"; done; func_echo_all \"$new_convenience\"`'
emboss-6.6.0+dfsg/m4/libtool.m4-1092- m4_case([$1], [F77], [_LT_TAGVAR(compiler_needs_object, $1)=yes],
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-1143- }]'
emboss-6.6.0+dfsg/m4/libtool.m4:1144: _LT_TAGVAR([lt_cv_aix_libpath_], [$1])=`dump -H conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
emboss-6.6.0+dfsg/m4/libtool.m4-1145- # Check for a 64-bit object if we didn't find anything.
emboss-6.6.0+dfsg/m4/libtool.m4-1146- if test -z "$_LT_TAGVAR([lt_cv_aix_libpath_], [$1])"; then
emboss-6.6.0+dfsg/m4/libtool.m4:1147: _LT_TAGVAR([lt_cv_aix_libpath_], [$1])=`dump -HX64 conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
emboss-6.6.0+dfsg/m4/libtool.m4-1148- fi],[])
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-1179-if test "X`( print -r -- -n ) 2>/dev/null`" = X-n && \
emboss-6.6.0+dfsg/m4/libtool.m4:1180: test "X`print -r -- $ECHO 2>/dev/null`" = "X$ECHO"; then
emboss-6.6.0+dfsg/m4/libtool.m4-1181- ECHO='print -r --'
emboss-6.6.0+dfsg/m4/libtool.m4:1182:elif test "X`printf %s $ECHO 2>/dev/null`" = "X$ECHO"; then
emboss-6.6.0+dfsg/m4/libtool.m4-1183- ECHO='printf %s\n'
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-1214- PATH=/empty FPATH=/empty; export PATH FPATH
emboss-6.6.0+dfsg/m4/libtool.m4:1215: test "X`printf %s $ECHO`" = "X$ECHO" \
emboss-6.6.0+dfsg/m4/libtool.m4:1216: || test "X`print -r -- $ECHO`" = "X$ECHO" )])])
emboss-6.6.0+dfsg/m4/libtool.m4-1217-
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-1237- if test "$GCC" = yes; then
emboss-6.6.0+dfsg/m4/libtool.m4:1238: lt_sysroot=`$CC --print-sysroot 2>/dev/null`
emboss-6.6.0+dfsg/m4/libtool.m4-1239- fi
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-1241- /*)
emboss-6.6.0+dfsg/m4/libtool.m4:1242: lt_sysroot=`echo "$with_sysroot" | sed -e "$sed_quote_subst"`
emboss-6.6.0+dfsg/m4/libtool.m4-1243- ;; #(
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-1270- if AC_TRY_EVAL(ac_compile); then
emboss-6.6.0+dfsg/m4/libtool.m4:1271: case `/usr/bin/file conftest.$ac_objext` in
emboss-6.6.0+dfsg/m4/libtool.m4-1272- *ELF-32*)
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-1286- if test "$lt_cv_prog_gnu_ld" = yes; then
emboss-6.6.0+dfsg/m4/libtool.m4:1287: case `/usr/bin/file conftest.$ac_objext` in
emboss-6.6.0+dfsg/m4/libtool.m4-1288- *32-bit*)
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-1298- else
emboss-6.6.0+dfsg/m4/libtool.m4:1299: case `/usr/bin/file conftest.$ac_objext` in
emboss-6.6.0+dfsg/m4/libtool.m4-1300- *32-bit*)
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-1650- # And add a safety zone
emboss-6.6.0+dfsg/m4/libtool.m4:1651: lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \/ 4`
emboss-6.6.0+dfsg/m4/libtool.m4:1652: lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \* 3`
emboss-6.6.0+dfsg/m4/libtool.m4-1653- ;;
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-1683- if test -n "$kargmax"; then
emboss-6.6.0+dfsg/m4/libtool.m4:1684: lt_cv_sys_max_cmd_len=`echo $kargmax | sed 's/.*[[ ]]//'`
emboss-6.6.0+dfsg/m4/libtool.m4-1685- else
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-1691- if test -n "$lt_cv_sys_max_cmd_len"; then
emboss-6.6.0+dfsg/m4/libtool.m4:1692: lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \/ 4`
emboss-6.6.0+dfsg/m4/libtool.m4:1693: lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \* 3`
emboss-6.6.0+dfsg/m4/libtool.m4-1694- else
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-1703- # we can't tell.
emboss-6.6.0+dfsg/m4/libtool.m4:1704: while { test "X"`env echo "$teststring$teststring" 2>/dev/null` \
emboss-6.6.0+dfsg/m4/libtool.m4-1705- = "X$teststring$teststring"; } >/dev/null 2>&1 &&
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-1707- do
emboss-6.6.0+dfsg/m4/libtool.m4:1708: i=`expr $i + 1`
emboss-6.6.0+dfsg/m4/libtool.m4-1709- teststring=$teststring$teststring
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-1711- # Only check the string length outside the loop.
emboss-6.6.0+dfsg/m4/libtool.m4:1712: lt_cv_sys_max_cmd_len=`expr "X$teststring" : ".*" 2>&1`
emboss-6.6.0+dfsg/m4/libtool.m4-1713- teststring=
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-1716- # linker. It appears as though 1/2 is a usable value.
emboss-6.6.0+dfsg/m4/libtool.m4:1717: lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \/ 2`
emboss-6.6.0+dfsg/m4/libtool.m4-1718- fi
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-2041- if test "$hard_links" = no; then
emboss-6.6.0+dfsg/m4/libtool.m4:2042: AC_MSG_WARN([`$CC' does not support `-c -o', so `make -j' may be unsafe])
emboss-6.6.0+dfsg/m4/libtool.m4-2043- need_locks=warn
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-2172- esac
emboss-6.6.0+dfsg/m4/libtool.m4:2173: lt_search_path_spec=`$CC -print-search-dirs | awk $lt_awk_arg | $SED -e "s/^libraries://" -e $lt_sed_strip_eq`
emboss-6.6.0+dfsg/m4/libtool.m4-2174- case $lt_search_path_spec in
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-2179- # okay in the real world where ";" in dirpaths is itself problematic.
emboss-6.6.0+dfsg/m4/libtool.m4:2180: lt_search_path_spec=`$ECHO "$lt_search_path_spec" | $SED 's/;/ /g'`
emboss-6.6.0+dfsg/m4/libtool.m4-2181- ;;
emboss-6.6.0+dfsg/m4/libtool.m4-2182- *)
emboss-6.6.0+dfsg/m4/libtool.m4:2183: lt_search_path_spec=`$ECHO "$lt_search_path_spec" | $SED "s/$PATH_SEPARATOR/ /g"`
emboss-6.6.0+dfsg/m4/libtool.m4-2184- ;;
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-2188- lt_tmp_lt_search_path_spec=
emboss-6.6.0+dfsg/m4/libtool.m4:2189: lt_multi_os_dir=`$CC $CPPFLAGS $CFLAGS $LDFLAGS -print-multi-os-directory 2>/dev/null`
emboss-6.6.0+dfsg/m4/libtool.m4-2190- for lt_sys_path in $lt_search_path_spec; do
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-2223- esac
emboss-6.6.0+dfsg/m4/libtool.m4:2224: sys_lib_search_path_spec=`$ECHO "$lt_search_path_spec" | $lt_NL2SP`
emboss-6.6.0+dfsg/m4/libtool.m4-2225-else
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-2311- # Create ${libname}_ixlibrary.a entries in /sys/libs.
emboss-6.6.0+dfsg/m4/libtool.m4:2312: finish_eval='for lib in `ls $libdir/*.ixlibrary 2>/dev/null`; do libname=`func_echo_all "$lib" | $SED '\''s%^.*/\([[^/]]*\)\.ixlibrary$%\1%'\''`; test $RM /sys/libs/${libname}_ixlibrary.a; $show "cd /sys/libs && $LN_S $lib ${libname}_ixlibrary.a"; cd /sys/libs && $LN_S $lib ${libname}_ixlibrary.a || exit 1; done'
emboss-6.6.0+dfsg/m4/libtool.m4-2313- ;;
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-2347- # DLL is installed to $(libdir)/../bin by postinstall_cmds
emboss-6.6.0+dfsg/m4/libtool.m4:2348: postinstall_cmds='base_file=`basename \${file}`~
emboss-6.6.0+dfsg/m4/libtool.m4:2349: dlpath=`$SHELL 2>&1 -c '\''. $dir/'\''\${base_file}'\''i; echo \$dlname'\''`~
emboss-6.6.0+dfsg/m4/libtool.m4:2350: dldir=$destdir/`dirname \$dlpath`~
emboss-6.6.0+dfsg/m4/libtool.m4-2351- test -d \$dldir || mkdir -p \$dldir~
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-2356- fi'
emboss-6.6.0+dfsg/m4/libtool.m4:2357: postuninstall_cmds='dldll=`$SHELL 2>&1 -c '\''. $file; echo \$dlname'\''`~
emboss-6.6.0+dfsg/m4/libtool.m4-2358- dlpath=$dir/\$dldll~
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-2364- # Cygwin DLLs use 'cyg' prefix rather than 'lib'
emboss-6.6.0+dfsg/m4/libtool.m4:2365: soname_spec='`echo ${libname} | sed -e 's/^lib/cyg/'``echo ${release} | $SED -e 's/[[.]]/-/g'`${versuffix}${shared_ext}'
emboss-6.6.0+dfsg/m4/libtool.m4-2366-m4_if([$1], [],[
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-2370- # MinGW DLLs use traditional 'lib' prefix
emboss-6.6.0+dfsg/m4/libtool.m4:2371: soname_spec='${libname}`echo ${release} | $SED -e 's/[[.]]/-/g'`${versuffix}${shared_ext}'
emboss-6.6.0+dfsg/m4/libtool.m4-2372- ;;
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-2374- # pw32 DLLs use 'pw' prefix rather than 'lib'
emboss-6.6.0+dfsg/m4/libtool.m4:2375: library_names_spec='`echo ${libname} | sed -e 's/^lib/pw/'``echo ${release} | $SED -e 's/[[.]]/-/g'`${versuffix}${shared_ext}'
emboss-6.6.0+dfsg/m4/libtool.m4-2376- ;;
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-2383- libname_spec='$name'
emboss-6.6.0+dfsg/m4/libtool.m4:2384: soname_spec='${libname}`echo ${release} | $SED -e 's/[[.]]/-/g'`${versuffix}${shared_ext}'
emboss-6.6.0+dfsg/m4/libtool.m4-2385- library_names_spec='${libname}.dll.lib'
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-2395- # Let DOS variable expansion print the short 8.3 style file name.
emboss-6.6.0+dfsg/m4/libtool.m4:2396: lt_path=`cd "$lt_path" 2>/dev/null && cmd //C "for %i in (".") do @echo %~si"`
emboss-6.6.0+dfsg/m4/libtool.m4-2397- sys_lib_search_path_spec="$sys_lib_search_path_spec $lt_path"
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-2400- # Convert to MSYS style.
emboss-6.6.0+dfsg/m4/libtool.m4:2401: sys_lib_search_path_spec=`$ECHO "$sys_lib_search_path_spec" | sed -e 's|\\\\|/|g' -e 's| \\([[a-zA-Z]]\\):| /\\1|g' -e 's|^ ||'`
emboss-6.6.0+dfsg/m4/libtool.m4-2402- ;;
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-2406- # like /cygdrive/c/PROGRA~1:/cygdr...
emboss-6.6.0+dfsg/m4/libtool.m4:2407: sys_lib_search_path_spec=`cygpath --path --unix "$LIB"`
emboss-6.6.0+dfsg/m4/libtool.m4:2408: sys_lib_search_path_spec=`cygpath --path --dos "$sys_lib_search_path_spec" 2>/dev/null`
emboss-6.6.0+dfsg/m4/libtool.m4:2409: sys_lib_search_path_spec=`cygpath --path --unix "$sys_lib_search_path_spec" | $SED -e "s/$PATH_SEPARATOR/ /g"`
emboss-6.6.0+dfsg/m4/libtool.m4-2410- ;;
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-2414- # It is most probably a Windows format PATH.
emboss-6.6.0+dfsg/m4/libtool.m4:2415: sys_lib_search_path_spec=`$ECHO "$sys_lib_search_path_spec" | $SED -e 's/;/ /g'`
emboss-6.6.0+dfsg/m4/libtool.m4-2416- else
emboss-6.6.0+dfsg/m4/libtool.m4:2417: sys_lib_search_path_spec=`$ECHO "$sys_lib_search_path_spec" | $SED -e "s/$PATH_SEPARATOR/ /g"`
emboss-6.6.0+dfsg/m4/libtool.m4-2418- fi
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-2424- # DLL is installed to $(libdir)/../bin by postinstall_cmds
emboss-6.6.0+dfsg/m4/libtool.m4:2425: postinstall_cmds='base_file=`basename \${file}`~
emboss-6.6.0+dfsg/m4/libtool.m4:2426: dlpath=`$SHELL 2>&1 -c '\''. $dir/'\''\${base_file}'\''i; echo \$dlname'\''`~
emboss-6.6.0+dfsg/m4/libtool.m4:2427: dldir=$destdir/`dirname \$dlpath`~
emboss-6.6.0+dfsg/m4/libtool.m4-2428- test -d \$dldir || mkdir -p \$dldir~
emboss-6.6.0+dfsg/m4/libtool.m4-2429- $install_prog $dir/$dlname \$dldir/$dlname'
emboss-6.6.0+dfsg/m4/libtool.m4:2430: postuninstall_cmds='dldll=`$SHELL 2>&1 -c '\''. $file; echo \$dlname'\''`~
emboss-6.6.0+dfsg/m4/libtool.m4-2431- dlpath=$dir/\$dldll~
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-2438- # Assume MSVC wrapper
emboss-6.6.0+dfsg/m4/libtool.m4:2439: library_names_spec='${libname}`echo ${release} | $SED -e 's/[[.]]/-/g'`${versuffix}${shared_ext} $libname.lib'
emboss-6.6.0+dfsg/m4/libtool.m4-2440- dynamic_linker='Win32 ld.exe'
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-2455- shlibpath_var=DYLD_LIBRARY_PATH
emboss-6.6.0+dfsg/m4/libtool.m4:2456: shrext_cmds='`test .$module = .yes && echo .so || echo .dylib`'
emboss-6.6.0+dfsg/m4/libtool.m4-2457-m4_if([$1], [],[
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-2676- if test -f /etc/ld.so.conf; then
emboss-6.6.0+dfsg/m4/libtool.m4:2677: lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \[$]2)); skip = 1; } { if (!skip) print \[$]0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;/^[ ]*hwcap[ ]/d;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;s/"//g;/^$/d' | tr '\n' ' '`
emboss-6.6.0+dfsg/m4/libtool.m4-2678- sys_lib_dlsearch_path_spec="$sys_lib_dlsearch_path_spec $lt_ld_extra"
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-2739- shlibpath_var=LD_LIBRARY_PATH
emboss-6.6.0+dfsg/m4/libtool.m4:2740: if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then
emboss-6.6.0+dfsg/m4/libtool.m4-2741- case $host_os in
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-2956- "file_magic "*)
emboss-6.6.0+dfsg/m4/libtool.m4:2957: file_magic_regex=`expr "$deplibs_check_method" : "file_magic \(.*\)"`
emboss-6.6.0+dfsg/m4/libtool.m4-2958- MAGIC_CMD="$lt_cv_path_MAGIC_CMD"
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-3039- # gcc leaves a trailing carriage return which upsets mingw
emboss-6.6.0+dfsg/m4/libtool.m4:3040: ac_prog=`($CC -print-prog-name=ld) 2>&5 | tr -d '\015'` ;;
emboss-6.6.0+dfsg/m4/libtool.m4-3041- *)
emboss-6.6.0+dfsg/m4/libtool.m4:3042: ac_prog=`($CC -print-prog-name=ld) 2>&5` ;;
emboss-6.6.0+dfsg/m4/libtool.m4-3043- esac
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-3048- # Canonicalize the pathname of ld
emboss-6.6.0+dfsg/m4/libtool.m4:3049: ac_prog=`$ECHO "$ac_prog"| $SED 's%\\\\%/%g'`
emboss-6.6.0+dfsg/m4/libtool.m4-3050- while $ECHO "$ac_prog" | $GREP "$re_direlt" > /dev/null 2>&1; do
emboss-6.6.0+dfsg/m4/libtool.m4:3051: ac_prog=`$ECHO $ac_prog| $SED "s%$re_direlt%/%"`
emboss-6.6.0+dfsg/m4/libtool.m4-3052- done
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-3079- # Break only if it was the GNU/non-GNU ld that we prefer.
emboss-6.6.0+dfsg/m4/libtool.m4:3080: case `"$lt_cv_path_LD" -v 2>&1 </dev/null` in
emboss-6.6.0+dfsg/m4/libtool.m4-3081- *GNU* | *'with BFD'*)
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-3119-[# I'd rather use --version here, but apparently some GNU lds only accept -v.
emboss-6.6.0+dfsg/m4/libtool.m4:3120:case `$LD -v 2>&1 </dev/null` in
emboss-6.6.0+dfsg/m4/libtool.m4-3121-*GNU* | *'with BFD'*)
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-3314-openbsd*)
emboss-6.6.0+dfsg/m4/libtool.m4:3315: if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then
emboss-6.6.0+dfsg/m4/libtool.m4-3316- lt_cv_deplibs_check_method='match_pattern /lib[[^/]]+(\.so\.[[0-9]]+\.[[0-9]]+|\.so|_pic\.a)$'
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-3378- else
emboss-6.6.0+dfsg/m4/libtool.m4:3379: file_magic_glob=`echo aAbBcCdDeEfFgGhHiIjJkKlLmMnNoOpPqQrRsStTuUvVwWxXyYzZ | $SED -e "s/\(..\)/s\/[[\1]]\/[[\1]]\/g;/g"`
emboss-6.6.0+dfsg/m4/libtool.m4-3380- fi
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-3424- # Tru64's nm complains that /dev/null is an invalid object file
emboss-6.6.0+dfsg/m4/libtool.m4:3425: case `"$tmp_nm" -B /dev/null 2>&1 | sed '1q'` in
emboss-6.6.0+dfsg/m4/libtool.m4-3426- */dev/null* | *'Invalid file or object type'*)
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-3430- *)
emboss-6.6.0+dfsg/m4/libtool.m4:3431: case `"$tmp_nm" -p /dev/null 2>&1 | sed '1q'` in
emboss-6.6.0+dfsg/m4/libtool.m4-3432- */dev/null*)
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-3456- AC_CHECK_TOOLS(DUMPBIN, [dumpbin "link -dump"], :)
emboss-6.6.0+dfsg/m4/libtool.m4:3457: case `$DUMPBIN -symbols /dev/null 2>&1 | sed '1q'` in
emboss-6.6.0+dfsg/m4/libtool.m4-3458- *COFF*)
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-3515- # decide which to use based on capabilities of $DLLTOOL
emboss-6.6.0+dfsg/m4/libtool.m4:3516: case `$DLLTOOL --help 2>&1` in
emboss-6.6.0+dfsg/m4/libtool.m4-3517- *--identify-strict*)
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-3674-# If we're using GNU nm, then use its standard symbol codes.
emboss-6.6.0+dfsg/m4/libtool.m4:3675:case `$NM -V 2>&1` in
emboss-6.6.0+dfsg/m4/libtool.m4-3676-*GNU* | *'with BFD'*)
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-3692-mingw*)
emboss-6.6.0+dfsg/m4/libtool.m4:3693: opt_cr=`$ECHO 'x\{0,1\}' | tr x '\015'` # option cr in regexp
emboss-6.6.0+dfsg/m4/libtool.m4-3694- ;;
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-3745- nlist=conftest.nm
emboss-6.6.0+dfsg/m4/libtool.m4:3746: if AC_TRY_EVAL(NM conftest.$ac_objext \| "$lt_cv_sys_global_symbol_pipe" \> $nlist) && test -s "$nlist"; then
emboss-6.6.0+dfsg/m4/libtool.m4-3747- # Try sorting and uniquifying the output.
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-4083- *)
emboss-6.6.0+dfsg/m4/libtool.m4:4084: case `$CC -V 2>&1 | sed 5q` in
emboss-6.6.0+dfsg/m4/libtool.m4-4085- *Sun\ C*)
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-4388- *)
emboss-6.6.0+dfsg/m4/libtool.m4:4389: case `$CC -V 2>&1 | sed 5q` in
emboss-6.6.0+dfsg/m4/libtool.m4-4390- *Sun\ Ceres\ Fortran* | *Sun*Fortran*\ [[1-7]].* | *Sun*Fortran*\ 8.[[0-3]]*)
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-4660- # shared libraries, regardless of the interface used.
emboss-6.6.0+dfsg/m4/libtool.m4:4661: case `$LD -v 2>&1` in
emboss-6.6.0+dfsg/m4/libtool.m4-4662- *\ \(GNU\ Binutils\)\ 2.19.5*) ;;
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-4692- supports_anon_versioning=no
emboss-6.6.0+dfsg/m4/libtool.m4:4693: case `$LD -v 2>&1` in
emboss-6.6.0+dfsg/m4/libtool.m4-4694- *GNU\ gold*) supports_anon_versioning=yes ;;
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-4761- # is EXPORTS), use it as is; otherwise, prepend...
emboss-6.6.0+dfsg/m4/libtool.m4:4762: _LT_TAGVAR(archive_expsym_cmds, $1)='if test "x`$SED 1q $export_symbols`" = xEXPORTS; then
emboss-6.6.0+dfsg/m4/libtool.m4-4763- cp $export_symbols $output_objdir/$soname.def;
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-4789- # time. Moving up from 0x10000000 also allows more sbrk(2) space.
emboss-6.6.0+dfsg/m4/libtool.m4:4790: _LT_TAGVAR(archive_cmds, $1)='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib'
emboss-6.6.0+dfsg/m4/libtool.m4:4791: _LT_TAGVAR(archive_expsym_cmds, $1)='sed "s,^,_," $export_symbols >$output_objdir/$soname.expsym~$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--retain-symbols-file,$output_objdir/$soname.expsym ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib'
emboss-6.6.0+dfsg/m4/libtool.m4-4792- ;;
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-4807- pgcc*) # Portland Group C compiler
emboss-6.6.0+dfsg/m4/libtool.m4:4808: _LT_TAGVAR(whole_archive_flag_spec, $1)='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; func_echo_all \"$new_convenience\"` ${wl}--no-whole-archive'
emboss-6.6.0+dfsg/m4/libtool.m4-4809- tmp_addflag=' $pic_flag'
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-4812- # Portland Group f77 and f90 compilers
emboss-6.6.0+dfsg/m4/libtool.m4:4813: _LT_TAGVAR(whole_archive_flag_spec, $1)='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; func_echo_all \"$new_convenience\"` ${wl}--no-whole-archive'
emboss-6.6.0+dfsg/m4/libtool.m4-4814- tmp_addflag=' $pic_flag -Mnomain' ;;
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-4827- nvcc*) # Cuda Compiler Driver 2.2
emboss-6.6.0+dfsg/m4/libtool.m4:4828: _LT_TAGVAR(whole_archive_flag_spec, $1)='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; func_echo_all \"$new_convenience\"` ${wl}--no-whole-archive'
emboss-6.6.0+dfsg/m4/libtool.m4-4829- _LT_TAGVAR(compiler_needs_object, $1)=yes
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-4831- esac
emboss-6.6.0+dfsg/m4/libtool.m4:4832: case `$CC -V 2>&1 | sed 5q` in
emboss-6.6.0+dfsg/m4/libtool.m4-4833- *Sun\ C*) # Sun C 5.9
emboss-6.6.0+dfsg/m4/libtool.m4:4834: _LT_TAGVAR(whole_archive_flag_spec, $1)='${wl}--whole-archive`new_convenience=; for conv in $convenience\"\"; do test -z \"$conv\" || new_convenience=\"$new_convenience,$conv\"; done; func_echo_all \"$new_convenience\"` ${wl}--no-whole-archive'
emboss-6.6.0+dfsg/m4/libtool.m4-4835- _LT_TAGVAR(compiler_needs_object, $1)=yes
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-4899- sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX*)
emboss-6.6.0+dfsg/m4/libtool.m4:4900: case `$LD -v 2>&1` in
emboss-6.6.0+dfsg/m4/libtool.m4-4901- *\ [[01]].* | *\ 2.[[0-9]].* | *\ 2.1[[0-5]].*)
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-5022- # below for broken collect2 doesn't work under 4.3+
emboss-6.6.0+dfsg/m4/libtool.m4:5023: collect2name=`${CC} -print-prog-name=collect2`
emboss-6.6.0+dfsg/m4/libtool.m4-5024- if test -f "$collect2name" &&
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-5071- _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-blibpath:$libdir:'"$aix_libpath"
emboss-6.6.0+dfsg/m4/libtool.m4:5072: _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags `if test "x${allow_undefined_flag}" != "x"; then func_echo_all "${wl}${allow_undefined_flag}"; else :; fi` '"\${wl}$exp_sym_flag:\$export_symbols $shared_flag"
emboss-6.6.0+dfsg/m4/libtool.m4-5073- else
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-5137- _LT_TAGVAR(archive_cmds, $1)='$CC -o $output_objdir/$soname $libobjs $compiler_flags $deplibs -Wl,-dll~linknames='
emboss-6.6.0+dfsg/m4/libtool.m4:5138: _LT_TAGVAR(archive_expsym_cmds, $1)='if test "x`$SED 1q $export_symbols`" = xEXPORTS; then
emboss-6.6.0+dfsg/m4/libtool.m4-5139- sed -n -e 's/\\\\\\\(.*\\\\\\\)/-link\\\ -EXPORT:\\\\\\\1/' -e '1\\\!p' < $export_symbols > $output_objdir/$soname.exp;
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-5174- # FIXME: Setting linknames here is a bad hack.
emboss-6.6.0+dfsg/m4/libtool.m4:5175: _LT_TAGVAR(archive_cmds, $1)='$CC -o $lib $libobjs $compiler_flags `func_echo_all "$deplibs" | $SED '\''s/ -lc$//'\''` -link -dll~linknames='
emboss-6.6.0+dfsg/m4/libtool.m4-5176- # The linker will automatically build a .lib file if we build a DLL.
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-5312- if test "$GCC" = yes; then
emboss-6.6.0+dfsg/m4/libtool.m4:5313: _LT_TAGVAR(archive_cmds, $1)='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && func_echo_all "${wl}-set_version ${wl}$verstring"` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
emboss-6.6.0+dfsg/m4/libtool.m4-5314- # Try to use the -exported_symbol ld option, if it does not
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-5335- if test "$lt_cv_irix_exported_symbol" = yes; then
emboss-6.6.0+dfsg/m4/libtool.m4:5336: _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && func_echo_all "${wl}-set_version ${wl}$verstring"` ${wl}-update_registry ${wl}${output_objdir}/so_locations ${wl}-exports_file ${wl}$export_symbols -o $lib'
emboss-6.6.0+dfsg/m4/libtool.m4-5337- fi
emboss-6.6.0+dfsg/m4/libtool.m4-5338- else
emboss-6.6.0+dfsg/m4/libtool.m4:5339: _LT_TAGVAR(archive_cmds, $1)='$CC -shared $libobjs $deplibs $compiler_flags -soname $soname `test -n "$verstring" && func_echo_all "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib'
emboss-6.6.0+dfsg/m4/libtool.m4:5340: _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared $libobjs $deplibs $compiler_flags -soname $soname `test -n "$verstring" && func_echo_all "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -exports_file $export_symbols -o $lib'
emboss-6.6.0+dfsg/m4/libtool.m4-5341- fi
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-5375- _LT_TAGVAR(hardcode_direct_absolute, $1)=yes
emboss-6.6.0+dfsg/m4/libtool.m4:5376: if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then
emboss-6.6.0+dfsg/m4/libtool.m4-5377- _LT_TAGVAR(archive_cmds, $1)='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags'
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-5408- _LT_TAGVAR(allow_undefined_flag, $1)=' ${wl}-expect_unresolved ${wl}\*'
emboss-6.6.0+dfsg/m4/libtool.m4:5409: _LT_TAGVAR(archive_cmds, $1)='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && func_echo_all "${wl}-set_version ${wl}$verstring"` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
emboss-6.6.0+dfsg/m4/libtool.m4-5410- else
emboss-6.6.0+dfsg/m4/libtool.m4-5411- _LT_TAGVAR(allow_undefined_flag, $1)=' -expect_unresolved \*'
emboss-6.6.0+dfsg/m4/libtool.m4:5412: _LT_TAGVAR(archive_cmds, $1)='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags -soname $soname `test -n "$verstring" && func_echo_all "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib'
emboss-6.6.0+dfsg/m4/libtool.m4-5413- fi
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-5421- _LT_TAGVAR(allow_undefined_flag, $1)=' ${wl}-expect_unresolved ${wl}\*'
emboss-6.6.0+dfsg/m4/libtool.m4:5422: _LT_TAGVAR(archive_cmds, $1)='$CC -shared${allow_undefined_flag} $pic_flag $libobjs $deplibs $compiler_flags ${wl}-msym ${wl}-soname ${wl}$soname `test -n "$verstring" && func_echo_all "${wl}-set_version ${wl}$verstring"` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
emboss-6.6.0+dfsg/m4/libtool.m4-5423- _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath ${wl}$libdir'
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-5425- _LT_TAGVAR(allow_undefined_flag, $1)=' -expect_unresolved \*'
emboss-6.6.0+dfsg/m4/libtool.m4:5426: _LT_TAGVAR(archive_cmds, $1)='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags -msym -soname $soname `test -n "$verstring" && func_echo_all "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib'
emboss-6.6.0+dfsg/m4/libtool.m4:5427: _LT_TAGVAR(archive_expsym_cmds, $1)='for i in `cat $export_symbols`; do printf "%s %s\\n" -exported_symbol "\$i" >> $lib.exp; done; printf "%s\\n" "-hidden">> $lib.exp~
emboss-6.6.0+dfsg/m4/libtool.m4:5428: $CC -shared${allow_undefined_flag} ${wl}-input ${wl}$lib.exp $compiler_flags $libobjs $deplibs -soname $soname `test -n "$verstring" && $ECHO "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib~$RM $lib.exp'
emboss-6.6.0+dfsg/m4/libtool.m4-5429-
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-5444- else
emboss-6.6.0+dfsg/m4/libtool.m4:5445: case `$CC -V 2>&1` in
emboss-6.6.0+dfsg/m4/libtool.m4-5446- *"Compilers 5.0"*)
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-5637- _LT_TAGVAR(allow_undefined_flag, $1)=
emboss-6.6.0+dfsg/m4/libtool.m4:5638: if AC_TRY_EVAL(_LT_TAGVAR(archive_cmds, $1) 2\>\&1 \| $GREP \" -lc \" \>/dev/null 2\>\&1)
emboss-6.6.0+dfsg/m4/libtool.m4-5639- then
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-5937- # ancient GNU ld didn't support --whole-archive et. al.
emboss-6.6.0+dfsg/m4/libtool.m4:5938: if eval "`$CC -print-prog-name=ld` --help 2>&1" |
emboss-6.6.0+dfsg/m4/libtool.m4-5939- $GREP 'no-whole-archive' > /dev/null; then
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6020- # below for broken collect2 doesn't work under 4.3+
emboss-6.6.0+dfsg/m4/libtool.m4:6021: collect2name=`${CC} -print-prog-name=collect2`
emboss-6.6.0+dfsg/m4/libtool.m4-6022- if test -f "$collect2name" &&
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6070-
emboss-6.6.0+dfsg/m4/libtool.m4:6071: _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags `if test "x${allow_undefined_flag}" != "x"; then func_echo_all "${wl}${allow_undefined_flag}"; else :; fi` '"\${wl}$exp_sym_flag:\$export_symbols $shared_flag"
emboss-6.6.0+dfsg/m4/libtool.m4-6072- else
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6136- _LT_TAGVAR(archive_cmds, $1)='$CC -o $output_objdir/$soname $libobjs $compiler_flags $deplibs -Wl,-dll~linknames='
emboss-6.6.0+dfsg/m4/libtool.m4:6137: _LT_TAGVAR(archive_expsym_cmds, $1)='if test "x`$SED 1q $export_symbols`" = xEXPORTS; then
emboss-6.6.0+dfsg/m4/libtool.m4-6138- $SED -n -e 's/\\\\\\\(.*\\\\\\\)/-link\\\ -EXPORT:\\\\\\\1/' -e '1\\\!p' < $export_symbols > $output_objdir/$soname.exp;
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6177- # is EXPORTS), use it as is; otherwise, prepend...
emboss-6.6.0+dfsg/m4/libtool.m4:6178: _LT_TAGVAR(archive_expsym_cmds, $1)='if test "x`$SED 1q $export_symbols`" = xEXPORTS; then
emboss-6.6.0+dfsg/m4/libtool.m4-6179- cp $export_symbols $output_objdir/$soname.def;
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6260- # dependencies.
emboss-6.6.0+dfsg/m4/libtool.m4:6261: output_verbose_link_cmd='templist=`($CC -b $CFLAGS -v conftest.$objext 2>&1) | $EGREP "\-L"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; func_echo_all "$list"'
emboss-6.6.0+dfsg/m4/libtool.m4-6262- ;;
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6325- # dependencies.
emboss-6.6.0+dfsg/m4/libtool.m4:6326: output_verbose_link_cmd='templist=`($CC -b $CFLAGS -v conftest.$objext 2>&1) | $GREP "\-L"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; func_echo_all "$list"'
emboss-6.6.0+dfsg/m4/libtool.m4-6327- ;;
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6361- # time. Moving up from 0x10000000 also allows more sbrk(2) space.
emboss-6.6.0+dfsg/m4/libtool.m4:6362: _LT_TAGVAR(archive_cmds, $1)='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib'
emboss-6.6.0+dfsg/m4/libtool.m4:6363: _LT_TAGVAR(archive_expsym_cmds, $1)='sed "s,^,_," $export_symbols >$output_objdir/$soname.expsym~$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--retain-symbols-file,$output_objdir/$soname.expsym ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib'
emboss-6.6.0+dfsg/m4/libtool.m4-6364- ;;
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6368- # SGI C++
emboss-6.6.0+dfsg/m4/libtool.m4:6369: _LT_TAGVAR(archive_cmds, $1)='$CC -shared -all -multigot $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -soname $soname `test -n "$verstring" && func_echo_all "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib'
emboss-6.6.0+dfsg/m4/libtool.m4-6370-
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6379- if test "$with_gnu_ld" = no; then
emboss-6.6.0+dfsg/m4/libtool.m4:6380: _LT_TAGVAR(archive_cmds, $1)='$CC -shared $pic_flag -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && func_echo_all "${wl}-set_version ${wl}$verstring"` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
emboss-6.6.0+dfsg/m4/libtool.m4-6381- else
emboss-6.6.0+dfsg/m4/libtool.m4:6382: _LT_TAGVAR(archive_cmds, $1)='$CC -shared $pic_flag -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && func_echo_all "${wl}-set_version ${wl}$verstring"` -o $lib'
emboss-6.6.0+dfsg/m4/libtool.m4-6383- fi
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6400- # to its proper name (with version) after linking.
emboss-6.6.0+dfsg/m4/libtool.m4:6401: _LT_TAGVAR(archive_cmds, $1)='tempext=`echo $shared_ext | $SED -e '\''s/\([[^()0-9A-Za-z{}]]\)/\\\\\1/g'\''`; templib=`echo $lib | $SED -e "s/\${tempext}\..*/.so/"`; $CC $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags --soname $soname -o \$templib; mv \$templib $lib'
emboss-6.6.0+dfsg/m4/libtool.m4:6402: _LT_TAGVAR(archive_expsym_cmds, $1)='tempext=`echo $shared_ext | $SED -e '\''s/\([[^()0-9A-Za-z{}]]\)/\\\\\1/g'\''`; templib=`echo $lib | $SED -e "s/\${tempext}\..*/.so/"`; $CC $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags --soname $soname -o \$templib ${wl}-retain-symbols-file,$export_symbols; mv \$templib $lib'
emboss-6.6.0+dfsg/m4/libtool.m4-6403- # Commands to make compiler produce verbose output that lists
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6410- # dependencies.
emboss-6.6.0+dfsg/m4/libtool.m4:6411: output_verbose_link_cmd='templist=`$CC $CFLAGS -v conftest.$objext -o libconftest$shared_ext 2>&1 | $GREP "ld"`; rm -f libconftest$shared_ext; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; func_echo_all "$list"'
emboss-6.6.0+dfsg/m4/libtool.m4-6412-
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6425- # earlier do not add the objects themselves.
emboss-6.6.0+dfsg/m4/libtool.m4:6426: case `$CC -V 2>&1` in
emboss-6.6.0+dfsg/m4/libtool.m4-6427- *"Version 7."*)
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6446- # Portland Group C++ compiler
emboss-6.6.0+dfsg/m4/libtool.m4:6447: case `$CC -V` in
emboss-6.6.0+dfsg/m4/libtool.m4-6448- *pgCC\ [[1-5]].* | *pgcpp\ [[1-5]].*)
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6451- $CC --prelink_objects --instantiation_dir $tpldir $objs $libobjs $compile_deplibs~
emboss-6.6.0+dfsg/m4/libtool.m4:6452: compile_command="$compile_command `find $tpldir -name \*.o | sort | $NL2SP`"'
emboss-6.6.0+dfsg/m4/libtool.m4-6453- _LT_TAGVAR(old_archive_cmds, $1)='tpldir=Template.dir~
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6455- $CC --prelink_objects --instantiation_dir $tpldir $oldobjs$old_deplibs~
emboss-6.6.0+dfsg/m4/libtool.m4:6456: $AR $AR_FLAGS $oldlib$oldobjs$old_deplibs `find $tpldir -name \*.o | sort | $NL2SP`~
emboss-6.6.0+dfsg/m4/libtool.m4-6457- $RANLIB $oldlib'
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6460- $CC --prelink_objects --instantiation_dir $tpldir $predep_objects $libobjs $deplibs $convenience $postdep_objects~
emboss-6.6.0+dfsg/m4/libtool.m4:6461: $CC -shared $pic_flag $predep_objects $libobjs $deplibs `find $tpldir -name \*.o | sort | $NL2SP` $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname -o $lib'
emboss-6.6.0+dfsg/m4/libtool.m4-6462- _LT_TAGVAR(archive_expsym_cmds, $1)='tpldir=Template.dir~
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6464- $CC --prelink_objects --instantiation_dir $tpldir $predep_objects $libobjs $deplibs $convenience $postdep_objects~
emboss-6.6.0+dfsg/m4/libtool.m4:6465: $CC -shared $pic_flag $predep_objects $libobjs $deplibs `find $tpldir -name \*.o | sort | $NL2SP` $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname ${wl}-retain-symbols-file ${wl}$export_symbols -o $lib'
emboss-6.6.0+dfsg/m4/libtool.m4-6466- ;;
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6474- _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}--export-dynamic'
emboss-6.6.0+dfsg/m4/libtool.m4:6475: _LT_TAGVAR(whole_archive_flag_spec, $1)='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; func_echo_all \"$new_convenience\"` ${wl}--no-whole-archive'
emboss-6.6.0+dfsg/m4/libtool.m4-6476- ;;
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6493- # dependencies.
emboss-6.6.0+dfsg/m4/libtool.m4:6494: output_verbose_link_cmd='templist=`$CC -shared $CFLAGS -v conftest.$objext 2>&1 | $GREP "ld"`; templist=`func_echo_all "$templist" | $SED "s/\(^.*ld.*\)\( .*ld .*$\)/\1/"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; func_echo_all "X$list" | $Xsed'
emboss-6.6.0+dfsg/m4/libtool.m4-6495- ;;
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6508- *)
emboss-6.6.0+dfsg/m4/libtool.m4:6509: case `$CC -V 2>&1 | sed 5q` in
emboss-6.6.0+dfsg/m4/libtool.m4-6510- *Sun\ C*)
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6515- _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-R$libdir'
emboss-6.6.0+dfsg/m4/libtool.m4:6516: _LT_TAGVAR(whole_archive_flag_spec, $1)='${wl}--whole-archive`new_convenience=; for conv in $convenience\"\"; do test -z \"$conv\" || new_convenience=\"$new_convenience,$conv\"; done; func_echo_all \"$new_convenience\"` ${wl}--no-whole-archive'
emboss-6.6.0+dfsg/m4/libtool.m4-6517- _LT_TAGVAR(compiler_needs_object, $1)=yes
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6585- _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath,$libdir'
emboss-6.6.0+dfsg/m4/libtool.m4:6586: if test -z "`echo __ELF__ | $CC -E - | grep __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then
emboss-6.6.0+dfsg/m4/libtool.m4-6587- _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-retain-symbols-file,$export_symbols -o $lib'
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6604- # to its proper name (with version) after linking.
emboss-6.6.0+dfsg/m4/libtool.m4:6605: _LT_TAGVAR(archive_cmds, $1)='tempext=`echo $shared_ext | $SED -e '\''s/\([[^()0-9A-Za-z{}]]\)/\\\\\1/g'\''`; templib=`echo "$lib" | $SED -e "s/\${tempext}\..*/.so/"`; $CC $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags --soname $soname -o \$templib; mv \$templib $lib'
emboss-6.6.0+dfsg/m4/libtool.m4-6606-
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6625- _LT_TAGVAR(allow_undefined_flag, $1)=' ${wl}-expect_unresolved ${wl}\*'
emboss-6.6.0+dfsg/m4/libtool.m4:6626: _LT_TAGVAR(archive_cmds, $1)='$CC -shared${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $soname `test -n "$verstring" && func_echo_all "${wl}-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib'
emboss-6.6.0+dfsg/m4/libtool.m4-6627- _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath ${wl}$libdir'
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6630- _LT_TAGVAR(allow_undefined_flag, $1)=' -expect_unresolved \*'
emboss-6.6.0+dfsg/m4/libtool.m4:6631: _LT_TAGVAR(archive_cmds, $1)='$CC -shared${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -msym -soname $soname `test -n "$verstring" && func_echo_all "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib'
emboss-6.6.0+dfsg/m4/libtool.m4:6632: _LT_TAGVAR(archive_expsym_cmds, $1)='for i in `cat $export_symbols`; do printf "%s %s\\n" -exported_symbol "\$i" >> $lib.exp; done~
emboss-6.6.0+dfsg/m4/libtool.m4-6633- echo "-hidden">> $lib.exp~
emboss-6.6.0+dfsg/m4/libtool.m4:6634: $CC -shared$allow_undefined_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -msym -soname $soname ${wl}-input ${wl}$lib.exp `test -n "$verstring" && $ECHO "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib~
emboss-6.6.0+dfsg/m4/libtool.m4-6635- $RM $lib.exp'
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6649- # dependencies.
emboss-6.6.0+dfsg/m4/libtool.m4:6650: output_verbose_link_cmd='templist=`$CC -shared $CFLAGS -v conftest.$objext 2>&1 | $GREP "ld" | $GREP -v "ld:"`; templist=`func_echo_all "$templist" | $SED "s/\(^.*ld.*\)\( .*ld.*$\)/\1/"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; func_echo_all "$list"'
emboss-6.6.0+dfsg/m4/libtool.m4-6651- ;;
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6656- osf3*)
emboss-6.6.0+dfsg/m4/libtool.m4:6657: _LT_TAGVAR(archive_cmds, $1)='$CC -shared -nostdlib ${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && func_echo_all "${wl}-set_version ${wl}$verstring"` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
emboss-6.6.0+dfsg/m4/libtool.m4-6658- ;;
emboss-6.6.0+dfsg/m4/libtool.m4-6659- *)
emboss-6.6.0+dfsg/m4/libtool.m4:6660: _LT_TAGVAR(archive_cmds, $1)='$CC -shared $pic_flag -nostdlib ${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-msym ${wl}-soname ${wl}$soname `test -n "$verstring" && func_echo_all "${wl}-set_version ${wl}$verstring"` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
emboss-6.6.0+dfsg/m4/libtool.m4-6661- ;;
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6909- case ${2} in
emboss-6.6.0+dfsg/m4/libtool.m4:6910: .*) func_stripname_result=`$ECHO "${3}" | $SED "s%^${1}%%; s%\\\\${2}\$%%"`;;
emboss-6.6.0+dfsg/m4/libtool.m4:6911: *) func_stripname_result=`$ECHO "${3}" | $SED "s%^${1}%%; s%${2}\$%%"`;;
emboss-6.6.0+dfsg/m4/libtool.m4-6912- esac
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-6997-
emboss-6.6.0+dfsg/m4/libtool.m4:6998: for p in `eval "$output_verbose_link_cmd"`; do
emboss-6.6.0+dfsg/m4/libtool.m4-6999- case ${prev}${p} in
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-7095-linux*)
emboss-6.6.0+dfsg/m4/libtool.m4:7096: case `$CC -V 2>&1 | sed 5q` in
emboss-6.6.0+dfsg/m4/libtool.m4-7097- *Sun\ C*)
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-7146-if test -n "${_LT_TAGVAR(compiler_lib_search_path, $1)}"; then
emboss-6.6.0+dfsg/m4/libtool.m4:7147: _LT_TAGVAR(compiler_lib_search_dirs, $1)=`echo " ${_LT_TAGVAR(compiler_lib_search_path, $1)}" | ${SED} -e 's! -L! !g' -e 's!^ !!'`
emboss-6.6.0+dfsg/m4/libtool.m4-7148-fi
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-7758- test $lt_ac_count -gt 10 && break
emboss-6.6.0+dfsg/m4/libtool.m4:7759: lt_ac_count=`expr $lt_ac_count + 1`
emboss-6.6.0+dfsg/m4/libtool.m4-7760- if test $lt_ac_count -gt $lt_ac_max; then
##############################################
emboss-6.6.0+dfsg/m4/libtool.m4-7829-# ------------------------------------------------------
emboss-6.6.0+dfsg/m4/libtool.m4:7830:# In `$cfgfile', look for function FUNCNAME delimited by `^FUNCNAME ()$' and
emboss-6.6.0+dfsg/m4/libtool.m4-7831-# '^} FUNCNAME ', and replace its body with REPLACEMENT-BODY.
##############################################
emboss-6.6.0+dfsg/m4/postgresql.m4-89-
emboss-6.6.0+dfsg/m4/postgresql.m4:90: POSTGRESQL_CFLAGS="-I`${POSTGRESQL_CONFIG} --includedir`"
emboss-6.6.0+dfsg/m4/postgresql.m4:91: POSTGRESQL_CPPFLAGS="-I`${POSTGRESQL_CONFIG} --includedir`"
emboss-6.6.0+dfsg/m4/postgresql.m4:92: POSTGRESQL_LDFLAGS="-L`${POSTGRESQL_CONFIG} --libdir` -lpq"
emboss-6.6.0+dfsg/m4/postgresql.m4-93-
emboss-6.6.0+dfsg/m4/postgresql.m4:94: POSTGRESQL_VERSION=`${POSTGRESQL_CONFIG} --version | sed -e 's#PostgreSQL ##'`
emboss-6.6.0+dfsg/m4/postgresql.m4-95-
##############################################
emboss-6.6.0+dfsg/m4/postgresql.m4-147-
emboss-6.6.0+dfsg/m4/postgresql.m4:148: postgresql_version_req_major=`expr ${postgresql_version_req} : '\([[0-9]]*\)'`
emboss-6.6.0+dfsg/m4/postgresql.m4:149: postgresql_version_req_minor=`expr ${postgresql_version_req} : '[[0-9]]*\.\([[0-9]]*\)'`
emboss-6.6.0+dfsg/m4/postgresql.m4:150: postgresql_version_req_micro=`expr ${postgresql_version_req} : '[[0-9]]*\.[[0-9]]*\.\([[0-9]]*\)'`
emboss-6.6.0+dfsg/m4/postgresql.m4-151-
##############################################
emboss-6.6.0+dfsg/m4/postgresql.m4-161-
emboss-6.6.0+dfsg/m4/postgresql.m4:162: postgresql_version_major=`expr ${POSTGRESQL_VERSION} : '\([[0-9]]*\)'`
emboss-6.6.0+dfsg/m4/postgresql.m4:163: postgresql_version_minor=`expr ${POSTGRESQL_VERSION} : '[[0-9]]*\.\([[0-9]]*\)'`
emboss-6.6.0+dfsg/m4/postgresql.m4:164: postgresql_version_micro=`expr ${POSTGRESQL_VERSION} : '[[0-9]]*\.[[0-9]]*\.\([[0-9]]*\)'`
emboss-6.6.0+dfsg/m4/postgresql.m4-165-
##############################################
emboss-6.6.0+dfsg/m4/postgresql.m4-172-
emboss-6.6.0+dfsg/m4/postgresql.m4:173: postgresql_version_check=`expr ${postgresql_version_number} \>\= ${postgresql_version_req_number}`
emboss-6.6.0+dfsg/m4/postgresql.m4-174-
##############################################
emboss-6.6.0+dfsg/m4/mysql.m4-92-
emboss-6.6.0+dfsg/m4/mysql.m4:93: MYSQL_CFLAGS="`${MYSQL_CONFIG} --cflags`"
emboss-6.6.0+dfsg/m4/mysql.m4:94: MYSQL_CPPFLAGS="`${MYSQL_CONFIG} --include`"
emboss-6.6.0+dfsg/m4/mysql.m4:95: MYSQL_LDFLAGS="`${MYSQL_CONFIG} --libs`"
emboss-6.6.0+dfsg/m4/mysql.m4-96-
emboss-6.6.0+dfsg/m4/mysql.m4:97: MYSQL_VERSION=`${MYSQL_CONFIG} --version`
emboss-6.6.0+dfsg/m4/mysql.m4-98-
##############################################
emboss-6.6.0+dfsg/m4/mysql.m4-150-
emboss-6.6.0+dfsg/m4/mysql.m4:151: mysql_version_req_major=`expr ${mysql_version_req} : '\([[0-9]]*\)'`
emboss-6.6.0+dfsg/m4/mysql.m4:152: mysql_version_req_minor=`expr ${mysql_version_req} : '[[0-9]]*\.\([[0-9]]*\)'`
emboss-6.6.0+dfsg/m4/mysql.m4:153: mysql_version_req_micro=`expr ${mysql_version_req} : '[[0-9]]*\.[[0-9]]*\.\([[0-9]]*\)'`
emboss-6.6.0+dfsg/m4/mysql.m4-154-
##############################################
emboss-6.6.0+dfsg/m4/mysql.m4-164-
emboss-6.6.0+dfsg/m4/mysql.m4:165: mysql_version_major=`expr ${MYSQL_VERSION} : '\([[0-9]]*\)'`
emboss-6.6.0+dfsg/m4/mysql.m4:166: mysql_version_minor=`expr ${MYSQL_VERSION} : '[[0-9]]*\.\([[0-9]]*\)'`
emboss-6.6.0+dfsg/m4/mysql.m4:167: mysql_version_micro=`expr ${MYSQL_VERSION} : '[[0-9]]*\.[[0-9]]*\.\([[0-9]]*\)'`
emboss-6.6.0+dfsg/m4/mysql.m4-168-
##############################################
emboss-6.6.0+dfsg/m4/mysql.m4-175-
emboss-6.6.0+dfsg/m4/mysql.m4:176: mysql_version_check=`expr ${mysql_version_number} \>\= ${mysql_version_req_number}`
emboss-6.6.0+dfsg/m4/mysql.m4-177-
##############################################
emboss-6.6.0+dfsg/test/genbank/Makefile-76- esac
emboss-6.6.0+dfsg/test/genbank/Makefile:77:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/test/genbank/Makefile-78-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/test/genbank/Makefile:79: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/test/genbank/Makefile-80- *) f=$$p;; \
emboss-6.6.0+dfsg/test/genbank/Makefile-81- esac;
emboss-6.6.0+dfsg/test/genbank/Makefile:82:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/test/genbank/Makefile-83-am__install_max = 40
emboss-6.6.0+dfsg/test/genbank/Makefile-84-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/test/genbank/Makefile:85: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/test/genbank/Makefile-86-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/test/genbank/Makefile-333- @list='$(pkgdata_DATA)'; test -n "$(pkgdatadir)" || list=; \
emboss-6.6.0+dfsg/test/genbank/Makefile:334: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/test/genbank/Makefile-335- dir='$(DESTDIR)$(pkgdatadir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/test/genbank/Makefile-345-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/test/genbank/Makefile:346: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/genbank/Makefile:347: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/genbank/Makefile-348- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/test/genbank/Makefile-359- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/test/genbank/Makefile:360: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/test/genbank/Makefile-361- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/test/genbank/Makefile.in-76- esac
emboss-6.6.0+dfsg/test/genbank/Makefile.in:77:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/test/genbank/Makefile.in-78-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/test/genbank/Makefile.in:79: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/test/genbank/Makefile.in-80- *) f=$$p;; \
emboss-6.6.0+dfsg/test/genbank/Makefile.in-81- esac;
emboss-6.6.0+dfsg/test/genbank/Makefile.in:82:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/test/genbank/Makefile.in-83-am__install_max = 40
emboss-6.6.0+dfsg/test/genbank/Makefile.in-84-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/test/genbank/Makefile.in:85: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/test/genbank/Makefile.in-86-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/test/genbank/Makefile.in-333- @list='$(pkgdata_DATA)'; test -n "$(pkgdatadir)" || list=; \
emboss-6.6.0+dfsg/test/genbank/Makefile.in:334: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/test/genbank/Makefile.in-335- dir='$(DESTDIR)$(pkgdatadir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/test/genbank/Makefile.in-345-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/test/genbank/Makefile.in:346: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/genbank/Makefile.in:347: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/genbank/Makefile.in-348- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/test/genbank/Makefile.in-359- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/test/genbank/Makefile.in:360: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/test/genbank/Makefile.in-361- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/test/data/uniprotft.sw-1407-CC similarity).
emboss-6.6.0+dfsg/test/data/uniprotft.sw:1408:CC -!- SUBCELLULAR LOCATION: Cytoplasm (Probable).
emboss-6.6.0+dfsg/test/data/uniprotft.sw-1409-CC -!- MISCELLANEOUS: Some bacteria possess a monofunctional argJ, i.e.,
##############################################
emboss-6.6.0+dfsg/test/data/uniprotft.sw-1552-CC pathway; tetrahydrodipicolinate from L-aspartate: step 4/4.
emboss-6.6.0+dfsg/test/data/uniprotft.sw:1553:CC -!- SUBCELLULAR LOCATION: Cytoplasm (By similarity).
emboss-6.6.0+dfsg/test/data/uniprotft.sw-1554-CC -!- SIMILARITY: Belongs to the dihydrodipicolinate reductase family.
##############################################
emboss-6.6.0+dfsg/test/data/uniprotft.sw-2162-CC -!- DEVELOPMENTAL STAGE: It first appears on the chromosome loops and
emboss-6.6.0+dfsg/test/data/uniprotft.sw:2163:CC in the nucleoplasm of the germinal vesicle (GV). It is transmitted
emboss-6.6.0+dfsg/test/data/uniprotft.sw-2164-CC to the egg at GV breakdown and appears in embryonic nuclei at the
##############################################
emboss-6.6.0+dfsg/test/data/uniprotft.sw-3228-CC -!- SUBCELLULAR LOCATION: Nucleus. Centrosome. Note=Centrosomal during
emboss-6.6.0+dfsg/test/data/uniprotft.sw:3229:CC interphase, released into the cytoplasm at the onset of mitosis.
emboss-6.6.0+dfsg/test/data/uniprotft.sw-3230-CC Subsequently localizes to the midzone of the mitotic spindle.
##############################################
emboss-6.6.0+dfsg/test/data/Makefile-76- esac
emboss-6.6.0+dfsg/test/data/Makefile:77:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/test/data/Makefile-78-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/test/data/Makefile:79: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/test/data/Makefile-80- *) f=$$p;; \
emboss-6.6.0+dfsg/test/data/Makefile-81- esac;
emboss-6.6.0+dfsg/test/data/Makefile:82:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/test/data/Makefile-83-am__install_max = 40
emboss-6.6.0+dfsg/test/data/Makefile-84-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/test/data/Makefile:85: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/test/data/Makefile-86-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/test/data/Makefile-346- @list='$(pkgdata_DATA)'; test -n "$(pkgdatadir)" || list=; \
emboss-6.6.0+dfsg/test/data/Makefile:347: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/test/data/Makefile-348- dir='$(DESTDIR)$(pkgdatadir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/test/data/Makefile-358-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/test/data/Makefile:359: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/data/Makefile:360: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/data/Makefile-361- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/test/data/Makefile-372- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/test/data/Makefile:373: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/test/data/Makefile-374- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/test/data/Makefile.in-76- esac
emboss-6.6.0+dfsg/test/data/Makefile.in:77:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/test/data/Makefile.in-78-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/test/data/Makefile.in:79: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/test/data/Makefile.in-80- *) f=$$p;; \
emboss-6.6.0+dfsg/test/data/Makefile.in-81- esac;
emboss-6.6.0+dfsg/test/data/Makefile.in:82:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/test/data/Makefile.in-83-am__install_max = 40
emboss-6.6.0+dfsg/test/data/Makefile.in-84-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/test/data/Makefile.in:85: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/test/data/Makefile.in-86-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/test/data/Makefile.in-346- @list='$(pkgdata_DATA)'; test -n "$(pkgdatadir)" || list=; \
emboss-6.6.0+dfsg/test/data/Makefile.in:347: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/test/data/Makefile.in-348- dir='$(DESTDIR)$(pkgdatadir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/test/data/Makefile.in-358-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/test/data/Makefile.in:359: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/data/Makefile.in:360: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/data/Makefile.in-361- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/test/data/Makefile.in-372- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/test/data/Makefile.in:373: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/test/data/Makefile.in-374- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/test/swnew/Makefile-76- esac
emboss-6.6.0+dfsg/test/swnew/Makefile:77:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/test/swnew/Makefile-78-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/test/swnew/Makefile:79: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/test/swnew/Makefile-80- *) f=$$p;; \
emboss-6.6.0+dfsg/test/swnew/Makefile-81- esac;
emboss-6.6.0+dfsg/test/swnew/Makefile:82:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/test/swnew/Makefile-83-am__install_max = 40
emboss-6.6.0+dfsg/test/swnew/Makefile-84-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/test/swnew/Makefile:85: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/test/swnew/Makefile-86-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/test/swnew/Makefile-332- @list='$(pkgdata_DATA)'; test -n "$(pkgdatadir)" || list=; \
emboss-6.6.0+dfsg/test/swnew/Makefile:333: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/test/swnew/Makefile-334- dir='$(DESTDIR)$(pkgdatadir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/test/swnew/Makefile-344-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/test/swnew/Makefile:345: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/swnew/Makefile:346: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/swnew/Makefile-347- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/test/swnew/Makefile-358- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/test/swnew/Makefile:359: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/test/swnew/Makefile-360- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/test/swnew/Makefile.in-76- esac
emboss-6.6.0+dfsg/test/swnew/Makefile.in:77:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/test/swnew/Makefile.in-78-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/test/swnew/Makefile.in:79: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/test/swnew/Makefile.in-80- *) f=$$p;; \
emboss-6.6.0+dfsg/test/swnew/Makefile.in-81- esac;
emboss-6.6.0+dfsg/test/swnew/Makefile.in:82:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/test/swnew/Makefile.in-83-am__install_max = 40
emboss-6.6.0+dfsg/test/swnew/Makefile.in-84-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/test/swnew/Makefile.in:85: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/test/swnew/Makefile.in-86-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/test/swnew/Makefile.in-332- @list='$(pkgdata_DATA)'; test -n "$(pkgdatadir)" || list=; \
emboss-6.6.0+dfsg/test/swnew/Makefile.in:333: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/test/swnew/Makefile.in-334- dir='$(DESTDIR)$(pkgdatadir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/test/swnew/Makefile.in-344-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/test/swnew/Makefile.in:345: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/swnew/Makefile.in:346: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/swnew/Makefile.in-347- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/test/swnew/Makefile.in-358- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/test/swnew/Makefile.in:359: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/test/swnew/Makefile.in-360- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/test/Makefile-99- while test -n "$$dir1"; do \
emboss-6.6.0+dfsg/test/Makefile:100: first=`echo "$$dir1" | sed -e "$$sed_first"`; \
emboss-6.6.0+dfsg/test/Makefile-101- if test "$$first" != "."; then \
emboss-6.6.0+dfsg/test/Makefile-102- if test "$$first" = ".."; then \
emboss-6.6.0+dfsg/test/Makefile:103: dir2=`echo "$$dir0" | sed -e "$$sed_last"`/"$$dir2"; \
emboss-6.6.0+dfsg/test/Makefile:104: dir0=`echo "$$dir0" | sed -e "$$sed_butlast"`; \
emboss-6.6.0+dfsg/test/Makefile-105- else \
emboss-6.6.0+dfsg/test/Makefile:106: first2=`echo "$$dir2" | sed -e "$$sed_first"`; \
emboss-6.6.0+dfsg/test/Makefile-107- if test "$$first2" = "$$first"; then \
emboss-6.6.0+dfsg/test/Makefile:108: dir2=`echo "$$dir2" | sed -e "$$sed_rest"`; \
emboss-6.6.0+dfsg/test/Makefile-109- else \
##############################################
emboss-6.6.0+dfsg/test/Makefile-114- fi; \
emboss-6.6.0+dfsg/test/Makefile:115: dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \
emboss-6.6.0+dfsg/test/Makefile-116- done; \
##############################################
emboss-6.6.0+dfsg/test/Makefile-335- dot_seen=no; \
emboss-6.6.0+dfsg/test/Makefile:336: target=`echo $@ | sed s/-recursive//`; \
emboss-6.6.0+dfsg/test/Makefile-337- case "$@" in \
##############################################
emboss-6.6.0+dfsg/test/Makefile-425-GTAGS:
emboss-6.6.0+dfsg/test/Makefile:426: here=`$(am__cd) $(top_builddir) && pwd` \
emboss-6.6.0+dfsg/test/Makefile-427- && $(am__cd) $(top_srcdir) \
##############################################
emboss-6.6.0+dfsg/test/Makefile-447-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/test/Makefile:448: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/Makefile:449: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/Makefile-450- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/test/Makefile-461- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/test/Makefile:462: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/test/Makefile-463- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/test/testdb/Makefile-76- esac
emboss-6.6.0+dfsg/test/testdb/Makefile:77:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/test/testdb/Makefile-78-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/test/testdb/Makefile:79: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/test/testdb/Makefile-80- *) f=$$p;; \
emboss-6.6.0+dfsg/test/testdb/Makefile-81- esac;
emboss-6.6.0+dfsg/test/testdb/Makefile:82:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/test/testdb/Makefile-83-am__install_max = 40
emboss-6.6.0+dfsg/test/testdb/Makefile-84-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/test/testdb/Makefile:85: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/test/testdb/Makefile-86-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/test/testdb/Makefile-330- @list='$(pkgdata_DATA)'; test -n "$(pkgdatadir)" || list=; \
emboss-6.6.0+dfsg/test/testdb/Makefile:331: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/test/testdb/Makefile-332- dir='$(DESTDIR)$(pkgdatadir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/test/testdb/Makefile-342-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/test/testdb/Makefile:343: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/testdb/Makefile:344: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/testdb/Makefile-345- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/test/testdb/Makefile-356- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/test/testdb/Makefile:357: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/test/testdb/Makefile-358- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/test/testdb/Makefile.in-76- esac
emboss-6.6.0+dfsg/test/testdb/Makefile.in:77:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/test/testdb/Makefile.in-78-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/test/testdb/Makefile.in:79: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/test/testdb/Makefile.in-80- *) f=$$p;; \
emboss-6.6.0+dfsg/test/testdb/Makefile.in-81- esac;
emboss-6.6.0+dfsg/test/testdb/Makefile.in:82:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/test/testdb/Makefile.in-83-am__install_max = 40
emboss-6.6.0+dfsg/test/testdb/Makefile.in-84-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/test/testdb/Makefile.in:85: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/test/testdb/Makefile.in-86-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/test/testdb/Makefile.in-330- @list='$(pkgdata_DATA)'; test -n "$(pkgdatadir)" || list=; \
emboss-6.6.0+dfsg/test/testdb/Makefile.in:331: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/test/testdb/Makefile.in-332- dir='$(DESTDIR)$(pkgdatadir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/test/testdb/Makefile.in-342-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/test/testdb/Makefile.in:343: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/testdb/Makefile.in:344: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/testdb/Makefile.in-345- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/test/testdb/Makefile.in-356- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/test/testdb/Makefile.in:357: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/test/testdb/Makefile.in-358- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/test/pir/Makefile-76- esac
emboss-6.6.0+dfsg/test/pir/Makefile:77:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/test/pir/Makefile-78-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/test/pir/Makefile:79: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/test/pir/Makefile-80- *) f=$$p;; \
emboss-6.6.0+dfsg/test/pir/Makefile-81- esac;
emboss-6.6.0+dfsg/test/pir/Makefile:82:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/test/pir/Makefile-83-am__install_max = 40
emboss-6.6.0+dfsg/test/pir/Makefile-84-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/test/pir/Makefile:85: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/test/pir/Makefile-86-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/test/pir/Makefile-336- @list='$(pkgdata_DATA)'; test -n "$(pkgdatadir)" || list=; \
emboss-6.6.0+dfsg/test/pir/Makefile:337: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/test/pir/Makefile-338- dir='$(DESTDIR)$(pkgdatadir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/test/pir/Makefile-348-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/test/pir/Makefile:349: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/pir/Makefile:350: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/pir/Makefile-351- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/test/pir/Makefile-362- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/test/pir/Makefile:363: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/test/pir/Makefile-364- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/test/pir/Makefile.in-76- esac
emboss-6.6.0+dfsg/test/pir/Makefile.in:77:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/test/pir/Makefile.in-78-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/test/pir/Makefile.in:79: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/test/pir/Makefile.in-80- *) f=$$p;; \
emboss-6.6.0+dfsg/test/pir/Makefile.in-81- esac;
emboss-6.6.0+dfsg/test/pir/Makefile.in:82:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/test/pir/Makefile.in-83-am__install_max = 40
emboss-6.6.0+dfsg/test/pir/Makefile.in-84-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/test/pir/Makefile.in:85: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/test/pir/Makefile.in-86-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/test/pir/Makefile.in-336- @list='$(pkgdata_DATA)'; test -n "$(pkgdatadir)" || list=; \
emboss-6.6.0+dfsg/test/pir/Makefile.in:337: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/test/pir/Makefile.in-338- dir='$(DESTDIR)$(pkgdatadir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/test/pir/Makefile.in-348-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/test/pir/Makefile.in:349: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/pir/Makefile.in:350: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/pir/Makefile.in-351- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/test/pir/Makefile.in-362- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/test/pir/Makefile.in:363: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/test/pir/Makefile.in-364- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/test/embl/Makefile-76- esac
emboss-6.6.0+dfsg/test/embl/Makefile:77:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/test/embl/Makefile-78-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/test/embl/Makefile:79: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/test/embl/Makefile-80- *) f=$$p;; \
emboss-6.6.0+dfsg/test/embl/Makefile-81- esac;
emboss-6.6.0+dfsg/test/embl/Makefile:82:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/test/embl/Makefile-83-am__install_max = 40
emboss-6.6.0+dfsg/test/embl/Makefile-84-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/test/embl/Makefile:85: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/test/embl/Makefile-86-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/test/embl/Makefile-334- @list='$(pkgdata_DATA)'; test -n "$(pkgdatadir)" || list=; \
emboss-6.6.0+dfsg/test/embl/Makefile:335: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/test/embl/Makefile-336- dir='$(DESTDIR)$(pkgdatadir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/test/embl/Makefile-346-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/test/embl/Makefile:347: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/embl/Makefile:348: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/embl/Makefile-349- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/test/embl/Makefile-360- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/test/embl/Makefile:361: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/test/embl/Makefile-362- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/test/embl/Makefile.in-76- esac
emboss-6.6.0+dfsg/test/embl/Makefile.in:77:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/test/embl/Makefile.in-78-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/test/embl/Makefile.in:79: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/test/embl/Makefile.in-80- *) f=$$p;; \
emboss-6.6.0+dfsg/test/embl/Makefile.in-81- esac;
emboss-6.6.0+dfsg/test/embl/Makefile.in:82:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/test/embl/Makefile.in-83-am__install_max = 40
emboss-6.6.0+dfsg/test/embl/Makefile.in-84-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/test/embl/Makefile.in:85: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/test/embl/Makefile.in-86-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/test/embl/Makefile.in-334- @list='$(pkgdata_DATA)'; test -n "$(pkgdatadir)" || list=; \
emboss-6.6.0+dfsg/test/embl/Makefile.in:335: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/test/embl/Makefile.in-336- dir='$(DESTDIR)$(pkgdatadir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/test/embl/Makefile.in-346-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/test/embl/Makefile.in:347: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/embl/Makefile.in:348: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/embl/Makefile.in-349- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/test/embl/Makefile.in-360- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/test/embl/Makefile.in:361: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/test/embl/Makefile.in-362- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/test/swiss/seq.dat-12025-CC vesicle function.
emboss-6.6.0+dfsg/test/swiss/seq.dat:12026:CC -!- SUBCELLULAR LOCATION: Cytoplasm (By similarity). Nucleus (By
emboss-6.6.0+dfsg/test/swiss/seq.dat-12027-CC similarity).
##############################################
emboss-6.6.0+dfsg/test/swiss/seq.dat-18245-CC BBS/CCT complex (By similarity).
emboss-6.6.0+dfsg/test/swiss/seq.dat:18246:CC -!- SUBCELLULAR LOCATION: Cytoplasm (By similarity).
emboss-6.6.0+dfsg/test/swiss/seq.dat-18247-CC -!- SIMILARITY: Belongs to the TCP-1 chaperonin family.
##############################################
emboss-6.6.0+dfsg/test/swiss/Makefile-76- esac
emboss-6.6.0+dfsg/test/swiss/Makefile:77:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/test/swiss/Makefile-78-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/test/swiss/Makefile:79: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/test/swiss/Makefile-80- *) f=$$p;; \
emboss-6.6.0+dfsg/test/swiss/Makefile-81- esac;
emboss-6.6.0+dfsg/test/swiss/Makefile:82:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/test/swiss/Makefile-83-am__install_max = 40
emboss-6.6.0+dfsg/test/swiss/Makefile-84-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/test/swiss/Makefile:85: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/test/swiss/Makefile-86-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/test/swiss/Makefile-331- @list='$(pkgdata_DATA)'; test -n "$(pkgdatadir)" || list=; \
emboss-6.6.0+dfsg/test/swiss/Makefile:332: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/test/swiss/Makefile-333- dir='$(DESTDIR)$(pkgdatadir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/test/swiss/Makefile-343-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/test/swiss/Makefile:344: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/swiss/Makefile:345: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/swiss/Makefile-346- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/test/swiss/Makefile-357- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/test/swiss/Makefile:358: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/test/swiss/Makefile-359- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/test/swiss/Makefile.in-76- esac
emboss-6.6.0+dfsg/test/swiss/Makefile.in:77:am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
emboss-6.6.0+dfsg/test/swiss/Makefile.in-78-am__vpath_adj = case $$p in \
emboss-6.6.0+dfsg/test/swiss/Makefile.in:79: $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
emboss-6.6.0+dfsg/test/swiss/Makefile.in-80- *) f=$$p;; \
emboss-6.6.0+dfsg/test/swiss/Makefile.in-81- esac;
emboss-6.6.0+dfsg/test/swiss/Makefile.in:82:am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
emboss-6.6.0+dfsg/test/swiss/Makefile.in-83-am__install_max = 40
emboss-6.6.0+dfsg/test/swiss/Makefile.in-84-am__nobase_strip_setup = \
emboss-6.6.0+dfsg/test/swiss/Makefile.in:85: srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
emboss-6.6.0+dfsg/test/swiss/Makefile.in-86-am__nobase_strip = \
##############################################
emboss-6.6.0+dfsg/test/swiss/Makefile.in-331- @list='$(pkgdata_DATA)'; test -n "$(pkgdatadir)" || list=; \
emboss-6.6.0+dfsg/test/swiss/Makefile.in:332: files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
emboss-6.6.0+dfsg/test/swiss/Makefile.in-333- dir='$(DESTDIR)$(pkgdatadir)'; $(am__uninstall_files_from_dir)
##############################################
emboss-6.6.0+dfsg/test/swiss/Makefile.in-343-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/test/swiss/Makefile.in:344: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/swiss/Makefile.in:345: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/swiss/Makefile.in-346- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/test/swiss/Makefile.in-357- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/test/swiss/Makefile.in:358: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/test/swiss/Makefile.in-359- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/test/Makefile.in-99- while test -n "$$dir1"; do \
emboss-6.6.0+dfsg/test/Makefile.in:100: first=`echo "$$dir1" | sed -e "$$sed_first"`; \
emboss-6.6.0+dfsg/test/Makefile.in-101- if test "$$first" != "."; then \
emboss-6.6.0+dfsg/test/Makefile.in-102- if test "$$first" = ".."; then \
emboss-6.6.0+dfsg/test/Makefile.in:103: dir2=`echo "$$dir0" | sed -e "$$sed_last"`/"$$dir2"; \
emboss-6.6.0+dfsg/test/Makefile.in:104: dir0=`echo "$$dir0" | sed -e "$$sed_butlast"`; \
emboss-6.6.0+dfsg/test/Makefile.in-105- else \
emboss-6.6.0+dfsg/test/Makefile.in:106: first2=`echo "$$dir2" | sed -e "$$sed_first"`; \
emboss-6.6.0+dfsg/test/Makefile.in-107- if test "$$first2" = "$$first"; then \
emboss-6.6.0+dfsg/test/Makefile.in:108: dir2=`echo "$$dir2" | sed -e "$$sed_rest"`; \
emboss-6.6.0+dfsg/test/Makefile.in-109- else \
##############################################
emboss-6.6.0+dfsg/test/Makefile.in-114- fi; \
emboss-6.6.0+dfsg/test/Makefile.in:115: dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \
emboss-6.6.0+dfsg/test/Makefile.in-116- done; \
##############################################
emboss-6.6.0+dfsg/test/Makefile.in-335- dot_seen=no; \
emboss-6.6.0+dfsg/test/Makefile.in:336: target=`echo $@ | sed s/-recursive//`; \
emboss-6.6.0+dfsg/test/Makefile.in-337- case "$@" in \
##############################################
emboss-6.6.0+dfsg/test/Makefile.in-425-GTAGS:
emboss-6.6.0+dfsg/test/Makefile.in:426: here=`$(am__cd) $(top_builddir) && pwd` \
emboss-6.6.0+dfsg/test/Makefile.in-427- && $(am__cd) $(top_srcdir) \
##############################################
emboss-6.6.0+dfsg/test/Makefile.in-447-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/test/Makefile.in:448: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/Makefile.in:449: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/test/Makefile.in-450- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/test/Makefile.in-461- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/test/Makefile.in:462: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/test/Makefile.in-463- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/aclocal.m4-95-# iff we strip the leading $srcdir from $ac_aux_dir. That would be:
emboss-6.6.0+dfsg/aclocal.m4:96:# am_aux_dir='\$(top_srcdir)/'`expr "$ac_aux_dir" : "$srcdir//*\(.*\)"`
emboss-6.6.0+dfsg/aclocal.m4-97-# and then we would define $MISSING as
##############################################
emboss-6.6.0+dfsg/aclocal.m4-111-# expand $ac_aux_dir to an absolute path
emboss-6.6.0+dfsg/aclocal.m4:112:am_aux_dir=`cd $ac_aux_dir && pwd`
emboss-6.6.0+dfsg/aclocal.m4-113-])
##############################################
emboss-6.6.0+dfsg/aclocal.m4-212- if test "$am_compiler_list" = ""; then
emboss-6.6.0+dfsg/aclocal.m4:213: am_compiler_list=`sed -n ['s/^#*\([a-zA-Z0-9]*\))$/\1/p'] < ./depcomp`
emboss-6.6.0+dfsg/aclocal.m4-214- fi
##############################################
emboss-6.6.0+dfsg/aclocal.m4-364- # Strip MF so we end up with the name of the file.
emboss-6.6.0+dfsg/aclocal.m4:365: mf=`echo "$mf" | sed -e 's/:.*$//'`
emboss-6.6.0+dfsg/aclocal.m4-366- # Check whether this is an Automake generated Makefile or not.
##############################################
emboss-6.6.0+dfsg/aclocal.m4-373- if sed -n 's,^#.*generated by automake.*,X,p' "$mf" | grep X >/dev/null 2>&1; then
emboss-6.6.0+dfsg/aclocal.m4:374: dirpart=`AS_DIRNAME("$mf")`
emboss-6.6.0+dfsg/aclocal.m4-375- else
##############################################
emboss-6.6.0+dfsg/aclocal.m4-379- # from the Makefile without running 'make'.
emboss-6.6.0+dfsg/aclocal.m4:380: DEPDIR=`sed -n 's/^DEPDIR = //p' < "$mf"`
emboss-6.6.0+dfsg/aclocal.m4-381- test -z "$DEPDIR" && continue
emboss-6.6.0+dfsg/aclocal.m4:382: am__include=`sed -n 's/^am__include = //p' < "$mf"`
emboss-6.6.0+dfsg/aclocal.m4-383- test -z "am__include" && continue
emboss-6.6.0+dfsg/aclocal.m4:384: am__quote=`sed -n 's/^am__quote = //p' < "$mf"`
emboss-6.6.0+dfsg/aclocal.m4-385- # Find all dependency output files, they are included files with
##############################################
emboss-6.6.0+dfsg/aclocal.m4-393- test -f "$dirpart/$file" && continue
emboss-6.6.0+dfsg/aclocal.m4:394: fdir=`AS_DIRNAME(["$file"])`
emboss-6.6.0+dfsg/aclocal.m4-395- AS_MKDIR_P([$dirpart/$fdir])
##############################################
emboss-6.6.0+dfsg/aclocal.m4-447-AC_REQUIRE([AC_PROG_INSTALL])dnl
emboss-6.6.0+dfsg/aclocal.m4:448:if test "`cd $srcdir && pwd`" != "`pwd`"; then
emboss-6.6.0+dfsg/aclocal.m4-449- # Use -I$(srcdir) only when $(srcdir) != ., so that make's output
##############################################
emboss-6.6.0+dfsg/aclocal.m4-566- * )
emboss-6.6.0+dfsg/aclocal.m4:567: _am_stamp_count=`expr $_am_stamp_count + 1` ;;
emboss-6.6.0+dfsg/aclocal.m4-568- esac
emboss-6.6.0+dfsg/aclocal.m4-569-done
emboss-6.6.0+dfsg/aclocal.m4:570:echo "timestamp for $_am_arg" >`AS_DIRNAME(["$_am_arg"])`/stamp-h[]$_am_stamp_count])
emboss-6.6.0+dfsg/aclocal.m4-571-
##############################################
emboss-6.6.0+dfsg/aclocal.m4-643-# Ignore all kinds of additional output from 'make'.
emboss-6.6.0+dfsg/aclocal.m4:644:case `$am_make -s -f confmf 2> /dev/null` in #(
emboss-6.6.0+dfsg/aclocal.m4-645-*the\ am__doit\ target*)
##############################################
emboss-6.6.0+dfsg/aclocal.m4-653- echo '.include "confinc"' > confmf
emboss-6.6.0+dfsg/aclocal.m4:654: case `$am_make -s -f confmf 2> /dev/null` in #(
emboss-6.6.0+dfsg/aclocal.m4-655- *the\ am__doit\ target*)
##############################################
emboss-6.6.0+dfsg/aclocal.m4-778- echo "timestamp, slept: $am_has_slept" > conftest.file
emboss-6.6.0+dfsg/aclocal.m4:779: set X `ls -Lt "$srcdir/configure" conftest.file 2> /dev/null`
emboss-6.6.0+dfsg/aclocal.m4-780- if test "$[*]" = "X"; then
emboss-6.6.0+dfsg/aclocal.m4-781- # -L didn't work.
emboss-6.6.0+dfsg/aclocal.m4:782: set X `ls -t "$srcdir/configure" conftest.file`
emboss-6.6.0+dfsg/aclocal.m4-783- fi
##############################################
emboss-6.6.0+dfsg/missing-162- from any GNU archive site."
emboss-6.6.0+dfsg/missing:163: files=`sed -n 's/^[ ]*A[CM]_CONFIG_HEADER(\([^)]*\)).*/\1/p' ${configure_ac}`
emboss-6.6.0+dfsg/missing-164- test -z "$files" && files="config.h"
##############################################
emboss-6.6.0+dfsg/missing-194-
emboss-6.6.0+dfsg/missing:195: file=`echo "$*" | sed -n "$sed_output"`
emboss-6.6.0+dfsg/missing:196: test -z "$file" && file=`echo "$*" | sed -n "$sed_minuso"`
emboss-6.6.0+dfsg/missing-197- if test -f "$file"; then
##############################################
emboss-6.6.0+dfsg/missing-220- *.y)
emboss-6.6.0+dfsg/missing:221: SRCFILE=`echo "$LASTARG" | sed 's/y$/c/'`
emboss-6.6.0+dfsg/missing-222- if test -f "$SRCFILE"; then
##############################################
emboss-6.6.0+dfsg/missing-224- fi
emboss-6.6.0+dfsg/missing:225: SRCFILE=`echo "$LASTARG" | sed 's/y$/h/'`
emboss-6.6.0+dfsg/missing-226- if test -f "$SRCFILE"; then
##############################################
emboss-6.6.0+dfsg/missing-250- *.l)
emboss-6.6.0+dfsg/missing:251: SRCFILE=`echo "$LASTARG" | sed 's/l$/c/'`
emboss-6.6.0+dfsg/missing-252- if test -f "$SRCFILE"; then
##############################################
emboss-6.6.0+dfsg/missing-269-
emboss-6.6.0+dfsg/missing:270: file=`echo "$*" | sed -n "$sed_output"`
emboss-6.6.0+dfsg/missing:271: test -z "$file" && file=`echo "$*" | sed -n "$sed_minuso"`
emboss-6.6.0+dfsg/missing-272- if test -f "$file"; then
##############################################
emboss-6.6.0+dfsg/missing-289- # The file to touch is that specified with -o ...
emboss-6.6.0+dfsg/missing:290: file=`echo "$*" | sed -n "$sed_output"`
emboss-6.6.0+dfsg/missing:291: test -z "$file" && file=`echo "$*" | sed -n "$sed_minuso"`
emboss-6.6.0+dfsg/missing-292- if test -z "$file"; then
emboss-6.6.0+dfsg/missing-293- # ... or it is the one specified with @setfilename ...
emboss-6.6.0+dfsg/missing:294: infile=`echo "$*" | sed 's/.* \([^ ]*\) *$/\1/'`
emboss-6.6.0+dfsg/missing-295- file=`sed -n '
##############################################
emboss-6.6.0+dfsg/missing-301- # ... or it is derived from the source name (dir/f.texi becomes f.info)
emboss-6.6.0+dfsg/missing:302: test -z "$file" && file=`echo "$infile" | sed 's,.*/,,;s,.[^.]*$,,'`.info
emboss-6.6.0+dfsg/missing-303- fi
##############################################
emboss-6.6.0+dfsg/Makefile.in-114- while test -n "$$dir1"; do \
emboss-6.6.0+dfsg/Makefile.in:115: first=`echo "$$dir1" | sed -e "$$sed_first"`; \
emboss-6.6.0+dfsg/Makefile.in-116- if test "$$first" != "."; then \
emboss-6.6.0+dfsg/Makefile.in-117- if test "$$first" = ".."; then \
emboss-6.6.0+dfsg/Makefile.in:118: dir2=`echo "$$dir0" | sed -e "$$sed_last"`/"$$dir2"; \
emboss-6.6.0+dfsg/Makefile.in:119: dir0=`echo "$$dir0" | sed -e "$$sed_butlast"`; \
emboss-6.6.0+dfsg/Makefile.in-120- else \
emboss-6.6.0+dfsg/Makefile.in:121: first2=`echo "$$dir2" | sed -e "$$sed_first"`; \
emboss-6.6.0+dfsg/Makefile.in-122- if test "$$first2" = "$$first"; then \
emboss-6.6.0+dfsg/Makefile.in:123: dir2=`echo "$$dir2" | sed -e "$$sed_rest"`; \
emboss-6.6.0+dfsg/Makefile.in-124- else \
##############################################
emboss-6.6.0+dfsg/Makefile.in-129- fi; \
emboss-6.6.0+dfsg/Makefile.in:130: dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \
emboss-6.6.0+dfsg/Makefile.in-131- done; \
##############################################
emboss-6.6.0+dfsg/Makefile.in-382- dot_seen=no; \
emboss-6.6.0+dfsg/Makefile.in:383: target=`echo $@ | sed s/-recursive//`; \
emboss-6.6.0+dfsg/Makefile.in-384- case "$@" in \
##############################################
emboss-6.6.0+dfsg/Makefile.in-472-GTAGS:
emboss-6.6.0+dfsg/Makefile.in:473: here=`$(am__cd) $(top_builddir) && pwd` \
emboss-6.6.0+dfsg/Makefile.in-474- && $(am__cd) $(top_srcdir) \
##############################################
emboss-6.6.0+dfsg/Makefile.in-504-distdir: $(DISTFILES)
emboss-6.6.0+dfsg/Makefile.in:505: @case `sed 15q $(srcdir)/NEWS` in \
emboss-6.6.0+dfsg/Makefile.in-506- *"$(VERSION)"*) : ;; \
##############################################
emboss-6.6.0+dfsg/Makefile.in-512- test -d "$(distdir)" || mkdir "$(distdir)"
emboss-6.6.0+dfsg/Makefile.in:513: @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/Makefile.in:514: topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
emboss-6.6.0+dfsg/Makefile.in-515- list='$(DISTFILES)'; \
##############################################
emboss-6.6.0+dfsg/Makefile.in-526- if test -d $$d/$$file; then \
emboss-6.6.0+dfsg/Makefile.in:527: dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
emboss-6.6.0+dfsg/Makefile.in-528- if test -d "$(distdir)/$$file"; then \
##############################################
emboss-6.6.0+dfsg/Makefile.in-634- test -d $(distdir)/_build || exit 0; \
emboss-6.6.0+dfsg/Makefile.in:635: dc_install_base=`$(am__cd) $(distdir)/_inst && pwd | sed -e 's,^[^:\\/]:[\\/],/,'` \
emboss-6.6.0+dfsg/Makefile.in-636- && dc_destdir="$${TMPDIR-/tmp}/am-dc-$$$$/" \
##############################################
emboss-6.6.0+dfsg/Makefile.in-677- }; \
emboss-6.6.0+dfsg/Makefile.in:678: test `$(am__distuninstallcheck_listfiles) | wc -l` -eq 0 \
emboss-6.6.0+dfsg/Makefile.in-679- || { echo "ERROR: files left after uninstall:" ; \
##############################################
emboss-6.6.0+dfsg/Makefile.in-689- fi
emboss-6.6.0+dfsg/Makefile.in:690: @test `$(distcleancheck_listfiles) | wc -l` -eq 0 \
emboss-6.6.0+dfsg/Makefile.in-691- || { echo "ERROR: files left in build directory after distclean:" ; \
##############################################
emboss-6.6.0+dfsg/configure-46-if test -z "$BASH_VERSION$ZSH_VERSION" \
emboss-6.6.0+dfsg/configure:47: && (test "X`print -r -- $as_echo`" = "X$as_echo") 2>/dev/null; then
emboss-6.6.0+dfsg/configure-48- as_echo='print -r --'
emboss-6.6.0+dfsg/configure-49- as_echo_n='print -rn --'
emboss-6.6.0+dfsg/configure:50:elif (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
emboss-6.6.0+dfsg/configure-51- as_echo='printf %s\n'
##############################################
emboss-6.6.0+dfsg/configure-53-else
emboss-6.6.0+dfsg/configure:54: if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then
emboss-6.6.0+dfsg/configure-55- as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"'
##############################################
emboss-6.6.0+dfsg/configure-63- expr "X$arg" : "X\\(.*\\)$as_nl";
emboss-6.6.0+dfsg/configure:64: arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
emboss-6.6.0+dfsg/configure-65- esac;
##############################################
emboss-6.6.0+dfsg/configure-200- eval 'test \"x\$as_lineno_1'\$as_run'\" != \"x\$as_lineno_2'\$as_run'\" &&
emboss-6.6.0+dfsg/configure:201: test \"x\`expr \$as_lineno_1'\$as_run' + 1\`\" = \"x\$as_lineno_2'\$as_run'\"' || exit 1
emboss-6.6.0+dfsg/configure-202-
##############################################
emboss-6.6.0+dfsg/configure-207- PATH=/empty FPATH=/empty; export PATH FPATH
emboss-6.6.0+dfsg/configure:208: test \"X\`printf %s \$ECHO\`\" = \"X\$ECHO\" \\
emboss-6.6.0+dfsg/configure:209: || test \"X\`print -r -- \$ECHO\`\" = \"X\$ECHO\" ) || exit 1
emboss-6.6.0+dfsg/configure-210-test \$(( 1 + 1 )) = 2 || exit 1"
##############################################
emboss-6.6.0+dfsg/configure-336- case $as_dir in #(
emboss-6.6.0+dfsg/configure:337: *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
emboss-6.6.0+dfsg/configure-338- *) as_qdir=$as_dir;;
##############################################
emboss-6.6.0+dfsg/configure-409- {
emboss-6.6.0+dfsg/configure:410: as_val=`expr "$@" || test $? -eq 1`
emboss-6.6.0+dfsg/configure-411- }
##############################################
emboss-6.6.0+dfsg/configure-416-# ----------------------------------------
emboss-6.6.0+dfsg/configure:417:# Output "`basename $0`: error: ERROR" to stderr. If LINENO and LOG_FD are
emboss-6.6.0+dfsg/configure-418-# provided, also output the error to LOG_FD, referencing LINENO. Then exit the
##############################################
emboss-6.6.0+dfsg/configure-479- eval 'test "x$as_lineno_1'$as_run'" != "x$as_lineno_2'$as_run'" &&
emboss-6.6.0+dfsg/configure:480: test "x`expr $as_lineno_1'$as_run' + 1`" = "x$as_lineno_2'$as_run'"' || {
emboss-6.6.0+dfsg/configure-481- # Blame Lee E. McMahon (1931-1989) for sed's syntax. :-)
##############################################
emboss-6.6.0+dfsg/configure-940- case $ac_option in
emboss-6.6.0+dfsg/configure:941: *=?*) ac_optarg=`expr "X$ac_option" : '[^=]*=\(.*\)'` ;;
emboss-6.6.0+dfsg/configure-942- *=) ac_optarg= ;;
##############################################
emboss-6.6.0+dfsg/configure-984- -disable-* | --disable-*)
emboss-6.6.0+dfsg/configure:985: ac_useropt=`expr "x$ac_option" : 'x-*disable-\(.*\)'`
emboss-6.6.0+dfsg/configure-986- # Reject names that are not valid shell variable names.
##############################################
emboss-6.6.0+dfsg/configure-989- ac_useropt_orig=$ac_useropt
emboss-6.6.0+dfsg/configure:990: ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
emboss-6.6.0+dfsg/configure-991- case $ac_user_opts in
##############################################
emboss-6.6.0+dfsg/configure-1010- -enable-* | --enable-*)
emboss-6.6.0+dfsg/configure:1011: ac_useropt=`expr "x$ac_option" : 'x-*enable-\([^=]*\)'`
emboss-6.6.0+dfsg/configure-1012- # Reject names that are not valid shell variable names.
##############################################
emboss-6.6.0+dfsg/configure-1015- ac_useropt_orig=$ac_useropt
emboss-6.6.0+dfsg/configure:1016: ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
emboss-6.6.0+dfsg/configure-1017- case $ac_user_opts in
##############################################
emboss-6.6.0+dfsg/configure-1214- -with-* | --with-*)
emboss-6.6.0+dfsg/configure:1215: ac_useropt=`expr "x$ac_option" : 'x-*with-\([^=]*\)'`
emboss-6.6.0+dfsg/configure-1216- # Reject names that are not valid shell variable names.
##############################################
emboss-6.6.0+dfsg/configure-1219- ac_useropt_orig=$ac_useropt
emboss-6.6.0+dfsg/configure:1220: ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
emboss-6.6.0+dfsg/configure-1221- case $ac_user_opts in
##############################################
emboss-6.6.0+dfsg/configure-1230- -without-* | --without-*)
emboss-6.6.0+dfsg/configure:1231: ac_useropt=`expr "x$ac_option" : 'x-*without-\(.*\)'`
emboss-6.6.0+dfsg/configure-1232- # Reject names that are not valid shell variable names.
##############################################
emboss-6.6.0+dfsg/configure-1235- ac_useropt_orig=$ac_useropt
emboss-6.6.0+dfsg/configure:1236: ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
emboss-6.6.0+dfsg/configure-1237- case $ac_user_opts in
##############################################
emboss-6.6.0+dfsg/configure-1268- *=*)
emboss-6.6.0+dfsg/configure:1269: ac_envvar=`expr "x$ac_option" : 'x\([^=]*\)='`
emboss-6.6.0+dfsg/configure-1270- # Reject names that are not valid shell variable names.
##############################################
emboss-6.6.0+dfsg/configure-1289-if test -n "$ac_prev"; then
emboss-6.6.0+dfsg/configure:1290: ac_option=--`echo $ac_prev | sed 's/_/-/g'`
emboss-6.6.0+dfsg/configure-1291- as_fn_error $? "missing argument to $ac_option"
##############################################
emboss-6.6.0+dfsg/configure-1311- */ )
emboss-6.6.0+dfsg/configure:1312: ac_val=`expr "X$ac_val" : 'X\(.*[^/]\)' \| "X$ac_val" : 'X\(.*\)'`
emboss-6.6.0+dfsg/configure-1313- eval $ac_var=\$ac_val;;
##############################################
emboss-6.6.0+dfsg/configure-1346-ac_ls_di=`ls -di .` &&
emboss-6.6.0+dfsg/configure:1347:ac_pwd_ls_di=`cd "$ac_pwd" && ls -di .` ||
emboss-6.6.0+dfsg/configure-1348- as_fn_error $? "working directory cannot be determined"
##############################################
emboss-6.6.0+dfsg/configure-1402-case $srcdir in
emboss-6.6.0+dfsg/configure:1403:*/) srcdir=`expr "X$srcdir" : 'X\(.*[^/]\)' \| "X$srcdir" : 'X\(.*\)'`;;
emboss-6.6.0+dfsg/configure-1404-esac
##############################################
emboss-6.6.0+dfsg/configure-1445-By default, \`make install' will install all the files in
emboss-6.6.0+dfsg/configure:1446:\`$ac_default_prefix/bin', \`$ac_default_prefix/lib' etc. You can specify
emboss-6.6.0+dfsg/configure:1447:an installation prefix other than \`$ac_default_prefix' using \`--prefix',
emboss-6.6.0+dfsg/configure-1448-for instance \`--prefix=\$HOME'.
##############################################
emboss-6.6.0+dfsg/configure-1602-*)
emboss-6.6.0+dfsg/configure:1603: ac_dir_suffix=/`$as_echo "$ac_dir" | sed 's|^\.[\\/]||'`
emboss-6.6.0+dfsg/configure-1604- # A ".." for each directory in $ac_dir_suffix.
emboss-6.6.0+dfsg/configure:1605: ac_top_builddir_sub=`$as_echo "$ac_dir_suffix" | sed 's|/[^\\/]*|/..|g;s|/||'`
emboss-6.6.0+dfsg/configure-1606- case $ac_top_builddir_sub in
##############################################
emboss-6.6.0+dfsg/configure-2265- *\'*)
emboss-6.6.0+dfsg/configure:2266: ac_arg=`$as_echo "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;;
emboss-6.6.0+dfsg/configure-2267- esac
##############################################
emboss-6.6.0+dfsg/configure-2348- case $ac_val in
emboss-6.6.0+dfsg/configure:2349: *\'\''*) ac_val=`$as_echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
emboss-6.6.0+dfsg/configure-2350- esac
##############################################
emboss-6.6.0+dfsg/configure-2363- case $ac_val in
emboss-6.6.0+dfsg/configure:2364: *\'\''*) ac_val=`$as_echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
emboss-6.6.0+dfsg/configure-2365- esac
##############################################
emboss-6.6.0+dfsg/configure-2483- set,)
emboss-6.6.0+dfsg/configure:2484: { $as_echo "$as_me:${as_lineno-$LINENO}: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&5
emboss-6.6.0+dfsg/configure:2485:$as_echo "$as_me: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&2;}
emboss-6.6.0+dfsg/configure-2486- ac_cache_corrupted=: ;;
##############################################
emboss-6.6.0+dfsg/configure-2494- # differences in whitespace do not lead to failure.
emboss-6.6.0+dfsg/configure:2495: ac_old_val_w=`echo x $ac_old_val`
emboss-6.6.0+dfsg/configure:2496: ac_new_val_w=`echo x $ac_new_val`
emboss-6.6.0+dfsg/configure-2497- if test "$ac_old_val_w" != "$ac_new_val_w"; then
##############################################
emboss-6.6.0+dfsg/configure-2514- case $ac_new_val in
emboss-6.6.0+dfsg/configure:2515: *\'*) ac_arg=$ac_var=`$as_echo "$ac_new_val" | sed "s/'/'\\\\\\\\''/g"` ;;
emboss-6.6.0+dfsg/configure-2516- *) ac_arg=$ac_var=$ac_new_val ;;
##############################################
emboss-6.6.0+dfsg/configure-2747-$as_echo_n "checking whether the C compiler works... " >&6; }
emboss-6.6.0+dfsg/configure:2748:ac_link_default=`$as_echo "$ac_link" | sed 's/ -o *conftest[^ ]*//'`
emboss-6.6.0+dfsg/configure-2749-
##############################################
emboss-6.6.0+dfsg/configure-2791- then :; else
emboss-6.6.0+dfsg/configure:2792: ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
emboss-6.6.0+dfsg/configure-2793- fi
##############################################
emboss-6.6.0+dfsg/configure-2851- *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) ;;
emboss-6.6.0+dfsg/configure:2852: *.* ) ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
emboss-6.6.0+dfsg/configure-2853- break;;
##############################################
emboss-6.6.0+dfsg/configure-2960- *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM ) ;;
emboss-6.6.0+dfsg/configure:2961: *) ac_cv_objext=`expr "$ac_file" : '.*\.\(.*\)'`
emboss-6.6.0+dfsg/configure-2962- break;;
##############################################
emboss-6.6.0+dfsg/configure-3720-set x ${MAKE-make}
emboss-6.6.0+dfsg/configure:3721:ac_make=`$as_echo "$2" | sed 's/+/p/g; s/[^a-zA-Z0-9_]/_/g'`
emboss-6.6.0+dfsg/configure-3722-if eval \${ac_cv_prog_make_${ac_make}_set+:} false; then :
##############################################
emboss-6.6.0+dfsg/configure-3730-# GNU make sometimes prints "make[1]: Entering ...", which would confuse us.
emboss-6.6.0+dfsg/configure:3731:case `${MAKE-make} -f conftest.make 2>/dev/null` in
emboss-6.6.0+dfsg/configure-3732- *@@@%%%=?*=@@@%%%*)
##############################################
emboss-6.6.0+dfsg/configure-3762- as_fn_executable_p "$as_dir/$ac_prog$ac_exec_ext" || continue
emboss-6.6.0+dfsg/configure:3763: case `"$as_dir/$ac_prog$ac_exec_ext" --version 2>&1` in #(
emboss-6.6.0+dfsg/configure-3764- 'mkdir (GNU coreutils) '* | \
##############################################
emboss-6.6.0+dfsg/configure-3817- echo "timestamp, slept: $am_has_slept" > conftest.file
emboss-6.6.0+dfsg/configure:3818: set X `ls -Lt "$srcdir/configure" conftest.file 2> /dev/null`
emboss-6.6.0+dfsg/configure-3819- if test "$*" = "X"; then
emboss-6.6.0+dfsg/configure-3820- # -L didn't work.
emboss-6.6.0+dfsg/configure:3821: set X `ls -t "$srcdir/configure" conftest.file`
emboss-6.6.0+dfsg/configure-3822- fi
##############################################
emboss-6.6.0+dfsg/configure-3868-ac_script='s/[\\$]/&&/g;s/;s,x,x,$//'
emboss-6.6.0+dfsg/configure:3869:program_transform_name=`$as_echo "$program_transform_name" | sed "$ac_script"`
emboss-6.6.0+dfsg/configure-3870-
emboss-6.6.0+dfsg/configure-3871-# expand $ac_aux_dir to an absolute path
emboss-6.6.0+dfsg/configure:3872:am_aux_dir=`cd $ac_aux_dir && pwd`
emboss-6.6.0+dfsg/configure-3873-
##############################################
emboss-6.6.0+dfsg/configure-4028-# Ignore all kinds of additional output from 'make'.
emboss-6.6.0+dfsg/configure:4029:case `$am_make -s -f confmf 2> /dev/null` in #(
emboss-6.6.0+dfsg/configure-4030-*the\ am__doit\ target*)
##############################################
emboss-6.6.0+dfsg/configure-4038- echo '.include "confinc"' > confmf
emboss-6.6.0+dfsg/configure:4039: case `$am_make -s -f confmf 2> /dev/null` in #(
emboss-6.6.0+dfsg/configure-4040- *the\ am__doit\ target*)
##############################################
emboss-6.6.0+dfsg/configure-4071-
emboss-6.6.0+dfsg/configure:4072:if test "`cd $srcdir && pwd`" != "`pwd`"; then
emboss-6.6.0+dfsg/configure-4073- # Use -I$(srcdir) only when $(srcdir) != ., so that make's output
##############################################
emboss-6.6.0+dfsg/configure-4167- if test "$am_compiler_list" = ""; then
emboss-6.6.0+dfsg/configure:4168: am_compiler_list=`sed -n 's/^#*\([a-zA-Z0-9]*\))$/\1/p' < ./depcomp`
emboss-6.6.0+dfsg/configure-4169- fi
##############################################
emboss-6.6.0+dfsg/configure-4295- if test "$am_compiler_list" = ""; then
emboss-6.6.0+dfsg/configure:4296: am_compiler_list=`sed -n 's/^#*\([a-zA-Z0-9]*\))$/\1/p' < ./depcomp`
emboss-6.6.0+dfsg/configure-4297- fi
##############################################
emboss-6.6.0+dfsg/configure-4433-test "x$ac_build_alias" = x &&
emboss-6.6.0+dfsg/configure:4434: ac_build_alias=`$SHELL "$ac_aux_dir/config.guess"`
emboss-6.6.0+dfsg/configure-4435-test "x$ac_build_alias" = x &&
emboss-6.6.0+dfsg/configure-4436- as_fn_error $? "cannot guess build type; you must specify one" "$LINENO" 5
emboss-6.6.0+dfsg/configure:4437:ac_cv_build=`$SHELL "$ac_aux_dir/config.sub" $ac_build_alias` ||
emboss-6.6.0+dfsg/configure-4438- as_fn_error $? "$SHELL $ac_aux_dir/config.sub $ac_build_alias failed" "$LINENO" 5
##############################################
emboss-6.6.0+dfsg/configure-4457-IFS=$ac_save_IFS
emboss-6.6.0+dfsg/configure:4458:case $build_os in *\ *) build_os=`echo "$build_os" | sed 's/ /-/g'`;; esac
emboss-6.6.0+dfsg/configure-4459-
##############################################
emboss-6.6.0+dfsg/configure-4468-else
emboss-6.6.0+dfsg/configure:4469: ac_cv_host=`$SHELL "$ac_aux_dir/config.sub" $host_alias` ||
emboss-6.6.0+dfsg/configure-4470- as_fn_error $? "$SHELL $ac_aux_dir/config.sub $host_alias failed" "$LINENO" 5
##############################################
emboss-6.6.0+dfsg/configure-4490-IFS=$ac_save_IFS
emboss-6.6.0+dfsg/configure:4491:case $host_os in *\ *) host_os=`echo "$host_os" | sed 's/ /-/g'`;; esac
emboss-6.6.0+dfsg/configure-4492-
##############################################
emboss-6.6.0+dfsg/configure-4518-if test "X`( print -r -- -n ) 2>/dev/null`" = X-n && \
emboss-6.6.0+dfsg/configure:4519: test "X`print -r -- $ECHO 2>/dev/null`" = "X$ECHO"; then
emboss-6.6.0+dfsg/configure-4520- ECHO='print -r --'
emboss-6.6.0+dfsg/configure:4521:elif test "X`printf %s $ECHO 2>/dev/null`" = "X$ECHO"; then
emboss-6.6.0+dfsg/configure-4522- ECHO='printf %s\n'
##############################################
emboss-6.6.0+dfsg/configure-4587- # Check for GNU $ac_path_SED
emboss-6.6.0+dfsg/configure:4588:case `"$ac_path_SED" --version 2>&1` in
emboss-6.6.0+dfsg/configure-4589-*GNU*)
##############################################
emboss-6.6.0+dfsg/configure-4663- # Check for GNU $ac_path_GREP
emboss-6.6.0+dfsg/configure:4664:case `"$ac_path_GREP" --version 2>&1` in
emboss-6.6.0+dfsg/configure-4665-*GNU*)
##############################################
emboss-6.6.0+dfsg/configure-4729- # Check for GNU $ac_path_EGREP
emboss-6.6.0+dfsg/configure:4730:case `"$ac_path_EGREP" --version 2>&1` in
emboss-6.6.0+dfsg/configure-4731-*GNU*)
##############################################
emboss-6.6.0+dfsg/configure-4796- # Check for GNU $ac_path_FGREP
emboss-6.6.0+dfsg/configure:4797:case `"$ac_path_FGREP" --version 2>&1` in
emboss-6.6.0+dfsg/configure-4798-*GNU*)
##############################################
emboss-6.6.0+dfsg/configure-4876- # gcc leaves a trailing carriage return which upsets mingw
emboss-6.6.0+dfsg/configure:4877: ac_prog=`($CC -print-prog-name=ld) 2>&5 | tr -d '\015'` ;;
emboss-6.6.0+dfsg/configure-4878- *)
emboss-6.6.0+dfsg/configure:4879: ac_prog=`($CC -print-prog-name=ld) 2>&5` ;;
emboss-6.6.0+dfsg/configure-4880- esac
##############################################
emboss-6.6.0+dfsg/configure-4885- # Canonicalize the pathname of ld
emboss-6.6.0+dfsg/configure:4886: ac_prog=`$ECHO "$ac_prog"| $SED 's%\\\\%/%g'`
emboss-6.6.0+dfsg/configure-4887- while $ECHO "$ac_prog" | $GREP "$re_direlt" > /dev/null 2>&1; do
emboss-6.6.0+dfsg/configure:4888: ac_prog=`$ECHO $ac_prog| $SED "s%$re_direlt%/%"`
emboss-6.6.0+dfsg/configure-4889- done
##############################################
emboss-6.6.0+dfsg/configure-4920- # Break only if it was the GNU/non-GNU ld that we prefer.
emboss-6.6.0+dfsg/configure:4921: case `"$lt_cv_path_LD" -v 2>&1 </dev/null` in
emboss-6.6.0+dfsg/configure-4922- *GNU* | *'with BFD'*)
##############################################
emboss-6.6.0+dfsg/configure-4951- # I'd rather use --version here, but apparently some GNU lds only accept -v.
emboss-6.6.0+dfsg/configure:4952:case `$LD -v 2>&1 </dev/null` in
emboss-6.6.0+dfsg/configure-4953-*GNU* | *'with BFD'*)
##############################################
emboss-6.6.0+dfsg/configure-4996- # Tru64's nm complains that /dev/null is an invalid object file
emboss-6.6.0+dfsg/configure:4997: case `"$tmp_nm" -B /dev/null 2>&1 | sed '1q'` in
emboss-6.6.0+dfsg/configure-4998- */dev/null* | *'Invalid file or object type'*)
##############################################
emboss-6.6.0+dfsg/configure-5002- *)
emboss-6.6.0+dfsg/configure:5003: case `"$tmp_nm" -p /dev/null 2>&1 | sed '1q'` in
emboss-6.6.0+dfsg/configure-5004- */dev/null*)
##############################################
emboss-6.6.0+dfsg/configure-5130-
emboss-6.6.0+dfsg/configure:5131: case `$DUMPBIN -symbols /dev/null 2>&1 | sed '1q'` in
emboss-6.6.0+dfsg/configure-5132- *COFF*)
##############################################
emboss-6.6.0+dfsg/configure-5231- # And add a safety zone
emboss-6.6.0+dfsg/configure:5232: lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \/ 4`
emboss-6.6.0+dfsg/configure:5233: lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \* 3`
emboss-6.6.0+dfsg/configure-5234- ;;
##############################################
emboss-6.6.0+dfsg/configure-5264- if test -n "$kargmax"; then
emboss-6.6.0+dfsg/configure:5265: lt_cv_sys_max_cmd_len=`echo $kargmax | sed 's/.*[ ]//'`
emboss-6.6.0+dfsg/configure-5266- else
##############################################
emboss-6.6.0+dfsg/configure-5272- if test -n "$lt_cv_sys_max_cmd_len"; then
emboss-6.6.0+dfsg/configure:5273: lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \/ 4`
emboss-6.6.0+dfsg/configure:5274: lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \* 3`
emboss-6.6.0+dfsg/configure-5275- else
##############################################
emboss-6.6.0+dfsg/configure-5284- # we can't tell.
emboss-6.6.0+dfsg/configure:5285: while { test "X"`env echo "$teststring$teststring" 2>/dev/null` \
emboss-6.6.0+dfsg/configure-5286- = "X$teststring$teststring"; } >/dev/null 2>&1 &&
##############################################
emboss-6.6.0+dfsg/configure-5288- do
emboss-6.6.0+dfsg/configure:5289: i=`expr $i + 1`
emboss-6.6.0+dfsg/configure-5290- teststring=$teststring$teststring
##############################################
emboss-6.6.0+dfsg/configure-5292- # Only check the string length outside the loop.
emboss-6.6.0+dfsg/configure:5293: lt_cv_sys_max_cmd_len=`expr "X$teststring" : ".*" 2>&1`
emboss-6.6.0+dfsg/configure-5294- teststring=
##############################################
emboss-6.6.0+dfsg/configure-5297- # linker. It appears as though 1/2 is a usable value.
emboss-6.6.0+dfsg/configure:5298: lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \/ 2`
emboss-6.6.0+dfsg/configure-5299- fi
##############################################
emboss-6.6.0+dfsg/configure-5737-openbsd*)
emboss-6.6.0+dfsg/configure:5738: if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then
emboss-6.6.0+dfsg/configure-5739- lt_cv_deplibs_check_method='match_pattern /lib[^/]+(\.so\.[0-9]+\.[0-9]+|\.so|_pic\.a)$'
##############################################
emboss-6.6.0+dfsg/configure-5804- else
emboss-6.6.0+dfsg/configure:5805: file_magic_glob=`echo aAbBcCdDeEfFgGhHiIjJkKlLmMnNoOpPqQrRsStTuUvVwWxXyYzZ | $SED -e "s/\(..\)/s\/[\1]\/[\1]\/g;/g"`
emboss-6.6.0+dfsg/configure-5806- fi
##############################################
emboss-6.6.0+dfsg/configure-5949- # decide which to use based on capabilities of $DLLTOOL
emboss-6.6.0+dfsg/configure:5950: case `$DLLTOOL --help 2>&1` in
emboss-6.6.0+dfsg/configure-5951- *--identify-strict*)
##############################################
emboss-6.6.0+dfsg/configure-6471-# If we're using GNU nm, then use its standard symbol codes.
emboss-6.6.0+dfsg/configure:6472:case `$NM -V 2>&1` in
emboss-6.6.0+dfsg/configure-6473-*GNU* | *'with BFD'*)
##############################################
emboss-6.6.0+dfsg/configure-6489-mingw*)
emboss-6.6.0+dfsg/configure:6490: opt_cr=`$ECHO 'x\{0,1\}' | tr x '\015'` # option cr in regexp
emboss-6.6.0+dfsg/configure-6491- ;;
##############################################
emboss-6.6.0+dfsg/configure-6708- if test "$GCC" = yes; then
emboss-6.6.0+dfsg/configure:6709: lt_sysroot=`$CC --print-sysroot 2>/dev/null`
emboss-6.6.0+dfsg/configure-6710- fi
##############################################
emboss-6.6.0+dfsg/configure-6712- /*)
emboss-6.6.0+dfsg/configure:6713: lt_sysroot=`echo "$with_sysroot" | sed -e "$sed_quote_subst"`
emboss-6.6.0+dfsg/configure-6714- ;; #(
##############################################
emboss-6.6.0+dfsg/configure-6748- test $ac_status = 0; }; then
emboss-6.6.0+dfsg/configure:6749: case `/usr/bin/file conftest.$ac_objext` in
emboss-6.6.0+dfsg/configure-6750- *ELF-32*)
##############################################
emboss-6.6.0+dfsg/configure-6768- if test "$lt_cv_prog_gnu_ld" = yes; then
emboss-6.6.0+dfsg/configure:6769: case `/usr/bin/file conftest.$ac_objext` in
emboss-6.6.0+dfsg/configure-6770- *32-bit*)
##############################################
emboss-6.6.0+dfsg/configure-6780- else
emboss-6.6.0+dfsg/configure:6781: case `/usr/bin/file conftest.$ac_objext` in
emboss-6.6.0+dfsg/configure-6782- *32-bit*)
##############################################
emboss-6.6.0+dfsg/configure-7797-do :
emboss-6.6.0+dfsg/configure:7798: as_ac_Header=`$as_echo "ac_cv_header_$ac_header" | $as_tr_sh`
emboss-6.6.0+dfsg/configure-7799-ac_fn_c_check_header_compile "$LINENO" "$ac_header" "$as_ac_Header" "$ac_includes_default
##############################################
emboss-6.6.0+dfsg/configure-7802- cat >>confdefs.h <<_ACEOF
emboss-6.6.0+dfsg/configure:7803:#define `$as_echo "HAVE_$ac_header" | $as_tr_cpp` 1
emboss-6.6.0+dfsg/configure-7804-_ACEOF
##############################################
emboss-6.6.0+dfsg/configure-7829- case ${2} in
emboss-6.6.0+dfsg/configure:7830: .*) func_stripname_result=`$ECHO "${3}" | $SED "s%^${1}%%; s%\\\\${2}\$%%"`;;
emboss-6.6.0+dfsg/configure:7831: *) func_stripname_result=`$ECHO "${3}" | $SED "s%^${1}%%; s%${2}\$%%"`;;
emboss-6.6.0+dfsg/configure-7832- esac
##############################################
emboss-6.6.0+dfsg/configure-8099-done
emboss-6.6.0+dfsg/configure:8100:cc_basename=`$ECHO "$cc_temp" | $SED "s%.*/%%; s%^$host_alias-%%"`
emboss-6.6.0+dfsg/configure-8101-
##############################################
emboss-6.6.0+dfsg/configure-8128- "file_magic "*)
emboss-6.6.0+dfsg/configure:8129: file_magic_regex=`expr "$deplibs_check_method" : "file_magic \(.*\)"`
emboss-6.6.0+dfsg/configure-8130- MAGIC_CMD="$lt_cv_path_MAGIC_CMD"
##############################################
emboss-6.6.0+dfsg/configure-8194- "file_magic "*)
emboss-6.6.0+dfsg/configure:8195: file_magic_regex=`expr "$deplibs_check_method" : "file_magic \(.*\)"`
emboss-6.6.0+dfsg/configure-8196- MAGIC_CMD="$lt_cv_path_MAGIC_CMD"
##############################################
emboss-6.6.0+dfsg/configure-8561- *)
emboss-6.6.0+dfsg/configure:8562: case `$CC -V 2>&1 | sed 5q` in
emboss-6.6.0+dfsg/configure-8563- *Sun\ Ceres\ Fortran* | *Sun*Fortran*\ [1-7].* | *Sun*Fortran*\ 8.[0-3]*)
##############################################
emboss-6.6.0+dfsg/configure-8921- if test "$hard_links" = no; then
emboss-6.6.0+dfsg/configure:8922: { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: \`$CC' does not support \`-c -o', so \`make -j' may be unsafe" >&5
emboss-6.6.0+dfsg/configure:8923:$as_echo "$as_me: WARNING: \`$CC' does not support \`-c -o', so \`make -j' may be unsafe" >&2;}
emboss-6.6.0+dfsg/configure-8924- need_locks=warn
##############################################
emboss-6.6.0+dfsg/configure-9007- # shared libraries, regardless of the interface used.
emboss-6.6.0+dfsg/configure:9008: case `$LD -v 2>&1` in
emboss-6.6.0+dfsg/configure-9009- *\ \(GNU\ Binutils\)\ 2.19.5*) ;;
##############################################
emboss-6.6.0+dfsg/configure-9039- supports_anon_versioning=no
emboss-6.6.0+dfsg/configure:9040: case `$LD -v 2>&1` in
emboss-6.6.0+dfsg/configure-9041- *GNU\ gold*) supports_anon_versioning=yes ;;
##############################################
emboss-6.6.0+dfsg/configure-9108- # is EXPORTS), use it as is; otherwise, prepend...
emboss-6.6.0+dfsg/configure:9109: archive_expsym_cmds='if test "x`$SED 1q $export_symbols`" = xEXPORTS; then
emboss-6.6.0+dfsg/configure-9110- cp $export_symbols $output_objdir/$soname.def;
##############################################
emboss-6.6.0+dfsg/configure-9136- # time. Moving up from 0x10000000 also allows more sbrk(2) space.
emboss-6.6.0+dfsg/configure:9137: archive_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib'
emboss-6.6.0+dfsg/configure:9138: archive_expsym_cmds='sed "s,^,_," $export_symbols >$output_objdir/$soname.expsym~$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--retain-symbols-file,$output_objdir/$soname.expsym ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib'
emboss-6.6.0+dfsg/configure-9139- ;;
##############################################
emboss-6.6.0+dfsg/configure-9154- pgcc*) # Portland Group C compiler
emboss-6.6.0+dfsg/configure:9155: whole_archive_flag_spec='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; func_echo_all \"$new_convenience\"` ${wl}--no-whole-archive'
emboss-6.6.0+dfsg/configure-9156- tmp_addflag=' $pic_flag'
##############################################
emboss-6.6.0+dfsg/configure-9159- # Portland Group f77 and f90 compilers
emboss-6.6.0+dfsg/configure:9160: whole_archive_flag_spec='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; func_echo_all \"$new_convenience\"` ${wl}--no-whole-archive'
emboss-6.6.0+dfsg/configure-9161- tmp_addflag=' $pic_flag -Mnomain' ;;
##############################################
emboss-6.6.0+dfsg/configure-9174- nvcc*) # Cuda Compiler Driver 2.2
emboss-6.6.0+dfsg/configure:9175: whole_archive_flag_spec='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; func_echo_all \"$new_convenience\"` ${wl}--no-whole-archive'
emboss-6.6.0+dfsg/configure-9176- compiler_needs_object=yes
##############################################
emboss-6.6.0+dfsg/configure-9178- esac
emboss-6.6.0+dfsg/configure:9179: case `$CC -V 2>&1 | sed 5q` in
emboss-6.6.0+dfsg/configure-9180- *Sun\ C*) # Sun C 5.9
emboss-6.6.0+dfsg/configure:9181: whole_archive_flag_spec='${wl}--whole-archive`new_convenience=; for conv in $convenience\"\"; do test -z \"$conv\" || new_convenience=\"$new_convenience,$conv\"; done; func_echo_all \"$new_convenience\"` ${wl}--no-whole-archive'
emboss-6.6.0+dfsg/configure-9182- compiler_needs_object=yes
##############################################
emboss-6.6.0+dfsg/configure-9246- sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX*)
emboss-6.6.0+dfsg/configure:9247: case `$LD -v 2>&1` in
emboss-6.6.0+dfsg/configure-9248- *\ [01].* | *\ 2.[0-9].* | *\ 2.1[0-5].*)
##############################################
emboss-6.6.0+dfsg/configure-9369- # below for broken collect2 doesn't work under 4.3+
emboss-6.6.0+dfsg/configure:9370: collect2name=`${CC} -print-prog-name=collect2`
emboss-6.6.0+dfsg/configure-9371- if test -f "$collect2name" &&
##############################################
emboss-6.6.0+dfsg/configure-9442- }'
emboss-6.6.0+dfsg/configure:9443: lt_cv_aix_libpath_=`dump -H conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
emboss-6.6.0+dfsg/configure-9444- # Check for a 64-bit object if we didn't find anything.
emboss-6.6.0+dfsg/configure-9445- if test -z "$lt_cv_aix_libpath_"; then
emboss-6.6.0+dfsg/configure:9446: lt_cv_aix_libpath_=`dump -HX64 conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
emboss-6.6.0+dfsg/configure-9447- fi
##############################################
emboss-6.6.0+dfsg/configure-9460- hardcode_libdir_flag_spec='${wl}-blibpath:$libdir:'"$aix_libpath"
emboss-6.6.0+dfsg/configure:9461: archive_expsym_cmds='$CC -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags `if test "x${allow_undefined_flag}" != "x"; then func_echo_all "${wl}${allow_undefined_flag}"; else :; fi` '"\${wl}$exp_sym_flag:\$export_symbols $shared_flag"
emboss-6.6.0+dfsg/configure-9462- else
##############################################
emboss-6.6.0+dfsg/configure-9495- }'
emboss-6.6.0+dfsg/configure:9496: lt_cv_aix_libpath_=`dump -H conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
emboss-6.6.0+dfsg/configure-9497- # Check for a 64-bit object if we didn't find anything.
emboss-6.6.0+dfsg/configure-9498- if test -z "$lt_cv_aix_libpath_"; then
emboss-6.6.0+dfsg/configure:9499: lt_cv_aix_libpath_=`dump -HX64 conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
emboss-6.6.0+dfsg/configure-9500- fi
##############################################
emboss-6.6.0+dfsg/configure-9568- archive_cmds='$CC -o $output_objdir/$soname $libobjs $compiler_flags $deplibs -Wl,-dll~linknames='
emboss-6.6.0+dfsg/configure:9569: archive_expsym_cmds='if test "x`$SED 1q $export_symbols`" = xEXPORTS; then
emboss-6.6.0+dfsg/configure-9570- sed -n -e 's/\\\\\\\(.*\\\\\\\)/-link\\\ -EXPORT:\\\\\\\1/' -e '1\\\!p' < $export_symbols > $output_objdir/$soname.exp;
##############################################
emboss-6.6.0+dfsg/configure-9605- # FIXME: Setting linknames here is a bad hack.
emboss-6.6.0+dfsg/configure:9606: archive_cmds='$CC -o $lib $libobjs $compiler_flags `func_echo_all "$deplibs" | $SED '\''s/ -lc$//'\''` -link -dll~linknames='
emboss-6.6.0+dfsg/configure-9607- # The linker will automatically build a .lib file if we build a DLL.
##############################################
emboss-6.6.0+dfsg/configure-9623- if test "$lt_cv_ld_force_load" = "yes"; then
emboss-6.6.0+dfsg/configure:9624: whole_archive_flag_spec='`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience ${wl}-force_load,$conv\"; done; func_echo_all \"$new_convenience\"`'
emboss-6.6.0+dfsg/configure-9625-
##############################################
emboss-6.6.0+dfsg/configure-9803- if test "$GCC" = yes; then
emboss-6.6.0+dfsg/configure:9804: archive_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && func_echo_all "${wl}-set_version ${wl}$verstring"` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
emboss-6.6.0+dfsg/configure-9805- # Try to use the -exported_symbol ld option, if it does not
##############################################
emboss-6.6.0+dfsg/configure-9831- if test "$lt_cv_irix_exported_symbol" = yes; then
emboss-6.6.0+dfsg/configure:9832: archive_expsym_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && func_echo_all "${wl}-set_version ${wl}$verstring"` ${wl}-update_registry ${wl}${output_objdir}/so_locations ${wl}-exports_file ${wl}$export_symbols -o $lib'
emboss-6.6.0+dfsg/configure-9833- fi
emboss-6.6.0+dfsg/configure-9834- else
emboss-6.6.0+dfsg/configure:9835: archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags -soname $soname `test -n "$verstring" && func_echo_all "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib'
emboss-6.6.0+dfsg/configure:9836: archive_expsym_cmds='$CC -shared $libobjs $deplibs $compiler_flags -soname $soname `test -n "$verstring" && func_echo_all "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -exports_file $export_symbols -o $lib'
emboss-6.6.0+dfsg/configure-9837- fi
##############################################
emboss-6.6.0+dfsg/configure-9871- hardcode_direct_absolute=yes
emboss-6.6.0+dfsg/configure:9872: if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then
emboss-6.6.0+dfsg/configure-9873- archive_cmds='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags'
##############################################
emboss-6.6.0+dfsg/configure-9904- allow_undefined_flag=' ${wl}-expect_unresolved ${wl}\*'
emboss-6.6.0+dfsg/configure:9905: archive_cmds='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && func_echo_all "${wl}-set_version ${wl}$verstring"` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
emboss-6.6.0+dfsg/configure-9906- else
emboss-6.6.0+dfsg/configure-9907- allow_undefined_flag=' -expect_unresolved \*'
emboss-6.6.0+dfsg/configure:9908: archive_cmds='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags -soname $soname `test -n "$verstring" && func_echo_all "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib'
emboss-6.6.0+dfsg/configure-9909- fi
##############################################
emboss-6.6.0+dfsg/configure-9917- allow_undefined_flag=' ${wl}-expect_unresolved ${wl}\*'
emboss-6.6.0+dfsg/configure:9918: archive_cmds='$CC -shared${allow_undefined_flag} $pic_flag $libobjs $deplibs $compiler_flags ${wl}-msym ${wl}-soname ${wl}$soname `test -n "$verstring" && func_echo_all "${wl}-set_version ${wl}$verstring"` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
emboss-6.6.0+dfsg/configure-9919- hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir'
##############################################
emboss-6.6.0+dfsg/configure-9921- allow_undefined_flag=' -expect_unresolved \*'
emboss-6.6.0+dfsg/configure:9922: archive_cmds='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags -msym -soname $soname `test -n "$verstring" && func_echo_all "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib'
emboss-6.6.0+dfsg/configure:9923: archive_expsym_cmds='for i in `cat $export_symbols`; do printf "%s %s\\n" -exported_symbol "\$i" >> $lib.exp; done; printf "%s\\n" "-hidden">> $lib.exp~
emboss-6.6.0+dfsg/configure:9924: $CC -shared${allow_undefined_flag} ${wl}-input ${wl}$lib.exp $compiler_flags $libobjs $deplibs -soname $soname `test -n "$verstring" && $ECHO "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib~$RM $lib.exp'
emboss-6.6.0+dfsg/configure-9925-
##############################################
emboss-6.6.0+dfsg/configure-9940- else
emboss-6.6.0+dfsg/configure:9941: case `$CC -V 2>&1` in
emboss-6.6.0+dfsg/configure-9942- *"Compilers 5.0"*)
##############################################
emboss-6.6.0+dfsg/configure-10339- esac
emboss-6.6.0+dfsg/configure:10340: lt_search_path_spec=`$CC -print-search-dirs | awk $lt_awk_arg | $SED -e "s/^libraries://" -e $lt_sed_strip_eq`
emboss-6.6.0+dfsg/configure-10341- case $lt_search_path_spec in
##############################################
emboss-6.6.0+dfsg/configure-10346- # okay in the real world where ";" in dirpaths is itself problematic.
emboss-6.6.0+dfsg/configure:10347: lt_search_path_spec=`$ECHO "$lt_search_path_spec" | $SED 's/;/ /g'`
emboss-6.6.0+dfsg/configure-10348- ;;
emboss-6.6.0+dfsg/configure-10349- *)
emboss-6.6.0+dfsg/configure:10350: lt_search_path_spec=`$ECHO "$lt_search_path_spec" | $SED "s/$PATH_SEPARATOR/ /g"`
emboss-6.6.0+dfsg/configure-10351- ;;
##############################################
emboss-6.6.0+dfsg/configure-10355- lt_tmp_lt_search_path_spec=
emboss-6.6.0+dfsg/configure:10356: lt_multi_os_dir=`$CC $CPPFLAGS $CFLAGS $LDFLAGS -print-multi-os-directory 2>/dev/null`
emboss-6.6.0+dfsg/configure-10357- for lt_sys_path in $lt_search_path_spec; do
##############################################
emboss-6.6.0+dfsg/configure-10390- esac
emboss-6.6.0+dfsg/configure:10391: sys_lib_search_path_spec=`$ECHO "$lt_search_path_spec" | $lt_NL2SP`
emboss-6.6.0+dfsg/configure-10392-else
##############################################
emboss-6.6.0+dfsg/configure-10478- # Create ${libname}_ixlibrary.a entries in /sys/libs.
emboss-6.6.0+dfsg/configure:10479: finish_eval='for lib in `ls $libdir/*.ixlibrary 2>/dev/null`; do libname=`func_echo_all "$lib" | $SED '\''s%^.*/\([^/]*\)\.ixlibrary$%\1%'\''`; test $RM /sys/libs/${libname}_ixlibrary.a; $show "cd /sys/libs && $LN_S $lib ${libname}_ixlibrary.a"; cd /sys/libs && $LN_S $lib ${libname}_ixlibrary.a || exit 1; done'
emboss-6.6.0+dfsg/configure-10480- ;;
##############################################
emboss-6.6.0+dfsg/configure-10514- # DLL is installed to $(libdir)/../bin by postinstall_cmds
emboss-6.6.0+dfsg/configure:10515: postinstall_cmds='base_file=`basename \${file}`~
emboss-6.6.0+dfsg/configure:10516: dlpath=`$SHELL 2>&1 -c '\''. $dir/'\''\${base_file}'\''i; echo \$dlname'\''`~
emboss-6.6.0+dfsg/configure:10517: dldir=$destdir/`dirname \$dlpath`~
emboss-6.6.0+dfsg/configure-10518- test -d \$dldir || mkdir -p \$dldir~
##############################################
emboss-6.6.0+dfsg/configure-10523- fi'
emboss-6.6.0+dfsg/configure:10524: postuninstall_cmds='dldll=`$SHELL 2>&1 -c '\''. $file; echo \$dlname'\''`~
emboss-6.6.0+dfsg/configure-10525- dlpath=$dir/\$dldll~
##############################################
emboss-6.6.0+dfsg/configure-10531- # Cygwin DLLs use 'cyg' prefix rather than 'lib'
emboss-6.6.0+dfsg/configure:10532: soname_spec='`echo ${libname} | sed -e 's/^lib/cyg/'``echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext}'
emboss-6.6.0+dfsg/configure-10533-
##############################################
emboss-6.6.0+dfsg/configure-10537- # MinGW DLLs use traditional 'lib' prefix
emboss-6.6.0+dfsg/configure:10538: soname_spec='${libname}`echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext}'
emboss-6.6.0+dfsg/configure-10539- ;;
##############################################
emboss-6.6.0+dfsg/configure-10541- # pw32 DLLs use 'pw' prefix rather than 'lib'
emboss-6.6.0+dfsg/configure:10542: library_names_spec='`echo ${libname} | sed -e 's/^lib/pw/'``echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext}'
emboss-6.6.0+dfsg/configure-10543- ;;
##############################################
emboss-6.6.0+dfsg/configure-10550- libname_spec='$name'
emboss-6.6.0+dfsg/configure:10551: soname_spec='${libname}`echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext}'
emboss-6.6.0+dfsg/configure-10552- library_names_spec='${libname}.dll.lib'
##############################################
emboss-6.6.0+dfsg/configure-10562- # Let DOS variable expansion print the short 8.3 style file name.
emboss-6.6.0+dfsg/configure:10563: lt_path=`cd "$lt_path" 2>/dev/null && cmd //C "for %i in (".") do @echo %~si"`
emboss-6.6.0+dfsg/configure-10564- sys_lib_search_path_spec="$sys_lib_search_path_spec $lt_path"
##############################################
emboss-6.6.0+dfsg/configure-10567- # Convert to MSYS style.
emboss-6.6.0+dfsg/configure:10568: sys_lib_search_path_spec=`$ECHO "$sys_lib_search_path_spec" | sed -e 's|\\\\|/|g' -e 's| \\([a-zA-Z]\\):| /\\1|g' -e 's|^ ||'`
emboss-6.6.0+dfsg/configure-10569- ;;
##############################################
emboss-6.6.0+dfsg/configure-10573- # like /cygdrive/c/PROGRA~1:/cygdr...
emboss-6.6.0+dfsg/configure:10574: sys_lib_search_path_spec=`cygpath --path --unix "$LIB"`
emboss-6.6.0+dfsg/configure:10575: sys_lib_search_path_spec=`cygpath --path --dos "$sys_lib_search_path_spec" 2>/dev/null`
emboss-6.6.0+dfsg/configure:10576: sys_lib_search_path_spec=`cygpath --path --unix "$sys_lib_search_path_spec" | $SED -e "s/$PATH_SEPARATOR/ /g"`
emboss-6.6.0+dfsg/configure-10577- ;;
##############################################
emboss-6.6.0+dfsg/configure-10581- # It is most probably a Windows format PATH.
emboss-6.6.0+dfsg/configure:10582: sys_lib_search_path_spec=`$ECHO "$sys_lib_search_path_spec" | $SED -e 's/;/ /g'`
emboss-6.6.0+dfsg/configure-10583- else
emboss-6.6.0+dfsg/configure:10584: sys_lib_search_path_spec=`$ECHO "$sys_lib_search_path_spec" | $SED -e "s/$PATH_SEPARATOR/ /g"`
emboss-6.6.0+dfsg/configure-10585- fi
##############################################
emboss-6.6.0+dfsg/configure-10591- # DLL is installed to $(libdir)/../bin by postinstall_cmds
emboss-6.6.0+dfsg/configure:10592: postinstall_cmds='base_file=`basename \${file}`~
emboss-6.6.0+dfsg/configure:10593: dlpath=`$SHELL 2>&1 -c '\''. $dir/'\''\${base_file}'\''i; echo \$dlname'\''`~
emboss-6.6.0+dfsg/configure:10594: dldir=$destdir/`dirname \$dlpath`~
emboss-6.6.0+dfsg/configure-10595- test -d \$dldir || mkdir -p \$dldir~
emboss-6.6.0+dfsg/configure-10596- $install_prog $dir/$dlname \$dldir/$dlname'
emboss-6.6.0+dfsg/configure:10597: postuninstall_cmds='dldll=`$SHELL 2>&1 -c '\''. $file; echo \$dlname'\''`~
emboss-6.6.0+dfsg/configure-10598- dlpath=$dir/\$dldll~
##############################################
emboss-6.6.0+dfsg/configure-10605- # Assume MSVC wrapper
emboss-6.6.0+dfsg/configure:10606: library_names_spec='${libname}`echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext} $libname.lib'
emboss-6.6.0+dfsg/configure-10607- dynamic_linker='Win32 ld.exe'
##############################################
emboss-6.6.0+dfsg/configure-10622- shlibpath_var=DYLD_LIBRARY_PATH
emboss-6.6.0+dfsg/configure:10623: shrext_cmds='`test .$module = .yes && echo .so || echo .dylib`'
emboss-6.6.0+dfsg/configure-10624-
##############################################
emboss-6.6.0+dfsg/configure-10862- if test -f /etc/ld.so.conf; then
emboss-6.6.0+dfsg/configure:10863: lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;/^[ ]*hwcap[ ]/d;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;s/"//g;/^$/d' | tr '\n' ' '`
emboss-6.6.0+dfsg/configure-10864- sys_lib_dlsearch_path_spec="$sys_lib_dlsearch_path_spec $lt_ld_extra"
##############################################
emboss-6.6.0+dfsg/configure-10925- shlibpath_var=LD_LIBRARY_PATH
emboss-6.6.0+dfsg/configure:10926: if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then
emboss-6.6.0+dfsg/configure-10927- case $host_os in
##############################################
emboss-6.6.0+dfsg/configure-12074-done
emboss-6.6.0+dfsg/configure:12075:cc_basename=`$ECHO "$cc_temp" | $SED "s%.*/%%; s%^$host_alias-%%"`
emboss-6.6.0+dfsg/configure-12076-
##############################################
emboss-6.6.0+dfsg/configure-12106- # gcc leaves a trailing carriage return which upsets mingw
emboss-6.6.0+dfsg/configure:12107: ac_prog=`($CC -print-prog-name=ld) 2>&5 | tr -d '\015'` ;;
emboss-6.6.0+dfsg/configure-12108- *)
emboss-6.6.0+dfsg/configure:12109: ac_prog=`($CC -print-prog-name=ld) 2>&5` ;;
emboss-6.6.0+dfsg/configure-12110- esac
##############################################
emboss-6.6.0+dfsg/configure-12115- # Canonicalize the pathname of ld
emboss-6.6.0+dfsg/configure:12116: ac_prog=`$ECHO "$ac_prog"| $SED 's%\\\\%/%g'`
emboss-6.6.0+dfsg/configure-12117- while $ECHO "$ac_prog" | $GREP "$re_direlt" > /dev/null 2>&1; do
emboss-6.6.0+dfsg/configure:12118: ac_prog=`$ECHO $ac_prog| $SED "s%$re_direlt%/%"`
emboss-6.6.0+dfsg/configure-12119- done
##############################################
emboss-6.6.0+dfsg/configure-12150- # Break only if it was the GNU/non-GNU ld that we prefer.
emboss-6.6.0+dfsg/configure:12151: case `"$lt_cv_path_LD" -v 2>&1 </dev/null` in
emboss-6.6.0+dfsg/configure-12152- *GNU* | *'with BFD'*)
##############################################
emboss-6.6.0+dfsg/configure-12181- # I'd rather use --version here, but apparently some GNU lds only accept -v.
emboss-6.6.0+dfsg/configure:12182:case `$LD -v 2>&1 </dev/null` in
emboss-6.6.0+dfsg/configure-12183-*GNU* | *'with BFD'*)
##############################################
emboss-6.6.0+dfsg/configure-12215- # ancient GNU ld didn't support --whole-archive et. al.
emboss-6.6.0+dfsg/configure:12216: if eval "`$CC -print-prog-name=ld` --help 2>&1" |
emboss-6.6.0+dfsg/configure-12217- $GREP 'no-whole-archive' > /dev/null; then
##############################################
emboss-6.6.0+dfsg/configure-12299- # below for broken collect2 doesn't work under 4.3+
emboss-6.6.0+dfsg/configure:12300: collect2name=`${CC} -print-prog-name=collect2`
emboss-6.6.0+dfsg/configure-12301- if test -f "$collect2name" &&
##############################################
emboss-6.6.0+dfsg/configure-12372- }'
emboss-6.6.0+dfsg/configure:12373: lt_cv_aix_libpath__CXX=`dump -H conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
emboss-6.6.0+dfsg/configure-12374- # Check for a 64-bit object if we didn't find anything.
emboss-6.6.0+dfsg/configure-12375- if test -z "$lt_cv_aix_libpath__CXX"; then
emboss-6.6.0+dfsg/configure:12376: lt_cv_aix_libpath__CXX=`dump -HX64 conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
emboss-6.6.0+dfsg/configure-12377- fi
##############################################
emboss-6.6.0+dfsg/configure-12391-
emboss-6.6.0+dfsg/configure:12392: archive_expsym_cmds_CXX='$CC -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags `if test "x${allow_undefined_flag}" != "x"; then func_echo_all "${wl}${allow_undefined_flag}"; else :; fi` '"\${wl}$exp_sym_flag:\$export_symbols $shared_flag"
emboss-6.6.0+dfsg/configure-12393- else
##############################################
emboss-6.6.0+dfsg/configure-12426- }'
emboss-6.6.0+dfsg/configure:12427: lt_cv_aix_libpath__CXX=`dump -H conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
emboss-6.6.0+dfsg/configure-12428- # Check for a 64-bit object if we didn't find anything.
emboss-6.6.0+dfsg/configure-12429- if test -z "$lt_cv_aix_libpath__CXX"; then
emboss-6.6.0+dfsg/configure:12430: lt_cv_aix_libpath__CXX=`dump -HX64 conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
emboss-6.6.0+dfsg/configure-12431- fi
##############################################
emboss-6.6.0+dfsg/configure-12499- archive_cmds_CXX='$CC -o $output_objdir/$soname $libobjs $compiler_flags $deplibs -Wl,-dll~linknames='
emboss-6.6.0+dfsg/configure:12500: archive_expsym_cmds_CXX='if test "x`$SED 1q $export_symbols`" = xEXPORTS; then
emboss-6.6.0+dfsg/configure-12501- $SED -n -e 's/\\\\\\\(.*\\\\\\\)/-link\\\ -EXPORT:\\\\\\\1/' -e '1\\\!p' < $export_symbols > $output_objdir/$soname.exp;
##############################################
emboss-6.6.0+dfsg/configure-12540- # is EXPORTS), use it as is; otherwise, prepend...
emboss-6.6.0+dfsg/configure:12541: archive_expsym_cmds_CXX='if test "x`$SED 1q $export_symbols`" = xEXPORTS; then
emboss-6.6.0+dfsg/configure-12542- cp $export_symbols $output_objdir/$soname.def;
##############################################
emboss-6.6.0+dfsg/configure-12561- if test "$lt_cv_ld_force_load" = "yes"; then
emboss-6.6.0+dfsg/configure:12562: whole_archive_flag_spec_CXX='`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience ${wl}-force_load,$conv\"; done; func_echo_all \"$new_convenience\"`'
emboss-6.6.0+dfsg/configure-12563-
##############################################
emboss-6.6.0+dfsg/configure-12655- # dependencies.
emboss-6.6.0+dfsg/configure:12656: output_verbose_link_cmd='templist=`($CC -b $CFLAGS -v conftest.$objext 2>&1) | $EGREP "\-L"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; func_echo_all "$list"'
emboss-6.6.0+dfsg/configure-12657- ;;
##############################################
emboss-6.6.0+dfsg/configure-12720- # dependencies.
emboss-6.6.0+dfsg/configure:12721: output_verbose_link_cmd='templist=`($CC -b $CFLAGS -v conftest.$objext 2>&1) | $GREP "\-L"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; func_echo_all "$list"'
emboss-6.6.0+dfsg/configure-12722- ;;
##############################################
emboss-6.6.0+dfsg/configure-12756- # time. Moving up from 0x10000000 also allows more sbrk(2) space.
emboss-6.6.0+dfsg/configure:12757: archive_cmds_CXX='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib'
emboss-6.6.0+dfsg/configure:12758: archive_expsym_cmds_CXX='sed "s,^,_," $export_symbols >$output_objdir/$soname.expsym~$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--retain-symbols-file,$output_objdir/$soname.expsym ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib'
emboss-6.6.0+dfsg/configure-12759- ;;
##############################################
emboss-6.6.0+dfsg/configure-12763- # SGI C++
emboss-6.6.0+dfsg/configure:12764: archive_cmds_CXX='$CC -shared -all -multigot $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -soname $soname `test -n "$verstring" && func_echo_all "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib'
emboss-6.6.0+dfsg/configure-12765-
##############################################
emboss-6.6.0+dfsg/configure-12774- if test "$with_gnu_ld" = no; then
emboss-6.6.0+dfsg/configure:12775: archive_cmds_CXX='$CC -shared $pic_flag -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && func_echo_all "${wl}-set_version ${wl}$verstring"` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
emboss-6.6.0+dfsg/configure-12776- else
emboss-6.6.0+dfsg/configure:12777: archive_cmds_CXX='$CC -shared $pic_flag -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && func_echo_all "${wl}-set_version ${wl}$verstring"` -o $lib'
emboss-6.6.0+dfsg/configure-12778- fi
##############################################
emboss-6.6.0+dfsg/configure-12795- # to its proper name (with version) after linking.
emboss-6.6.0+dfsg/configure:12796: archive_cmds_CXX='tempext=`echo $shared_ext | $SED -e '\''s/\([^()0-9A-Za-z{}]\)/\\\\\1/g'\''`; templib=`echo $lib | $SED -e "s/\${tempext}\..*/.so/"`; $CC $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags --soname $soname -o \$templib; mv \$templib $lib'
emboss-6.6.0+dfsg/configure:12797: archive_expsym_cmds_CXX='tempext=`echo $shared_ext | $SED -e '\''s/\([^()0-9A-Za-z{}]\)/\\\\\1/g'\''`; templib=`echo $lib | $SED -e "s/\${tempext}\..*/.so/"`; $CC $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags --soname $soname -o \$templib ${wl}-retain-symbols-file,$export_symbols; mv \$templib $lib'
emboss-6.6.0+dfsg/configure-12798- # Commands to make compiler produce verbose output that lists
##############################################
emboss-6.6.0+dfsg/configure-12805- # dependencies.
emboss-6.6.0+dfsg/configure:12806: output_verbose_link_cmd='templist=`$CC $CFLAGS -v conftest.$objext -o libconftest$shared_ext 2>&1 | $GREP "ld"`; rm -f libconftest$shared_ext; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; func_echo_all "$list"'
emboss-6.6.0+dfsg/configure-12807-
##############################################
emboss-6.6.0+dfsg/configure-12820- # earlier do not add the objects themselves.
emboss-6.6.0+dfsg/configure:12821: case `$CC -V 2>&1` in
emboss-6.6.0+dfsg/configure-12822- *"Version 7."*)
##############################################
emboss-6.6.0+dfsg/configure-12841- # Portland Group C++ compiler
emboss-6.6.0+dfsg/configure:12842: case `$CC -V` in
emboss-6.6.0+dfsg/configure-12843- *pgCC\ [1-5].* | *pgcpp\ [1-5].*)
##############################################
emboss-6.6.0+dfsg/configure-12846- $CC --prelink_objects --instantiation_dir $tpldir $objs $libobjs $compile_deplibs~
emboss-6.6.0+dfsg/configure:12847: compile_command="$compile_command `find $tpldir -name \*.o | sort | $NL2SP`"'
emboss-6.6.0+dfsg/configure-12848- old_archive_cmds_CXX='tpldir=Template.dir~
##############################################
emboss-6.6.0+dfsg/configure-12850- $CC --prelink_objects --instantiation_dir $tpldir $oldobjs$old_deplibs~
emboss-6.6.0+dfsg/configure:12851: $AR $AR_FLAGS $oldlib$oldobjs$old_deplibs `find $tpldir -name \*.o | sort | $NL2SP`~
emboss-6.6.0+dfsg/configure-12852- $RANLIB $oldlib'
##############################################
emboss-6.6.0+dfsg/configure-12855- $CC --prelink_objects --instantiation_dir $tpldir $predep_objects $libobjs $deplibs $convenience $postdep_objects~
emboss-6.6.0+dfsg/configure:12856: $CC -shared $pic_flag $predep_objects $libobjs $deplibs `find $tpldir -name \*.o | sort | $NL2SP` $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname -o $lib'
emboss-6.6.0+dfsg/configure-12857- archive_expsym_cmds_CXX='tpldir=Template.dir~
##############################################
emboss-6.6.0+dfsg/configure-12859- $CC --prelink_objects --instantiation_dir $tpldir $predep_objects $libobjs $deplibs $convenience $postdep_objects~
emboss-6.6.0+dfsg/configure:12860: $CC -shared $pic_flag $predep_objects $libobjs $deplibs `find $tpldir -name \*.o | sort | $NL2SP` $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname ${wl}-retain-symbols-file ${wl}$export_symbols -o $lib'
emboss-6.6.0+dfsg/configure-12861- ;;
##############################################
emboss-6.6.0+dfsg/configure-12869- export_dynamic_flag_spec_CXX='${wl}--export-dynamic'
emboss-6.6.0+dfsg/configure:12870: whole_archive_flag_spec_CXX='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; func_echo_all \"$new_convenience\"` ${wl}--no-whole-archive'
emboss-6.6.0+dfsg/configure-12871- ;;
##############################################
emboss-6.6.0+dfsg/configure-12888- # dependencies.
emboss-6.6.0+dfsg/configure:12889: output_verbose_link_cmd='templist=`$CC -shared $CFLAGS -v conftest.$objext 2>&1 | $GREP "ld"`; templist=`func_echo_all "$templist" | $SED "s/\(^.*ld.*\)\( .*ld .*$\)/\1/"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; func_echo_all "X$list" | $Xsed'
emboss-6.6.0+dfsg/configure-12890- ;;
##############################################
emboss-6.6.0+dfsg/configure-12903- *)
emboss-6.6.0+dfsg/configure:12904: case `$CC -V 2>&1 | sed 5q` in
emboss-6.6.0+dfsg/configure-12905- *Sun\ C*)
##############################################
emboss-6.6.0+dfsg/configure-12910- hardcode_libdir_flag_spec_CXX='-R$libdir'
emboss-6.6.0+dfsg/configure:12911: whole_archive_flag_spec_CXX='${wl}--whole-archive`new_convenience=; for conv in $convenience\"\"; do test -z \"$conv\" || new_convenience=\"$new_convenience,$conv\"; done; func_echo_all \"$new_convenience\"` ${wl}--no-whole-archive'
emboss-6.6.0+dfsg/configure-12912- compiler_needs_object_CXX=yes
##############################################
emboss-6.6.0+dfsg/configure-12980- hardcode_libdir_flag_spec_CXX='${wl}-rpath,$libdir'
emboss-6.6.0+dfsg/configure:12981: if test -z "`echo __ELF__ | $CC -E - | grep __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then
emboss-6.6.0+dfsg/configure-12982- archive_expsym_cmds_CXX='$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-retain-symbols-file,$export_symbols -o $lib'
##############################################
emboss-6.6.0+dfsg/configure-12999- # to its proper name (with version) after linking.
emboss-6.6.0+dfsg/configure:13000: archive_cmds_CXX='tempext=`echo $shared_ext | $SED -e '\''s/\([^()0-9A-Za-z{}]\)/\\\\\1/g'\''`; templib=`echo "$lib" | $SED -e "s/\${tempext}\..*/.so/"`; $CC $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags --soname $soname -o \$templib; mv \$templib $lib'
emboss-6.6.0+dfsg/configure-13001-
##############################################
emboss-6.6.0+dfsg/configure-13020- allow_undefined_flag_CXX=' ${wl}-expect_unresolved ${wl}\*'
emboss-6.6.0+dfsg/configure:13021: archive_cmds_CXX='$CC -shared${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $soname `test -n "$verstring" && func_echo_all "${wl}-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib'
emboss-6.6.0+dfsg/configure-13022- hardcode_libdir_flag_spec_CXX='${wl}-rpath ${wl}$libdir'
##############################################
emboss-6.6.0+dfsg/configure-13025- allow_undefined_flag_CXX=' -expect_unresolved \*'
emboss-6.6.0+dfsg/configure:13026: archive_cmds_CXX='$CC -shared${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -msym -soname $soname `test -n "$verstring" && func_echo_all "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib'
emboss-6.6.0+dfsg/configure:13027: archive_expsym_cmds_CXX='for i in `cat $export_symbols`; do printf "%s %s\\n" -exported_symbol "\$i" >> $lib.exp; done~
emboss-6.6.0+dfsg/configure-13028- echo "-hidden">> $lib.exp~
emboss-6.6.0+dfsg/configure:13029: $CC -shared$allow_undefined_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -msym -soname $soname ${wl}-input ${wl}$lib.exp `test -n "$verstring" && $ECHO "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib~
emboss-6.6.0+dfsg/configure-13030- $RM $lib.exp'
##############################################
emboss-6.6.0+dfsg/configure-13044- # dependencies.
emboss-6.6.0+dfsg/configure:13045: output_verbose_link_cmd='templist=`$CC -shared $CFLAGS -v conftest.$objext 2>&1 | $GREP "ld" | $GREP -v "ld:"`; templist=`func_echo_all "$templist" | $SED "s/\(^.*ld.*\)\( .*ld.*$\)/\1/"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; func_echo_all "$list"'
emboss-6.6.0+dfsg/configure-13046- ;;
##############################################
emboss-6.6.0+dfsg/configure-13051- osf3*)
emboss-6.6.0+dfsg/configure:13052: archive_cmds_CXX='$CC -shared -nostdlib ${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && func_echo_all "${wl}-set_version ${wl}$verstring"` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
emboss-6.6.0+dfsg/configure-13053- ;;
emboss-6.6.0+dfsg/configure-13054- *)
emboss-6.6.0+dfsg/configure:13055: archive_cmds_CXX='$CC -shared $pic_flag -nostdlib ${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-msym ${wl}-soname ${wl}$soname `test -n "$verstring" && func_echo_all "${wl}-set_version ${wl}$verstring"` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
emboss-6.6.0+dfsg/configure-13056- ;;
##############################################
emboss-6.6.0+dfsg/configure-13298-
emboss-6.6.0+dfsg/configure:13299: for p in `eval "$output_verbose_link_cmd"`; do
emboss-6.6.0+dfsg/configure-13300- case ${prev}${p} in
##############################################
emboss-6.6.0+dfsg/configure-13395-linux*)
emboss-6.6.0+dfsg/configure:13396: case `$CC -V 2>&1 | sed 5q` in
emboss-6.6.0+dfsg/configure-13397- *Sun\ C*)
##############################################
emboss-6.6.0+dfsg/configure-13446-if test -n "${compiler_lib_search_path_CXX}"; then
emboss-6.6.0+dfsg/configure:13447: compiler_lib_search_dirs_CXX=`echo " ${compiler_lib_search_path_CXX}" | ${SED} -e 's! -L! !g' -e 's!^ !!'`
emboss-6.6.0+dfsg/configure-13448-fi
##############################################
emboss-6.6.0+dfsg/configure-13687- *)
emboss-6.6.0+dfsg/configure:13688: case `$CC -V 2>&1 | sed 5q` in
emboss-6.6.0+dfsg/configure-13689- *Sun\ C*)
##############################################
emboss-6.6.0+dfsg/configure-14041- if test "$hard_links" = no; then
emboss-6.6.0+dfsg/configure:14042: { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: \`$CC' does not support \`-c -o', so \`make -j' may be unsafe" >&5
emboss-6.6.0+dfsg/configure:14043:$as_echo "$as_me: WARNING: \`$CC' does not support \`-c -o', so \`make -j' may be unsafe" >&2;}
emboss-6.6.0+dfsg/configure-14044- need_locks=warn
##############################################
emboss-6.6.0+dfsg/configure-14315- # Create ${libname}_ixlibrary.a entries in /sys/libs.
emboss-6.6.0+dfsg/configure:14316: finish_eval='for lib in `ls $libdir/*.ixlibrary 2>/dev/null`; do libname=`func_echo_all "$lib" | $SED '\''s%^.*/\([^/]*\)\.ixlibrary$%\1%'\''`; test $RM /sys/libs/${libname}_ixlibrary.a; $show "cd /sys/libs && $LN_S $lib ${libname}_ixlibrary.a"; cd /sys/libs && $LN_S $lib ${libname}_ixlibrary.a || exit 1; done'
emboss-6.6.0+dfsg/configure-14317- ;;
##############################################
emboss-6.6.0+dfsg/configure-14351- # DLL is installed to $(libdir)/../bin by postinstall_cmds
emboss-6.6.0+dfsg/configure:14352: postinstall_cmds='base_file=`basename \${file}`~
emboss-6.6.0+dfsg/configure:14353: dlpath=`$SHELL 2>&1 -c '\''. $dir/'\''\${base_file}'\''i; echo \$dlname'\''`~
emboss-6.6.0+dfsg/configure:14354: dldir=$destdir/`dirname \$dlpath`~
emboss-6.6.0+dfsg/configure-14355- test -d \$dldir || mkdir -p \$dldir~
##############################################
emboss-6.6.0+dfsg/configure-14360- fi'
emboss-6.6.0+dfsg/configure:14361: postuninstall_cmds='dldll=`$SHELL 2>&1 -c '\''. $file; echo \$dlname'\''`~
emboss-6.6.0+dfsg/configure-14362- dlpath=$dir/\$dldll~
##############################################
emboss-6.6.0+dfsg/configure-14368- # Cygwin DLLs use 'cyg' prefix rather than 'lib'
emboss-6.6.0+dfsg/configure:14369: soname_spec='`echo ${libname} | sed -e 's/^lib/cyg/'``echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext}'
emboss-6.6.0+dfsg/configure-14370-
##############################################
emboss-6.6.0+dfsg/configure-14373- # MinGW DLLs use traditional 'lib' prefix
emboss-6.6.0+dfsg/configure:14374: soname_spec='${libname}`echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext}'
emboss-6.6.0+dfsg/configure-14375- ;;
##############################################
emboss-6.6.0+dfsg/configure-14377- # pw32 DLLs use 'pw' prefix rather than 'lib'
emboss-6.6.0+dfsg/configure:14378: library_names_spec='`echo ${libname} | sed -e 's/^lib/pw/'``echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext}'
emboss-6.6.0+dfsg/configure-14379- ;;
##############################################
emboss-6.6.0+dfsg/configure-14386- libname_spec='$name'
emboss-6.6.0+dfsg/configure:14387: soname_spec='${libname}`echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext}'
emboss-6.6.0+dfsg/configure-14388- library_names_spec='${libname}.dll.lib'
##############################################
emboss-6.6.0+dfsg/configure-14398- # Let DOS variable expansion print the short 8.3 style file name.
emboss-6.6.0+dfsg/configure:14399: lt_path=`cd "$lt_path" 2>/dev/null && cmd //C "for %i in (".") do @echo %~si"`
emboss-6.6.0+dfsg/configure-14400- sys_lib_search_path_spec="$sys_lib_search_path_spec $lt_path"
##############################################
emboss-6.6.0+dfsg/configure-14403- # Convert to MSYS style.
emboss-6.6.0+dfsg/configure:14404: sys_lib_search_path_spec=`$ECHO "$sys_lib_search_path_spec" | sed -e 's|\\\\|/|g' -e 's| \\([a-zA-Z]\\):| /\\1|g' -e 's|^ ||'`
emboss-6.6.0+dfsg/configure-14405- ;;
##############################################
emboss-6.6.0+dfsg/configure-14409- # like /cygdrive/c/PROGRA~1:/cygdr...
emboss-6.6.0+dfsg/configure:14410: sys_lib_search_path_spec=`cygpath --path --unix "$LIB"`
emboss-6.6.0+dfsg/configure:14411: sys_lib_search_path_spec=`cygpath --path --dos "$sys_lib_search_path_spec" 2>/dev/null`
emboss-6.6.0+dfsg/configure:14412: sys_lib_search_path_spec=`cygpath --path --unix "$sys_lib_search_path_spec" | $SED -e "s/$PATH_SEPARATOR/ /g"`
emboss-6.6.0+dfsg/configure-14413- ;;
##############################################
emboss-6.6.0+dfsg/configure-14417- # It is most probably a Windows format PATH.
emboss-6.6.0+dfsg/configure:14418: sys_lib_search_path_spec=`$ECHO "$sys_lib_search_path_spec" | $SED -e 's/;/ /g'`
emboss-6.6.0+dfsg/configure-14419- else
emboss-6.6.0+dfsg/configure:14420: sys_lib_search_path_spec=`$ECHO "$sys_lib_search_path_spec" | $SED -e "s/$PATH_SEPARATOR/ /g"`
emboss-6.6.0+dfsg/configure-14421- fi
##############################################
emboss-6.6.0+dfsg/configure-14427- # DLL is installed to $(libdir)/../bin by postinstall_cmds
emboss-6.6.0+dfsg/configure:14428: postinstall_cmds='base_file=`basename \${file}`~
emboss-6.6.0+dfsg/configure:14429: dlpath=`$SHELL 2>&1 -c '\''. $dir/'\''\${base_file}'\''i; echo \$dlname'\''`~
emboss-6.6.0+dfsg/configure:14430: dldir=$destdir/`dirname \$dlpath`~
emboss-6.6.0+dfsg/configure-14431- test -d \$dldir || mkdir -p \$dldir~
emboss-6.6.0+dfsg/configure-14432- $install_prog $dir/$dlname \$dldir/$dlname'
emboss-6.6.0+dfsg/configure:14433: postuninstall_cmds='dldll=`$SHELL 2>&1 -c '\''. $file; echo \$dlname'\''`~
emboss-6.6.0+dfsg/configure-14434- dlpath=$dir/\$dldll~
##############################################
emboss-6.6.0+dfsg/configure-14441- # Assume MSVC wrapper
emboss-6.6.0+dfsg/configure:14442: library_names_spec='${libname}`echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext} $libname.lib'
emboss-6.6.0+dfsg/configure-14443- dynamic_linker='Win32 ld.exe'
##############################################
emboss-6.6.0+dfsg/configure-14458- shlibpath_var=DYLD_LIBRARY_PATH
emboss-6.6.0+dfsg/configure:14459: shrext_cmds='`test .$module = .yes && echo .so || echo .dylib`'
emboss-6.6.0+dfsg/configure-14460-
##############################################
emboss-6.6.0+dfsg/configure-14697- if test -f /etc/ld.so.conf; then
emboss-6.6.0+dfsg/configure:14698: lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;/^[ ]*hwcap[ ]/d;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;s/"//g;/^$/d' | tr '\n' ' '`
emboss-6.6.0+dfsg/configure-14699- sys_lib_dlsearch_path_spec="$sys_lib_dlsearch_path_spec $lt_ld_extra"
##############################################
emboss-6.6.0+dfsg/configure-14760- shlibpath_var=LD_LIBRARY_PATH
emboss-6.6.0+dfsg/configure:14761: if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then
emboss-6.6.0+dfsg/configure-14762- case $host_os in
##############################################
emboss-6.6.0+dfsg/configure-15829- for ac_var in incroot usrlibdir libdir; do
emboss-6.6.0+dfsg/configure:15830: eval "ac_im_$ac_var=\`\${MAKE-make} $ac_var 2>/dev/null | sed -n 's/^$ac_var=//p'\`"
emboss-6.6.0+dfsg/configure-15831- done
##############################################
emboss-6.6.0+dfsg/configure-15939- LIBS=$ac_save_LIBS
emboss-6.6.0+dfsg/configure:15940:for ac_dir in `$as_echo "$ac_x_includes $ac_x_header_dirs" | sed s/include/lib/g`
emboss-6.6.0+dfsg/configure-15941-do
##############################################
emboss-6.6.0+dfsg/configure-16479-for ac_hdr in dirent.h sys/ndir.h sys/dir.h ndir.h; do
emboss-6.6.0+dfsg/configure:16480: as_ac_Header=`$as_echo "ac_cv_header_dirent_$ac_hdr" | $as_tr_sh`
emboss-6.6.0+dfsg/configure-16481-{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_hdr that defines DIR" >&5
##############################################
emboss-6.6.0+dfsg/configure-16511- cat >>confdefs.h <<_ACEOF
emboss-6.6.0+dfsg/configure:16512:#define `$as_echo "HAVE_$ac_hdr" | $as_tr_cpp` 1
emboss-6.6.0+dfsg/configure-16513-_ACEOF
##############################################
emboss-6.6.0+dfsg/configure-16750-do :
emboss-6.6.0+dfsg/configure:16751: as_ac_Header=`$as_echo "ac_cv_header_$ac_header" | $as_tr_sh`
emboss-6.6.0+dfsg/configure-16752-ac_fn_c_check_header_mongrel "$LINENO" "$ac_header" "$as_ac_Header" "$ac_includes_default"
##############################################
emboss-6.6.0+dfsg/configure-16754- cat >>confdefs.h <<_ACEOF
emboss-6.6.0+dfsg/configure:16755:#define `$as_echo "HAVE_$ac_header" | $as_tr_cpp` 1
emboss-6.6.0+dfsg/configure-16756-_ACEOF
##############################################
emboss-6.6.0+dfsg/configure-17273-do :
emboss-6.6.0+dfsg/configure:17274: as_ac_var=`$as_echo "ac_cv_func_$ac_func" | $as_tr_sh`
emboss-6.6.0+dfsg/configure-17275-ac_fn_c_check_func "$LINENO" "$ac_func" "$as_ac_var"
##############################################
emboss-6.6.0+dfsg/configure-17277- cat >>confdefs.h <<_ACEOF
emboss-6.6.0+dfsg/configure:17278:#define `$as_echo "HAVE_$ac_func" | $as_tr_cpp` 1
emboss-6.6.0+dfsg/configure-17279-_ACEOF
##############################################
emboss-6.6.0+dfsg/configure-18678- test $ac_status = 0; }; then
emboss-6.6.0+dfsg/configure:18679: pkg_cv_AXIS2C_CFLAGS=`$PKG_CONFIG --cflags "axis2c" 2>/dev/null`
emboss-6.6.0+dfsg/configure-18680-else
##############################################
emboss-6.6.0+dfsg/configure-18694- test $ac_status = 0; }; then
emboss-6.6.0+dfsg/configure:18695: pkg_cv_AXIS2C_LIBS=`$PKG_CONFIG --libs "axis2c" 2>/dev/null`
emboss-6.6.0+dfsg/configure-18696-else
##############################################
emboss-6.6.0+dfsg/configure-18714- if test $_pkg_short_errors_supported = yes; then
emboss-6.6.0+dfsg/configure:18715: AXIS2C_PKG_ERRORS=`$PKG_CONFIG --short-errors --print-errors "axis2c" 2>&1`
emboss-6.6.0+dfsg/configure-18716- else
emboss-6.6.0+dfsg/configure:18717: AXIS2C_PKG_ERRORS=`$PKG_CONFIG --print-errors "axis2c" 2>&1`
emboss-6.6.0+dfsg/configure-18718- fi
##############################################
emboss-6.6.0+dfsg/configure-19209-
emboss-6.6.0+dfsg/configure:19210: MYSQL_CFLAGS="`${MYSQL_CONFIG} --cflags`"
emboss-6.6.0+dfsg/configure:19211: MYSQL_CPPFLAGS="`${MYSQL_CONFIG} --include`"
emboss-6.6.0+dfsg/configure:19212: MYSQL_LDFLAGS="`${MYSQL_CONFIG} --libs`"
emboss-6.6.0+dfsg/configure-19213-
emboss-6.6.0+dfsg/configure:19214: MYSQL_VERSION=`${MYSQL_CONFIG} --version`
emboss-6.6.0+dfsg/configure-19215-
##############################################
emboss-6.6.0+dfsg/configure-19282-
emboss-6.6.0+dfsg/configure:19283: mysql_version_req_major=`expr ${mysql_version_req} : '\([0-9]*\)'`
emboss-6.6.0+dfsg/configure:19284: mysql_version_req_minor=`expr ${mysql_version_req} : '[0-9]*\.\([0-9]*\)'`
emboss-6.6.0+dfsg/configure:19285: mysql_version_req_micro=`expr ${mysql_version_req} : '[0-9]*\.[0-9]*\.\([0-9]*\)'`
emboss-6.6.0+dfsg/configure-19286-
##############################################
emboss-6.6.0+dfsg/configure-19295-
emboss-6.6.0+dfsg/configure:19296: mysql_version_major=`expr ${MYSQL_VERSION} : '\([0-9]*\)'`
emboss-6.6.0+dfsg/configure:19297: mysql_version_minor=`expr ${MYSQL_VERSION} : '[0-9]*\.\([0-9]*\)'`
emboss-6.6.0+dfsg/configure:19298: mysql_version_micro=`expr ${MYSQL_VERSION} : '[0-9]*\.[0-9]*\.\([0-9]*\)'`
emboss-6.6.0+dfsg/configure-19299-
##############################################
emboss-6.6.0+dfsg/configure-19307-
emboss-6.6.0+dfsg/configure:19308: mysql_version_check=`expr ${mysql_version_number} \>\= ${mysql_version_req_number}`
emboss-6.6.0+dfsg/configure-19309-
##############################################
emboss-6.6.0+dfsg/configure-19403-
emboss-6.6.0+dfsg/configure:19404: POSTGRESQL_CFLAGS="-I`${POSTGRESQL_CONFIG} --includedir`"
emboss-6.6.0+dfsg/configure:19405: POSTGRESQL_CPPFLAGS="-I`${POSTGRESQL_CONFIG} --includedir`"
emboss-6.6.0+dfsg/configure:19406: POSTGRESQL_LDFLAGS="-L`${POSTGRESQL_CONFIG} --libdir` -lpq"
emboss-6.6.0+dfsg/configure-19407-
emboss-6.6.0+dfsg/configure:19408: POSTGRESQL_VERSION=`${POSTGRESQL_CONFIG} --version | sed -e 's#PostgreSQL ##'`
emboss-6.6.0+dfsg/configure-19409-
##############################################
emboss-6.6.0+dfsg/configure-19476-
emboss-6.6.0+dfsg/configure:19477: postgresql_version_req_major=`expr ${postgresql_version_req} : '\([0-9]*\)'`
emboss-6.6.0+dfsg/configure:19478: postgresql_version_req_minor=`expr ${postgresql_version_req} : '[0-9]*\.\([0-9]*\)'`
emboss-6.6.0+dfsg/configure:19479: postgresql_version_req_micro=`expr ${postgresql_version_req} : '[0-9]*\.[0-9]*\.\([0-9]*\)'`
emboss-6.6.0+dfsg/configure-19480-
##############################################
emboss-6.6.0+dfsg/configure-19489-
emboss-6.6.0+dfsg/configure:19490: postgresql_version_major=`expr ${POSTGRESQL_VERSION} : '\([0-9]*\)'`
emboss-6.6.0+dfsg/configure:19491: postgresql_version_minor=`expr ${POSTGRESQL_VERSION} : '[0-9]*\.\([0-9]*\)'`
emboss-6.6.0+dfsg/configure:19492: postgresql_version_micro=`expr ${POSTGRESQL_VERSION} : '[0-9]*\.[0-9]*\.\([0-9]*\)'`
emboss-6.6.0+dfsg/configure-19493-
##############################################
emboss-6.6.0+dfsg/configure-19501-
emboss-6.6.0+dfsg/configure:19502: postgresql_version_check=`expr ${postgresql_version_number} \>\= ${postgresql_version_req_number}`
emboss-6.6.0+dfsg/configure-19503-
##############################################
emboss-6.6.0+dfsg/configure-19978- ac_script='s/\$U\././;s/\.o$//;s/\.obj$//'
emboss-6.6.0+dfsg/configure:19979: ac_i=`$as_echo "$ac_i" | sed "$ac_script"`
emboss-6.6.0+dfsg/configure-19980- # 2. Prepend LIBOBJDIR. When used with automake>=1.10 LIBOBJDIR
##############################################
emboss-6.6.0+dfsg/configure-20130-if test -z "$BASH_VERSION$ZSH_VERSION" \
emboss-6.6.0+dfsg/configure:20131: && (test "X`print -r -- $as_echo`" = "X$as_echo") 2>/dev/null; then
emboss-6.6.0+dfsg/configure-20132- as_echo='print -r --'
emboss-6.6.0+dfsg/configure-20133- as_echo_n='print -rn --'
emboss-6.6.0+dfsg/configure:20134:elif (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
emboss-6.6.0+dfsg/configure-20135- as_echo='printf %s\n'
##############################################
emboss-6.6.0+dfsg/configure-20137-else
emboss-6.6.0+dfsg/configure:20138: if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then
emboss-6.6.0+dfsg/configure-20139- as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"'
##############################################
emboss-6.6.0+dfsg/configure-20147- expr "X$arg" : "X\\(.*\\)$as_nl";
emboss-6.6.0+dfsg/configure:20148: arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
emboss-6.6.0+dfsg/configure-20149- esac;
##############################################
emboss-6.6.0+dfsg/configure-20224-# ----------------------------------------
emboss-6.6.0+dfsg/configure:20225:# Output "`basename $0`: error: ERROR" to stderr. If LINENO and LOG_FD are
emboss-6.6.0+dfsg/configure-20226-# provided, also output the error to LOG_FD, referencing LINENO. Then exit the
##############################################
emboss-6.6.0+dfsg/configure-20296- {
emboss-6.6.0+dfsg/configure:20297: as_val=`expr "$@" || test $? -eq 1`
emboss-6.6.0+dfsg/configure-20298- }
##############################################
emboss-6.6.0+dfsg/configure-20400- case $as_dir in #(
emboss-6.6.0+dfsg/configure:20401: *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
emboss-6.6.0+dfsg/configure-20402- *) as_qdir=$as_dir;;
##############################################
emboss-6.6.0+dfsg/configure-20536-cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
emboss-6.6.0+dfsg/configure:20537:ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
emboss-6.6.0+dfsg/configure-20538-ac_cs_version="\\
##############################################
emboss-6.6.0+dfsg/configure-20561- --*=?*)
emboss-6.6.0+dfsg/configure:20562: ac_option=`expr "X$1" : 'X\([^=]*\)='`
emboss-6.6.0+dfsg/configure:20563: ac_optarg=`expr "X$1" : 'X[^=]*=\(.*\)'`
emboss-6.6.0+dfsg/configure-20564- ac_shift=:
##############################################
emboss-6.6.0+dfsg/configure-20566- --*=)
emboss-6.6.0+dfsg/configure:20567: ac_option=`expr "X$1" : 'X\([^=]*\)='`
emboss-6.6.0+dfsg/configure-20568- ac_optarg=
##############################################
emboss-6.6.0+dfsg/configure-20590- case $ac_optarg in
emboss-6.6.0+dfsg/configure:20591: *\'*) ac_optarg=`$as_echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"` ;;
emboss-6.6.0+dfsg/configure-20592- '') as_fn_error $? "missing file argument" ;;
##############################################
emboss-6.6.0+dfsg/configure-20598- case $ac_optarg in
emboss-6.6.0+dfsg/configure:20599: *\'*) ac_optarg=`$as_echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"` ;;
emboss-6.6.0+dfsg/configure-20600- esac
##############################################
emboss-6.6.0+dfsg/configure-20667-delay_variable_subst='$delay_variable_subst'
emboss-6.6.0+dfsg/configure:20668:macro_version='`$ECHO "$macro_version" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20669:macro_revision='`$ECHO "$macro_revision" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20670:enable_shared='`$ECHO "$enable_shared" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20671:enable_static='`$ECHO "$enable_static" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20672:pic_mode='`$ECHO "$pic_mode" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20673:enable_fast_install='`$ECHO "$enable_fast_install" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20674:SHELL='`$ECHO "$SHELL" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20675:ECHO='`$ECHO "$ECHO" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20676:PATH_SEPARATOR='`$ECHO "$PATH_SEPARATOR" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20677:host_alias='`$ECHO "$host_alias" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20678:host='`$ECHO "$host" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20679:host_os='`$ECHO "$host_os" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20680:build_alias='`$ECHO "$build_alias" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20681:build='`$ECHO "$build" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20682:build_os='`$ECHO "$build_os" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20683:SED='`$ECHO "$SED" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20684:Xsed='`$ECHO "$Xsed" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20685:GREP='`$ECHO "$GREP" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20686:EGREP='`$ECHO "$EGREP" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20687:FGREP='`$ECHO "$FGREP" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20688:LD='`$ECHO "$LD" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20689:NM='`$ECHO "$NM" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20690:LN_S='`$ECHO "$LN_S" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20691:max_cmd_len='`$ECHO "$max_cmd_len" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20692:ac_objext='`$ECHO "$ac_objext" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20693:exeext='`$ECHO "$exeext" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20694:lt_unset='`$ECHO "$lt_unset" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20695:lt_SP2NL='`$ECHO "$lt_SP2NL" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20696:lt_NL2SP='`$ECHO "$lt_NL2SP" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20697:lt_cv_to_host_file_cmd='`$ECHO "$lt_cv_to_host_file_cmd" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20698:lt_cv_to_tool_file_cmd='`$ECHO "$lt_cv_to_tool_file_cmd" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20699:reload_flag='`$ECHO "$reload_flag" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20700:reload_cmds='`$ECHO "$reload_cmds" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20701:OBJDUMP='`$ECHO "$OBJDUMP" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20702:deplibs_check_method='`$ECHO "$deplibs_check_method" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20703:file_magic_cmd='`$ECHO "$file_magic_cmd" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20704:file_magic_glob='`$ECHO "$file_magic_glob" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20705:want_nocaseglob='`$ECHO "$want_nocaseglob" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20706:DLLTOOL='`$ECHO "$DLLTOOL" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20707:sharedlib_from_linklib_cmd='`$ECHO "$sharedlib_from_linklib_cmd" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20708:AR='`$ECHO "$AR" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20709:AR_FLAGS='`$ECHO "$AR_FLAGS" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20710:archiver_list_spec='`$ECHO "$archiver_list_spec" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20711:STRIP='`$ECHO "$STRIP" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20712:RANLIB='`$ECHO "$RANLIB" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20713:old_postinstall_cmds='`$ECHO "$old_postinstall_cmds" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20714:old_postuninstall_cmds='`$ECHO "$old_postuninstall_cmds" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20715:old_archive_cmds='`$ECHO "$old_archive_cmds" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20716:lock_old_archive_extraction='`$ECHO "$lock_old_archive_extraction" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20717:CC='`$ECHO "$CC" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20718:CFLAGS='`$ECHO "$CFLAGS" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20719:compiler='`$ECHO "$compiler" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20720:GCC='`$ECHO "$GCC" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20721:lt_cv_sys_global_symbol_pipe='`$ECHO "$lt_cv_sys_global_symbol_pipe" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20722:lt_cv_sys_global_symbol_to_cdecl='`$ECHO "$lt_cv_sys_global_symbol_to_cdecl" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20723:lt_cv_sys_global_symbol_to_c_name_address='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20724:lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address_lib_prefix" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20725:nm_file_list_spec='`$ECHO "$nm_file_list_spec" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20726:lt_sysroot='`$ECHO "$lt_sysroot" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20727:objdir='`$ECHO "$objdir" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20728:MAGIC_CMD='`$ECHO "$MAGIC_CMD" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20729:lt_prog_compiler_no_builtin_flag='`$ECHO "$lt_prog_compiler_no_builtin_flag" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20730:lt_prog_compiler_pic='`$ECHO "$lt_prog_compiler_pic" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20731:lt_prog_compiler_wl='`$ECHO "$lt_prog_compiler_wl" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20732:lt_prog_compiler_static='`$ECHO "$lt_prog_compiler_static" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20733:lt_cv_prog_compiler_c_o='`$ECHO "$lt_cv_prog_compiler_c_o" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20734:need_locks='`$ECHO "$need_locks" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20735:MANIFEST_TOOL='`$ECHO "$MANIFEST_TOOL" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20736:DSYMUTIL='`$ECHO "$DSYMUTIL" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20737:NMEDIT='`$ECHO "$NMEDIT" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20738:LIPO='`$ECHO "$LIPO" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20739:OTOOL='`$ECHO "$OTOOL" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20740:OTOOL64='`$ECHO "$OTOOL64" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20741:libext='`$ECHO "$libext" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20742:shrext_cmds='`$ECHO "$shrext_cmds" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20743:extract_expsyms_cmds='`$ECHO "$extract_expsyms_cmds" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20744:archive_cmds_need_lc='`$ECHO "$archive_cmds_need_lc" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20745:enable_shared_with_static_runtimes='`$ECHO "$enable_shared_with_static_runtimes" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20746:export_dynamic_flag_spec='`$ECHO "$export_dynamic_flag_spec" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20747:whole_archive_flag_spec='`$ECHO "$whole_archive_flag_spec" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20748:compiler_needs_object='`$ECHO "$compiler_needs_object" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20749:old_archive_from_new_cmds='`$ECHO "$old_archive_from_new_cmds" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20750:old_archive_from_expsyms_cmds='`$ECHO "$old_archive_from_expsyms_cmds" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20751:archive_cmds='`$ECHO "$archive_cmds" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20752:archive_expsym_cmds='`$ECHO "$archive_expsym_cmds" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20753:module_cmds='`$ECHO "$module_cmds" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20754:module_expsym_cmds='`$ECHO "$module_expsym_cmds" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20755:with_gnu_ld='`$ECHO "$with_gnu_ld" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20756:allow_undefined_flag='`$ECHO "$allow_undefined_flag" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20757:no_undefined_flag='`$ECHO "$no_undefined_flag" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20758:hardcode_libdir_flag_spec='`$ECHO "$hardcode_libdir_flag_spec" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20759:hardcode_libdir_separator='`$ECHO "$hardcode_libdir_separator" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20760:hardcode_direct='`$ECHO "$hardcode_direct" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20761:hardcode_direct_absolute='`$ECHO "$hardcode_direct_absolute" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20762:hardcode_minus_L='`$ECHO "$hardcode_minus_L" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20763:hardcode_shlibpath_var='`$ECHO "$hardcode_shlibpath_var" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20764:hardcode_automatic='`$ECHO "$hardcode_automatic" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20765:inherit_rpath='`$ECHO "$inherit_rpath" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20766:link_all_deplibs='`$ECHO "$link_all_deplibs" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20767:always_export_symbols='`$ECHO "$always_export_symbols" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20768:export_symbols_cmds='`$ECHO "$export_symbols_cmds" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20769:exclude_expsyms='`$ECHO "$exclude_expsyms" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20770:include_expsyms='`$ECHO "$include_expsyms" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20771:prelink_cmds='`$ECHO "$prelink_cmds" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20772:postlink_cmds='`$ECHO "$postlink_cmds" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20773:file_list_spec='`$ECHO "$file_list_spec" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20774:variables_saved_for_relink='`$ECHO "$variables_saved_for_relink" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20775:need_lib_prefix='`$ECHO "$need_lib_prefix" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20776:need_version='`$ECHO "$need_version" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20777:version_type='`$ECHO "$version_type" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20778:runpath_var='`$ECHO "$runpath_var" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20779:shlibpath_var='`$ECHO "$shlibpath_var" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20780:shlibpath_overrides_runpath='`$ECHO "$shlibpath_overrides_runpath" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20781:libname_spec='`$ECHO "$libname_spec" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20782:library_names_spec='`$ECHO "$library_names_spec" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20783:soname_spec='`$ECHO "$soname_spec" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20784:install_override_mode='`$ECHO "$install_override_mode" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20785:postinstall_cmds='`$ECHO "$postinstall_cmds" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20786:postuninstall_cmds='`$ECHO "$postuninstall_cmds" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20787:finish_cmds='`$ECHO "$finish_cmds" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20788:finish_eval='`$ECHO "$finish_eval" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20789:hardcode_into_libs='`$ECHO "$hardcode_into_libs" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20790:sys_lib_search_path_spec='`$ECHO "$sys_lib_search_path_spec" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20791:sys_lib_dlsearch_path_spec='`$ECHO "$sys_lib_dlsearch_path_spec" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20792:hardcode_action='`$ECHO "$hardcode_action" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20793:enable_dlopen='`$ECHO "$enable_dlopen" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20794:enable_dlopen_self='`$ECHO "$enable_dlopen_self" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20795:enable_dlopen_self_static='`$ECHO "$enable_dlopen_self_static" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20796:old_striplib='`$ECHO "$old_striplib" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20797:striplib='`$ECHO "$striplib" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20798:compiler_lib_search_dirs='`$ECHO "$compiler_lib_search_dirs" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20799:predep_objects='`$ECHO "$predep_objects" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20800:postdep_objects='`$ECHO "$postdep_objects" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20801:predeps='`$ECHO "$predeps" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20802:postdeps='`$ECHO "$postdeps" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20803:compiler_lib_search_path='`$ECHO "$compiler_lib_search_path" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20804:LD_CXX='`$ECHO "$LD_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20805:reload_flag_CXX='`$ECHO "$reload_flag_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20806:reload_cmds_CXX='`$ECHO "$reload_cmds_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20807:old_archive_cmds_CXX='`$ECHO "$old_archive_cmds_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20808:compiler_CXX='`$ECHO "$compiler_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20809:GCC_CXX='`$ECHO "$GCC_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20810:lt_prog_compiler_no_builtin_flag_CXX='`$ECHO "$lt_prog_compiler_no_builtin_flag_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20811:lt_prog_compiler_pic_CXX='`$ECHO "$lt_prog_compiler_pic_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20812:lt_prog_compiler_wl_CXX='`$ECHO "$lt_prog_compiler_wl_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20813:lt_prog_compiler_static_CXX='`$ECHO "$lt_prog_compiler_static_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20814:lt_cv_prog_compiler_c_o_CXX='`$ECHO "$lt_cv_prog_compiler_c_o_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20815:archive_cmds_need_lc_CXX='`$ECHO "$archive_cmds_need_lc_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20816:enable_shared_with_static_runtimes_CXX='`$ECHO "$enable_shared_with_static_runtimes_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20817:export_dynamic_flag_spec_CXX='`$ECHO "$export_dynamic_flag_spec_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20818:whole_archive_flag_spec_CXX='`$ECHO "$whole_archive_flag_spec_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20819:compiler_needs_object_CXX='`$ECHO "$compiler_needs_object_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20820:old_archive_from_new_cmds_CXX='`$ECHO "$old_archive_from_new_cmds_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20821:old_archive_from_expsyms_cmds_CXX='`$ECHO "$old_archive_from_expsyms_cmds_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20822:archive_cmds_CXX='`$ECHO "$archive_cmds_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20823:archive_expsym_cmds_CXX='`$ECHO "$archive_expsym_cmds_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20824:module_cmds_CXX='`$ECHO "$module_cmds_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20825:module_expsym_cmds_CXX='`$ECHO "$module_expsym_cmds_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20826:with_gnu_ld_CXX='`$ECHO "$with_gnu_ld_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20827:allow_undefined_flag_CXX='`$ECHO "$allow_undefined_flag_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20828:no_undefined_flag_CXX='`$ECHO "$no_undefined_flag_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20829:hardcode_libdir_flag_spec_CXX='`$ECHO "$hardcode_libdir_flag_spec_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20830:hardcode_libdir_separator_CXX='`$ECHO "$hardcode_libdir_separator_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20831:hardcode_direct_CXX='`$ECHO "$hardcode_direct_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20832:hardcode_direct_absolute_CXX='`$ECHO "$hardcode_direct_absolute_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20833:hardcode_minus_L_CXX='`$ECHO "$hardcode_minus_L_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20834:hardcode_shlibpath_var_CXX='`$ECHO "$hardcode_shlibpath_var_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20835:hardcode_automatic_CXX='`$ECHO "$hardcode_automatic_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20836:inherit_rpath_CXX='`$ECHO "$inherit_rpath_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20837:link_all_deplibs_CXX='`$ECHO "$link_all_deplibs_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20838:always_export_symbols_CXX='`$ECHO "$always_export_symbols_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20839:export_symbols_cmds_CXX='`$ECHO "$export_symbols_cmds_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20840:exclude_expsyms_CXX='`$ECHO "$exclude_expsyms_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20841:include_expsyms_CXX='`$ECHO "$include_expsyms_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20842:prelink_cmds_CXX='`$ECHO "$prelink_cmds_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20843:postlink_cmds_CXX='`$ECHO "$postlink_cmds_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20844:file_list_spec_CXX='`$ECHO "$file_list_spec_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20845:hardcode_action_CXX='`$ECHO "$hardcode_action_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20846:compiler_lib_search_dirs_CXX='`$ECHO "$compiler_lib_search_dirs_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20847:predep_objects_CXX='`$ECHO "$predep_objects_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20848:postdep_objects_CXX='`$ECHO "$postdep_objects_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20849:predeps_CXX='`$ECHO "$predeps_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20850:postdeps_CXX='`$ECHO "$postdeps_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure:20851:compiler_lib_search_path_CXX='`$ECHO "$compiler_lib_search_path_CXX" | $SED "$delay_single_quote_subst"`'
emboss-6.6.0+dfsg/configure-20852-
##############################################
emboss-6.6.0+dfsg/configure-20961-compiler_lib_search_path_CXX; do
emboss-6.6.0+dfsg/configure:20962: case \`eval \\\\\$ECHO \\\\""\\\\\$\$var"\\\\"\` in
emboss-6.6.0+dfsg/configure-20963- *[\\\\\\\`\\"\\\$]*)
emboss-6.6.0+dfsg/configure:20964: eval "lt_\$var=\\\\\\"\\\`\\\$ECHO \\"\\\$\$var\\" | \\\$SED \\"\\\$sed_quote_subst\\"\\\`\\\\\\""
emboss-6.6.0+dfsg/configure-20965- ;;
##############################################
emboss-6.6.0+dfsg/configure-21002-postlink_cmds_CXX; do
emboss-6.6.0+dfsg/configure:21003: case \`eval \\\\\$ECHO \\\\""\\\\\$\$var"\\\\"\` in
emboss-6.6.0+dfsg/configure-21004- *[\\\\\\\`\\"\\\$]*)
emboss-6.6.0+dfsg/configure:21005: eval "lt_\$var=\\\\\\"\\\`\\\$ECHO \\"\\\$\$var\\" | \\\$SED -e \\"\\\$double_quote_subst\\" -e \\"\\\$sed_quote_subst\\" -e \\"\\\$delay_variable_subst\\"\\\`\\\\\\""
emboss-6.6.0+dfsg/configure-21006- ;;
##############################################
emboss-6.6.0+dfsg/configure-21155-fi
emboss-6.6.0+dfsg/configure:21156:ac_cs_awk_cr=`$AWK 'BEGIN { print "a\rb" }' </dev/null 2>/dev/null`
emboss-6.6.0+dfsg/configure-21157-if test "$ac_cs_awk_cr" = "a${ac_cr}b"; then
##############################################
emboss-6.6.0+dfsg/configure-21172- as_fn_error $? "could not make $CONFIG_STATUS" "$LINENO" 5
emboss-6.6.0+dfsg/configure:21173:ac_delim_num=`echo "$ac_subst_vars" | grep -c '^'`
emboss-6.6.0+dfsg/configure-21174-ac_delim='%!_!# '
##############################################
emboss-6.6.0+dfsg/configure-21178-
emboss-6.6.0+dfsg/configure:21179: ac_delim_n=`sed -n "s/.*$ac_delim\$/X/p" conf$$subs.awk | grep -c X`
emboss-6.6.0+dfsg/configure-21180- if test $ac_delim_n = $ac_delim_num; then
##############################################
emboss-6.6.0+dfsg/configure-21316-for ac_last_try in false false :; do
emboss-6.6.0+dfsg/configure:21317: ac_tt=`sed -n "/$ac_delim/p" confdefs.h`
emboss-6.6.0+dfsg/configure-21318- if test -z "$ac_tt"; then
##############################################
emboss-6.6.0+dfsg/configure-21448- esac
emboss-6.6.0+dfsg/configure:21449: case $ac_f in *\'*) ac_f=`$as_echo "$ac_f" | sed "s/'/'\\\\\\\\''/g"`;; esac
emboss-6.6.0+dfsg/configure-21450- as_fn_append ac_file_inputs " '$ac_f'"
##############################################
emboss-6.6.0+dfsg/configure-21507-*)
emboss-6.6.0+dfsg/configure:21508: ac_dir_suffix=/`$as_echo "$ac_dir" | sed 's|^\.[\\/]||'`
emboss-6.6.0+dfsg/configure-21509- # A ".." for each directory in $ac_dir_suffix.
emboss-6.6.0+dfsg/configure:21510: ac_top_builddir_sub=`$as_echo "$ac_dir_suffix" | sed 's|/[^\\/]*|/..|g;s|/||'`
emboss-6.6.0+dfsg/configure-21511- case $ac_top_builddir_sub in
##############################################
emboss-6.6.0+dfsg/configure-21568-/@mandir@/p'
emboss-6.6.0+dfsg/configure:21569:case `eval "sed -n \"\$ac_sed_dataroot\" $ac_file_inputs"` in
emboss-6.6.0+dfsg/configure-21570-*datarootdir*) ac_datarootdir_seen=yes;;
##############################################
emboss-6.6.0+dfsg/configure-21585-
emboss-6.6.0+dfsg/configure:21586:# Neutralize VPATH when `$srcdir' = `.'.
emboss-6.6.0+dfsg/configure-21587-# Shell code in configure.ac might set extrasub.
##############################################
emboss-6.6.0+dfsg/configure-21613-test -z "$ac_datarootdir_hack$ac_datarootdir_seen" &&
emboss-6.6.0+dfsg/configure:21614: { ac_out=`sed -n '/\${datarootdir}/p' "$ac_tmp/out"`; test -n "$ac_out"; } &&
emboss-6.6.0+dfsg/configure-21615- { ac_out=`sed -n '/^[ ]*datarootdir[ ]*:*=/p' \
##############################################
emboss-6.6.0+dfsg/configure-21659- * )
emboss-6.6.0+dfsg/configure:21660: _am_stamp_count=`expr $_am_stamp_count + 1` ;;
emboss-6.6.0+dfsg/configure-21661- esac
##############################################
emboss-6.6.0+dfsg/configure-21706- # Strip MF so we end up with the name of the file.
emboss-6.6.0+dfsg/configure:21707: mf=`echo "$mf" | sed -e 's/:.*$//'`
emboss-6.6.0+dfsg/configure-21708- # Check whether this is an Automake generated Makefile or not.
##############################################
emboss-6.6.0+dfsg/configure-21743- # from the Makefile without running 'make'.
emboss-6.6.0+dfsg/configure:21744: DEPDIR=`sed -n 's/^DEPDIR = //p' < "$mf"`
emboss-6.6.0+dfsg/configure-21745- test -z "$DEPDIR" && continue
emboss-6.6.0+dfsg/configure:21746: am__include=`sed -n 's/^am__include = //p' < "$mf"`
emboss-6.6.0+dfsg/configure-21747- test -z "am__include" && continue
emboss-6.6.0+dfsg/configure:21748: am__quote=`sed -n 's/^am__quote = //p' < "$mf"`
emboss-6.6.0+dfsg/configure-21749- # Find all dependency output files, they are included files with
##############################################
emboss-6.6.0+dfsg/configure-21802-
emboss-6.6.0+dfsg/configure:21803:# `$ECHO "$ofile" | sed 's%^.*/%%'` - Provide generalized library-building support services.
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emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu-2572-M8`N8!MO`CFJU/K(>CTS51JJ_KYZJOE)]J?J-ZM>KQ_XM/'B>ZE\^]3\U>$:B
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu-2573-MGFL&2R!3.#;78P9'3<I.45H\(H#.>DQB?UI9CR'.6%N/*1SOK\<,CE_/5LH#
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu:2574:M_?GPV*8MD]NCA1V/;-ZT[C\;`ED,2!D,@'Z0!V$P!C;AQ4^"[6`$UQO`3K`9
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu:2575:M`[+M$[.BH`!VX(S->.23Y_IOLE1D.'`0K_(L1I!4]RP/`/M']O-X_<327EQZ
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu-2576-M5KZVUI"^31@U:O]<Z]!C2ZWR1H/?;G?CKG8I_Y\"#`!B$X:D#0UE;F1S=')E
##############################################
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu-2578-M5&EM97,M271A;&EC+T9O;G1&:6QE,B`X(#`@4B]&;&%G<R`Y."]$97-C96YT
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu:2579:M("TR-3`O1F]N=$)";WA;+3$V.2`M,C$W(#$P,3`@.#@S72]!<V-E;G0@-S4P
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu:2580:M+T-A<$AE:6=H="`V-3,O6$AE:6=H="`T-#$O5'EP92]&;VYT1&5S8W)I<'1O
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu-2581-M<B])=&%L:6-!;F=L92`M,34O4W1E;4@@-S8^/@UE;F1O8FH-,3`@,"!O8FH\
##############################################
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu-2585-M;&4@,#X^#65N9&]B:@TQ,2`P(&]B:CP\+U-U8G1Y<&4O5')U951Y<&4O1F]N
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu:2586:M=$1E<V-R:7!T;W(@.2`P(%(O3&%S=$-H87(@,3$V+U=I9'1H<ULR-3`@,"`P
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu-2587-M(#`@,"`P(#`@,"`P(#`@,"`P(#`@,"`P(#`@,"`P(#`@,"`P(#`@,"`P(#`@
##############################################
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu-2595-M,S,@,"`P(#(U,"`S,S,@,C4P(#(W."`P(#`@-3`P(#`@,"`P(#`@,"`P(#`@
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu:2596:M,C<X(#`@,"`P(#`@,"`Y,C$@-S(R(#8V-R`V-C<@-S(R(#8Q,2`U-38@-S(R
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu-2597-M(#<R,B`S,S,@,"`W,C(@,"`X.#D@-S(R(#<R,B`U-38@-S(R(#8V-R`U-38@
##############################################
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu-2610-M-3`@,S,S(#(U,"`P(#`@-3`P(#`@,"`P(#`@,"`P(#`@,"`S,S,@,"`P(#`@
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu:2611:M,"`P(#`@-S(R(#8V-R`W,C(@-S(R(#8V-R`V,3$@-S<X(#`@,S@Y(#`@,"`V
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu:2612:M-C<@.30T(#<R,B`W-S@@-C$Q(#`@-S(R(#4U-B`V-C<@-S(R(#`@,3`P,"`W
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu-2613-M,C(@,"`P(#,S,R`P(#,S,R`P(#`@,"`U,#`@-34V(#0T-"`U-38@-#0T(#,S
##############################################
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu-2623-M>&UL;G,Z>#TB861O8F4Z;G,Z;65T82\B('@Z>&UP=&L](C,N,2TW,#$B/@H@
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu:2624:M("`\<F1F.E)$1B!X;6QN<SIR9&8](FAT='`Z+R]W=W<N=S,N;W)G+S$Y.3DO
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu-2625-M,#(O,C(M<F1F+7-Y;G1A>"UN<R,B/@H@("`@("`\<F1F.D1E<V-R:7!T:6]N
##############################################
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu-2631-M<#TB:'1T<#HO+VYS+F%D;V)E+F-O;2]X87`O,2XP+R(^"B`@("`@("`@(#QX
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu:2632:M87`Z36]D:69Y1&%T93XR,#`W+3$P+3`Y5#$V.C$U.C`V*S`Q.C`P/"]X87`Z
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu-2633-M36]D:69Y1&%T93X*("`@("`@("`@/'AA<#I#<F5A=&]R5&]O;#Y7;W)D.B!C
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu-2634-M9W!D9G1O<',@0U504R!F:6QT97(\+WAA<#I#<F5A=&]R5&]O;#X*("`@("`@
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu:2635:M("`@/'AA<#I#<F5A=&5$871E/C(P,#<M,3`M,#E4,38Z,34Z,#8K,#$Z,#`\
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu:2636:M+WAA<#I#<F5A=&5$871E/@H@("`@("`\+W)D9CI$97-C<FEP=&EO;CX*("`@
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu:2637:M("`@/')D9CI$97-C<FEP=&EO;B!R9&8Z86)O=70](B(*("`@("`@("`@("`@
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu-2638-M>&UL;G,Z9&,](FAT='`Z+R]P=7)L+F]R9R]D8R]E;&5M96YT<R\Q+C$O(CX*
##############################################
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu-2641-M/@H@("`@("`@("`@("`@("`\<F1F.FQI/D1A=FED($UA<G1I;CPO<F1F.FQI
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu:2642:M/@H@("`@("`@("`@("`\+W)D9CI397$^"B`@("`@("`@(#PO9&,Z8W)E871O
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu-2643-M<CX*("`@("`@("`@/&1C.G1I=&QE/@H@("`@("`@("`@("`\<F1F.D%L=#X*
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu-2644-M("`@("`@("`@("`@("`@/')D9CIL:2!X;6PZ;&%N9STB>"UD969A=6QT(CY-
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu:2645:M:6-R;W-O9G0@5V]R9"`M($5-0D]34U]Q9RYD;V,\+W)D9CIL:3X*("`@("`@
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu-2646-M("`@("`@/"]R9&8Z06QT/@H@("`@("`@("`\+V1C.G1I=&QE/@H@("`@("`\
##############################################
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu-2653-M+WAA<$U-.DEN<W1A;F-E240^"B`@("`@(#PO<F1F.D1E<V-R:7!T:6]N/@H@
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu:2654:M("`\+W)D9CI21$8^"CPO>#IX;7!M971A/@H@("`@("`@("`@("`@("`@("`@
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu-2655-M("`@("`@("`@("`@("`@("`@("`@("`@("`@("`@("`@("`@("`@("`@("`@
##############################################
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu-2708-M,#`@;@T*,#`P,#`W-C`W-R`P,#`P,"!N#0HP,#`P,#DQ-S4P(#`P,#`P(&X-
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu:2709:M"C`P,#`P.3$Y-3@@,#`P,#`@;@T*,#`P,#$P.30R-2`P,#`P,"!N#0HP,#`P
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu:2710:M,3`Y-C(X(#`P,#`P(&X-"C`P,#`Q,34X.#4@,#`P,#`@;@T*,#`P,#$Q-C`Y
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu:2711:M,2`P,#`P,"!N#0HP,#`P,3$V,C0Y(#`P,#`P(&X-"C`P,#`Q,38U.3,@,#`P
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu:2712:M,#`@;@T*,#`P,#$Q-S$P-B`P,#`P,"!N#0HP,#`P,3$W,C8T(#`P,#`P(&X-
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu:2713:M"C`P,#`Q,3<W,#4@,#`P,#`@;@T*,#`P,#$Q-S<T,"`P,#`P,"!N#0HP,#`P
emboss-6.6.0+dfsg/debian/EMBOSS_qg_new.pdf.uu-2714-M,3$W-S8T(#`P,#`P(&X-"C`P,#`Q,3<X,C(@,#`P,#`@;@T*,#`P,#$R,30U
##############################################
emboss-6.6.0+dfsg/debian/patches/bashism.patch-9-
emboss-6.6.0+dfsg/debian/patches/bashism.patch:10: TCVERSION=`sed -n -e 's|\(.*\)Running The Apache Tomcat 6.0\(.*\)|6|p' $TOMCAT_ROOT/RUNNING.txt`
emboss-6.6.0+dfsg/debian/patches/bashism.patch-11-
##############################################
emboss-6.6.0+dfsg/debian/rules-66- for i in $(EMBOSS-TMP)/usr/lib/emboss/* ; \
emboss-6.6.0+dfsg/debian/rules:67: do ln -sf ../lib/emboss/`basename $$i` . ; \
emboss-6.6.0+dfsg/debian/rules-68- done
##############################################
emboss-6.6.0+dfsg/.pc/fix-postgresql-macro.patch/m4/postgresql.m4-89-
emboss-6.6.0+dfsg/.pc/fix-postgresql-macro.patch/m4/postgresql.m4:90: POSTGRESQL_CFLAGS="-I`${POSTGRESQL_CONFIG} --includedir`"
emboss-6.6.0+dfsg/.pc/fix-postgresql-macro.patch/m4/postgresql.m4:91: POSTGRESQL_CPPFLAGS="-I`${POSTGRESQL_CONFIG} --includedir`"
emboss-6.6.0+dfsg/.pc/fix-postgresql-macro.patch/m4/postgresql.m4:92: POSTGRESQL_LDFLAGS="-L`${POSTGRESQL_CONFIG} --libdir` -lpq"
emboss-6.6.0+dfsg/.pc/fix-postgresql-macro.patch/m4/postgresql.m4-93-
emboss-6.6.0+dfsg/.pc/fix-postgresql-macro.patch/m4/postgresql.m4:94: POSTGRESQL_VERSION=`${POSTGRESQL_CONFIG} --version | sed -e 's#PostgreSQL ##'`
emboss-6.6.0+dfsg/.pc/fix-postgresql-macro.patch/m4/postgresql.m4-95-
##############################################
emboss-6.6.0+dfsg/.pc/fix-postgresql-macro.patch/m4/postgresql.m4-147-
emboss-6.6.0+dfsg/.pc/fix-postgresql-macro.patch/m4/postgresql.m4:148: postgresql_version_req_major=`expr ${postgresql_version_req} : '\([[0-9]]*\)'`
emboss-6.6.0+dfsg/.pc/fix-postgresql-macro.patch/m4/postgresql.m4:149: postgresql_version_req_minor=`expr ${postgresql_version_req} : '[[0-9]]*\.\([[0-9]]*\)'`
emboss-6.6.0+dfsg/.pc/fix-postgresql-macro.patch/m4/postgresql.m4:150: postgresql_version_req_micro=`expr ${postgresql_version_req} : '[[0-9]]*\.[[0-9]]*\.\([[0-9]]*\)'`
emboss-6.6.0+dfsg/.pc/fix-postgresql-macro.patch/m4/postgresql.m4-151-
##############################################
emboss-6.6.0+dfsg/.pc/fix-postgresql-macro.patch/m4/postgresql.m4-161-
emboss-6.6.0+dfsg/.pc/fix-postgresql-macro.patch/m4/postgresql.m4:162: postgresql_version_major=`expr ${POSTGRESQL_VERSION} : '\([[0-9]]*\)'`
emboss-6.6.0+dfsg/.pc/fix-postgresql-macro.patch/m4/postgresql.m4:163: postgresql_version_minor=`expr ${POSTGRESQL_VERSION} : '[[0-9]]*\.\([[0-9]]*\)'`
emboss-6.6.0+dfsg/.pc/fix-postgresql-macro.patch/m4/postgresql.m4:164: postgresql_version_micro=`expr ${POSTGRESQL_VERSION} : '[[0-9]]*\.[[0-9]]*\.\([[0-9]]*\)'`
emboss-6.6.0+dfsg/.pc/fix-postgresql-macro.patch/m4/postgresql.m4-165-
##############################################
emboss-6.6.0+dfsg/.pc/fix-postgresql-macro.patch/m4/postgresql.m4-172-
emboss-6.6.0+dfsg/.pc/fix-postgresql-macro.patch/m4/postgresql.m4:173: postgresql_version_check=`expr ${postgresql_version_number} \>\= ${postgresql_version_req_number}`
emboss-6.6.0+dfsg/.pc/fix-postgresql-macro.patch/m4/postgresql.m4-174-
##############################################
emboss-6.6.0+dfsg/.pc/fix-mysql-macro.patch/m4/mysql.m4-92-
emboss-6.6.0+dfsg/.pc/fix-mysql-macro.patch/m4/mysql.m4:93: MYSQL_CFLAGS="`${MYSQL_CONFIG} --cflags`"
emboss-6.6.0+dfsg/.pc/fix-mysql-macro.patch/m4/mysql.m4:94: MYSQL_CPPFLAGS="`${MYSQL_CONFIG} --include`"
emboss-6.6.0+dfsg/.pc/fix-mysql-macro.patch/m4/mysql.m4:95: MYSQL_LDFLAGS="`${MYSQL_CONFIG} --libs`"
emboss-6.6.0+dfsg/.pc/fix-mysql-macro.patch/m4/mysql.m4-96-
emboss-6.6.0+dfsg/.pc/fix-mysql-macro.patch/m4/mysql.m4:97: MYSQL_VERSION=`${MYSQL_CONFIG} --version`
emboss-6.6.0+dfsg/.pc/fix-mysql-macro.patch/m4/mysql.m4-98-
##############################################
emboss-6.6.0+dfsg/.pc/fix-mysql-macro.patch/m4/mysql.m4-150-
emboss-6.6.0+dfsg/.pc/fix-mysql-macro.patch/m4/mysql.m4:151: mysql_version_req_major=`expr ${mysql_version_req} : '\([[0-9]]*\)'`
emboss-6.6.0+dfsg/.pc/fix-mysql-macro.patch/m4/mysql.m4:152: mysql_version_req_minor=`expr ${mysql_version_req} : '[[0-9]]*\.\([[0-9]]*\)'`
emboss-6.6.0+dfsg/.pc/fix-mysql-macro.patch/m4/mysql.m4:153: mysql_version_req_micro=`expr ${mysql_version_req} : '[[0-9]]*\.[[0-9]]*\.\([[0-9]]*\)'`
emboss-6.6.0+dfsg/.pc/fix-mysql-macro.patch/m4/mysql.m4-154-
##############################################
emboss-6.6.0+dfsg/.pc/fix-mysql-macro.patch/m4/mysql.m4-164-
emboss-6.6.0+dfsg/.pc/fix-mysql-macro.patch/m4/mysql.m4:165: mysql_version_major=`expr ${MYSQL_VERSION} : '\([[0-9]]*\)'`
emboss-6.6.0+dfsg/.pc/fix-mysql-macro.patch/m4/mysql.m4:166: mysql_version_minor=`expr ${MYSQL_VERSION} : '[[0-9]]*\.\([[0-9]]*\)'`
emboss-6.6.0+dfsg/.pc/fix-mysql-macro.patch/m4/mysql.m4:167: mysql_version_micro=`expr ${MYSQL_VERSION} : '[[0-9]]*\.[[0-9]]*\.\([[0-9]]*\)'`
emboss-6.6.0+dfsg/.pc/fix-mysql-macro.patch/m4/mysql.m4-168-
##############################################
emboss-6.6.0+dfsg/.pc/fix-mysql-macro.patch/m4/mysql.m4-175-
emboss-6.6.0+dfsg/.pc/fix-mysql-macro.patch/m4/mysql.m4:176: mysql_version_check=`expr ${mysql_version_number} \>\= ${mysql_version_req_number}`
emboss-6.6.0+dfsg/.pc/fix-mysql-macro.patch/m4/mysql.m4-177-
##############################################
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh-39- else
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh:40: JAVA_HOME_TMP=`dirname $JAVA_HOME_TMP`
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh:41: JAVA_HOME_TMP=`dirname $JAVA_HOME_TMP`
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh-42- fi
##############################################
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh-56- if (test "$CLUSTALW" != ""); then
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh:57: CLUSTALW=`dirname $CLUSTALW`
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh-58- echo "Enter the path to the clustalw or press return to use the"
##############################################
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh-88- if (test "$PRIMER3" != ""); then
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh:89: PRIMER3=`dirname $PRIMER3`
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh-90- echo "Enter the path to the primer3_core or press return to use the"
##############################################
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh-213-
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh:214: SECURITY=`sed -n -e 's|^security.provider.\([0-9]\)=com.sun.net.ssl.internal.ssl.Provider|security|p' $JAVA_HOME/jre/lib/security/java.security`
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh-215-
##############################################
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh-238-
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh:239: TCVERSION=`sed -n -e 's|\(.*\)Running The Tomcat 4\(.*\)|4|p' $TOMCAT_ROOT/RUNNING.txt`
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh-240-
##############################################
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh-243-
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh:244: TCVERSION=`sed -n -e 's|\(.*\)Running The Tomcat 5.5\(.*\)|5|p' $TOMCAT_ROOT/RUNNING.txt`
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh-245-
##############################################
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh-287-
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh:288: TCVERSION=`sed -n -e 's|\(.*\)Running The Apache Tomcat 6.0\(.*\)|6|p' $TOMCAT_ROOT/RUNNING.txt`
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh-289-
##############################################
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh-524- else
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh:525: for lib_dir in `echo "$include_lib_dirs"` ;
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh-526- do
##############################################
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh-541- else
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh:542: DIR=`echo $USER_CONFIG | sed -n -e 's|\(.*\)--with-pngdriver=\([^ ]*\)\(.*\)|\2|p'`
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh-543- fi
##############################################
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh-559- else
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh:560: for lib_dir in `echo "$lib_dirs"` ;
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh-561- do
##############################################
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh-599- else
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh:600: for lib_dir in `echo "$lib_dirs"` ;
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh-601- do
##############################################
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh-646- WARN="true"
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh:647: for lib_dir in `echo "$lib_dirs"` ;
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh-648- do
##############################################
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh-943-EMBOSS_DOWNLOAD_TMP=`pwd`
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh:944:EMBOSS_DOWNLOAD_TMP=`dirname $EMBOSS_DOWNLOAD_TMP`
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh:945:EMBOSS_DOWNLOAD_TMP=`dirname $EMBOSS_DOWNLOAD_TMP`
emboss-6.6.0+dfsg/.pc/bashism.patch/jemboss/utils/install-jemboss-server.sh-946-