===========================================================
.___ __ __
_________________ __ __ __| _/|__|/ |_
/ ___\_` __ \__ \ | | \/ __ | | \\_ __\
/ /_/ > | \// __ \| | / /_/ | | || |
\___ /|__| (____ /____/\____ | |__||__|
/_____/ \/ \/
grep rough audit - static analysis tool
v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
exonerate-2.4.0/Makefile.in-128- dot_seen=no; \
exonerate-2.4.0/Makefile.in:129: target=`echo $@ | sed s/-recursive//`; \
exonerate-2.4.0/Makefile.in-130- list='$(SUBDIRS)'; for subdir in $$list; do \
##############################################
exonerate-2.4.0/Makefile.in-153- test "$$dot_seen" = "no" && rev=". $$rev"; \
exonerate-2.4.0/Makefile.in:154: target=`echo $@ | sed s/-recursive//`; \
exonerate-2.4.0/Makefile.in-155- for subdir in $$rev; do \
##############################################
exonerate-2.4.0/Makefile.in-214- mkdir $(distdir)/=inst
exonerate-2.4.0/Makefile.in:215: dc_install_base=`cd $(distdir)/=inst && pwd`; \
exonerate-2.4.0/Makefile.in-216- cd $(distdir)/=build \
##############################################
exonerate-2.4.0/Makefile.in-225- @banner="$(distdir).tar.gz is ready for distribution"; \
exonerate-2.4.0/Makefile.in:226: dashes=`echo "$$banner" | sed s/./=/g`; \
exonerate-2.4.0/Makefile.in-227- echo "$$dashes"; \
##############################################
exonerate-2.4.0/aclocal.m4-180- acl_libdirstem=lib
exonerate-2.4.0/aclocal.m4:181: searchpath=`(LC_ALL=C $CC -print-search-dirs) 2>/dev/null | sed -n -e 's,^libraries: ,,p' | sed -e 's,^=,,'`
exonerate-2.4.0/aclocal.m4-182- if test -n "$searchpath"; then
##############################################
exonerate-2.4.0/aclocal.m4-187- */lib64/ | */lib64 ) acl_libdirstem=lib64 ;;
exonerate-2.4.0/aclocal.m4:188: *) searchdir=`cd "$searchdir" && pwd`
exonerate-2.4.0/aclocal.m4-189- case "$searchdir" in
##############################################
exonerate-2.4.0/aclocal.m4-377- dnl or AC_LIB_HAVE_LINKFLAGS call.
exonerate-2.4.0/aclocal.m4:378: uppername=`echo "$name" | sed -e 'y|abcdefghijklmnopqrstuvwxyz./-|ABCDEFGHIJKLMNOPQRSTUVWXYZ___|'`
exonerate-2.4.0/aclocal.m4-379- eval value=\"\$HAVE_LIB$uppername\"
##############################################
exonerate-2.4.0/aclocal.m4-426- -L*)
exonerate-2.4.0/aclocal.m4:427: dir=`echo "X$x" | sed -e 's/^X-L//'`
exonerate-2.4.0/aclocal.m4-428- if test -n "$shlibext" \
##############################################
exonerate-2.4.0/aclocal.m4-550- */$acl_libdirstem | */$acl_libdirstem/)
exonerate-2.4.0/aclocal.m4:551: basedir=`echo "X$found_dir" | sed -e 's,^X,,' -e "s,/$acl_libdirstem/"'*$,,'`
exonerate-2.4.0/aclocal.m4-552- additional_includedir="$basedir/include"
##############################################
exonerate-2.4.0/aclocal.m4-603- -L*)
exonerate-2.4.0/aclocal.m4:604: additional_libdir=`echo "X$dep" | sed -e 's/^X-L//'`
exonerate-2.4.0/aclocal.m4-605- dnl Potentially add $additional_libdir to $LIBNAME and $LTLIBNAME.
##############################################
exonerate-2.4.0/aclocal.m4-653- -R*)
exonerate-2.4.0/aclocal.m4:654: dir=`echo "X$dep" | sed -e 's/^X-R//'`
exonerate-2.4.0/aclocal.m4-655- if test "$enable_rpath" != no; then
##############################################
exonerate-2.4.0/aclocal.m4-683- dnl Handle this in the next round.
exonerate-2.4.0/aclocal.m4:684: names_next_round="$names_next_round "`echo "X$dep" | sed -e 's/^X-l//'`
exonerate-2.4.0/aclocal.m4-685- ;;
##############################################
exonerate-2.4.0/aclocal.m4-689- dnl option.
exonerate-2.4.0/aclocal.m4:690: names_next_round="$names_next_round "`echo "X$dep" | sed -e 's,^X.*/,,' -e 's,^lib,,' -e 's,\.la$,,'`
exonerate-2.4.0/aclocal.m4-691- ;;
##############################################
exonerate-2.4.0/aclocal.m4-796- -L) next=yes ;;
exonerate-2.4.0/aclocal.m4:797: -L*) dir=`echo "X$opt" | sed -e 's,^X-L,,'`
exonerate-2.4.0/aclocal.m4-798- dnl No need to hardcode the standard /usr/lib.
##############################################
exonerate-2.4.0/aclocal.m4-857-[# I'd rather use --version here, but apparently some GNU ld's only accept -v.
exonerate-2.4.0/aclocal.m4:858:case `$LD -v 2>&1 </dev/null` in
exonerate-2.4.0/aclocal.m4-859-*GNU* | *'with BFD'*)
##############################################
exonerate-2.4.0/aclocal.m4-893- # gcc leaves a trailing carriage return which upsets mingw
exonerate-2.4.0/aclocal.m4:894: ac_prog=`($CC -print-prog-name=ld) 2>&5 | tr -d '\015'` ;;
exonerate-2.4.0/aclocal.m4-895- *)
exonerate-2.4.0/aclocal.m4:896: ac_prog=`($CC -print-prog-name=ld) 2>&5` ;;
exonerate-2.4.0/aclocal.m4-897- esac
##############################################
exonerate-2.4.0/aclocal.m4-902- # Canonicalize the path of ld
exonerate-2.4.0/aclocal.m4:903: ac_prog=`echo $ac_prog| sed 's%\\\\%/%g'`
exonerate-2.4.0/aclocal.m4-904- while echo $ac_prog | grep "$re_direlt" > /dev/null 2>&1; do
exonerate-2.4.0/aclocal.m4:905: ac_prog=`echo $ac_prog| sed "s%$re_direlt%/%"`
exonerate-2.4.0/aclocal.m4-906- done
##############################################
exonerate-2.4.0/aclocal.m4-932- # Break only if it was the GNU/non-GNU ld that we prefer.
exonerate-2.4.0/aclocal.m4:933: case `"$acl_cv_path_LD" -v 2>&1 < /dev/null` in
exonerate-2.4.0/aclocal.m4-934- *GNU* | *'with BFD'*)
##############################################
exonerate-2.4.0/aclocal.m4-971-dnl test to see if srcdir already configured
exonerate-2.4.0/aclocal.m4:972:if test "`cd $srcdir && pwd`" != "`pwd`" && test -f $srcdir/config.status; then
exonerate-2.4.0/aclocal.m4-973- AC_MSG_ERROR([source directory already configured; run "make distclean" there first])
##############################################
exonerate-2.4.0/aclocal.m4-980-dnl FIXME This is truly gross.
exonerate-2.4.0/aclocal.m4:981:missing_dir=`cd $ac_aux_dir && pwd`
exonerate-2.4.0/aclocal.m4-982-AM_MISSING_PROG(ACLOCAL, aclocal-${am__api_version}, $missing_dir)
##############################################
exonerate-2.4.0/aclocal.m4-1032-if (
exonerate-2.4.0/aclocal.m4:1033: set X `ls -Lt $srcdir/configure conftestfile 2> /dev/null`
exonerate-2.4.0/aclocal.m4-1034- if test "[$]*" = "X"; then
exonerate-2.4.0/aclocal.m4-1035- # -L didn't work.
exonerate-2.4.0/aclocal.m4:1036: set X `ls -t $srcdir/configure conftestfile`
exonerate-2.4.0/aclocal.m4-1037- fi
##############################################
exonerate-2.4.0/config.guess-36-
exonerate-2.4.0/config.guess:37:me=`echo "$0" | sed -e 's,.*/,,'`
exonerate-2.4.0/config.guess-38-
##############################################
exonerate-2.4.0/config.guess-168- # The OS release
exonerate-2.4.0/config.guess:169: release=`echo ${UNAME_RELEASE}|sed -e 's/[-_].*/\./'`
exonerate-2.4.0/config.guess-170- # Since CPU_TYPE-MANUFACTURER-KERNEL-OPERATING_SYSTEM:
##############################################
exonerate-2.4.0/config.guess-176- if test $UNAME_RELEASE = "V4.0"; then
exonerate-2.4.0/config.guess:177: UNAME_RELEASE=`/usr/sbin/sizer -v | awk '{print $3}'`
exonerate-2.4.0/config.guess-178- fi
##############################################
exonerate-2.4.0/config.guess-210- if test "$?" = 0 ; then
exonerate-2.4.0/config.guess:211: case `./$dummy` in
exonerate-2.4.0/config.guess-212- 0-0)
##############################################
exonerate-2.4.0/config.guess-235- rm -f $dummy.s $dummy
exonerate-2.4.0/config.guess:236: echo ${UNAME_MACHINE}-dec-osf`echo ${UNAME_RELEASE} | sed -e 's/^[VTX]//' | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz'`
exonerate-2.4.0/config.guess-237- exit 0 ;;
##############################################
exonerate-2.4.0/config.guess-294- sun4H:SunOS:5.*:*)
exonerate-2.4.0/config.guess:295: echo sparc-hal-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
exonerate-2.4.0/config.guess-296- exit 0 ;;
exonerate-2.4.0/config.guess-297- sun4*:SunOS:5.*:* | tadpole*:SunOS:5.*:*)
exonerate-2.4.0/config.guess:298: echo sparc-sun-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
exonerate-2.4.0/config.guess-299- exit 0 ;;
exonerate-2.4.0/config.guess-300- i86pc:SunOS:5.*:*)
exonerate-2.4.0/config.guess:301: echo i386-pc-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
exonerate-2.4.0/config.guess-302- exit 0 ;;
##############################################
exonerate-2.4.0/config.guess-306- # it's likely to be more like Solaris than SunOS4.
exonerate-2.4.0/config.guess:307: echo sparc-sun-solaris3`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
exonerate-2.4.0/config.guess-308- exit 0 ;;
##############################################
exonerate-2.4.0/config.guess-315- # Japanese Language versions have a version number like `4.1.3-JL'.
exonerate-2.4.0/config.guess:316: echo sparc-sun-sunos`echo ${UNAME_RELEASE}|sed -e 's/-/_/'`
exonerate-2.4.0/config.guess-317- exit 0 ;;
##############################################
exonerate-2.4.0/config.guess-321- sun*:*:4.2BSD:*)
exonerate-2.4.0/config.guess:322: UNAME_RELEASE=`(head -1 /etc/motd | awk '{print substr($5,1,3)}') 2>/dev/null`
exonerate-2.4.0/config.guess-323- test "x${UNAME_RELEASE}" = "x" && UNAME_RELEASE=3
##############################################
exonerate-2.4.0/config.guess-418- $CC_FOR_BUILD $dummy.c -o $dummy \
exonerate-2.4.0/config.guess:419: && ./$dummy `echo "${UNAME_RELEASE}" | sed -n 's/\([0-9]*\).*/\1/p'` \
exonerate-2.4.0/config.guess-420- && rm -f $dummy.c $dummy && exit 0
##############################################
exonerate-2.4.0/config.guess-468- *:IRIX*:*:*)
exonerate-2.4.0/config.guess:469: echo mips-sgi-irix`echo ${UNAME_RELEASE}|sed -e 's/-/_/g'`
exonerate-2.4.0/config.guess-470- exit 0 ;;
##############################################
exonerate-2.4.0/config.guess-508- *:AIX:*:[45])
exonerate-2.4.0/config.guess:509: IBM_CPU_ID=`/usr/sbin/lsdev -C -c processor -S available | head -1 | awk '{ print $1 }'`
exonerate-2.4.0/config.guess-510- if /usr/sbin/lsattr -El ${IBM_CPU_ID} | grep ' POWER' >/dev/null 2>&1; then
##############################################
exonerate-2.4.0/config.guess-543- 9000/[34678]??:HP-UX:*:*)
exonerate-2.4.0/config.guess:544: HPUX_REV=`echo ${UNAME_RELEASE}|sed -e 's/[^.]*.[0B]*//'`
exonerate-2.4.0/config.guess-545- case "${UNAME_MACHINE}" in
##############################################
exonerate-2.4.0/config.guess-599-EOF
exonerate-2.4.0/config.guess:600: (CCOPTS= $CC_FOR_BUILD $dummy.c -o $dummy 2>/dev/null ) && HP_ARCH=`./$dummy`
exonerate-2.4.0/config.guess-601- if test -z "$HP_ARCH"; then HP_ARCH=hppa; fi
##############################################
exonerate-2.4.0/config.guess-607- ia64:HP-UX:*:*)
exonerate-2.4.0/config.guess:608: HPUX_REV=`echo ${UNAME_RELEASE}|sed -e 's/[^.]*.[0B]*//'`
exonerate-2.4.0/config.guess-609- echo ia64-hp-hpux${HPUX_REV}
##############################################
exonerate-2.4.0/config.guess-717- FUJITSU_SYS=`uname -p | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/\///'`
exonerate-2.4.0/config.guess:718: FUJITSU_REL=`echo ${UNAME_RELEASE} | sed -e 's/ /_/'`
exonerate-2.4.0/config.guess-719- echo "${FUJITSU_PROC}-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}"
##############################################
exonerate-2.4.0/config.guess-733- *:FreeBSD:*:*)
exonerate-2.4.0/config.guess:734: echo ${UNAME_MACHINE}-unknown-freebsd`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'`
exonerate-2.4.0/config.guess-735- exit 0 ;;
exonerate-2.4.0/config.guess-736- *:OpenBSD:*:*)
exonerate-2.4.0/config.guess:737: echo ${UNAME_MACHINE}-unknown-openbsd`echo ${UNAME_RELEASE}|sed -e 's/[-_].*/\./'`
exonerate-2.4.0/config.guess-738- exit 0 ;;
##############################################
exonerate-2.4.0/config.guess-760- prep*:SunOS:5.*:*)
exonerate-2.4.0/config.guess:761: echo powerpcle-unknown-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
exonerate-2.4.0/config.guess-762- exit 0 ;;
exonerate-2.4.0/config.guess-763- *:GNU:*:*)
exonerate-2.4.0/config.guess:764: echo `echo ${UNAME_MACHINE}|sed -e 's,[-/].*$,,'`-unknown-gnu`echo ${UNAME_RELEASE}|sed -e 's,/.*$,,'`
exonerate-2.4.0/config.guess-765- exit 0 ;;
##############################################
exonerate-2.4.0/config.guess-897- i*86:*:4.*:* | i*86:SYSTEM_V:4.*:*)
exonerate-2.4.0/config.guess:898: UNAME_REL=`echo ${UNAME_RELEASE} | sed 's/\/MP$//'`
exonerate-2.4.0/config.guess-899- if grep Novell /usr/include/link.h >/dev/null 2>/dev/null; then
##############################################
exonerate-2.4.0/config.sub-53-
exonerate-2.4.0/config.sub:54:me=`echo "$0" | sed -e 's,.*/,,'`
exonerate-2.4.0/config.sub-55-
##############################################
exonerate-2.4.0/config.sub-117-# Here we must recognize all the valid KERNEL-OS combinations.
exonerate-2.4.0/config.sub:118:maybe_os=`echo $1 | sed 's/^\(.*\)-\([^-]*-[^-]*\)$/\2/'`
exonerate-2.4.0/config.sub-119-case $maybe_os in
##############################################
exonerate-2.4.0/config.sub-121- os=-$maybe_os
exonerate-2.4.0/config.sub:122: basic_machine=`echo $1 | sed 's/^\(.*\)-\([^-]*-[^-]*\)$/\1/'`
exonerate-2.4.0/config.sub-123- ;;
exonerate-2.4.0/config.sub-124- *)
exonerate-2.4.0/config.sub:125: basic_machine=`echo $1 | sed 's/-[^-]*$//'`
exonerate-2.4.0/config.sub-126- if [ $basic_machine != $1 ]
exonerate-2.4.0/config.sub:127: then os=`echo $1 | sed 's/.*-/-/'`
exonerate-2.4.0/config.sub-128- else os=; fi
##############################################
exonerate-2.4.0/config.sub-172- os=-sco3.2v5
exonerate-2.4.0/config.sub:173: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
exonerate-2.4.0/config.sub-174- ;;
##############################################
exonerate-2.4.0/config.sub-176- os=-sco3.2v4
exonerate-2.4.0/config.sub:177: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
exonerate-2.4.0/config.sub-178- ;;
exonerate-2.4.0/config.sub-179- -sco3.2.[4-9]*)
exonerate-2.4.0/config.sub:180: os=`echo $os | sed -e 's/sco3.2./sco3.2v/'`
exonerate-2.4.0/config.sub:181: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
exonerate-2.4.0/config.sub-182- ;;
##############################################
exonerate-2.4.0/config.sub-184- # Don't forget version if it is 3.2v4 or newer.
exonerate-2.4.0/config.sub:185: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
exonerate-2.4.0/config.sub-186- ;;
##############################################
exonerate-2.4.0/config.sub-188- os=-sco3.2v2
exonerate-2.4.0/config.sub:189: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
exonerate-2.4.0/config.sub-190- ;;
exonerate-2.4.0/config.sub-191- -udk*)
exonerate-2.4.0/config.sub:192: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
exonerate-2.4.0/config.sub-193- ;;
##############################################
exonerate-2.4.0/config.sub-195- os=-isc2.2
exonerate-2.4.0/config.sub:196: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
exonerate-2.4.0/config.sub-197- ;;
##############################################
exonerate-2.4.0/config.sub-201- -isc*)
exonerate-2.4.0/config.sub:202: basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
exonerate-2.4.0/config.sub-203- ;;
##############################################
exonerate-2.4.0/config.sub-207- -ptx*)
exonerate-2.4.0/config.sub:208: basic_machine=`echo $1 | sed -e 's/86-.*/86-sequent/'`
exonerate-2.4.0/config.sub-209- ;;
exonerate-2.4.0/config.sub-210- -windowsnt*)
exonerate-2.4.0/config.sub:211: os=`echo $os | sed -e 's/windowsnt/winnt/'`
exonerate-2.4.0/config.sub-212- ;;
##############################################
exonerate-2.4.0/config.sub-273- *-*-*)
exonerate-2.4.0/config.sub:274: echo Invalid configuration \`$1\': machine \`$basic_machine\' not recognized 1>&2
exonerate-2.4.0/config.sub-275- exit 1
##############################################
exonerate-2.4.0/config.sub-541- i*86v32)
exonerate-2.4.0/config.sub:542: basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
exonerate-2.4.0/config.sub-543- os=-sysv32
##############################################
exonerate-2.4.0/config.sub-545- i*86v4*)
exonerate-2.4.0/config.sub:546: basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
exonerate-2.4.0/config.sub-547- os=-sysv4
##############################################
exonerate-2.4.0/config.sub-549- i*86v)
exonerate-2.4.0/config.sub:550: basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
exonerate-2.4.0/config.sub-551- os=-sysv
##############################################
exonerate-2.4.0/config.sub-553- i*86sol2)
exonerate-2.4.0/config.sub:554: basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
exonerate-2.4.0/config.sub-555- os=-solaris2
##############################################
exonerate-2.4.0/config.sub-609- mips3*-*)
exonerate-2.4.0/config.sub:610: basic_machine=`echo $basic_machine | sed -e 's/mips3/mips64/'`
exonerate-2.4.0/config.sub-611- ;;
exonerate-2.4.0/config.sub-612- mips3*)
exonerate-2.4.0/config.sub:613: basic_machine=`echo $basic_machine | sed -e 's/mips3/mips64/'`-unknown
exonerate-2.4.0/config.sub-614- ;;
##############################################
exonerate-2.4.0/config.sub-736- pentium-* | p5-* | k5-* | k6-* | nexgen-*)
exonerate-2.4.0/config.sub:737: basic_machine=i586-`echo $basic_machine | sed 's/^[^-]*-//'`
exonerate-2.4.0/config.sub-738- ;;
exonerate-2.4.0/config.sub-739- pentiumpro-* | p6-* | 6x86-* | athlon-*)
exonerate-2.4.0/config.sub:740: basic_machine=i686-`echo $basic_machine | sed 's/^[^-]*-//'`
exonerate-2.4.0/config.sub-741- ;;
exonerate-2.4.0/config.sub-742- pentiumii-* | pentium2-*)
exonerate-2.4.0/config.sub:743: basic_machine=i686-`echo $basic_machine | sed 's/^[^-]*-//'`
exonerate-2.4.0/config.sub-744- ;;
##############################################
exonerate-2.4.0/config.sub-751- ;;
exonerate-2.4.0/config.sub:752: ppc-*) basic_machine=powerpc-`echo $basic_machine | sed 's/^[^-]*-//'`
exonerate-2.4.0/config.sub-753- ;;
##############################################
exonerate-2.4.0/config.sub-757- ppcle-* | powerpclittle-*)
exonerate-2.4.0/config.sub:758: basic_machine=powerpcle-`echo $basic_machine | sed 's/^[^-]*-//'`
exonerate-2.4.0/config.sub-759- ;;
##############################################
exonerate-2.4.0/config.sub-761- ;;
exonerate-2.4.0/config.sub:762: ppc64-*) basic_machine=powerpc64-`echo $basic_machine | sed 's/^[^-]*-//'`
exonerate-2.4.0/config.sub-763- ;;
##############################################
exonerate-2.4.0/config.sub-767- ppc64le-* | powerpc64little-*)
exonerate-2.4.0/config.sub:768: basic_machine=powerpc64le-`echo $basic_machine | sed 's/^[^-]*-//'`
exonerate-2.4.0/config.sub-769- ;;
##############################################
exonerate-2.4.0/config.sub-1009- *)
exonerate-2.4.0/config.sub:1010: echo Invalid configuration \`$1\': machine \`$basic_machine\' not recognized 1>&2
exonerate-2.4.0/config.sub-1011- exit 1
##############################################
exonerate-2.4.0/config.sub-1017- *-digital*)
exonerate-2.4.0/config.sub:1018: basic_machine=`echo $basic_machine | sed 's/digital.*/dec/'`
exonerate-2.4.0/config.sub-1019- ;;
exonerate-2.4.0/config.sub-1020- *-commodore*)
exonerate-2.4.0/config.sub:1021: basic_machine=`echo $basic_machine | sed 's/commodore.*/cbm/'`
exonerate-2.4.0/config.sub-1022- ;;
##############################################
exonerate-2.4.0/config.sub-1035- -solaris1 | -solaris1.*)
exonerate-2.4.0/config.sub:1036: os=`echo $os | sed -e 's|solaris1|sunos4|'`
exonerate-2.4.0/config.sub-1037- ;;
##############################################
exonerate-2.4.0/config.sub-1047- -gnu/linux*)
exonerate-2.4.0/config.sub:1048: os=`echo $os | sed -e 's|gnu/linux|linux-gnu|'`
exonerate-2.4.0/config.sub-1049- ;;
##############################################
exonerate-2.4.0/config.sub-1090- -mac*)
exonerate-2.4.0/config.sub:1091: os=`echo $os | sed -e 's|mac|macos|'`
exonerate-2.4.0/config.sub-1092- ;;
exonerate-2.4.0/config.sub-1093- -linux*)
exonerate-2.4.0/config.sub:1094: os=`echo $os | sed -e 's|linux|linux-gnu|'`
exonerate-2.4.0/config.sub-1095- ;;
exonerate-2.4.0/config.sub-1096- -sunos5*)
exonerate-2.4.0/config.sub:1097: os=`echo $os | sed -e 's|sunos5|solaris2|'`
exonerate-2.4.0/config.sub-1098- ;;
exonerate-2.4.0/config.sub-1099- -sunos6*)
exonerate-2.4.0/config.sub:1100: os=`echo $os | sed -e 's|sunos6|solaris3|'`
exonerate-2.4.0/config.sub-1101- ;;
##############################################
exonerate-2.4.0/config.sub-1136- -sinix5.*)
exonerate-2.4.0/config.sub:1137: os=`echo $os | sed -e 's|sinix|sysv|'`
exonerate-2.4.0/config.sub-1138- ;;
##############################################
exonerate-2.4.0/config.sub-1175- # Get rid of the `-' at the beginning of $os.
exonerate-2.4.0/config.sub:1176: os=`echo $os | sed 's/[^-]*-//'`
exonerate-2.4.0/config.sub:1177: echo Invalid configuration \`$1\': system \`$os\' not recognized 1>&2
exonerate-2.4.0/config.sub-1178- exit 1
##############################################
exonerate-2.4.0/config.sub-1398- esac
exonerate-2.4.0/config.sub:1399: basic_machine=`echo $basic_machine | sed "s/unknown/$vendor/"`
exonerate-2.4.0/config.sub-1400- ;;
##############################################
exonerate-2.4.0/configure-107-do
exonerate-2.4.0/configure:108: if (set +x; test -z "`(eval $as_var=C; export $as_var) 2>&1`"); then
exonerate-2.4.0/configure-109- eval $as_var=C; export $as_var
##############################################
exonerate-2.4.0/configure-215- test \"x\$as_lineno_1\" != \"x\$as_lineno_2\" &&
exonerate-2.4.0/configure:216: test \"x\`expr \$as_lineno_1 + 1\`\" = \"x\$as_lineno_2\") || { (exit 1); exit 1; }
exonerate-2.4.0/configure-217-") 2> /dev/null; then
##############################################
exonerate-2.4.0/configure-330- test "x$as_lineno_1" != "x$as_lineno_2" &&
exonerate-2.4.0/configure:331: test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2") || { (exit 1); exit 1; }
exonerate-2.4.0/configure-332-
##############################################
exonerate-2.4.0/configure-425- test "x$as_lineno_1" != "x$as_lineno_2" &&
exonerate-2.4.0/configure:426: test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2" || {
exonerate-2.4.0/configure-427-
##############################################
exonerate-2.4.0/configure-536- esac;
exonerate-2.4.0/configure:537: case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in
exonerate-2.4.0/configure-538- ???[sx]*):;;*)false;;esac;fi
##############################################
exonerate-2.4.0/configure-763- case $ac_option in
exonerate-2.4.0/configure:764: *=*) ac_optarg=`expr "X$ac_option" : '[^=]*=\(.*\)'` ;;
exonerate-2.4.0/configure-765- *) ac_optarg=yes ;;
##############################################
exonerate-2.4.0/configure-806- -disable-* | --disable-*)
exonerate-2.4.0/configure:807: ac_feature=`expr "x$ac_option" : 'x-*disable-\(.*\)'`
exonerate-2.4.0/configure-808- # Reject names that are not valid shell variable names.
##############################################
exonerate-2.4.0/configure-811- { (exit 1); exit 1; }; }
exonerate-2.4.0/configure:812: ac_feature=`echo $ac_feature | sed 's/[-.]/_/g'`
exonerate-2.4.0/configure-813- eval enable_$ac_feature=no ;;
##############################################
exonerate-2.4.0/configure-825- -enable-* | --enable-*)
exonerate-2.4.0/configure:826: ac_feature=`expr "x$ac_option" : 'x-*enable-\([^=]*\)'`
exonerate-2.4.0/configure-827- # Reject names that are not valid shell variable names.
##############################################
exonerate-2.4.0/configure-830- { (exit 1); exit 1; }; }
exonerate-2.4.0/configure:831: ac_feature=`echo $ac_feature | sed 's/[-.]/_/g'`
exonerate-2.4.0/configure-832- eval enable_$ac_feature=\$ac_optarg ;;
##############################################
exonerate-2.4.0/configure-1022- -with-* | --with-*)
exonerate-2.4.0/configure:1023: ac_package=`expr "x$ac_option" : 'x-*with-\([^=]*\)'`
exonerate-2.4.0/configure-1024- # Reject names that are not valid shell variable names.
##############################################
exonerate-2.4.0/configure-1027- { (exit 1); exit 1; }; }
exonerate-2.4.0/configure:1028: ac_package=`echo $ac_package | sed 's/[-.]/_/g'`
exonerate-2.4.0/configure-1029- eval with_$ac_package=\$ac_optarg ;;
##############################################
exonerate-2.4.0/configure-1031- -without-* | --without-*)
exonerate-2.4.0/configure:1032: ac_package=`expr "x$ac_option" : 'x-*without-\(.*\)'`
exonerate-2.4.0/configure-1033- # Reject names that are not valid shell variable names.
##############################################
exonerate-2.4.0/configure-1036- { (exit 1); exit 1; }; }
exonerate-2.4.0/configure:1037: ac_package=`echo $ac_package | sed 's/[-.]/_/g'`
exonerate-2.4.0/configure-1038- eval with_$ac_package=no ;;
##############################################
exonerate-2.4.0/configure-1063- *=*)
exonerate-2.4.0/configure:1064: ac_envvar=`expr "x$ac_option" : 'x\([^=]*\)='`
exonerate-2.4.0/configure-1065- # Reject names that are not valid shell variable names.
##############################################
exonerate-2.4.0/configure-1083-if test -n "$ac_prev"; then
exonerate-2.4.0/configure:1084: ac_option=--`echo $ac_prev | sed 's/_/-/g'`
exonerate-2.4.0/configure-1085- { echo "$as_me: error: missing argument to $ac_option" >&2
##############################################
exonerate-2.4.0/configure-1129-ac_ls_di=`ls -di .` &&
exonerate-2.4.0/configure:1130:ac_pwd_ls_di=`cd "$ac_pwd" && ls -di .` ||
exonerate-2.4.0/configure-1131- { echo "$as_me: error: Working directory cannot be determined" >&2
##############################################
exonerate-2.4.0/configure-1189-case $srcdir in
exonerate-2.4.0/configure:1190:*/) srcdir=`expr "X$srcdir" : 'X\(.*[^/]\)' \| "X$srcdir" : 'X\(.*\)'`;;
exonerate-2.4.0/configure-1191-esac
##############################################
exonerate-2.4.0/configure-1232-By default, \`make install' will install all the files in
exonerate-2.4.0/configure:1233:\`$ac_default_prefix/bin', \`$ac_default_prefix/lib' etc. You can specify
exonerate-2.4.0/configure:1234:an installation prefix other than \`$ac_default_prefix' using \`--prefix',
exonerate-2.4.0/configure-1235-for instance \`--prefix=\$HOME'.
##############################################
exonerate-2.4.0/configure-1334-*)
exonerate-2.4.0/configure:1335: ac_dir_suffix=/`echo "$ac_dir" | sed 's,^\.[\\/],,'`
exonerate-2.4.0/configure-1336- # A ".." for each directory in $ac_dir_suffix.
exonerate-2.4.0/configure:1337: ac_top_builddir_sub=`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,/..,g;s,/,,'`
exonerate-2.4.0/configure-1338- case $ac_top_builddir_sub in
##############################################
exonerate-2.4.0/configure-1467- *\'*)
exonerate-2.4.0/configure:1468: ac_arg=`echo "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;;
exonerate-2.4.0/configure-1469- esac
##############################################
exonerate-2.4.0/configure-1553- case $ac_val in
exonerate-2.4.0/configure:1554: *\'\''*) ac_val=`echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
exonerate-2.4.0/configure-1555- esac
##############################################
exonerate-2.4.0/configure-1570- case $ac_val in
exonerate-2.4.0/configure:1571: *\'\''*) ac_val=`echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
exonerate-2.4.0/configure-1572- esac
##############################################
exonerate-2.4.0/configure-1678- set,)
exonerate-2.4.0/configure:1679: { echo "$as_me:$LINENO: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&5
exonerate-2.4.0/configure:1680:echo "$as_me: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&2;}
exonerate-2.4.0/configure-1681- ac_cache_corrupted=: ;;
##############################################
exonerate-2.4.0/configure-1700- case $ac_new_val in
exonerate-2.4.0/configure:1701: *\'*) ac_arg=$ac_var=`echo "$ac_new_val" | sed "s/'/'\\\\\\\\''/g"` ;;
exonerate-2.4.0/configure-1702- *) ac_arg=$ac_var=$ac_new_val ;;
##############################################
exonerate-2.4.0/configure-1863-if (
exonerate-2.4.0/configure:1864: set X `ls -Lt $srcdir/configure conftestfile 2> /dev/null`
exonerate-2.4.0/configure-1865- if test "$*" = "X"; then
exonerate-2.4.0/configure-1866- # -L didn't work.
exonerate-2.4.0/configure:1867: set X `ls -t $srcdir/configure conftestfile`
exonerate-2.4.0/configure-1868- fi
##############################################
exonerate-2.4.0/configure-1907-_ACEOF
exonerate-2.4.0/configure:1908:program_transform_name=`echo $program_transform_name | sed -f conftest.sed`
exonerate-2.4.0/configure-1909-rm -f conftest.sed
##############################################
exonerate-2.4.0/configure-1912-echo $ECHO_N "checking whether ${MAKE-make} sets \$(MAKE)... $ECHO_C" >&6; }
exonerate-2.4.0/configure:1913:set x ${MAKE-make}; ac_make=`echo "$2" | sed 's/+/p/g; s/[^a-zA-Z0-9_]/_/g'`
exonerate-2.4.0/configure-1914-if { as_var=ac_cv_prog_make_${ac_make}_set; eval "test \"\${$as_var+set}\" = set"; }; then
##############################################
exonerate-2.4.0/configure-1922-# GNU make sometimes prints "make[1]: Entering...", which would confuse us.
exonerate-2.4.0/configure:1923:case `${MAKE-make} -f conftest.make 2>/dev/null` in
exonerate-2.4.0/configure-1924- *@@@%%%=?*=@@@%%%*)
##############################################
exonerate-2.4.0/configure-1945-
exonerate-2.4.0/configure:1946:if test "`cd $srcdir && pwd`" != "`pwd`" && test -f $srcdir/config.status; then
exonerate-2.4.0/configure-1947- { { echo "$as_me:$LINENO: error: source directory already configured; run \"make distclean\" there first" >&5
##############################################
exonerate-2.4.0/configure-1962-
exonerate-2.4.0/configure:1963:missing_dir=`cd $ac_aux_dir && pwd`
exonerate-2.4.0/configure-1964-{ echo "$as_me:$LINENO: checking for working aclocal-${am__api_version}" >&5
##############################################
exonerate-2.4.0/configure-2353-echo "$as_me:$LINENO: checking for C compiler version" >&5
exonerate-2.4.0/configure:2354:ac_compiler=`set X $ac_compile; echo $2`
exonerate-2.4.0/configure-2355-{ (ac_try="$ac_compiler --version >&5"
##############################################
exonerate-2.4.0/configure-2407-echo $ECHO_N "checking for C compiler default output file name... $ECHO_C" >&6; }
exonerate-2.4.0/configure:2408:ac_link_default=`echo "$ac_link" | sed 's/ -o *conftest[^ ]*//'`
exonerate-2.4.0/configure-2409-#
##############################################
exonerate-2.4.0/configure-2455- then :; else
exonerate-2.4.0/configure:2456: ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
exonerate-2.4.0/configure-2457- fi
##############################################
exonerate-2.4.0/configure-2552- *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.o | *.obj ) ;;
exonerate-2.4.0/configure:2553: *.* ) ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
exonerate-2.4.0/configure-2554- break;;
##############################################
exonerate-2.4.0/configure-2607- *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf ) ;;
exonerate-2.4.0/configure:2608: *) ac_cv_objext=`expr "$ac_file" : '.*\.\(.*\)'`
exonerate-2.4.0/configure-2609- break;;
##############################################
exonerate-2.4.0/configure-2682-echo "${ECHO_T}$ac_cv_c_compiler_gnu" >&6; }
exonerate-2.4.0/configure:2683:GCC=`test $ac_compiler_gnu = yes && echo yes`
exonerate-2.4.0/configure-2684-ac_test_CFLAGS=${CFLAGS+set}
##############################################
exonerate-2.4.0/configure-3040-echo $ECHO_N "checking whether ${MAKE-make} sets \$(MAKE)... $ECHO_C" >&6; }
exonerate-2.4.0/configure:3041:set x ${MAKE-make}; ac_make=`echo "$2" | sed 's/+/p/g; s/[^a-zA-Z0-9_]/_/g'`
exonerate-2.4.0/configure-3042-if { as_var=ac_cv_prog_make_${ac_make}_set; eval "test \"\${$as_var+set}\" = set"; }; then
##############################################
exonerate-2.4.0/configure-3050-# GNU make sometimes prints "make[1]: Entering...", which would confuse us.
exonerate-2.4.0/configure:3051:case `${MAKE-make} -f conftest.make 2>/dev/null` in
exonerate-2.4.0/configure-3052- *@@@%%%=?*=@@@%%%*)
##############################################
exonerate-2.4.0/configure-3502- # Check for GNU $ac_path_GREP
exonerate-2.4.0/configure:3503:case `"$ac_path_GREP" --version 2>&1` in
exonerate-2.4.0/configure-3504-*GNU*)
##############################################
exonerate-2.4.0/configure-3516- diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break
exonerate-2.4.0/configure:3517: ac_count=`expr $ac_count + 1`
exonerate-2.4.0/configure-3518- if test $ac_count -gt ${ac_path_GREP_max-0}; then
##############################################
exonerate-2.4.0/configure-3584- # Check for GNU $ac_path_EGREP
exonerate-2.4.0/configure:3585:case `"$ac_path_EGREP" --version 2>&1` in
exonerate-2.4.0/configure-3586-*GNU*)
##############################################
exonerate-2.4.0/configure-3598- diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break
exonerate-2.4.0/configure:3599: ac_count=`expr $ac_count + 1`
exonerate-2.4.0/configure-3600- if test $ac_count -gt ${ac_path_EGREP_max-0}; then
##############################################
exonerate-2.4.0/configure-3827-do
exonerate-2.4.0/configure:3828:as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
exonerate-2.4.0/configure-3829-{ echo "$as_me:$LINENO: checking for $ac_header" >&5
##############################################
exonerate-2.4.0/configure-3870-fi
exonerate-2.4.0/configure:3871:ac_res=`eval echo '${'$as_ac_Header'}'`
exonerate-2.4.0/configure-3872- { echo "$as_me:$LINENO: result: $ac_res" >&5
exonerate-2.4.0/configure-3873-echo "${ECHO_T}$ac_res" >&6; }
exonerate-2.4.0/configure:3874:if test `eval echo '${'$as_ac_Header'}'` = yes; then
exonerate-2.4.0/configure-3875- cat >>confdefs.h <<_ACEOF
exonerate-2.4.0/configure:3876:#define `echo "HAVE_$ac_header" | $as_tr_cpp` 1
exonerate-2.4.0/configure-3877-_ACEOF
##############################################
exonerate-2.4.0/configure-3895-do
exonerate-2.4.0/configure:3896:as_ac_Header=`echo "ac_cv_header_$ac_header" | $as_tr_sh`
exonerate-2.4.0/configure-3897-if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
##############################################
exonerate-2.4.0/configure-3902-fi
exonerate-2.4.0/configure:3903:ac_res=`eval echo '${'$as_ac_Header'}'`
exonerate-2.4.0/configure-3904- { echo "$as_me:$LINENO: result: $ac_res" >&5
##############################################
exonerate-2.4.0/configure-4018-fi
exonerate-2.4.0/configure:4019:ac_res=`eval echo '${'$as_ac_Header'}'`
exonerate-2.4.0/configure-4020- { echo "$as_me:$LINENO: result: $ac_res" >&5
##############################################
exonerate-2.4.0/configure-4023-fi
exonerate-2.4.0/configure:4024:if test `eval echo '${'$as_ac_Header'}'` = yes; then
exonerate-2.4.0/configure-4025- cat >>confdefs.h <<_ACEOF
exonerate-2.4.0/configure:4026:#define `echo "HAVE_$ac_header" | $as_tr_cpp` 1
exonerate-2.4.0/configure-4027-_ACEOF
##############################################
exonerate-2.4.0/configure-4047-test "x$ac_build_alias" = x &&
exonerate-2.4.0/configure:4048: ac_build_alias=`$SHELL "$ac_aux_dir/config.guess"`
exonerate-2.4.0/configure-4049-test "x$ac_build_alias" = x &&
##############################################
exonerate-2.4.0/configure-4052- { (exit 1); exit 1; }; }
exonerate-2.4.0/configure:4053:ac_cv_build=`$SHELL "$ac_aux_dir/config.sub" $ac_build_alias` ||
exonerate-2.4.0/configure-4054- { { echo "$as_me:$LINENO: error: $SHELL $ac_aux_dir/config.sub $ac_build_alias failed" >&5
##############################################
exonerate-2.4.0/configure-4077-IFS=$ac_save_IFS
exonerate-2.4.0/configure:4078:case $build_os in *\ *) build_os=`echo "$build_os" | sed 's/ /-/g'`;; esac
exonerate-2.4.0/configure-4079-
##############################################
exonerate-2.4.0/configure-4088-else
exonerate-2.4.0/configure:4089: ac_cv_host=`$SHELL "$ac_aux_dir/config.sub" $host_alias` ||
exonerate-2.4.0/configure-4090- { { echo "$as_me:$LINENO: error: $SHELL $ac_aux_dir/config.sub $host_alias failed" >&5
##############################################
exonerate-2.4.0/configure-4114-IFS=$ac_save_IFS
exonerate-2.4.0/configure:4115:case $host_os in *\ *) host_os=`echo "$host_os" | sed 's/ /-/g'`;; esac
exonerate-2.4.0/configure-4116-
##############################################
exonerate-2.4.0/configure-4704-'
exonerate-2.4.0/configure:4705:DEFS=`sed -n "$ac_script" confdefs.h`
exonerate-2.4.0/configure-4706-
##############################################
exonerate-2.4.0/configure-4712- ac_script='s/\$U\././;s/\.o$//;s/\.obj$//'
exonerate-2.4.0/configure:4713: ac_i=`echo "$ac_i" | sed "$ac_script"`
exonerate-2.4.0/configure-4714- # 2. Prepend LIBOBJDIR. When used with automake>=1.10 LIBOBJDIR
##############################################
exonerate-2.4.0/configure-4842-do
exonerate-2.4.0/configure:4843: if (set +x; test -z "`(eval $as_var=C; export $as_var) 2>&1`"); then
exonerate-2.4.0/configure-4844- eval $as_var=C; export $as_var
##############################################
exonerate-2.4.0/configure-4892- test "x$as_lineno_1" != "x$as_lineno_2" &&
exonerate-2.4.0/configure:4893: test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2" || {
exonerate-2.4.0/configure-4894-
##############################################
exonerate-2.4.0/configure-5003- esac;
exonerate-2.4.0/configure:5004: case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in
exonerate-2.4.0/configure-5005- ???[sx]*):;;*)false;;esac;fi
##############################################
exonerate-2.4.0/configure-5068-configured by $0, generated by GNU Autoconf 2.61,
exonerate-2.4.0/configure:5069: with options \\"`echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`\\"
exonerate-2.4.0/configure-5070-
##############################################
exonerate-2.4.0/configure-5087- --*=*)
exonerate-2.4.0/configure:5088: ac_option=`expr "X$1" : 'X\([^=]*\)='`
exonerate-2.4.0/configure:5089: ac_optarg=`expr "X$1" : 'X[^=]*=\(.*\)'`
exonerate-2.4.0/configure-5090- ac_shift=:
##############################################
exonerate-2.4.0/configure-5329-
exonerate-2.4.0/configure:5330: if test `sed -n "s/.*$ac_delim\$/X/p" conf$$subs.sed | grep -c X` = 78; then
exonerate-2.4.0/configure-5331- break
##############################################
exonerate-2.4.0/configure-5340-
exonerate-2.4.0/configure:5341:ac_eof=`sed -n '/^CEOF[0-9]*$/s/CEOF/0/p' conf$$subs.sed`
exonerate-2.4.0/configure-5342-if test -n "$ac_eof"; then
exonerate-2.4.0/configure:5343: ac_eof=`echo "$ac_eof" | sort -nru | sed 1q`
exonerate-2.4.0/configure:5344: ac_eof=`expr $ac_eof + 1`
exonerate-2.4.0/configure-5345-fi
##############################################
exonerate-2.4.0/configure-5478- case $as_dir in #(
exonerate-2.4.0/configure:5479: *\'*) as_qdir=`echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #(
exonerate-2.4.0/configure-5480- *) as_qdir=$as_dir;;
##############################################
exonerate-2.4.0/configure-5516-*)
exonerate-2.4.0/configure:5517: ac_dir_suffix=/`echo "$ac_dir" | sed 's,^\.[\\/],,'`
exonerate-2.4.0/configure-5518- # A ".." for each directory in $ac_dir_suffix.
exonerate-2.4.0/configure:5519: ac_top_builddir_sub=`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,/..,g;s,/,,'`
exonerate-2.4.0/configure-5520- case $ac_top_builddir_sub in
##############################################
exonerate-2.4.0/configure-5589-
exonerate-2.4.0/configure:5590:# Neutralize VPATH when `$srcdir' = `.'.
exonerate-2.4.0/configure-5591-# Shell code in configure.ac might set extrasub.
##############################################
exonerate-2.4.0/configure-5613-test -z "$ac_datarootdir_hack$ac_datarootdir_seen" &&
exonerate-2.4.0/configure:5614: { ac_out=`sed -n '/\${datarootdir}/p' "$tmp/out"`; test -n "$ac_out"; } &&
exonerate-2.4.0/configure:5615: { ac_out=`sed -n '/^[ ]*datarootdir[ ]*:*=/p' "$tmp/out"`; test -z "$ac_out"; } &&
exonerate-2.4.0/configure-5616- { echo "$as_me:$LINENO: WARNING: $ac_file contains a reference to the variable \`datarootdir'
##############################################
exonerate-2.4.0/install-sh-85-
exonerate-2.4.0/install-sh:86: -t=*) transformarg=`echo $1 | sed 's/-t=//'`
exonerate-2.4.0/install-sh-87- shift
##############################################
exonerate-2.4.0/install-sh-89-
exonerate-2.4.0/install-sh:90: -b=*) transformbasename=`echo $1 | sed 's/-b=//'`
exonerate-2.4.0/install-sh-91- shift
##############################################
exonerate-2.4.0/install-sh-151- then
exonerate-2.4.0/install-sh:152: dst="$dst"/`basename $src`
exonerate-2.4.0/install-sh-153- else
##############################################
exonerate-2.4.0/install-sh-158-## this sed command emulates the dirname command
exonerate-2.4.0/install-sh:159:dstdir=`echo $dst | sed -e 's,[^/]*$,,;s,/$,,;s,^$,.,'`
exonerate-2.4.0/install-sh-160-
##############################################
exonerate-2.4.0/install-sh-172-IFS='%'
exonerate-2.4.0/install-sh:173:set - `echo ${dstdir} | sed -e 's@/@%@g' -e 's@^%@/@'`
exonerate-2.4.0/install-sh-174-IFS="${oIFS}"
##############################################
exonerate-2.4.0/install-sh-206- then
exonerate-2.4.0/install-sh:207: dstfile=`basename $dst`
exonerate-2.4.0/install-sh-208- else
##############################################
exonerate-2.4.0/install-sh-216- then
exonerate-2.4.0/install-sh:217: dstfile=`basename $dst`
exonerate-2.4.0/install-sh-218- else
##############################################
exonerate-2.4.0/missing-119- *.y)
exonerate-2.4.0/missing:120: SRCFILE=`echo "$LASTARG" | sed 's/y$/c/'`
exonerate-2.4.0/missing-121- if [ -f "$SRCFILE" ]; then
##############################################
exonerate-2.4.0/missing-123- fi
exonerate-2.4.0/missing:124: SRCFILE=`echo "$LASTARG" | sed 's/y$/h/'`
exonerate-2.4.0/missing-125- if [ -f "$SRCFILE" ]; then
##############################################
exonerate-2.4.0/missing-149- *.l)
exonerate-2.4.0/missing:150: SRCFILE=`echo "$LASTARG" | sed 's/l$/c/'`
exonerate-2.4.0/missing-151- if [ -f "$SRCFILE" ]; then
##############################################
exonerate-2.4.0/missing-169- the \`GNU make' package. Grab either from any GNU archive site."
exonerate-2.4.0/missing:170: file=`echo "$*" | sed -n 's/.*-o \([^ ]*\).*/\1/p'`
exonerate-2.4.0/missing-171- if test -z "$file"; then
exonerate-2.4.0/missing:172: file=`echo "$*" | sed 's/.* \([^ ]*\) *$/\1/'`
exonerate-2.4.0/missing:173: file=`sed -n '/^@setfilename/ { s/.* \([^ ]*\) *$/\1/; p; q; }' $file`
exonerate-2.4.0/missing-174- fi
##############################################
exonerate-2.4.0/mkinstalldirs-12-do
exonerate-2.4.0/mkinstalldirs:13: set fnord `echo ":$file" | sed -ne 's/^:\//#/;s/^://;s/\// /g;s/^#/\//;p'`
exonerate-2.4.0/mkinstalldirs-14- shift
##############################################
exonerate-2.4.0/doc/Makefile.in-117- dot_seen=no; \
exonerate-2.4.0/doc/Makefile.in:118: target=`echo $@ | sed s/-recursive//`; \
exonerate-2.4.0/doc/Makefile.in-119- list='$(SUBDIRS)'; for subdir in $$list; do \
##############################################
exonerate-2.4.0/doc/Makefile.in-142- test "$$dot_seen" = "no" && rev=". $$rev"; \
exonerate-2.4.0/doc/Makefile.in:143: target=`echo $@ | sed s/-recursive//`; \
exonerate-2.4.0/doc/Makefile.in-144- for subdir in $$rev; do \
##############################################
exonerate-2.4.0/doc/man/Makefile.in-117- dot_seen=no; \
exonerate-2.4.0/doc/man/Makefile.in:118: target=`echo $@ | sed s/-recursive//`; \
exonerate-2.4.0/doc/man/Makefile.in-119- list='$(SUBDIRS)'; for subdir in $$list; do \
##############################################
exonerate-2.4.0/doc/man/Makefile.in-142- test "$$dot_seen" = "no" && rev=". $$rev"; \
exonerate-2.4.0/doc/man/Makefile.in:143: target=`echo $@ | sed s/-recursive//`; \
exonerate-2.4.0/doc/man/Makefile.in-144- for subdir in $$rev; do \
##############################################
exonerate-2.4.0/doc/man/man1/Makefile.in-119- else file=$$i; fi; \
exonerate-2.4.0/doc/man/man1/Makefile.in:120: ext=`echo $$i | sed -e 's/^.*\\.//'`; \
exonerate-2.4.0/doc/man/man1/Makefile.in:121: inst=`echo $$i | sed -e 's/\\.[0-9a-z]*$$//'`; \
exonerate-2.4.0/doc/man/man1/Makefile.in:122: inst=`echo $$inst | sed '$(transform)'`.$$ext; \
exonerate-2.4.0/doc/man/man1/Makefile.in-123- echo " $(INSTALL_DATA) $$file $(DESTDIR)$(man1dir)/$$inst"; \
##############################################
exonerate-2.4.0/doc/man/man1/Makefile.in-134- for i in $$list; do \
exonerate-2.4.0/doc/man/man1/Makefile.in:135: ext=`echo $$i | sed -e 's/^.*\\.//'`; \
exonerate-2.4.0/doc/man/man1/Makefile.in:136: inst=`echo $$i | sed -e 's/\\.[0-9a-z]*$$//'`; \
exonerate-2.4.0/doc/man/man1/Makefile.in:137: inst=`echo $$inst | sed '$(transform)'`.$$ext; \
exonerate-2.4.0/doc/man/man1/Makefile.in-138- echo " rm -f $(DESTDIR)$(man1dir)/$$inst"; \
##############################################
exonerate-2.4.0/src/Makefile.in-118- dot_seen=no; \
exonerate-2.4.0/src/Makefile.in:119: target=`echo $@ | sed s/-recursive//`; \
exonerate-2.4.0/src/Makefile.in-120- list='$(SUBDIRS)'; for subdir in $$list; do \
##############################################
exonerate-2.4.0/src/Makefile.in-143- test "$$dot_seen" = "no" && rev=". $$rev"; \
exonerate-2.4.0/src/Makefile.in:144: target=`echo $@ | sed s/-recursive//`; \
exonerate-2.4.0/src/Makefile.in-145- for subdir in $$rev; do \
##############################################
exonerate-2.4.0/src/struct/Makefile.in-331- if $(TESTS_ENVIRONMENT) $$dir/$$tst; then \
exonerate-2.4.0/src/struct/Makefile.in:332: all=`expr $$all + 1`; \
exonerate-2.4.0/src/struct/Makefile.in-333- echo "PASS: $$tst"; \
exonerate-2.4.0/src/struct/Makefile.in-334- elif test $$? -ne 77; then \
exonerate-2.4.0/src/struct/Makefile.in:335: all=`expr $$all + 1`; \
exonerate-2.4.0/src/struct/Makefile.in:336: failed=`expr $$failed + 1`; \
exonerate-2.4.0/src/struct/Makefile.in-337- echo "FAIL: $$tst"; \
##############################################
exonerate-2.4.0/src/struct/Makefile.in-344- fi; \
exonerate-2.4.0/src/struct/Makefile.in:345: dashes=`echo "$$banner" | sed s/./=/g`; \
exonerate-2.4.0/src/struct/Makefile.in-346- echo "$$dashes"; \
##############################################
exonerate-2.4.0/src/general/Makefile.in-266- if $(TESTS_ENVIRONMENT) $$dir/$$tst; then \
exonerate-2.4.0/src/general/Makefile.in:267: all=`expr $$all + 1`; \
exonerate-2.4.0/src/general/Makefile.in-268- echo "PASS: $$tst"; \
exonerate-2.4.0/src/general/Makefile.in-269- elif test $$? -ne 77; then \
exonerate-2.4.0/src/general/Makefile.in:270: all=`expr $$all + 1`; \
exonerate-2.4.0/src/general/Makefile.in:271: failed=`expr $$failed + 1`; \
exonerate-2.4.0/src/general/Makefile.in-272- echo "FAIL: $$tst"; \
##############################################
exonerate-2.4.0/src/general/Makefile.in-279- fi; \
exonerate-2.4.0/src/general/Makefile.in:280: dashes=`echo "$$banner" | sed s/./=/g`; \
exonerate-2.4.0/src/general/Makefile.in-281- echo "$$dashes"; \
##############################################
exonerate-2.4.0/src/sequence/Makefile.in-278- if $(TESTS_ENVIRONMENT) $$dir/$$tst; then \
exonerate-2.4.0/src/sequence/Makefile.in:279: all=`expr $$all + 1`; \
exonerate-2.4.0/src/sequence/Makefile.in-280- echo "PASS: $$tst"; \
exonerate-2.4.0/src/sequence/Makefile.in-281- elif test $$? -ne 77; then \
exonerate-2.4.0/src/sequence/Makefile.in:282: all=`expr $$all + 1`; \
exonerate-2.4.0/src/sequence/Makefile.in:283: failed=`expr $$failed + 1`; \
exonerate-2.4.0/src/sequence/Makefile.in-284- echo "FAIL: $$tst"; \
##############################################
exonerate-2.4.0/src/sequence/Makefile.in-291- fi; \
exonerate-2.4.0/src/sequence/Makefile.in:292: dashes=`echo "$$banner" | sed s/./=/g`; \
exonerate-2.4.0/src/sequence/Makefile.in-293- echo "$$dashes"; \
##############################################
exonerate-2.4.0/src/comparison/Makefile.in-337- if $(TESTS_ENVIRONMENT) $$dir/$$tst; then \
exonerate-2.4.0/src/comparison/Makefile.in:338: all=`expr $$all + 1`; \
exonerate-2.4.0/src/comparison/Makefile.in-339- echo "PASS: $$tst"; \
exonerate-2.4.0/src/comparison/Makefile.in-340- elif test $$? -ne 77; then \
exonerate-2.4.0/src/comparison/Makefile.in:341: all=`expr $$all + 1`; \
exonerate-2.4.0/src/comparison/Makefile.in:342: failed=`expr $$failed + 1`; \
exonerate-2.4.0/src/comparison/Makefile.in-343- echo "FAIL: $$tst"; \
##############################################
exonerate-2.4.0/src/comparison/Makefile.in-350- fi; \
exonerate-2.4.0/src/comparison/Makefile.in:351: dashes=`echo "$$banner" | sed s/./=/g`; \
exonerate-2.4.0/src/comparison/Makefile.in-352- echo "$$dashes"; \
##############################################
exonerate-2.4.0/src/database/Makefile.in-307- if $(TESTS_ENVIRONMENT) $$dir/$$tst; then \
exonerate-2.4.0/src/database/Makefile.in:308: all=`expr $$all + 1`; \
exonerate-2.4.0/src/database/Makefile.in-309- echo "PASS: $$tst"; \
exonerate-2.4.0/src/database/Makefile.in-310- elif test $$? -ne 77; then \
exonerate-2.4.0/src/database/Makefile.in:311: all=`expr $$all + 1`; \
exonerate-2.4.0/src/database/Makefile.in:312: failed=`expr $$failed + 1`; \
exonerate-2.4.0/src/database/Makefile.in-313- echo "FAIL: $$tst"; \
##############################################
exonerate-2.4.0/src/database/Makefile.in-320- fi; \
exonerate-2.4.0/src/database/Makefile.in:321: dashes=`echo "$$banner" | sed s/./=/g`; \
exonerate-2.4.0/src/database/Makefile.in-322- echo "$$dashes"; \
##############################################
exonerate-2.4.0/src/c4/Makefile.in-379- if $(TESTS_ENVIRONMENT) $$dir/$$tst; then \
exonerate-2.4.0/src/c4/Makefile.in:380: all=`expr $$all + 1`; \
exonerate-2.4.0/src/c4/Makefile.in-381- echo "PASS: $$tst"; \
exonerate-2.4.0/src/c4/Makefile.in-382- elif test $$? -ne 77; then \
exonerate-2.4.0/src/c4/Makefile.in:383: all=`expr $$all + 1`; \
exonerate-2.4.0/src/c4/Makefile.in:384: failed=`expr $$failed + 1`; \
exonerate-2.4.0/src/c4/Makefile.in-385- echo "FAIL: $$tst"; \
##############################################
exonerate-2.4.0/src/c4/Makefile.in-392- fi; \
exonerate-2.4.0/src/c4/Makefile.in:393: dashes=`echo "$$banner" | sed s/./=/g`; \
exonerate-2.4.0/src/c4/Makefile.in-394- echo "$$dashes"; \
##############################################
exonerate-2.4.0/src/bsdp/Makefile.in-315- if $(TESTS_ENVIRONMENT) $$dir/$$tst; then \
exonerate-2.4.0/src/bsdp/Makefile.in:316: all=`expr $$all + 1`; \
exonerate-2.4.0/src/bsdp/Makefile.in-317- echo "PASS: $$tst"; \
exonerate-2.4.0/src/bsdp/Makefile.in-318- elif test $$? -ne 77; then \
exonerate-2.4.0/src/bsdp/Makefile.in:319: all=`expr $$all + 1`; \
exonerate-2.4.0/src/bsdp/Makefile.in:320: failed=`expr $$failed + 1`; \
exonerate-2.4.0/src/bsdp/Makefile.in-321- echo "FAIL: $$tst"; \
##############################################
exonerate-2.4.0/src/bsdp/Makefile.in-328- fi; \
exonerate-2.4.0/src/bsdp/Makefile.in:329: dashes=`echo "$$banner" | sed s/./=/g`; \
exonerate-2.4.0/src/bsdp/Makefile.in-330- echo "$$dashes"; \
##############################################
exonerate-2.4.0/src/sdp/Makefile.in-326- if $(TESTS_ENVIRONMENT) $$dir/$$tst; then \
exonerate-2.4.0/src/sdp/Makefile.in:327: all=`expr $$all + 1`; \
exonerate-2.4.0/src/sdp/Makefile.in-328- echo "PASS: $$tst"; \
exonerate-2.4.0/src/sdp/Makefile.in-329- elif test $$? -ne 77; then \
exonerate-2.4.0/src/sdp/Makefile.in:330: all=`expr $$all + 1`; \
exonerate-2.4.0/src/sdp/Makefile.in:331: failed=`expr $$failed + 1`; \
exonerate-2.4.0/src/sdp/Makefile.in-332- echo "FAIL: $$tst"; \
##############################################
exonerate-2.4.0/src/sdp/Makefile.in-339- fi; \
exonerate-2.4.0/src/sdp/Makefile.in:340: dashes=`echo "$$banner" | sed s/./=/g`; \
exonerate-2.4.0/src/sdp/Makefile.in-341- echo "$$dashes"; \
##############################################
exonerate-2.4.0/src/model/Makefile.in-684- if $(TESTS_ENVIRONMENT) $$dir/$$tst; then \
exonerate-2.4.0/src/model/Makefile.in:685: all=`expr $$all + 1`; \
exonerate-2.4.0/src/model/Makefile.in-686- echo "PASS: $$tst"; \
exonerate-2.4.0/src/model/Makefile.in-687- elif test $$? -ne 77; then \
exonerate-2.4.0/src/model/Makefile.in:688: all=`expr $$all + 1`; \
exonerate-2.4.0/src/model/Makefile.in:689: failed=`expr $$failed + 1`; \
exonerate-2.4.0/src/model/Makefile.in-690- echo "FAIL: $$tst"; \
##############################################
exonerate-2.4.0/src/model/Makefile.in-697- fi; \
exonerate-2.4.0/src/model/Makefile.in:698: dashes=`echo "$$banner" | sed s/./=/g`; \
exonerate-2.4.0/src/model/Makefile.in-699- echo "$$dashes"; \
##############################################
exonerate-2.4.0/src/hub/Makefile.in-336- if $(TESTS_ENVIRONMENT) $$dir/$$tst; then \
exonerate-2.4.0/src/hub/Makefile.in:337: all=`expr $$all + 1`; \
exonerate-2.4.0/src/hub/Makefile.in-338- echo "PASS: $$tst"; \
exonerate-2.4.0/src/hub/Makefile.in-339- elif test $$? -ne 77; then \
exonerate-2.4.0/src/hub/Makefile.in:340: all=`expr $$all + 1`; \
exonerate-2.4.0/src/hub/Makefile.in:341: failed=`expr $$failed + 1`; \
exonerate-2.4.0/src/hub/Makefile.in-342- echo "FAIL: $$tst"; \
##############################################
exonerate-2.4.0/src/hub/Makefile.in-349- fi; \
exonerate-2.4.0/src/hub/Makefile.in:350: dashes=`echo "$$banner" | sed s/./=/g`; \
exonerate-2.4.0/src/hub/Makefile.in-351- echo "$$dashes"; \
##############################################
exonerate-2.4.0/src/program/Makefile.in-205- if test -f $$p; then \
exonerate-2.4.0/src/program/Makefile.in:206: echo " $(INSTALL_PROGRAM) $$p $(DESTDIR)$(bindir)/`echo $$p|sed 's/$(EXEEXT)$$//'|sed '$(transform)'|sed 's/$$/$(EXEEXT)/'`"; \
exonerate-2.4.0/src/program/Makefile.in:207: $(INSTALL_PROGRAM) $$p $(DESTDIR)$(bindir)/`echo $$p|sed 's/$(EXEEXT)$$//'|sed '$(transform)'|sed 's/$$/$(EXEEXT)/'`; \
exonerate-2.4.0/src/program/Makefile.in-208- else :; fi; \
##############################################
exonerate-2.4.0/src/program/Makefile.in-213- list='$(bin_PROGRAMS)'; for p in $$list; do \
exonerate-2.4.0/src/program/Makefile.in:214: rm -f $(DESTDIR)$(bindir)/`echo $$p|sed 's/$(EXEEXT)$$//'|sed '$(transform)'|sed 's/$$/$(EXEEXT)/'`; \
exonerate-2.4.0/src/program/Makefile.in-215- done
##############################################
exonerate-2.4.0/src/util/Makefile.in-500- if test -f $$p; then \
exonerate-2.4.0/src/util/Makefile.in:501: echo " $(INSTALL_PROGRAM) $$p $(DESTDIR)$(bindir)/`echo $$p|sed 's/$(EXEEXT)$$//'|sed '$(transform)'|sed 's/$$/$(EXEEXT)/'`"; \
exonerate-2.4.0/src/util/Makefile.in:502: $(INSTALL_PROGRAM) $$p $(DESTDIR)$(bindir)/`echo $$p|sed 's/$(EXEEXT)$$//'|sed '$(transform)'|sed 's/$$/$(EXEEXT)/'`; \
exonerate-2.4.0/src/util/Makefile.in-503- else :; fi; \
##############################################
exonerate-2.4.0/src/util/Makefile.in-508- list='$(bin_PROGRAMS)'; for p in $$list; do \
exonerate-2.4.0/src/util/Makefile.in:509: rm -f $(DESTDIR)$(bindir)/`echo $$p|sed 's/$(EXEEXT)$$//'|sed '$(transform)'|sed 's/$$/$(EXEEXT)/'`; \
exonerate-2.4.0/src/util/Makefile.in-510- done
##############################################
exonerate-2.4.0/test/Makefile.in-117- dot_seen=no; \
exonerate-2.4.0/test/Makefile.in:118: target=`echo $@ | sed s/-recursive//`; \
exonerate-2.4.0/test/Makefile.in-119- list='$(SUBDIRS)'; for subdir in $$list; do \
##############################################
exonerate-2.4.0/test/Makefile.in-142- test "$$dot_seen" = "no" && rev=". $$rev"; \
exonerate-2.4.0/test/Makefile.in:143: target=`echo $@ | sed s/-recursive//`; \
exonerate-2.4.0/test/Makefile.in-144- for subdir in $$rev; do \
##############################################
exonerate-2.4.0/test/data/Makefile.in-117- dot_seen=no; \
exonerate-2.4.0/test/data/Makefile.in:118: target=`echo $@ | sed s/-recursive//`; \
exonerate-2.4.0/test/data/Makefile.in-119- list='$(SUBDIRS)'; for subdir in $$list; do \
##############################################
exonerate-2.4.0/test/data/Makefile.in-142- test "$$dot_seen" = "no" && rev=". $$rev"; \
exonerate-2.4.0/test/data/Makefile.in:143: target=`echo $@ | sed s/-recursive//`; \
exonerate-2.4.0/test/data/Makefile.in-144- for subdir in $$rev; do \
##############################################
exonerate-2.4.0/test/exonerate/Makefile.in-132- if $(TESTS_ENVIRONMENT) $$dir/$$tst; then \
exonerate-2.4.0/test/exonerate/Makefile.in:133: all=`expr $$all + 1`; \
exonerate-2.4.0/test/exonerate/Makefile.in-134- echo "PASS: $$tst"; \
exonerate-2.4.0/test/exonerate/Makefile.in-135- elif test $$? -ne 77; then \
exonerate-2.4.0/test/exonerate/Makefile.in:136: all=`expr $$all + 1`; \
exonerate-2.4.0/test/exonerate/Makefile.in:137: failed=`expr $$failed + 1`; \
exonerate-2.4.0/test/exonerate/Makefile.in-138- echo "FAIL: $$tst"; \
##############################################
exonerate-2.4.0/test/exonerate/Makefile.in-145- fi; \
exonerate-2.4.0/test/exonerate/Makefile.in:146: dashes=`echo "$$banner" | sed s/./=/g`; \
exonerate-2.4.0/test/exonerate/Makefile.in-147- echo "$$dashes"; \
##############################################
exonerate-2.4.0/test/exonerate/exonerate.simple.test.sh-23-
exonerate-2.4.0/test/exonerate/exonerate.simple.test.sh:24:SCORE=`grep '^vulgar:' $OUTPUTFILE | cut -d' ' -f10`
exonerate-2.4.0/test/exonerate/exonerate.simple.test.sh-25-if [ $SCORE -eq 10875 ]
##############################################
exonerate-2.4.0/test/ipcress/Makefile.in-132- if $(TESTS_ENVIRONMENT) $$dir/$$tst; then \
exonerate-2.4.0/test/ipcress/Makefile.in:133: all=`expr $$all + 1`; \
exonerate-2.4.0/test/ipcress/Makefile.in-134- echo "PASS: $$tst"; \
exonerate-2.4.0/test/ipcress/Makefile.in-135- elif test $$? -ne 77; then \
exonerate-2.4.0/test/ipcress/Makefile.in:136: all=`expr $$all + 1`; \
exonerate-2.4.0/test/ipcress/Makefile.in:137: failed=`expr $$failed + 1`; \
exonerate-2.4.0/test/ipcress/Makefile.in-138- echo "FAIL: $$tst"; \
##############################################
exonerate-2.4.0/test/ipcress/Makefile.in-145- fi; \
exonerate-2.4.0/test/ipcress/Makefile.in:146: dashes=`echo "$$banner" | sed s/./=/g`; \
exonerate-2.4.0/test/ipcress/Makefile.in-147- echo "$$dashes"; \
##############################################
exonerate-2.4.0/test/ipcress/ipcress.simple.test.sh-27-
exonerate-2.4.0/test/ipcress/ipcress.simple.test.sh:28:TOTAL_PRODUCTS=`grep -c '^ipcress:' $OUTPUTFILE`
exonerate-2.4.0/test/ipcress/ipcress.simple.test.sh-29-if [ $TOTAL_PRODUCTS -eq 1 ]
##############################################
exonerate-2.4.0/test/util/Makefile.in-133- if $(TESTS_ENVIRONMENT) $$dir/$$tst; then \
exonerate-2.4.0/test/util/Makefile.in:134: all=`expr $$all + 1`; \
exonerate-2.4.0/test/util/Makefile.in-135- echo "PASS: $$tst"; \
exonerate-2.4.0/test/util/Makefile.in-136- elif test $$? -ne 77; then \
exonerate-2.4.0/test/util/Makefile.in:137: all=`expr $$all + 1`; \
exonerate-2.4.0/test/util/Makefile.in:138: failed=`expr $$failed + 1`; \
exonerate-2.4.0/test/util/Makefile.in-139- echo "FAIL: $$tst"; \
##############################################
exonerate-2.4.0/test/util/Makefile.in-146- fi; \
exonerate-2.4.0/test/util/Makefile.in:147: dashes=`echo "$$banner" | sed s/./=/g`; \
exonerate-2.4.0/test/util/Makefile.in-148- echo "$$dashes"; \
##############################################
exonerate-2.4.0/test/util/fastaexpode.test.sh-41-
exonerate-2.4.0/test/util/fastaexpode.test.sh:42:TOTALINPUT=`grep -c '^>' $INPUTFILE`
exonerate-2.4.0/test/util/fastaexpode.test.sh:43:TOTALOUTPUT=`ls -1 ${OUTPUTDIR}/*.fa | wc -l`
exonerate-2.4.0/test/util/fastaexpode.test.sh-44-if [ $TOTALINPUT -eq $TOTALOUTPUT ]
##############################################
exonerate-2.4.0/test/util/fastanrdb.test.sh-31-
exonerate-2.4.0/test/util/fastanrdb.test.sh:32:TOTALINPUT=`ls -1 ${INPUTDIR}/*.fasta | wc -l`
exonerate-2.4.0/test/util/fastanrdb.test.sh:33:TOTALOUTPUT=`grep -c '^>' $OUTPUTFILE`
exonerate-2.4.0/test/util/fastanrdb.test.sh-34-if [ $TOTALINPUT -eq $TOTALOUTPUT ]
##############################################
exonerate-2.4.0/test/util/fastaoverlap.test.sh-21-
exonerate-2.4.0/test/util/fastaoverlap.test.sh:22:TOTAL_SEQS=`grep -c '^>' $OUTPUTFILE`
exonerate-2.4.0/test/util/fastaoverlap.test.sh-23-if [ $TOTAL_SEQS -eq 15 ]
##############################################
exonerate-2.4.0/test/util/fastaremove.test.sh-15-
exonerate-2.4.0/test/util/fastaremove.test.sh:16:HAVE_CALM_HUMAN=`grep -c '^>CALM_HUMAN' $INPUTFILE`
exonerate-2.4.0/test/util/fastaremove.test.sh-17-if [ $HAVE_CALM_HUMAN -eq 1 ]
##############################################
exonerate-2.4.0/test/util/fastaremove.test.sh-26-
exonerate-2.4.0/test/util/fastaremove.test.sh:27:HAVE_CALM_HUMAN=`grep -c '^>CALM_HUMAN' $OUTPUTFILE`
exonerate-2.4.0/test/util/fastaremove.test.sh-28-if [ $HAVE_CALM_HUMAN -eq 0 ]
##############################################
exonerate-2.4.0/test/util/fastasplit.test.sh-33-
exonerate-2.4.0/test/util/fastasplit.test.sh:34:TOTALFILES=`ls -1 $SPLITDIR | wc -l`
exonerate-2.4.0/test/util/fastasplit.test.sh-35-if [ $TOTALFILES -eq 2 ]
##############################################
exonerate-2.4.0/test/util/fastasplit.test.sh-44- TOTAL_LEN=0
exonerate-2.4.0/test/util/fastasplit.test.sh:45: for LEN in `$FASTALENGTH $1 | cut -d' ' -f1`
exonerate-2.4.0/test/util/fastasplit.test.sh-46- do
exonerate-2.4.0/test/util/fastasplit.test.sh:47: TOTAL_LEN=`expr $TOTAL_LEN + $LEN`
exonerate-2.4.0/test/util/fastasplit.test.sh-48- done
##############################################
exonerate-2.4.0/test/util/fastasplit.test.sh-53-# check total lengths
exonerate-2.4.0/test/util/fastasplit.test.sh:54:INPUT_LEN=`total_seq_len $INPUTFILE`
exonerate-2.4.0/test/util/fastasplit.test.sh-55-echo Input len $INPUT_LEN
exonerate-2.4.0/test/util/fastasplit.test.sh:56:OUTPUT_LEN_0=`total_seq_len $OUTPUTFILE_0`
exonerate-2.4.0/test/util/fastasplit.test.sh:57:OUTPUT_LEN_1=`total_seq_len $OUTPUTFILE_1`
exonerate-2.4.0/test/util/fastasplit.test.sh:58:OUTPUT_LEN=`expr $OUTPUT_LEN_0 + $OUTPUT_LEN_1`
exonerate-2.4.0/test/util/fastasplit.test.sh-59-echo Output len $OUTPUT_LEN
##############################################
exonerate-2.4.0/test/util/fastasubseq.test.sh-6-
exonerate-2.4.0/test/util/fastasubseq.test.sh:7:SUBSEQ=`$PROGRAM $INPUTFILE --start 10 --length 10 | tail -1`
exonerate-2.4.0/test/util/fastasubseq.test.sh-8-if [ $SUBSEQ = "AEFKEAFSLF" ]
##############################################
exonerate-2.4.0/test/util/fastavalidcds.test.sh-41-
exonerate-2.4.0/test/util/fastavalidcds.test.sh:42:TOTAL=`grep -c '^>' $OUTPUTFILE`
exonerate-2.4.0/test/util/fastavalidcds.test.sh-43-if [ $TOTAL -eq 1 ]
##############################################
exonerate-2.4.0/debian/patches/cross.patch-26-- glib_libs=`pkg-config --libs glib-2.0`
exonerate-2.4.0/debian/patches/cross.patch:27:+ glib_cflags=`$PKG_CONFIG --cflags glib-2.0`
exonerate-2.4.0/debian/patches/cross.patch:28:+ glib_libs=`$PKG_CONFIG --libs glib-2.0`
exonerate-2.4.0/debian/patches/cross.patch-29- CFLAGS="$CFLAGS $glib_cflags"
##############################################
exonerate-2.4.0/debian/patches/cross.patch-36-- g_thread_init_ldflags=`pkg-config --libs gthread-2.0`
exonerate-2.4.0/debian/patches/cross.patch:37:+ g_thread_init_ldflags=`$PKG_CONFIG --libs gthread-2.0`
exonerate-2.4.0/debian/patches/cross.patch-38- LDFLAGS="$LDFLAGS $g_thread_init_ldflags -lpthread"
##############################################
exonerate-2.4.0/debian/rules-34- find $(sampledir) \( -name "Makefile*" -o -name "*.log" -o -name "*.trs" \) -exec rm \{\} \;
exonerate-2.4.0/debian/rules:35: for testfile in `find $(sampledir) -name "*.sh"` ; do \
exonerate-2.4.0/debian/rules-36- sed -i -e "s#../../src/util/#/usr/bin/#" \
##############################################
exonerate-2.4.0/debian/tests/run-unit-test-6-if [ "$ADTTMP" = "" ] ; then
exonerate-2.4.0/debian/tests/run-unit-test:7: ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
exonerate-2.4.0/debian/tests/run-unit-test-8-fi
##############################################
exonerate-2.4.0/debian/tests/run-unit-test-13-
exonerate-2.4.0/debian/tests/run-unit-test:14:for testname in `find "$(pwd)" -name "*.sh"` ; do
exonerate-2.4.0/debian/tests/run-unit-test-15- echo ; \
##############################################
exonerate-2.4.0/configure.in-116- echo "Using GLIB-2"
exonerate-2.4.0/configure.in:117: glib_cflags=`$PKG_CONFIG --cflags glib-2.0`
exonerate-2.4.0/configure.in:118: glib_libs=`$PKG_CONFIG --libs glib-2.0`
exonerate-2.4.0/configure.in-119- CFLAGS="$CFLAGS $glib_cflags"
##############################################
exonerate-2.4.0/configure.in-301- # for g_thread_init()
exonerate-2.4.0/configure.in:302: g_thread_init_ldflags=`$PKG_CONFIG --libs gthread-2.0`
exonerate-2.4.0/configure.in-303- LDFLAGS="$LDFLAGS $g_thread_init_ldflags -lpthread"