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/ /_/ > | \// __ \| | / /_/ | | || |
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grep rough audit - static analysis tool
v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
gatb-core-1.4.2+dfsg/gatb-core/scripts/NewProject/NewProject.sh-192-done
gatb-core-1.4.2+dfsg/gatb-core/scripts/NewProject/NewProject.sh:193:shift `expr $OPTIND - 1`
gatb-core-1.4.2+dfsg/gatb-core/scripts/NewProject/NewProject.sh-194-
##############################################
gatb-core-1.4.2+dfsg/gatb-core/scripts/NewProject/NewProject.sh-213-# Check how this script is called to figure out how to handle GATB-Core dependency
gatb-core-1.4.2+dfsg/gatb-core/scripts/NewProject/NewProject.sh:214:ABS_PATH=`cd "$INSTALL_DIRECTORY"; pwd`
gatb-core-1.4.2+dfsg/gatb-core/scripts/NewProject/NewProject.sh-215-if [[ "$ABS_PATH" =~ "gatb-tools/tools" ]]; then
##############################################
gatb-core-1.4.2+dfsg/gatb-core/scripts/NewProject/package_tool.sh-66-done
gatb-core-1.4.2+dfsg/gatb-core/scripts/NewProject/package_tool.sh:67:shift `expr $OPTIND - 1`
gatb-core-1.4.2+dfsg/gatb-core/scripts/NewProject/package_tool.sh-68-
##############################################
gatb-core-1.4.2+dfsg/gatb-core/scripts/git_tag_manager.sh-75-done
gatb-core-1.4.2+dfsg/gatb-core/scripts/git_tag_manager.sh:76:shift `expr $OPTIND - 1`
gatb-core-1.4.2+dfsg/gatb-core/scripts/git_tag_manager.sh-77-
##############################################
gatb-core-1.4.2+dfsg/gatb-core/scripts/git_tag_manager.sh-93-# Check whether provided tag already exists on repository
gatb-core-1.4.2+dfsg/gatb-core/scripts/git_tag_manager.sh:94:curTag=`git tag -l $TAG`
gatb-core-1.4.2+dfsg/gatb-core/scripts/git_tag_manager.sh-95-if [ ! -z "$curTag" ]; then
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gatb-core-1.4.2+dfsg/gatb-core/scripts/github_release_manager.sh-78-done
gatb-core-1.4.2+dfsg/gatb-core/scripts/github_release_manager.sh:79:shift `expr $OPTIND - 1`
gatb-core-1.4.2+dfsg/gatb-core/scripts/github_release_manager.sh-80-
##############################################
gatb-core-1.4.2+dfsg/gatb-core/scripts/make_official_release.sh-137-done
gatb-core-1.4.2+dfsg/gatb-core/scripts/make_official_release.sh:138:shift `expr $OPTIND - 1`
gatb-core-1.4.2+dfsg/gatb-core/scripts/make_official_release.sh-139-
##############################################
gatb-core-1.4.2+dfsg/gatb-core/scripts/test-github_release_api.sh-42-done
gatb-core-1.4.2+dfsg/gatb-core/scripts/test-github_release_api.sh:43:shift `expr $OPTIND - 1`
gatb-core-1.4.2+dfsg/gatb-core/scripts/test-github_release_api.sh-44-
##############################################
gatb-core-1.4.2+dfsg/gatb-core/test/functional/test1/run.sh-34-# we get the check directory
gatb-core-1.4.2+dfsg/gatb-core/test/functional/test1/run.sh:35:TEST_CHECK_TMP=`readlink -f $0`
gatb-core-1.4.2+dfsg/gatb-core/test/functional/test1/run.sh:36:export set TEST_CHECK=`dirname $TEST_CHECK_TMP`/check
gatb-core-1.4.2+dfsg/gatb-core/test/functional/test1/run.sh-37-echo $TEST_CHECK
##############################################
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/finalize-release-debian.sh-43-
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/finalize-release-debian.sh:44:MAJOR="`echo $RELEASE_TO_BUILD |cut -d. -f1`"
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/finalize-release-debian.sh:45:MINOR="`echo $RELEASE_TO_BUILD |cut -d. -f2`"
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/finalize-release-debian.sh:46:PATCH="`echo $RELEASE_TO_BUILD |cut -d. -f3`"
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/finalize-release-debian.sh-47-
##############################################
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/finalize-release-macos.sh-42-
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/finalize-release-macos.sh:43:MAJOR="`echo $RELEASE_TO_BUILD |cut -d. -f1`"
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/finalize-release-macos.sh:44:MINOR="`echo $RELEASE_TO_BUILD |cut -d. -f2`"
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/finalize-release-macos.sh:45:PATCH="`echo $RELEASE_TO_BUILD |cut -d. -f3`"
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/finalize-release-macos.sh-46-
##############################################
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/leon/tool-leon-functional-tests-test.sh-85- echo " $BIN_DIR/$BANK_SNIPPET_3 -in ${srafile} -kmer-size $KMER_SIZE"
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/leon/tool-leon-functional-tests-test.sh:86: RESULT=`time $BIN_DIR/$BANK_SNIPPET_3 -in ${srafile} -kmer-size $KMER_SIZE`
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/leon/tool-leon-functional-tests-test.sh-87- echo " answer : $RESULT"
##############################################
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/leon/tool-leon-functional-tests-test.sh-127- echo " ${line}: $FILESIZE Mb"
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/leon/tool-leon-functional-tests-test.sh:128: fname=`echo $line | cut -d'.' -f 1`
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/leon/tool-leon-functional-tests-test.sh-129- ref_file_size_map[$fname]=$FILESIZE
##############################################
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/test-bin-debian7-64bits-gcc-4.7.sh-86-do
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/test-bin-debian7-64bits-gcc-4.7.sh:87: prg_name=`echo $code_snippet | cut -d'/' -f4 | cut -d'.' -f1`
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/test-bin-debian7-64bits-gcc-4.7.sh-88- g++ $code_snippet -Iinclude -Llib -lgatbcore -lhdf5 -ldl -lz -lpthread -std=c++0x -O3 -o $prg_name
##############################################
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/test-bin-macos-10.9.5-gcc-4.2.1.sh-76-do
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/test-bin-macos-10.9.5-gcc-4.2.1.sh:77: prg_name=`echo $code_snippet | cut -d'/' -f4 | cut -d'.' -f1`
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/test-bin-macos-10.9.5-gcc-4.2.1.sh-78- clang++ $code_snippet -Iinclude -Llib -lgatbcore -lhdf5 -ldl -lz -lpthread -std=c++0x -O3 -DBOOST_NO_CXX11_RVALUE_REFERENCES=1 -o $prg_name
##############################################
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/test-suite-debian7-64bits-gcc-4.7.sh-95- do
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/test-suite-debian7-64bits-gcc-4.7.sh:96: prg_name=`echo $code_snippet | cut -d'/' -f4 | cut -d'.' -f1`
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/test-suite-debian7-64bits-gcc-4.7.sh-97- g++ $code_snippet -Iinclude -Llib -lgatbcore -lhdf5 -ldl -lz -lpthread -std=c++0x -O3 -o $prg_name
##############################################
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/test-suite-macos-10.9.5-gcc-4.2.1.sh-88- do
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/test-suite-macos-10.9.5-gcc-4.2.1.sh:89: prg_name=`echo $code_snippet | cut -d'/' -f4 | cut -d'.' -f1`
gatb-core-1.4.2+dfsg/gatb-core/test/jenkins/test-suite-macos-10.9.5-gcc-4.2.1.sh-90- clang++ $code_snippet -Iinclude -Llib -lgatbcore -lhdf5 -ldl -lz -lpthread -std=c++0x -O3 -DBOOST_NO_CXX11_RVALUE_REFERENCES=1 -o $prg_name
##############################################
gatb-core-1.4.2+dfsg/gatb-core/thirdparty/update-boost.sh-8-
gatb-core-1.4.2+dfsg/gatb-core/thirdparty/update-boost.sh:9:for file in `ls $olddir`
gatb-core-1.4.2+dfsg/gatb-core/thirdparty/update-boost.sh-10-do
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gatb-core-1.4.2+dfsg/debian/createmanpages-4-
gatb-core-1.4.2+dfsg/debian/createmanpages:5:VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//' -e 's/[+~]dfsg$//'`
gatb-core-1.4.2+dfsg/debian/createmanpages-6-