===========================================================
                                      .___ __  __   
          _________________  __ __  __| _/|__|/  |_ 
         / ___\_` __ \__  \ |  |  \/ __ | | \\_  __\
        / /_/  >  | \// __ \|  |  / /_/ | |  ||  |  
        \___  /|__|  (____  /____/\____ | |__||__|  
       /_____/            \/           \/           
              grep rough audit - static analysis tool
                  v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
kraken-1.1.1/docs/MANUAL.markdown-102-scripts elsewhere, but moving the other scripts and programs
kraken-1.1.1/docs/MANUAL.markdown:103:requires editing the scripts and changing the "`$KRAKEN_DIR`" variables.
kraken-1.1.1/docs/MANUAL.markdown-104-
##############################################
kraken-1.1.1/docs/MANUAL.markdown-110-
kraken-1.1.1/docs/MANUAL.markdown:111:(Replace "`$KRAKEN_DIR`" above with the directory where you want to
kraken-1.1.1/docs/MANUAL.markdown-112-install Kraken's programs/directories.)
##############################################
kraken-1.1.1/docs/MANUAL.markdown-119-Kraken scripts into a directory found in your `PATH` variable 
kraken-1.1.1/docs/MANUAL.markdown:120:(e.g., "`$HOME/bin`"):
kraken-1.1.1/docs/MANUAL.markdown-121-
##############################################
kraken-1.1.1/docs/MANUAL.markdown-154-
kraken-1.1.1/docs/MANUAL.markdown:155:(Replace "`$DBNAME`" above with your preferred database name/location.
kraken-1.1.1/docs/MANUAL.markdown-156-Please note that the database will use approximately 500 GB of
##############################################
kraken-1.1.1/docs/MANUAL.markdown-337-and uses pipes to delimit the various levels of the taxonomy.  For example,
kraken-1.1.1/docs/MANUAL.markdown:338:`kraken-translate --mpa-format --db $DBNAME` with the above example output
kraken-1.1.1/docs/MANUAL.markdown-339-from `kraken` would result in the following line of output:
##############################################
kraken-1.1.1/docs/MANUAL.markdown-361-    taxonomic name and tree information from NCBI.  These files can
kraken-1.1.1/docs/MANUAL.markdown:362:    be found in `$DBNAME/taxonomy/` .  If you need to modify the taxonomy,
kraken-1.1.1/docs/MANUAL.markdown-363-    edits can be made to the `names.dmp` and `nodes.dmp` files in this directory;
##############################################
kraken-1.1.1/docs/MANUAL.markdown-458-    This will create a new database named `minikraken` that contains
kraken-1.1.1/docs/MANUAL.markdown:459:    10000 $k$-mers selected from across the original database (`$DBNAME`).
kraken-1.1.1/docs/MANUAL.markdown-460-
##############################################
kraken-1.1.1/docs/MANUAL.markdown-747-
kraken-1.1.1/docs/MANUAL.markdown:748:    This command will **not** delete your existing `$DBNAME/database.*`
kraken-1.1.1/docs/MANUAL.markdown-749-    files, but will simply rename them.  If you're satisfied with the new
##############################################
kraken-1.1.1/scripts/rsync_from_ncbi.pl-60-    my $wget_cmd = "wget -q -i wget_manifest.txt";
kraken-1.1.1/scripts/rsync_from_ncbi.pl:61:    system($wget_cmd);
kraken-1.1.1/scripts/rsync_from_ncbi.pl-62-    
##############################################
kraken-1.1.1/debian/createmanpages-4-
kraken-1.1.1/debian/createmanpages:5:VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//' -e 's/[+~]dfsg$//'`
kraken-1.1.1/debian/createmanpages-6-
##############################################
kraken-1.1.1/debian/rules-15-	    if ! echo $${file} | grep -q '\.pm$$' ; then \
kraken-1.1.1/debian/rules:16:		ln -s ../lib/$(DEB_SOURCE)/`basename $${file}` $(CURDIR)/debian/$(DEB_SOURCE)/usr/bin/`basename $${file}` ; \
kraken-1.1.1/debian/rules-17-	    fi \