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              grep rough audit - static analysis tool
                  v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
kraken2-2.1.1/docs/MANUAL.markdown-143-the other scripts and programs requires editing the scripts and changing
kraken2-2.1.1/docs/MANUAL.markdown:144:the `$KRAKEN2_DIR` variables in the main scripts.
kraken2-2.1.1/docs/MANUAL.markdown-145-
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kraken2-2.1.1/docs/MANUAL.markdown-150-
kraken2-2.1.1/docs/MANUAL.markdown:151:(Replace `$KRAKEN2_DIR` above with the directory where you want to install
kraken2-2.1.1/docs/MANUAL.markdown-152-Kraken 2's programs/scripts.)
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kraken2-2.1.1/docs/MANUAL.markdown-158-Once installation is complete, you may want to copy the main Kraken 2
kraken2-2.1.1/docs/MANUAL.markdown:159:scripts into a directory found in your `PATH` variable (e.g., "`$HOME/bin`"):
kraken2-2.1.1/docs/MANUAL.markdown-160-
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kraken2-2.1.1/docs/MANUAL.markdown-193-
kraken2-2.1.1/docs/MANUAL.markdown:194:(Replace "`$DBNAME`" above with your preferred database name/location.
kraken2-2.1.1/docs/MANUAL.markdown-195-Please note that the database will use approximately 100 GB of
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kraken2-2.1.1/docs/MANUAL.markdown-421-    taxonomic name and tree information from NCBI.  These files can
kraken2-2.1.1/docs/MANUAL.markdown:422:    be found in `$DBNAME/taxonomy/` .  If you need to modify the taxonomy,
kraken2-2.1.1/docs/MANUAL.markdown-423-    edits can be made to the `names.dmp` and `nodes.dmp` files in this
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kraken2-2.1.1/docs/MANUAL.markdown-514-
kraken2-2.1.1/docs/MANUAL.markdown:515:    `find genomes/ -name '*.fa' -print0 | xargs -0 -I{} -n1 kraken2-build --add-to-library {} --db $DBNAME`
kraken2-2.1.1/docs/MANUAL.markdown-516-
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kraken2-2.1.1/scripts/rsync_from_ncbi.pl-61-  # manifest; after this, execution can proceed as usual.
kraken2-2.1.1/scripts/rsync_from_ncbi.pl:62:  system("rsync --dry-run --no-motd --files-from=manifest.txt rsync://${SERVER}${SERVER_PATH} . 2> rsync.err");
kraken2-2.1.1/scripts/rsync_from_ncbi.pl-63-  open ERR_FILE, "<", "rsync.err"
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kraken2-2.1.1/scripts/rsync_from_ncbi.pl-110-  print STDERR "Step 1/2: Performing rsync file transfer of requested files\n";
kraken2-2.1.1/scripts/rsync_from_ncbi.pl:111:  system("rsync --no-motd --files-from=manifest.txt rsync://${SERVER}${SERVER_PATH}/ .") == 0
kraken2-2.1.1/scripts/rsync_from_ncbi.pl-112-    or die "$PROG: rsync error, exiting: $?\n";
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kraken2-2.1.1/debian/createmanpages-4-
kraken2-2.1.1/debian/createmanpages:5:VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//' -e 's/[+~]dfsg$//'`
kraken2-2.1.1/debian/createmanpages-6-NAME=`grep "^Description:" debian/control | sed 's/^Description: *//' | head -n1`
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kraken2-2.1.1/debian/rules-16-	    if ! echo $${file} | grep -q '\.pm$$' ; then \
kraken2-2.1.1/debian/rules:17:		ln -s ../lib/$(DEB_SOURCE)/`basename $${file}` $(CURDIR)/debian/$(DEB_SOURCE)/usr/bin/`basename $${file}` ; \
kraken2-2.1.1/debian/rules-18-	    fi \