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/ ___\_` __ \__ \ | | \/ __ | | \\_ __\
/ /_/ > | \// __ \| | / /_/ | | || |
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grep rough audit - static analysis tool
v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
lammps-20200303+dfsg1/examples/USER/phonon/3-3D-FCC-Cu-EAM/in.EAM3D-37-
lammps-20200303+dfsg1/examples/USER/phonon/3-3D-FCC-Cu-EAM/in.EAM3D:38:# execution
lammps-20200303+dfsg1/examples/USER/phonon/3-3D-FCC-Cu-EAM/in.EAM3D-39-run 6500000
##############################################
lammps-20200303+dfsg1/examples/USER/phonon/4-Graphene/in.graphene-42-
lammps-20200303+dfsg1/examples/USER/phonon/4-Graphene/in.graphene:43:# execution
lammps-20200303+dfsg1/examples/USER/phonon/4-Graphene/in.graphene-44-run 6000000
##############################################
lammps-20200303+dfsg1/examples/USER/misc/grem/lj-6rep/double-re-short.py-56- os.system(lmp + " -in ../" + inp + " -var lambda %g -var eta %g -var enthalpy %g > output" % (lambdas[l], eta, H))
lammps-20200303+dfsg1/examples/USER/misc/grem/lj-6rep/double-re-short.py:57: os.system("grep -v '[a-zA-Z]' output | awk '{if(NF==6 && NR>19)print $0}' | awk '{print $3}' >ent")
lammps-20200303+dfsg1/examples/USER/misc/grem/lj-6rep/double-re-short.py-58- enthalpy[l] = os.popen("tail -n 1 ent").read()
##############################################
lammps-20200303+dfsg1/tools/pymol_asphere/src/make_manpages.sh-14-
lammps-20200303+dfsg1/tools/pymol_asphere/src/make_manpages.sh:15:foreach exec ($execs)
lammps-20200303+dfsg1/tools/pymol_asphere/src/make_manpages.sh-16- $execdir/$exec -h > $exec.manpage
##############################################
lammps-20200303+dfsg1/tools/doxygen/doxygen.sh-62- read -r -a array < ${LAMMPSSRC}/version.h ;
lammps-20200303+dfsg1/tools/doxygen/doxygen.sh:63: version=`echo ${array[2]} ${array[3]} ${array[4]} | sed s/\"//g`;
lammps-20200303+dfsg1/tools/doxygen/doxygen.sh-64- cp -av ${LAMMPSDOXYFILE} ${DOXYFILE} ;
##############################################
lammps-20200303+dfsg1/tools/ch2lmp/lammps2pdb.pl-1123- {
lammps-20200303+dfsg1/tools/ch2lmp/lammps2pdb.pl:1124: system("rm -f ".$psf_name);
lammps-20200303+dfsg1/tools/ch2lmp/lammps2pdb.pl:1125: system("ln -s ".$psf_ctrl_name." ".$psf_name);
lammps-20200303+dfsg1/tools/ch2lmp/lammps2pdb.pl-1126- }
##############################################
lammps-20200303+dfsg1/tools/ipp/ipp-175- @items = split(/\s+/,$line);
lammps-20200303+dfsg1/tools/ipp/ipp:176: if (eval($items[1])) {;}
lammps-20200303+dfsg1/tools/ipp/ipp-177- else { $print = 0;}
##############################################
lammps-20200303+dfsg1/tools/i-pi/examples/lammps/Makefile-24-define run_lammps
lammps-20200303+dfsg1/tools/i-pi/examples/lammps/Makefile:25: for i in `seq 1 $1`; do \
lammps-20200303+dfsg1/tools/i-pi/examples/lammps/Makefile-26- $(LAMMPS) < $2 & \
##############################################
lammps-20200303+dfsg1/src/USER-INTEL/TEST/run_benchmarks.sh-46-
lammps-20200303+dfsg1/src/USER-INTEL/TEST/run_benchmarks.sh:47:export LOG_DIR_HEADER=`echo $LMP_BIN | sed 's/\.\.\///g' | sed 's/\.\///g'`
lammps-20200303+dfsg1/src/USER-INTEL/TEST/run_benchmarks.sh-48-export LOG_DIR_HOST=`hostname`
##############################################
lammps-20200303+dfsg1/src/Make.sh-18-style () {
lammps-20200303+dfsg1/src/Make.sh:19: list=`grep -sl $1 $2*.h`
lammps-20200303+dfsg1/src/Make.sh-20- if (test -e style_$3.tmp) then
##############################################
lammps-20200303+dfsg1/src/Make.sh-29- touch style_$3.h
lammps-20200303+dfsg1/src/Make.sh:30: elif (test "`cat style_$3.h`" != "") then
lammps-20200303+dfsg1/src/Make.sh-31- rm -f style_$3.h
##############################################
lammps-20200303+dfsg1/src/Make.sh-45- rm -f Obj_*/lammps.d
lammps-20200303+dfsg1/src/Make.sh:46: elif (test "`diff --brief style_$3.h style_$3.tmp`" != "") then
lammps-20200303+dfsg1/src/Make.sh-47- mv style_$3.tmp style_$3.h
##############################################
lammps-20200303+dfsg1/src/Make.sh-58-packages () {
lammps-20200303+dfsg1/src/Make.sh:59: list=`grep -sl $1 */$2*.h`
lammps-20200303+dfsg1/src/Make.sh-60- if (test -e packages_$3.tmp) then
##############################################
lammps-20200303+dfsg1/src/Make.sh-63- for file in $list; do
lammps-20200303+dfsg1/src/Make.sh:64: dir="\"`dirname $file`\""
lammps-20200303+dfsg1/src/Make.sh-65- echo "#undef PACKAGE" >> packages_$3.tmp
##############################################
lammps-20200303+dfsg1/src/Make.sh-72- touch packages_$3.h
lammps-20200303+dfsg1/src/Make.sh:73: elif (test "`cat packages_$3.h`" != "") then
lammps-20200303+dfsg1/src/Make.sh-74- rm -f packages_$3.h
##############################################
lammps-20200303+dfsg1/src/Make.sh-78- mv packages_$3.tmp packages_$3.h
lammps-20200303+dfsg1/src/Make.sh:79: elif (test "`diff --brief packages_$3.h packages_$3.tmp`" != "") then
lammps-20200303+dfsg1/src/Make.sh-80- mv packages_$3.tmp packages_$3.h
##############################################
lammps-20200303+dfsg1/src/Makefile-164- @if [ -f lmpinstalledpkgs.h ]; \
lammps-20200303+dfsg1/src/Makefile:165: then test "`diff --brief ${TMPNAME}.lmpinstalled lmpinstalledpkgs.h`" != "" && \
lammps-20200303+dfsg1/src/Makefile-166- mv ${TMPNAME}.lmpinstalled lmpinstalledpkgs.h || rm ${TMPNAME}.lmpinstalled ; \
##############################################
lammps-20200303+dfsg1/src/Makefile-189- @if [ -f lmpgitversion.h ]; \
lammps-20200303+dfsg1/src/Makefile:190: then test "`diff --brief ${TMPNAME}.lmpgitversion lmpgitversion.h`" != "" && \
lammps-20200303+dfsg1/src/Makefile-191- mv ${TMPNAME}.lmpgitversion lmpgitversion.h || rm ${TMPNAME}.lmpgitversion ; \
##############################################
lammps-20200303+dfsg1/src/USER-ADIOS/Install.sh-36- elif ( ! test -z "$ADIOS2_DIR" ) then
lammps-20200303+dfsg1/src/USER-ADIOS/Install.sh:37: if ( test `which $ADIOS2_DIR/bin/adios2-config` ) then
lammps-20200303+dfsg1/src/USER-ADIOS/Install.sh-38- CONFIGSCRIPT=$ADIOS2_DIR/bin/adios2-config
##############################################
lammps-20200303+dfsg1/src/USER-ADIOS/Install.sh-43- elif ( ! test -z "$ADIOS_DIR" ) then
lammps-20200303+dfsg1/src/USER-ADIOS/Install.sh:44: if ( test `which $ADIOS_DIR/bin/adios2-config` ) then
lammps-20200303+dfsg1/src/USER-ADIOS/Install.sh-45- CONFIGSCRIPT=$ADIOS_DIR/bin/adios2-config
##############################################
lammps-20200303+dfsg1/src/USER-ADIOS/Install.sh-55- if [ "$CONFIGSCRIPT" != "none" ]; then
lammps-20200303+dfsg1/src/USER-ADIOS/Install.sh:56: ADIOS2_INC=`$CONFIGSCRIPT --cxx-flags`
lammps-20200303+dfsg1/src/USER-ADIOS/Install.sh:57: ADIOS2_LIB=`$CONFIGSCRIPT --cxx-libs`
lammps-20200303+dfsg1/src/USER-ADIOS/Install.sh-58-
##############################################
lammps-20200303+dfsg1/python/examples/pylammps/interface_usage_bonds.ipynb-27- "source": [
lammps-20200303+dfsg1/python/examples/pylammps/interface_usage_bonds.ipynb:28: "1. Download the latest version of LAMMPS into a folder (we will calls this `$LAMMPS_DIR` from now on)\n",
lammps-20200303+dfsg1/python/examples/pylammps/interface_usage_bonds.ipynb-29- "2. Compile LAMMPS as a shared library and enable exceptions and PNG support\n",
##############################################
lammps-20200303+dfsg1/python/examples/pylammps/interface_usage_bonds.ipynb-309- " # To avoid a syntax error in Python 2 executions of this notebook, this line is packed into an eval statement\n",
lammps-20200303+dfsg1/python/examples/pylammps/interface_usage_bonds.ipynb:310: " x = float(eval(\"L.print('\\\"${a}\\\"')\"))\n",
lammps-20200303+dfsg1/python/examples/pylammps/interface_usage_bonds.ipynb-311- "x"
##############################################
lammps-20200303+dfsg1/python/examples/pylammps/interface_usage.ipynb-27- "source": [
lammps-20200303+dfsg1/python/examples/pylammps/interface_usage.ipynb:28: "1. Download the latest version of LAMMPS into a folder (we will calls this `$LAMMPS_DIR` from now on)\n",
lammps-20200303+dfsg1/python/examples/pylammps/interface_usage.ipynb-29- "2. Compile LAMMPS as a shared library and enable exceptions and PNG support\n",
##############################################
lammps-20200303+dfsg1/python/examples/pylammps/interface_usage.ipynb-260- " # To avoid a syntax error in Python 2 executions of this notebook, this line is packed into an eval statement\n",
lammps-20200303+dfsg1/python/examples/pylammps/interface_usage.ipynb:261: " x = float(eval(\"L.print('\\\"${a}\\\"')\"))\n",
lammps-20200303+dfsg1/python/examples/pylammps/interface_usage.ipynb-262- "x"
##############################################
lammps-20200303+dfsg1/python/examples/pylammps/simple.ipynb-27- "source": [
lammps-20200303+dfsg1/python/examples/pylammps/simple.ipynb:28: "1. Download the latest version of LAMMPS into a folder (we will calls this `$LAMMPS_DIR` from now on)\n",
lammps-20200303+dfsg1/python/examples/pylammps/simple.ipynb-29- "2. Compile LAMMPS as a shared library and enable exceptions and PNG support\n",
##############################################
lammps-20200303+dfsg1/cmake/Modules/Packages/USER-PLUMED.cmake-80- add_definitions(-D__PLUMED_WRAPPER_CXX=1)
lammps-20200303+dfsg1/cmake/Modules/Packages/USER-PLUMED.cmake:81: include(${PLUMED_LIBDIR}/plumed/src/lib/Plumed.cmake.static)
lammps-20200303+dfsg1/cmake/Modules/Packages/USER-PLUMED.cmake-82- elseif(PLUMED_MODE STREQUAL "SHARED")
lammps-20200303+dfsg1/cmake/Modules/Packages/USER-PLUMED.cmake:83: include(${PLUMED_LIBDIR}/plumed/src/lib/Plumed.cmake.shared)
lammps-20200303+dfsg1/cmake/Modules/Packages/USER-PLUMED.cmake-84- elseif(PLUMED_MODE STREQUAL "RUNTIME")
lammps-20200303+dfsg1/cmake/Modules/Packages/USER-PLUMED.cmake-85- add_definitions(-D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_DEFAULT_KERNEL=${PLUMED_LIBDIR}/libplumedKernel${CMAKE_SHARED_LIBRARY_SUFFIX})
lammps-20200303+dfsg1/cmake/Modules/Packages/USER-PLUMED.cmake:86: include(${PLUMED_LIBDIR}/plumed/src/lib/Plumed.cmake.runtime)
lammps-20200303+dfsg1/cmake/Modules/Packages/USER-PLUMED.cmake-87- endif()
##############################################
lammps-20200303+dfsg1/cmake/Modules/Packages/USER-VTK.cmake-2- find_package(VTK REQUIRED NO_MODULE)
lammps-20200303+dfsg1/cmake/Modules/Packages/USER-VTK.cmake:3: include(${VTK_USE_FILE})
lammps-20200303+dfsg1/cmake/Modules/Packages/USER-VTK.cmake-4- add_definitions(-DLAMMPS_VTK)
##############################################
lammps-20200303+dfsg1/lib/colvars/Makefile.common-78- @for src in $^ ; do \
lammps-20200303+dfsg1/lib/colvars/Makefile.common:79: obj=`basename $$src .cpp`.o ; \
lammps-20200303+dfsg1/lib/colvars/Makefile.common-80- $(CXX) -MM $(COLVARS_INCFLAGS) $(LEPTON_INCFLAGS) \
##############################################
lammps-20200303+dfsg1/lib/gpu/lal_preprocessor.h-313- c = ((WARP_SIZE-width) << 8) | 0x1f;
lammps-20200303+dfsg1/lib/gpu/lal_preprocessor.h:314: asm volatile ("shfl.bfly.b32 %0, %1, %2, %3;" : "=f"(ret) : "f"(var), "r"(laneMask), "r"(c));
lammps-20200303+dfsg1/lib/gpu/lal_preprocessor.h-315- return ret;
##############################################
lammps-20200303+dfsg1/lib/gpu/lal_preprocessor.h-322- double ans;
lammps-20200303+dfsg1/lib/gpu/lal_preprocessor.h:323: asm volatile ("mov.b64 {%0, %1}, %2;" : "=r"(y), "=r"(x) : "d"(var));
lammps-20200303+dfsg1/lib/gpu/lal_preprocessor.h:324: asm volatile ("shfl.bfly.b32 %0, %1, %2, %3;" : "=r"(x2) : "r"(x), "r"(laneMask), "r"(c));
lammps-20200303+dfsg1/lib/gpu/lal_preprocessor.h:325: asm volatile ("shfl.bfly.b32 %0, %1, %2, %3;" : "=r"(y2) : "r"(y), "r"(laneMask), "r"(c));
lammps-20200303+dfsg1/lib/gpu/lal_preprocessor.h:326: asm volatile ("mov.b64 %0, {%1, %2};" : "=d"(ans) : "r"(y2), "r"(x2));
lammps-20200303+dfsg1/lib/gpu/lal_preprocessor.h-327- return ans;
##############################################
lammps-20200303+dfsg1/lib/gpu/geryon/file_to_cstr.sh-51- shift
lammps-20200303+dfsg1/lib/gpu/geryon/file_to_cstr.sh:52: i=`expr $i + 1`
lammps-20200303+dfsg1/lib/gpu/geryon/file_to_cstr.sh-53-done