===========================================================
.___ __ __
_________________ __ __ __| _/|__|/ |_
/ ___\_` __ \__ \ | | \/ __ | | \\_ __\
/ /_/ > | \// __ \| | / /_/ | | || |
\___ /|__| (____ /____/\____ | |__||__|
/_____/ \/ \/
grep rough audit - static analysis tool
v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
last-align-1145/examples/multiMito.maf-5-s fuguMito 16 350 + 16447 CAAAGCAGAGTACTGAAGATGCTAAGATGGGCCCTGAAAAGTCCCGCAGGCACAAAAGCTTGGTCCTGACTTTACTAACAACTCTGATCAAACTTACACATGCAAGTATCCGCATCCCAGTGAAaatgccccccgcc---ccccgtcCGGAAATAGGGAGTTGGTATCAGGCACACAAATTTGTAGCCCATGACACCTAGCTTT-GCCACGCCCCCAAGGGAATTCAGCAGTGATAAACATTAAGCCATAAGTGAAAACTTGACTTAGTTATGAT--CTAAAGAGTCGGTAAAACTCGTGCCAGCCACCGCGGTTATACGAGAGACCCAAGTTGTTAG-CCAACGGCGTAAAGGGTG
last-align-1145/examples/multiMito.maf:6:p ',159<>>?@DIMQTUVVVVTMKIC:1'%#"!+-.///045~68;DMRTV\]ZZZ`fghghjjljig_a_^XVSSSUYZYUSSRRQRU]a`_chilmmmmmke\TKJHHFECBBAAA>8542---,,,,,,,*)($"$"~*+-........./12222222357~9:::96/,%##""""""""/9BIKSVVWXWWVWW`fhlm~mkjllkgeeegllhffb^_~ejmmmmmlg_\\\[[\\[_gljjlihillihikgfeaejf^UKB?=<7/%#$"*,/8AHJSX_be`bdgghlmmmkkmmkkljjlljkmlicilmmjifd^[ZTRPOOOOOMM~MNOPT\^fhaXROIGE@>
last-align-1145/examples/multiMito.maf-7-p %*/37:;<<=BFIKLLMMMMMMMMMMMLLLKKKKKKKLLNO~TX]bgkosuvwyz~~~~~~~~~~~~~~~{wrmmlllkjggfffffffffeeedb^ZVQLHC>944210.*))))))))))(((((((((((((((((~((((((((((((((((((((((((~)))))))))))))))))))-1355899;<<>>@AFJOTY~]bglquz~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}yuqlggeb^YTTSSTTUZ_chmquxz{~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{wrmhd_ZUQLKKKJJHH~HHHHHHHHGGFDA=<<;:
last-align-1145/examples/multiMito.maf:8:p (())))))))))))))))))))))))))(((((((''''''~'''''''''&%$#)+,-.015<BEIKLQVZ^afgbZWPPMMLLKJJJJHHHJQWYafilmmjjichhc`^_^^]_`_VQH>;:8887776632,$++#,01246<>DFNQUWWVUTTZZZ[]~ef_ULIB?>=<;;;;;;>>GPUUVRPIIG@744432,*##-47@INKHGFEA8/,+%$""/9BLU]b`cghiihgc`_biljjib_[ZZUUTTTUVXZ__]_^VMJC:0-,+%#""/579@CJLSUZ\]Z[[~~~~~~~~~~~~~~~~~~~`a`\\[Z^`ba`\YWWRJG@7.##()+-47=???><940+'
last-align-1145/examples/multiMito.maf-9-p ''(((((((((((((((((((((((((((((((((((((((~((((((((((((()**+.016:?CFHIMRW[`cefgggggggghhhhhhhhilnosx|~~~~~~zywtplkiiggfda]YTONNNNNNNNNMMMMLLLMMMNOOPQRSX]adfghhhjklmm~oppqppppomlkkjjkkmmqsttvwwwwwvtqqoonlkjglqvz~~~~~~~|xsniedbafkotx{}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{wvvutqninsw|~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{vutppnnnmljgc^ZYWTPKGB============<:73/*%
##############################################
last-align-1145/examples/multiMito.maf-17-s fuguMito 462 556 + 16447 CTC-GAACCCACGAAAGCTAGGACACAAACTGGGATTAGATACCCCACTATGCCTACCCCTAAAC---ACGATATGAAAC-TACGTACATATCCGCCTGGTTACTACGAGCATTA--GCTTAAAACCCAAAGGACTTGGCGGTGCTTTAAAACCATCTAGAGGAGCCTGTTTTAAAACCGATACTCCCCGTTCAACCTCACCCCTCCTT----GTTTTAACCGCCTATATACCACCGTCGTCAGCCTACC-CTG-TGAAGGGCAAATAGTAGACAAAA-TTGGCACA-GCCAAAAACGTCAGGTCGAGGTGTAGCGAATGGAGGGGGACAAAATGGGCTACATTCTCT--GCCTAGAGAAC-ACGAAAGATGTGCTGAAA-TGCACACCCGAAGGAGGATTTAGCAGTAAGCAAGAAATAGA------GTGTCATGCTGAAACCGGCTATGAAGCGCGCACACACCGCCCGTCACTCTCCCCA---AActcttaatttaaaaataactaATAAGCC--AccaaaagaaaaggggaggcAAGTCGTAACATGGTAAGTGTACCGGAAGGTGCACTTGGAAAAACCGG
last-align-1145/examples/multiMito.maf:18:p ;<<<=BDGPY_a_aaglmmkkmlighhgillihilkkmmmmlhffhlmmmmmmkkmkec`c^\ZTRKB?>85432.,*%"",/8=>?BJOOQRU^dffc_ZZ_djljdjljjici~~lmjjgffhlmlihijjjc`chiljjichecahkkkecahklmmmjkmmkkmmkjlicijjmmmmlhghgffgichhbeiilkjda\SPI@><~~~~6-$*--$*-6>@JS\aceijlkkmmmjig_ULB@>86~4.&%#")*++,,,.469@DEEEDA?>=~80~-&&#""-08=>?@CMV]_gjjmmjjjjmmmmjca_biib__ecb`fgkihilhggf^TKA8532-$"''()+.4667=>AJPRWWUNMMMMMMKD;871(%%%#"!!/18:@BDLNW]^ahidjllfed_a_bgebijkj~~~~~~hciliiebghkgd^]_]aa^_gkjie^]`a_fiijjjjlihimmmlged`XUNE;92/((('''%%$$$##""""""""""""""""""""""""######-6?FIOSY[`dkmmmmjjkebghljif``fkmmjjihhgec__dhihgb^^bcadgc
last-align-1145/examples/multiMito.maf-19-p :::;;>@AEIKLMOPTY^cglqv{~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{zyyxurniedhmrv{~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|{zvrn~~~~ie`[[[[`einsx|~~~~~~~~~~~~~~~~~~~}xto~jea`^]______``dfghhhhhgffff~ec~cbaa``bbgknpqvz~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{vqmhc^YZZZZ[_beffhimprrvyz{~~~~~~~~~~~zupomjfbacchloqrw{~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{vqlhc^YUPKFA=<:999987765444444444444444444444444444444456:?DIMQTVW\aejotx}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
last-align-1145/examples/multiMito.maf:20:p $%%'(,/015789;;@EILNOSX]adfghllihilkkmmmmlhffhlmmmmjc`cjlihhib_]WVUNLLKJFDCBA@@@~@CIKKLLLMMMOSUUSLLLKKKKKIC:70'$"""""-0:CKPRT]cd`cehijc`chiljjlib]\^]YYWWWVX~~~~~~~~~~~~~~~~~djjjmmmmjc`^`_^be_WTTTUURRRQPNIB975/"#&,"$&~~~~09AGLTYZacegiic`ZXQHFD>5,)''&%$+125<>>>>>>>>>>>HPSNNLE<920!!"~#$%&)~279;ABEJLQRT]dglmjjjihchf^URPOJB8885.,""%.468AGIKU^gkjca`^ZR~I?=;:95-+)(#$-5788899:;<>AIPSTTTSRRRSTUY[bghhgcgilihimmmmlkfd`YWRNJA854.,"$())("$)*++,/8<>@ABILT\`_ciic`cfchlmlkhchijlihhibYQHEC>5220*"$"#$$$$$$%%&''),---....///011222235566778:<??FLNORSST]cekmmmmjjkebghlkkmmmmkeaeeb`^_a^ZVPJF@?91'%####"
last-align-1145/examples/multiMito.maf-21-p #$$&'+./04678::?DHKMNRW\aejoty}~~~~~~~~~~~~~~~~~~~~~~~~~~~~}ytojfec`__^^^^]]]]]]~]^^^^^^^^___bddeeeeeeefffeedb_[ZZZYY^chlqv{~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{zzyxutttrplhcba]YYYY]^_~~~~dimrvyz{~~~~~}yupomjiiigea``_^[[\\\\\\\[[[[[[[[[[[[[[[ZZZYVVW~WZ[\\~]]^^_````aabglquz~~~~~~~~~~~~~}zvvtqmhddinsx|~~~~~~~~~~|wsni~d`_]\\\[YUTSSSSSSSSSSSSSTTTTTTTTTTTTTTUWX\aehjkosuvwwwvsplgc^YTSRNJFA@@?????????@CEFFHHKLMOPQRSWZ\]aehjjmoptxz{|{zzywtplgb^YTOKFA<7752........................................../2348;=>BEGHMQV[`dinrvy{{~~~~~}ytpkfa`_[WSRPMIE@;621/,('%%$#"
last-align-1145/examples/multiMito.maf:22:p %$$#,2366?FHIIIS\eic`cgd`dgghllihilkkmmmmlhffhlmllkf^ZYTLKKJF>7.%&&#&&'()+--355:~;=>?????AAACHNPUVWWXZ_cjmmmjcZWWYa~~iljigeefd`dgfhijjc`chiljjmlia_\][\\``_~~~~~~~~~~~~~~~~^][Z\]]ahkha^^abcegbekjgaXVNLDA>=:9831~~~~0*((**((+4;>GPX[]`ffbeechhbeicZQGEC=;~94+&(+++++++,,,,,,,,,,,,,,+~*)"#%%*,~,,.34569BILLU\_ghbeiilmmlha\[\WNKKKKMMMOOOTVYaeed^UKIA85443/~!!"#$%%%%%%$$,49;;==<;:98874-*)#$%&&')*-7@FIOPSY\dgghlmmmibXUSRLJIJLMW`gi~~~~~~e`XONNOSTUVTRQQRTVZZ\djjjlkkjichjjkkjjlihgf_USKDB@><860!#$!"#$%'(+++,,--./02455555443220!!!!"""##$%&'*014=BDFNQZcjmmmkkmmmkklkkmmmmkeaeeb`_bilmmmjjhfa]\_`b`\]
last-align-1145/examples/multiMito.maf:23:p )))).2567;=>?AAFKNRSTX[]^chlqv{~~~~~~~~~~~~~~~~~~~~ytonmiigd`\WSNIIIIIIIIIIIJJJJ~JJJJJJJJJJJKNOPPPPPQQV[`dhjlmmmmns~~x|~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~zupkgba__^^]~~~~[WWUUUUWX]afkpty|~~~~~~~~~|{zwtokjjig~ea\XXXXXXXWWWWWWWWWVTTTSSSS~SSRSSSTT~TTUY\^_dhkmmrw{~~~~~~~~~~~~~~~~~|{{{{{zzyyyyywuqlhc^ZUPKGFDA~============<<<<<<<<<<<<<<<<<<<<<<<====>CGLPSUVZ_dimrw{~~~~~|xwvuuvwx|~~~~~~~~~~~|xwwwxy{|}|{{{~~~~~~~~~~~~~~~~}zvqmhc^ZUPKFB=8752.*)'$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$%&'*,-158:;@EINSX\afkpty~~~~~~~~~~~~~~~~~~~~~~|xsnie`__^\ZVU
last-align-1145/examples/multiMito.maf-24-
##############################################
last-align-1145/examples/multiMito.maf-31-p WWZ[[\\\\\\\\\\\\\[ZXWWWWVVVVVXZ[^``eilmnn~~~~otx}~~~~~~~~~~~~~~~~~~~~z~~~~utrrp~~~~~~nmmmm~~~~~n~~nnnnnnnnootx|~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{vqmhggggggggggghiiiiijllqtvwxwxz{~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}yut~~tssss~~~ssrrssvxy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|w
last-align-1145/examples/multiMito.maf:32:p '~+058;=>>>>=;4+('%$$#"""!!!~~24=ABBAA=6-$)**$)*-6?HQX^cfggeb`^YQHE>52+'),)')--.~~~~~~/00/+~~~~~#)#-467789;@BEMSUVX^cb`cda_]\^_fjihdb`dklg_VTMC:777543//-&$"!*+,,.09>???ACKOOOKIHGB:75432211111.,+&#""""0:CMV]`^[\[[^]\\\XP~~G=:4**0**39;;=GPX^fjjhchjebikgeddbggbeefdafbYYYVUTTWahllhgcfa[[[[bdkmkkmkf]ZZ~~~~~~~~~~~~~~
last-align-1145/examples/multiMito.maf-33-p %~)-/11122222222222222222222~~22222222222222223348=BGKPUX[]]^^^^^^]][YUQQQQQQQQQ~~~~~~QQQQQ~~~~~QQQUY\]]`aacdimqtvw{~~~~~~~~~~~~~~~~~~~~~~~~~~~}xxvsonlljhe``abbbbcgjlmmooqrrrrrrrpnmkkkkklmnnnnnmkhdccbglptwyzzzzyz{{{||{y~~vrmid___cfghhinsx|~~~~~~~~~~~~~~~~~~~~~~~~~~~~}zyyz~~~~~~~~~~~~~~~~~{vrmhc_ZYYXVTPKGB=84/*%
last-align-1145/examples/multiMito.maf:34:p '~-16:=?@@AAA@:1.-'$$#"!,.0~~~68;CIKNW_dgg~~~~d`dhiigfc^VMJC:74//,,+*)(~~~~&&$#"&&'%#"'((('###$$$~~$%%&&'(()+-233347=>AAABCCCCFOX^`ba_djmlhab^UKIHHGEE@8/%"".357<>@CDDDDDDDAA@?>==<88888889:<?GLMNOOOOS~V_daYPG=8888777773+''')..0~~~124;==>>HQZbfebgigbejgeddbhkib_]_`a^VTTTUTTXailligcijd~~~~~~~~~~~~TRQRTUUVVVTQMID?:
last-align-1145/examples/multiMito.maf-35-p %~*/37:<==>?????????????@@@~~~CEFIKKPTX[]^~~~~^^^^^^^^^]\YVQMHC>=<;:840~~~~+*(((''''''''''''''''+~~--./0233558:;;;<===>>>>????@EJNRUWX]adghhjkkkkkkkjjjigdcabccccccdddddddddccccccccccdddeinrtvwwvvtsss~sttsrpmidccccccccba^^__abe~~~ghlquxz{~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}~~~~~~~~~~~~~~~~~~{wrmid_ZVUTTTTTTTSROKGB>9
##############################################
last-align-1145/examples/multiMito.maf-45-p ..//000000000000000000000000001133567777777789:?DIMRVYZ[[[\\[[[[ZZZ~~ZY^beghmqvz|~~~~~~~~zupkgffec```_^[[\\]`bbgjmnnnnooooooppuy}~~~~|ytpkfb~]\ZZZ\]adfgkpuz~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~zutrrrrruvwwwwx|~~~~~|xxxxzz~~~~~~}|zzyyyyyxxxwvtsssssswyz{zywtpkgb]XSOJIGD@;;962-($##"""""""""""""""~""""""~~~""""""""""""""""""""""""""""""""""#########$$%()**++++++++++++++++***))))(''&&&&&&%#
last-align-1145/examples/multiMito.maf:46:p ()*,,0356:<>??@@@@BBBBCCCDINRVXZZYY[[ZYWUUUTTVVZ]bfhijg`WQH?<5,)('&$$(~)),36?IPRY\eiifedeglmlicfgf^UKIA~~885.%"",/7=?FMOPPNMNQZ`bfcZXVPNG>4+&(+~~~4>FLNPXZchhjjlljjje][\^^chilmmlihijjmlgd__dglmmlhfaXUUUWY]^_`ZZ^aijjmmmmmmkklhgaYYZ`hljdba[\[dkmkid^VMJJIHHIIJLLNTXX`edb`fhkibef`abdklibdgc`cgdba_ed]][\YVVY~~~~~~~~~~~~~~~~~~~~~~~~~~~.---,,,,,++++++++++~*****(&'&%&''''''((~~~~~~(((((((()*,,,,,------------------------------,,,,+*((&&%%%%%%%$$$$##
last-align-1145/examples/multiMito.maf-47-p #$$&'+.0047999:;;;<====>>?DIMQTUVVW[_bdeefgggijotx|~~~~}zvrmhc_ZYYYXX\~]^chmqv{~~~~~~~~~~~~~~~}}{xtokjh~~edb`\[[\]`bbfijkkkllqvz}~~~~}yxwtpkfhi~~~nsx|~~~~~~~~~~~~~~~~}}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yutrqqqqqrrsvxx}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}~~~~~~~~~~}xsoje`\WRMHD?:51,'&&&&&&&&&&&&&&&&&&~&&&&&&&&&&&&&&&&&&&~~~~~~&&&&&&''((((((()))))))))))))))))))))))))))))))))))(&&%%$$########"""
##############################################
last-align-1145/examples/multiMito.maf-65-s fuguMito 2873 1788 + 16447 ATTGTACCCGTTCTACTAGCCGTAGCTTTCTTAACATTAATTGAACGAAAAGTTTTAGGTTACATGCAGTTACGAAAGGGCCCCAACATCGTAGGACCTTACGGACTCCTCCAACCCATCGCCGATGGCGTTAAACTTTTCATCAAAGAACCAGTCCGACCATCTACCTCCGCTCCCATCCTATTCATTATTGCCCCTACACTAGCCCTTACTCTCGCCATAATAATATGAACACCAATGCCCCTCCCCTACCCCATCCTTGACTTAAATCTGGCCATTCTATTTGTCCTAGCTATCTCTAGCTTGGCAGTCTACTCTATTCTGGGCTCCGGATGGGCCTCCAACTCAAAATATGCCCTTATAGGATCCCTACGAGCAGTTGCACAAATAATCTCATACGAAGTAAGTCTAGGGCTAATCCTTTTATCattgattatttttacaggcAACTTTACCCTACAAACATTTAACGTCACCCAGGAAAGCATTTGACTAATCATCCCAACATGACCCCTTGCAGCAATATGATACATCTCCACGCTAGCCGAAACAAACCGAGCCCCCTTTGACCTAACAGAGGGGGAGTCCGAACTGGTATCTGGGTTCAATGTTGAATATGCAGGAGGTCCCTTTGCCCTATTTTTTCTGGCAGAATATGCCAACATCCTCTTAATAAACACGCTCTCCACAATCCTGTTCCTAGGAGCCTTACATATGCCCGCTCTTCCAGAACTAACCTCTATCAATTTAATatcaaaaacagccattttatcCCTCATCTTCCTATGAGCCCGAGCCTCCTACCCACGATTCCGATATGACCAGCTAATACACCTCACATGAAAAAACTTCCTACCACTTACATTAGCATTCATTATCTGACATCTTGCACTCCCAACTACAATAGCAGGCCTTCCCCCTCAAATATAAAAGGAACTGTGCCTGA--AACAAAGGACCACTTTGATAGAGTGAATCATGAGGGTTAAATTCC---------CTCCAGCTCCTTAGAAAGAAGGGACTTGAACCCAACCCGGAGAGATCAAAACTCTCAGTGCTTCCACT---ACACCACTTTCT-AGTAAAGTCAGCTAAATAAGCTTTTAGGCCCATACCCTAAAAATGGAGG-TTAAAATCCCCCCTTTACAAATGAACCCTTATATTACTGCCTCCCTTTTATTTGGCCTGCTGTTAGGTACAACTATTACAACTACCAGCACACACTGACTAATTGCATGAATGGGCCTAGAAATTAACACCCTAGCTATTATCCCCCTAATAGCCCAACAACACCACCCACGAGCAATTGAAGCCACTACAAAATACTTCTTGACTCAAGCTGCCGCAGCAGCAACCCTCCTCCTCGCAGCTACAACCAACGCCTGAATAACAGGCCAATGAGAGCTACAGCAAGCTACCCACCCAGTCCCAACAACC-ATAATTACCATTGCATTAGCCTTAAAAATTGGACTAGCCCCACTCCACACCTGACTCCCAGAAGTAATACAAGGACTAGACCTTACAACTGGACTTATCCTGGCCACATGACAAAAAATCGCACCATTCTCCCTTCTATTACAAAT---TCAACCTAATAACCAAACACTCTTAATCCTCCTCGCCATCCTCTCCATACTTGTCGGCGGATGAGGGGGCCTAAATCAAACCCAAGTACGTAAAATTCTAGCCTACTCCTCCATCGCCCACCTAGGCTGAATAGTCATTATTCTTCAATTCTCACCAACCCTAGCTGTAATAACCCTAGCACTTTATATCATCAtaacctcctccaccttcctt
last-align-1145/examples/multiMito.maf:66:p >>>DFIR[aijjmmkkmljc`be`bb`eggfaXTNLJJJJKNW^age]]\\\XVVYacb`ggchklljkmmmlg`abdggcba_efhcghjdacb^___gid\YWWZZ[_gjihdb_aa`ghcilmmkklkfdcc_a_``^a]\^_ac`ZYWTTTRPPOOOOPPRTXWVUTTWW[\VVWWWXY[[\ab`c__db^`aaeb`^ae`a_aa`_ZWW[\^[TSSRRST[`dhg`[ZY[\]_b^^]]`ebZXTTWXXWWWYYZ^]``\[]]^afhkh`^[[\[\ahhghjeb`djib_`a`gjlmmkklibcahhgillia^__]`dbglmmmkecahlmkfbikihije\YZZZchgaa_baZY]egebfc^]_`gklkfbilmlighhgiliheaejmmmmmkklhacba`hkkebfdada_``]]aefb[WUUUZ^^adghdbaggd\[TKB???>>>>>>??AGILU]cbahkihdadhiljjkjeafcilmkkljc`cjljjhbcahllfdd_a_bgilmkjmmmmmihilmljc`bc`dkmmmlid_`_]_aeea^^aabceiimmjcaZWWYYbefca^aa`febhgfbeklicikjc`^`_^dfhbfbijjmmljebgdaefcba_egjha^^bijjkecahklkebgdbikkkhacekljjligchijlihhhcefff`a`^bhjf__ciljjjjlkdb[VUSRRSQKCBB?>=====>>?@BDMUWailmlicgdb\SSTTTTSTTRRNMLLLLQRV]ejebggb^_]_\WUUW[^_]`hic`bb`cgdaffbd`cd^^^^bfbghiiibfkmlibeiijebhjjig`a`^bilmlfdccdfhca_bijdb`ce`bb_dkmmmmihd[[`ddadd]ZZYSQJJGFEED@=<<;:6421-,,,,+++++++++++****)(''#"~~~-358AKT]eklmm~~lh~ffgiebghllihilmmmmmmlhffb_a`XNKKKKKLMMMOPP~~~~~~~~~PY`bihhil~~mmkjjf_`^XX[acdbhfd^\YYUUUUWX[cffb`bedefijlliie]SJGE?=6-$#,23444444331*(&+4>EGNQ[djmmjca_bghlmmmmlihhhgillg^\ZYTLIGFA?86/,~%#")+,/68?BGILU_gllhfa^`be`^[\^\\___[Z[]^_glmmmmkd\XX_`^afe_[WWX_`_YY[[\__cghe_WSQPOOQU[\YXUUVSQQRQRRSTUWXYbilmmmjjiif^_^\[\[]\__cbhlllg^]_ad^YXWVV\]eige_a_]YYYYYY\^`ccdbhhbdb`cgcijjkg_^WTTSSTUX`d`bddbhjjhchijmliheafdafb`bec`]ZYZY[\[[^^cdbhid__YY\dgec\]\WRQNFCBBCCCB?>>=7.+$#()*+//000111111110/+)(#""""""""""'$)+,---07:ADLQSUYZZ^^aggffhlmlhf``ebe`^]\[\\[^gkjjmmlhab`bdjic`ba^`a_ced`]\\WWWWUTOF=<<<=?BCDEGGIQS\cdhebiklmmlib_^]\\]]b_ZZZZZ^^beed]YXXURRSUWWWUQPMLLLLLLU\^ZZZVNMMMKKKKKKLMMMNNNOVZZ[_`]UPOOOSUUXSQQQPPPQQQPOPQY_eedaddaXXXY\bdfeec_a`^_fjkf^___`^ZZ_ejeaff`ccahkjjhgcffhlmmmmkkmmmjjic`cjlkebghjeaeeaekkfd^[ZTTTVW]\^]YY\\a`_aa\[[ZZWWY[[bhkkiih`]^]YZYUTTRQRRRTY[\\[[X
last-align-1145/examples/multiMito.maf-67-p SUVY[\`ejosx}~~~~~~~~~~~~~~~~~~~{vqqpppppqvz~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}zvusppponmmmmmmmmnnoooooooppppqqqqqqrrsssttuwyy|~~~~~~~~~~~~~~~zvuuttsrrrqqrrw{}~~~}}}~~~~~~~~~~~~~~~~~~~~zyyyyzz{{{{}}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~zyyz}~~~~~~~~~~~}yywtpkkjjjkkkkkkopqvz~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~zupkfba_^^^^^]\\\\\\\\\]]^acdhmrvz}~~~~~}{wsrrqqqooooonnnoooqrw{~~~~~~~}}|{zxxxy}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|{{zyvutqmmkhgfedbbaa`^ZYXUQPPPPPPPPOOOOOOOOOOOOOOOOOOOOO~~~TY^cglqvz~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|wvtqmidcgikklllmmmmmlkhmqv{~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|xs~njefghinsx|~~~~~~~~~~~~~~~~~|{{{{|}|{{{~~~~~~~~~~~~~~~~~~~~~{vuuuuussssssssssrpmiihhhhiiiiiiiiiiiiiiiijjkklqvz~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}zywutrplgcbbaa`__^^^^]]\[XWVUUUTROKJHEA@?<;;;;;;::::::9865555555555555555555555555555555555589:::;;?CDEFGGHHJLLNOTX]bgkosuvvvwyy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|xxvsoonnnoqrstuuv{~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}{xtonnmlkkkkkjhedbbba``````__^]ZZZYYYYYYYYYYYYYYYZZZZZZZZZZZZZZZZZZZZZZ[[[\\\\]afjmnosuvwxy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{vvuvuvvvvuuuuvvuuutttttttttttttrplhc^]\XXVSSSRRRRRRRRQQQQP
last-align-1145/examples/multiMito.maf:68:p &(**,-26:=?@EINRVY[[Z[`cecadeb_bdc__ed`\[\dhjlkfdccdb`chc`cjkhcgf`a[VTTUWWTSSSTUVUUUWY``fgjf]^^\[ZYYYZ]]]ekmlibeggdb`[\[cgcikha]\^efefgkicgijg``degkkh`]YYZXXY[\[ZZ\[^\ZZVTTUUTUWWX[^egdagfb_`\ZZ\Z\]\]YYY\die_^XOOOQQVVWUSSNFCCCCEEKSWWXYZ[\^a[YWUU[\XVTTUYYZ[\[XWRRRZacjljjjjmlhgadgbekkged``^bilmjhe__dfaekjjkeab`fdaejgeb]\^^ciklmmke`ba`hkmmmmmlihilia^_`agicihghhbekligcfd`ddbilmkfbiicgd`dfghljkmmmmlljd~~~~~~~~~~~~~~~~~~~~bdd_^ciha^``[XXVW]_^a_bc]\ZTLJHHHHHHHHIJLNW^aaa^ZYYZZWVXZZ`eggb^^ZZZ_[VOLKKJJJJJJJJJJMU_gkh`^\[\]_a`cjjjlmmlib^_eijieafd`ddbhicgdadhijjigd^]^^^]\``_gkhga^^`_fhhdb`dikkebgebilmmmmmmlhfaa`_ba^^aahijkiciiijdacb^___egkkecahkjjljjibekmkklkjlkg`_]_bikigd]YZaehkihhjidadgacda]VPONNOPPRRQKB8888888888887777778888888;ACFGHHHFFEDDDDDDDDDEFHILLLTWWXYY]abcc^_^\]]ZYYXYURNNNONNNR[djhgc_a_\\]\]dijf^^^]`a_egijmmljdjljjjjlibekkjg`a`_bilmlfdccdfkjjiif^_^^aeadgghlmke`a`]UUUWZ[_dc`b`\\]\]agg_VRLJHCA?>>>>>==<;7/,"""""##%,/////00~~~022235:;;;:7/"$"$~$$%%%%,/68>@BIHF?=<;70/-*($$$$$$$##########&&&&%%%$&*-//0003~~<ACCCCCDEFGLOTZaca_YVTSNNNNNNPSSNNOQUVVWVVQOHGEC=<;::94,)%%%%&'(+/011113~8AJPYaehkllmkecahijmmmmmlihhhgillia_]\WOLKID<22/.!!"~###$&(/1689<FOXadda_`_ZZZZYVVWURQQQMFFEEEBBB@@@@@ACEJKPQQQOOPPSTTVUSSV^ehfaXOKIHHHJNUWVUV]b`ce^YXVVUUU\_gic__fhgc`ciid`df`bcd`XVWZcf`\[[[\XVVUTSSQRSSTWXUTQONNMMNOSUUVV]`]]_^b__fiihb^]`_fjkecahkhhijjmlkeadfdaba]TRPJHFA>>>>>>>>>>>?@@BCEJKOPQQRRSTWZZWRPONOPOORTY^dgkkeb\SI@???=;;95444444444444555555?FJJJJKPV~WYYXYYZ[]`eaegbegciljig_``a`djiiebijf]]\[[\\[^gkjjmmlibegghkha[YSPPPVY`bffb^\[XYX[[WUQQQUVXXZ\`^^YUTOLLLORQPOOPOPQRTW__XVVVVVVYbebedada^]YWWZ[YZZXX\\[[Z[]^\][XWVQPOOOLLLLLLLKIHHHHHJNOQY]chgb^_cba_YYWWVTSSUUSSUU[\YTRRTUVX]bcehhgeea[[YWVW^cd^``adhc`cjjc`a`fhdaea^_^ZZ_`ab^^ahjjmmlihf`]VSSSTTUUTTRRSSTTSSSRPMHGGGFGGGGFFFEB?;:88876655555554444444444443333333333321/,(
last-align-1145/examples/multiMito.maf-69-p $&((*+/48;=>CGLPTWYYZZ_cfghlnoprssssuuvuvv{~~~~~~~~~~~~~~~~~~~~~~}}{yxxy{}}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}xwwvvvxxxxxyyzzzzzyyyyxxyyz~~~~~~~~~zzxxxxyzzzzz{{{{{yvvtqqqqpqppppponnnnopqtuvvw|~~~~~~~~~~~~~~~~~~~~~~~~~}}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}|zzzzyyxxxvvusoonnnnnnoooooptwxyyywwwxyyy{||}}}{xttrrpponjjjjiiiiijjjjklpuz~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}xtojfa`^[ZYVRNIHHHHHHHHGGGEEEEEEEEDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEEEEFFGIKLOQRVZ]_``abbccccddeeefffhhiinswz}~~}}}{{|||~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{{yvvtqnie`[VUTPLLKKKKKKKJJJHHHHHHGGFEB>=;8866666666555554455544444444444~~~44444444444444444~444444444444444444433110.-,,+++++++++++++++++++++++035777889~~999999999::;;<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<;;;;;;;;;;;;;;;;;<<<<==>~CHMQV[`dinsw{~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{vqqolgjl~mmnrw|~~~~~~~~~~~{vqpokkifb^]]\[ZZZYWVVVVVUUUUUUUUUUUUVVVVVVVVWWWXXXXYZ[[[\\\[[[\\\]^^^^_bcdgiijkkmmnnswy{{{|~~~~~~~~~~~~~~~~}yxxxxwvsssrrqppommmlllllllllkkkkkkkloqrssssssttttuy}~~~~~~~~~~~~~~~~~~~~~~~~~~~|xwurnjigd`[WVUUUUUUUUUUUUUUUUUUUUUUUUUUVVVVVVVVVVWYY^bfhijjjjjihgggfddb`__________________bdddeefjn~qsttuvwx|~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~||{yxwwwxxyz||}|||zzywvvwwwuuuvvw|~~~~~~~~~~~~~~~~~~||zwwuuuvvuuutttttssssssrrqqpnnnnnnoooooooooooooqrrsw{~~~~~~~~~~}|{zywwwwwwwxxyyyxxxzzz{~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{vrmhc_ZUTTTTTSSSRRRRRRQQQPNKFFEEEDDDDDCCB@<876555332222222221111111111111111000000/-)%
last-align-1145/examples/multiMito.maf:70:p :?DHMRVXZ[_beec`b`ca^^a_cd]]]\Z[ZYTSRRRSUW`fhljca`_^``^cihfadfcggbfa^^ahgaXXXWY[_`acghhbcahkkfd^^^]ahjecaggbdgaehhgeeaejjebfe]\Z[ZZY[\_dc_bdjhbegfghc^^\WWXWVWXXWWVWVWWUUTRRRQQQSSSV]`^_^ehdad_`fedddac_YY]eid`cc`d`[[bee_XXYY[acahkllhe`\\[Z[^ZZZZZ_]__`_bb`_^\^[[[ZZ]][\[\\\]ZRRRRRYZ`hkged``_bilkebeaejkllh`]^]_`_ed`eklkg_`_[[\ZZ\]cb`aa_ed`dcaea^`cjlkeba`ghcihggebhhbdb^]_^cgcilmmmmkebgd`deeebghlmmmllidjjjkg`a^^bfcZWVVZZ\[YYYWWXXVRKB?>====>>?@@ACELNSTUX]]^[WVUSPOOOPQQQRSTSSRQRTUUX[[\\ZWWYY]]ahhaccafdac`bcdbilmjcZWUTTTVWUUW]ahkllib^_ejlljjkhcilmkebfc^`_]_afhidacbbbdcb`hkhfa]]_^a^\]^_bilmkklkklibefbeeaba_egjfc^^`_gijkicgd`b`fed_``aba`ghghje\YWVVUU\]ab`hiihd^\]\^ahf_ZYYWX[_ejhhhkjeadfc``_[XVVTTUWW]`fd]SJ@>64-******''&&&&&&&&&(*,.8?AHKKKLMNONNLKKNNMMIIHHGGGHHHHHGFFFHKKLNOOPOOOQRXZ]__]`hkh`\[\`eb^^\\^^eidba_dkljjjjiciicjliiebhhbeklmljihb\\~~~~~~~~~~~~~~~~~~~~~ce`]^bilmjc`YY`bhhchje`a\VSMMLLLMMMMNOR[dihfaYWVTTW]^cedba`^YPG>;420*('''(*0144<??@=6-~~*(#%&'(((*-6?EFIS\ekllh`WVUQIGA8775533321+)))~~~~~~~~~'&&&&%%%$$$,5:;=>@BCEEHMORR\dhgffdaccc`bc_XPOPRVVWXY\^VMJHB90-+*)%$$$"""###########~&09@BBKT]bejkihiljjlh_\[ZZ]_ddfkjcZWVQONLLKG?=;:9~42!!!!""""""""##$$$$$$$$$$$$$$$$$$$$$%%&&''(*,--..//000000001114<ABCFFFFFFMOPX[ZVTRQQRX`dadbfhjlke]\ZZ\]^`_gieac`bdhimmlgeea^`bhf__cjmmkd`bde^[[ZYY[Z[][VSRPPPONNNMNPTXZ[]dd]\\[\\]ehhf`[ZZYYUUWXZbd`aba^``ghciif^[YXWVSQONMLKKLKHHHHGGGFFFDDCA@@?@@@ABCEEFFFFFGHHHILRU\^]bec\SMFFEEEECCCCCCFOTUTSRRQQQQPPSSY[Z^]ZZZ~^ccca]][Z]]\]^XX\dhb^^``_^]\^]cedbikg^\ZYVVWX]bb^^bhkjcihhikic`a_[[ZZ\[ZTQJIIIJJKNQS\aa_`_cb^_]ZYYXYYWWW]eikmmmjca`_^]a^_YVUTSSVZXPLJIHHHGD?=<752+%#""######$$&,-0024445566666777777@EHIKMU[[[\\_bdc_WVXXZXY_ae`b`ejjca]__]]accc`ceeecba\YYcjkh`_^]]YVVYbgebilmmjjjc`ba^^cdfiebikigcikfdb^XVOOOOPUY^^\\YXYVVQOOPPOPPPQRQPPOONNNNMMMOQVWVXWW\^agiiebhje`aZXQNNNNNRSSTTVVUTOM
last-align-1145/examples/multiMito.maf-71-p 9>BGLPTWYZ^befgghhiiijkknoprssstttsssstttuz~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{zxuuttttuuuuuuuvvuuutttttuxyz}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}}}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}|{zzz{}}}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~||}}|yvuuvuvvuuutsssrqnjiiiiiiiiiiijjkmoopptwxxxxxwvtssstttuvvvvvvvvyzz}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|yuqpnnmmmmmmljgb^YTTRQQQQQQPPPPPPPPPPPPQQRRRRRRRRRRRRRRRRRSSSSSSSSSSSSSSSSSSTTTVWXYZZ[[[\]]_`dfhilnopppppssttttuww|~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{zyxyxyzz}~~~~~~~~~~~}~}~~~~~~~~~|xsnje`[[ZZXUUUVVVVVVVVVVVVV~~VVVWXXXXXXY^cgkoqrrrrqpnjigd``^[ZZZYYYXXXWWVV~~~~~~~~~VTTSSSSSSSSUUUVVVVWWYY\]]_`ejnswy{|~~~~~~~~zzzzzzyvrrpmiddb_[VUUTSRRRRRSTTTTTUUUUVW~[`dgijnsx}~~~~~~~~~~~~~~~~~~~|ytpkfb]XWWVURNJEDDC~B?;;;;;;;;;;;;;;;;;;;;;;;:::99999999999999999999999999999999::::=???@@AAAABCCCDDDDDDDEHKLLNOTX[]^____`bcdefjlmnpquz~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|{|{{}~~~~~~}||zxxxx|~~~}}}{{{{{{|~~~~~|||||||~~~~~~~~~~~~~~||{xuplkkjhfb]\[ZZZZYYYXVVTRQQQQPOOOOOOOOOOOOOOOOOOOOOOPPQRRRSSSSSSSSSSSSSSSSTTUY[\]]]^^^^^^^_`aabbcccd~hkmnooooprssuuuvz}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}{xxvvvvusokjjjjjknoprttuuuvwwwwwwwwxxwxx}~~~~~~~}xsnjedbb`^^\ZYYXWUQPPPOOOOMMMMLJGCCCCCCCCCCCCCDDDDDDDDDDDDDEEEEFFFGJLMNOPTVWWYZ]_`aaaabbbccgijkmnrvz|}}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}zvrmhhfeeeeeeeeedddddddddddddddddddddddddddddddeffgghkmnooonnnmlihgda\[[[ZZZZYYYXWURN
##############################################
last-align-1145/examples/multiMito.maf-91-p KLLLLLLLLLLLLLLL~~~~~LLLNOPQRRSX\`ceffffffedb_[VUSPPNKKJJJJJ~~~JJJJJJJJJJJJJHHHHHHHMQV[_dgijklmmnnnopqqruvw{~~~~~~~~~~~~~~~~~~~{zz{~~~~~~~~~~~~~zup~~lkifba_``````````aehjkpty}~~~~~~~~~~~~~~~~~~~~~~~~~~|wwvvtqniddb~bgkpuz~~~~~~~~~~~
last-align-1145/examples/multiMito.maf:92:p ^VMJHBBB?96/..-+"%+-+"%,/00123468AJPX[cdcc`WTOMGE@>7.,)(((('"$'"%+-.........+##*--7@GINNPRSUXYXXYYWVVVUU]cebhhe__cjlihcilihilmlh`bafhghjjiigd^TKA:1!!!!"$%(~09BIKMNNRTSRQMMMMNPQVWWVTTRRQQSUXahiiige`\WRMIDCCCBBBBBBB~AAAA@?=:51,++++*)
last-align-1145/examples/multiMito.maf-93-p NNNNNNNNNNMLKJJIHHHHHHHKMNRVXYZZZ]^^^^^^^^^]ZWVUTSSRPMIHHHHHHHHHHJKLLLLLLLLLLLMNOOQQQQQQQQQQQRRRRRRRRSSTXZ\\_aabcglpsuvz~~~~~~~~~~~~~~~~~~~~~|wsnid``aaccdd~imqstuuuxyyyxvvvvvvvwwwvttssrqqrrrqpmie`[WRMHC?>>===<<<<<~<<<;;:840+'&&&%%#
##############################################
last-align-1145/examples/multiMito.maf-101-s fuguMito 5313 2494 + 16447 CCCCGGCAGACGTCAATCTGCTTCTTTAGATATGCAATCTAACATGTAA--CACCCCAGGGC---TGATAGAAAGAGGACTTAAACCTCTGTATATGGGGCTACAAACCACCGCTTAA---CCCTCAGCCATTCTACCTGTGGCAATCACA-----------CGCTGATTTTTCTCAACCAATCACAAAGATATCGGCACCCTATACCTAGTTTTTGGTGCCTGAGCCGGAATAGTAGGCACAGCACTAAGTCTTCTTATTCGGGCCGAACTCAGTCAACCCGGCGCACTCTTGGGCGATGACCAGATCTACAATGTAATCGTTACAGCCCATGCATTCGTAATGATTTTCTTTATAGTAATACCAATCATGATTGGAGGCTTTGGGAACTGATTAATCCCACTTATAATCGGAGCCCCAGACATGGCCTTCCCCCGAATGAACAACATAAGCTTCTGACTGCTTCCCCCAtccttcctccttctgctcGCATCCTCTGGAGTAGAAGCCGGAGCGGGTACGGGCTGAACTGTTTACCCACCCCTAGCAGGAAATCTTGCCCACGCAGGGGCTTCTGTAGACCTCACCATCTTCTCTCTTCATCTTGCAGGGGTCTCCTCTATTCTAGGGGCAATCAACTTCATCACAACCATCATTAACATGAAGCCCCCAGCAATCTCACAATACCAAACACCTCTTTTCGTGTGAGCCGTTTTAATTACTGCTGTACTTCTCCTGCTCTCCCTTCCAGTCCTTGCAGCAGGGATTACAATACTTCTCACTGACCGAAACCTAAATACAACCTTCTTTgacccagcaggaggaggagaccccATCTTGTACCAACACTTATTCTGATTCTTTGGACACCCTGAAGTCTACATTCTAATTCTCCCTGGCTTCGGAATAATTTCACACATCGTAGCCTACTACTCGGGCAAAAAAGAACCATTCGGCTACATGGGCATGGTCTGAGCCATAATGGCCATCGGTCTTCTTGGTTTTATTGTATGAGCCCACCACATGTTTACAGTCGGCATGGACGTAGACACCCGAGCCTACTTTACCTCTGCCACAATAATTATTGCCATCCCGACAGGAGTCAAAGTATTTAGCTGACTTGCAACCTTGCATGGAGGATCAATTAAATGAGAAACCCCTATACTATGAGCCCTCGGCTTCATCTTCCTATTTACAGTGGGTGGCCTAACCGGAATTGTCCTAGCCAATTCATCCCTAGACATCGTATTACACGACACCTACTACGTAGTTGCCCATTTCCACTACGTCCTCTCCATGGGTGCTGTATTTGCAATTATGGGTGCATTCGTACACTGATTCCCACTATTTTCAGGATACACACTCCACAGCACTTGAACTAAAATCCACTTCGGAGTAATGTTCATTGGTGTCAACCTAACCTTCTTCCCTCAACACTTCCTTGGTCTAGCTGGAATACCTCGACGATACTCCGACTACCCCGACGCCTACGCCCTATGAAACTCCGTCTCCTCAATTGGCTCAATAGTCTCTCTAGTGGCAGTAATTATGTTCCTCTTTATCCTCTGAGAAGCCTTCACCGCTAAGCGAGAAGTCCAATCAGTTGAACTAACAATGACAAATGTAGAATGACTACACGGGTGCCCTCCTCCTTACCACACATTCGAAGAGCCCGCCTTTGTCCAAACTCAAACCTCTATCCGAGAAAGGGAGGAATCGAACCCCCGTAAACTGGTTTCAAGCCAGCTACAAAACCACTCTGTCA-----CTTTCTTCATAAGACTCTAGTAA-AATGGCAATTACACTACTTTGTCAAGGTAGAATTGTGG-G-TTAAACCCCCACGTGTCTTATTATTA-ATGGCACATCCTTCACAACTAGGGTTTCAAGATGCAGCTTCACCAGTAATAGAAGAACTCCTTCACTTCCACGACCATGCTCTAATAATCGTATTCCTTATTAGCACATTAGTACTTTACATTATTGTTGCTATAGTCTCCACCAAACTAACTAACAAGTACATTCTAGACTCTCAAGAGATTGAAATTATCTGAACTATCCTACCAGCTATTATTCTTATCCTCATTGCCCTCCCTTCCCTCCGAATTCTTTACCTAATAGACGAAATCAACGACCCCCATCTAACAATTAAAGCTATAGGTCACCAATGATACTGAAGCTATGAATATACAGACTATAGCGACCTAGCCTTTGACTCATACATAGTCCCCACACAAGACCTGGCCCCCGGCCAATTCCGCCTTTTAGAAACTGACCATCGAATGGTCGTTCCAGTGGACTCCCCCATTCGAATCCTAGTCTCAGCAGAAGATGTCCTCCACTCCTGAGCCGTCCCCTCTCTAGGTGTAAAAATGGATGCCGTACCCGGCCGTCTAAACCAAACAGCCTTTATCCTGTCCCGACCTGGTGTTTTCTACGGCCAATGCTCTGAAATCTGCGGAGCTAACCACAGCTTCATACCAATCGTTGTTGAAGCCGTCCCCCTAGAACACTTTGAA
last-align-1145/examples/multiMito.maf:102:p VVUTTURPNKJJJJKLOW\\_]]aehkmjjihilmjjjihabagie][TSQKC:6.(%$#"!#"!/8@EKLKKGEC=5,)'%%(*/00249:<>EHQY[cfhlmjdZQNMKF>4+(&+~~~4~~>GQZ``^VOG>41/*+4<???<410*+4<BDEEEFGHIQWZ`dgbekjjkkhac_]^_^bikihikicgdafhhgc`bcacc`eihbekjjligcgebilmlhabdc`b^^a^`aaghcihcikjhd\ZZWVVVY`cjmmkeada]\^\^_^_`_dfe^WSQQQUWXX_ecaZZ^_gkihd`ddaeklihcijjmmmlibegcihhilmlh`abdhc`cihhd`bejjjmmmmmmkkljc`_aeaejihebghljjlhghgf`cekmmmke`b\YYYYahjjljkmligcgdb``_gkkkhbdc[YXVWWW^c`digfebeebhjiif___^bjmljc`cfdc__][[YTSTTTUUUUUVVVWY[cghgc[[``djlkg`a`^acafhlmmmjjjjmlhgbekjjmmmmmmjda`ZYWUUZ__XTRPMLKFEEFHMOQUVVXZacjkebgebilmmmkkligb_bc_bdie\ZXXX`c__bjliceb`bb`bbagijjd`bdhdb_cb_bcaeeca`_ecaeb_adadhilmligcgf_`acdcbccbijjmlihd`ddaffaegfggaa`_beaba`gkmmmmmkjlg_`_]_`_fgfeb^_][[\[[[ZZ[ZZ\^`ebggaceklibfkmkebhicgilkfc~~~~~~~~~~~~~~~~~~~~~~~~~~aceig`]^^\^agdcagg`abdiebghljjjdb`dgb`_^`fgjhchkiiebhhbegcgilmlia^YYYX[[[digffcijjlihillljjlkkmmjihacejhfaba_efgfa^`a^bb`dge`a`eb`cjjjmmmmmmjjihecbbbcejihca[[[[`a`eebfjkhfadfaehcilmliadeadfchhbehijjjca_bijdb`defjeaeebgklkeaeiihgcgiiecahklmmlihc`cjljdjlmmmllllmmmlibdc[\\[bb`fdagdagdbhkiiebilmliac`]^^^fiihgcillihilmlihimmmmmmkebfb_bc`cfbejkhga_``fgkkeaefglmmlif`a`db[[aaggcilljca_bhfe__]YXRIHHHHHHNOQWYYbdafhkhfbegbddaddadhijd`bdf`_]_bilmmkeaddbilmmmmljchebikllgbffbilmlichebhklkeadf`bdhilmmmljc`cjmmmjihaceklibfebefgjebilmmmkebhge``^]^cfkmmmibXVTTTTUX`ba_cjljjkfbikihilljf^]^]``]_ZY[VTTTTTTVY_^bcfabahlmmmljjibebefcijdb`[[cghhacejjigfechiihbYYYY[_^`bfgd`bb`fgiihaba_dkmlibfkmlibekmmkeba`hlmlibeklljjmmmmlhgfe^UUVYZ\^^dhhchkihcilkecaghghhcikjkmmliab]YYYUUVWZ^]^^Z[[[cfaegghlkic`cggdcahkjig_``_fhd`bdf`[[\ZXX]_^ZSQOOPPPQQRSSTVYYZYZ\\`a`hllia[[chhgcijda`^adhecaghbejllllkklib_bcc^ZSSSSTTTV[~~~~~~~~~ZYXWSQQRSTUWXW\]`egiijjjjmmlhgb`^^]\]]\[\afghgilkkljife__^bfe__dee__ehicgc~~~~~a`_cg~~~~~c`\^^]WTMDB:1!!!"""##%''(1;DKNW\^`hllihikfd^\ZTQKB9/""~$$%%+,/7~~~~~~~?CDDDDC=41*'*38:<<<ABCFJKLMPUWY^^dflmmmmkkmmmkebhhbdfeegkkebiklmjjmmlh`]^^XXVUUUUXaimmmkifaa_cfbejhgb^^bbcefe`^_^ZZ__YWWWZcjljgeacb`ZXWVVUTTT\dfebd_a`cijjlhffhllifc[[aggc[[Y[ZUTUV^egchgcfb_bba_a`ggghgfab`djjjmljc`cfaa`_da^^b`diec\YZacadaddagd`dgdba_ed`djmmmmjc`bb`cebfhggcilmlib__gkhfaXXUUUTRRQQRRUZ[[\[[[ZYZZ\`^_^]`hijjjkfbilmmlhgbekmmkebggcfdbillhaXUTSRQQSUUTT\^\[[]]ab`febee`XVTTTSTVUSRRSU\`gd`bdffbeebfc`cgcilmlibeebgebijjliceeaekmljcheafe_aa_aa_a][UTTUUUWXX[djkic`cggdcahkjf``eglmmlib_``ekmmmmmmmmjdijdba`\ZYXYYUSLLLLMNPRZ\djljc_`[XXXX]^^afcikgeeac`^\\[\^[[\[\[YYZVVTTYbhed^]]]\`febikiceeaehimmmmmmlhggdaekljjice`bdhhhcgd\\\\djlihikebhkige`\WRNMKJJJHFCB@;740,++++**)(
last-align-1145/examples/multiMito.maf-103-p hgfeeeeeeeeeeeeeefgghhinsw|~~~~~~~~~~~~~|{yyxurnihfc_[VQMLKKKKKKKPTWXYYZZZZZYYYXXXX]adfgkortuz~~~~~~~~~~~~~~~~|yuqlgcc~~~c~~dddccba^ZUPLGB=99999999999<>?@@@@@@@BCHMQUXZ[`dinqtvvy{{~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}|}||~~~~~~~~~~~~~~~~~~~~~~~~~~~~{zz{~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|yxwttsttxz{{{{}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}|}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{{{{{|}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{zzyxxxwwuqqppqqqrsuvvwxzz{z{|}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|xwwwxyyy|~~~~~~~~~~~~}zzz{{}}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{wrnimqstuvw{~~~~~~~~~~~~~~~~~~~~~~~~ytokfa\\~]]^^__`d~~~~~~~iloppppponkgijjkkjjkkkklllmprttvw|~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}}}|}|}}}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~||{yxxy}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{xwwwyz}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}}{z{z{}~~}}~~~~~~~~~~~~~~~}zyxwvtsssrqqrrw{~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}{z{z{zyyzzzz{~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|wrqplhd_ZVQLKIIIHGEBA?<94/+***))(('
last-align-1145/examples/multiMito.maf:104:p (+.//000000000000012334556:=?@EJNSWZ[[_ba_chkia_\]`fd\YY__ce`X~~~WZWWQHEECBA=5+('&&+2445566666789::<>HQVWTKHAA?8753.%"+%"/~~8?BBCCBBA@>7.+)#*---++)#*---.6;<=?FIQVZ\[bhgbekjjkkhaca^`cgillihilmmmjjhf`bcacb`djihd\YYY^ahjihcikke`bb\[YTTTRQQSY^cjlmlicfc`cihgc`bb`cgikhcgdafdahg_`a`cih`]WUTNNMMOONNQXZZXX`hkhacb_cc`ekligcgc`cjmmmmmmmlihilmke\\\\dgbekjjmmjjkecahkljc`cjkihilmmlibfkligcghjdb`cc`bdkmmmmmke\YYYY_`^ahijmmkklkdba`_ffbeeade^]\Z[\^`hlmlhffbghlmmkkmmkkmmmmlib^`_bdigfec\WW[acdahkjjicihbdb_`_[[`aa^^cc^`_^ab_a`^bc`ddadjkge`a`_bilkeadf`]\WWWWY[dha^]\XVUPMMMOUWZbc`djhgcgdbgebilmmkeb[QKHB?83-*###"""#$$&)2<FOW]dhhdadghha^_YVVYaca_dhilmkdb[\\[djlkg`a`_adbhlligchjfedeb`_^^]_ZWW[ZZ]\`filmjjhghhbddefhcgillidimmmkkmmjihaccaggbc\YZbgilmkebhkif`\\XTTVVWWXahjjmmmjdjlkecafdafdbhklmmlib_ab`hkjjmmjjihebghlljjjebghljkmmkdba`edafhljjljjllib_^\^`_~~~~~~~~~~~~~~~~~~~~~~~bcekjkmmkeba`gjjlihhhbea^`a`gkjihacejgfacekjjjjlihd`dfeec]\^]dfdadaejkhbYY[[abcbaabcekjjjjkecafhlmmmmmlhfadfbekmmmmkeadb[[aagkiheaeebghhhd_`^]__^edaeebgklkeaeijjlllljecahkllg`_cghhbekmmmmmlkieaeklkebfc[\\[bb`fdageafc`cjjjmmmmmkfbhha_]\]_]a`]]_^cdfkhaba`hlmmmmlicgb_bc`cfbejia^XTTSSRSVY[acde^ZTRQRSSSUUV_fjicilmlihilmkklkkmmlib_]^_]acihb]]_^cdbegiihadd^__^`a_ec[YZZbe`bdkmmmmmmmmmlhcfc_a^^acaghcjllkebillkicfdaggcgdaekljjjjmmmmmmmjjicikjif^__^bfbgc_abdjihe]ZZbhebhgfaa`^`]^bikmmlighgffghcghhchkjjib^_ceghlicea^\\[][[WVW[]ZXVUTU\beed^UTTTVW]cdba_c`dgfbe`^_``dhdb[XXXX]^__^]bghhbYYYY[_^`bghkhab`fgiiiceeeglmlibekmlibegbeidba`ghcheaeca[SPPQZcihgffb[[ailjeadc_^bafhlkeaddadfffe__fhjlmkfbikheaYY\`_b`bb_bdjjd[[_^billjkljjjhd`a^]`]___gjhffgid^^\WUUWWXZ^]\VSSSSTUYZZUUVWWY]\_`_fga\\YZbghgcih`]\YYYWYZZcijjkkjebghkhecb\ULC996554333~~~~~~~~~211-"#%"#&.234579BILSU\_eklib_YVTRRQQSTZ[^degghhfa_XUSME<22/-(%$###"""""""!!!!!!!!!!~~~~~#%%',--/18:?@~@@@@@@@BDEEOWZVONNPSZ][TQKKKKKJJHB?96/~,""$()*+,/~~~~~~~57:::::94,)%'(((((((((((+024:<?GLMMMMOQZacjljd\XX\[^_^^^]fkmmmmmkjllke^XVUSRRTYZZ^dbhhbekllihhichhb\[TPPOOOOOOQVXY\aa]\]\`gif__YVUSLLKLLLLKKLOPQTUYZXSPMKIHHHFDB>6-+"$("$*,.5778889BKPQRUU]`_ab`^`]^XUSSTW`fkljiebiljjicffgjebfb__fijmmmlhgbZY\[dffhjdba`gggge^_]]`hihdaekmmligcilmlib__fhbejh`XVTRRSUY[[cca_b^__`__^acaddaejjjjjkfbilmmmjjjjlichebikkjebhhaXOMGECCCCCDCCCDHIKMV`gijmlkf`XRPPQQQQUUVWXY[`a`YWVUVV_efdae`]^^`c`dfaddbgebgebiic`cihbYY\[cgdafdba`febhgfbdccdfkjjjc\[beggadc^_^[Z[Z[^^fjmlib_``ekmmmmmmmkebfd\\\\ZYXXYYYYXY\_``adjlljdijdb[YYYY`bjljdjkgeeadffgfd_^]_afd_`_`^cdagkkfd^^^]`a^^\]ahkihcijjmmllicihhilmkicgillhaceiilmlh`a`gkicffgid`ba]\^]\YUTQQQQQQQQQOLHC?:998740+'
last-align-1145/examples/multiMito.maf-105-p %(+,------------..//0022337;==BGLPTWYZ^acchlprssstvvwvvvvvvvvu~~~uutttsrqpnkfb]\\[[]^________________````````````__^[XTTTT~~TTTTTTTSSRRPNJFA@@@@@@@@BDDDEGHHHIKLPTWYZ^acdhmrvz}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}zyxutttttuy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{zz{~~~~~~~~~~~~~~~~~~~~~~~{vrmljgc_ZUPOOOOOOORTUZ^chmqvz}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|||{|}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}yupooooopppqvz}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|{yyxxwwwxyyxwvwwz}}}}{xwwwyz~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{vuspoooooopppppppqqqsstttuuuuwwz{|~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{zxuqlhc^YUPKJHHHGGGG~~~~~~~~~GGGGFFFGGHLOQRV[`einsx|~~~~~~~~~~||zyzyzyzyywtpkfb]XSOJE@<;9621100000000000000011111~~~~~1111222238;>@~ADFGGHIKLLMMMMMMMMNNNOOOOOOOOOOOOOOOON~NNNOOPPPPP~~~~~~~PPPPPPPPPPPPPPPPPPPPPPPQQSTXZ\]`bcdddfglquy}~~~~~~~~~~~~~~~~~~~~~~~~~~zuttssstwxy{}}~~~~~~~~~|wsrpmihfccbbbbbbbccccccccccccccbbba`_^]]]]]]]]]]]]]]]]]]]]\\\\\\\[YVRQOOOPPRSVYZZ[[[\`cdegiilmnpqrrrrsssssstx}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|yxxy|}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}|zwsnnlkkkkkkkkkklmnnotx}~~~~~~|wsrrrqqqqqpppppppppppprsw{}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|{{{{}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}}{yvusplhcba]]]\[XTTRQQQQQQPOMJFB=877752.*%
last-align-1145/examples/multiMito.maf:106:p abcehike_ZYY[]cdbilmlhgbYWTSSV[[_dd`]VPNLGEC>5+)'&&)--../0225<~~~@@AAA@@@@@@?;41+''')-../022233348:;>GOSTTTURQKHGA8/%%~~~"$",/8@DEEDA99641.&$######""""##########"*,-08=?DFKNVZ\\__\^_^bikihikicgdadd`aa_djlmljjibYYXZZZ_``fdbilmkeaefc`c_`fkjkmmmmlicikjjg`a`^afhljjkeaehijebfd][\[]]\]\[]ZWROOPONNOPQSTV[]eijiicilmmmligcgc`cjlkfbikllihimmmmkecahkjihacb_bdiecahklmmkkljca_billhaccafhljjlhggdb`fhlmlh`b`[YWXXX^`^ahijmligcgdb``_fgcikihc^][Z[\]_dadhd~~~~~~~~~~~~~~~~~~~~PPPPRRRVVWZXVVZ`beacb`cilmmmmljc\YY]^\]bdd_``^afhjjlkh`ab`df`ab`ejjjicgdaejfed`_^^]`hjd[ROMMLJJJJKQSU\^\_^__\_^]^`_gkmmmjjibeijmmlifd`YRRSS[`^`a`hlkeb`djlljjllicZVVZbdccdb`cjlhfacekmmmmlhgc`bcaecaddbfe^^^]```abafb_aa]\^]afilljjhggd__^\^^]_bikicikicghib^^bfgebhhchhbe`\]\\]\[\]\^_^a`^a`^`cjmmjiebhhchhaba`fdaffaejkkebggadfciljihacehhg`aa`ca_bghjjkecahjdba`edafhljjljjlmkfdddaXUUWYafijjjljc`cjjjmmmib_Z[[[`aahkihilmjjkeadgchijjc`bb_be_abafhljkljjjjlihd`bb_cdbedbhje``_bilmmlh`]^^\]]^_`bijjjjjdb`decilmkh`abbilkkmmmmmkebffabb\[[Z[ZVTSNMMNOQQVWX[]_fdaeebgklkeaeiihgcffbefhlmmmiceeadgbekmmmmmlkieaeklkebfc\\\\dhhjebgdafc`ciihebgdagebhjdba_dcaeecillihilmlihimmmmmmkeae_\]\WWY[ac^\YUPPMMMNPRT\`bfc^YWWWXWWXWX]]cebhlmlihhicffcgilmlia_]^^Z[[[ab`fgacekjjjjibddaddadhikf__ciha^_``djlkeaekmmmmmmmmlibfkmmmmmlkfbilmmmmkebgdafd`df`bdhilmljdjljihcfc`ce`abahlmmmlihhic`cdaeb[[[YXVW]_c`a`gklmke\YXXXX`hjdb`djligchecb`]^^YXXVTTUWXWXUUVYZ_`adjjig`aa^UTTTVW]baehlkeaeebgg`ab`ejhgb_aciiigfechijlljc`^acaddadihab`fgiihaba_dkmlibekljc`cjmmlhffhljchebhjf__]ZZcijdb`[SRSSY[ab`cb]]_^dgllh`\]XY[[afhig`\\\`giie_[URRSTUXXXYXYYY_`]]_^djlljkljjihc^^[[]]ehlljd`bdie]ZSSRS\b`]\XVOMMLMMMMOUVZ[\Z[]\^^^fkmmkhceaba`gic`_]__^_^]`hjjlllllkjjd\ROI@>;61*((&&%%$$##%&&&%##$$)*,../58>@GMOTUUX^afhlmlgf`^\[[XWXYYbijjhhilif`WNE<9211/-,++'%%$$$$###~~~~~""""""""""""""""#######~####$+-6=@AINOPVZ]cgkjd[XVVUSSUUPNLLHH~G~BA;860-)'(****(&')**+,,-/2~9<ENUW]^^\\[]aaeggcgcZWUUXXafhkicgd\\cfea]]]YY]]bikljiha^]XPNLKKKMSTV]cbhhbegcgc`ceaejjjlh`a^achiiigaZZ^\VTTUYbge^^ZWVSLKIHHGGCCCCCCEGNPWYXYXYZYZ\^gkjjlha]WUSRRTWVRNNNXahhchjic_bb_bb`fedb^]^djlmkkmmmmjjhaba`edafb_`[YYXWW`fglmkebhhghkgeeadgfghbdgadb`bffgjebhhgcilmlib__gljjliaXWVVTTUYZZ\\\^b`ccdadadcaddaejjjjjkfbilmmlhgbejicheaedacbahllie_^baZWWY^][\^_^\]`hjebilmljd[YWWWWW]^\[]\]cee^^[Z[\\aa_]][[]]_a]^]YXXX^\ZZZ`gic`cjlje`b_`_XVVUUURRUUVWWY\]^_bijjliacd__c`]]ZZbfchhcghkicihb_``eklkfbilmkfbijfdcb_`[[afca[Z_a````^^biljc^^`_cdegfbekmmlhghge`^\WOMLJJJJJIIHHHILLU^edb]]]\^^\^^fkmlhgbeiimmmmmmlihilmkicgillhaceiilmlhacekkg``_]_a_[WRQQQPPOLKKKKKKKKJIGCCA>===;951,
last-align-1145/examples/multiMito.maf-107-p ~~~~~~~~~}|}~~~~~~~~~~~~~~}||}~}~~|zvrmmlljjifcba^^___________~~~_____^^^\ZWRNIHFCCCCCCCCCCCCCBBBBBBBBBBBAAAA@????><99~~~744444444444221/+'#""""!!!!!!!!!!!!!!!!!!$&'*-..016:>ABCFGHKMNRW\aeikmnprruww{|}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}yxxyyxxyyz{z{|}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{zxuutuuz~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}}}}~~}}|zwvuttuvwwxxxwurnmmmmmmmmnopsuv{~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~||zwvvuttttttttttvw|~~~~~~~~~~|xwwwyz}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|wvvuuuuuwwyyz{{{{}}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}|}}|zyxvrqqqpppppqrtuuuuwx{}}~~~~~~~~~~~~~~~~~~~~~~~~~~~~}xtojea\WRNID?>=95100/////////////011256777899;<AEIMNOTY^bglqvz~~~~~~~~~~~~~~~~|xsnie`[VRQONNNMLLLLLLLKKKKKK~~~~~KKKKJIIIIIIIIIIIJKLLMNN~NNNNOPQTVWXYZZ[^`aaaaaaaa``_]]]]\ZVVTS~R~PPNLHDCA>>>>>>>>>????ABGLP~UZ^cgjlmmnnnopquxyz}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|yyyxxy}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{vqpponmmmnnmmllkjihfeeeeeeeeeeeefghikllnortty~~~~~~~~~~~~|||~~~~~}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|||{|~~~~~}}~~~~~~}}|{||}}|}|{z{{{{zz{~~~~~~~~~~~~~~~}|}|}}||}}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}xxwwwvuutssrssuvz~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{zxuqmhgeba`]YUPOONNNLJIIIIIIIIHGEA@?<;;:973/*
##############################################
last-align-1145/examples/multiMito.maf-113-s fuguMito 8292 2075 + 16447 TCATTAATAGTGTTCCTAATTACCATCAATATGCTAGGACTCCTTCCATACACATTCACCCCCACCACACAGCTTTCCGTAAATATAGCCCTAGCTGTACCCCTATGACTCGCAACAGTAATCATCGGAATACGAAACAACCCAACAGCAGCCCTAGGCCACCTTCTTCCAGAAGGCACCCCCAACGCTCTAATCCCTATCCTAATTATTATCGAAACTGTCAGCCTCTTCATTCGACCTTTAGCACTAGGAGTTCGACTAACCGCTAACCTCACAGCAGGCCACCTGTTGATTCAACTAATCGCTACAGCTGCTTTCGTACTCCTCCCCCTTATACCAACTGTCGCCATTCTGACATCAACCCTATTATTCCTCCTGACACTTCTAGAAGTCGCCGTCGAAATAATCCAAGCCTATGTTTTCGTACTTCTTCTAAGCCTCTATCTACAAGAAAACGTTTAATGGCCCATCAAGCACACCCATACCACATAGTAGACCCAAGCCCATGACCCCTAACAGGAGCAGTCGCTGCCCTTCTCCTTACATCCGGCCTAGCCATTTGATTCCACTTTAACTCAACTATCCTAATAACCCTAGGACTAGTCCTACTTTTACTCACAATACTTCAATGATGACGAGATATCGTACGAGAAGGCACATTCCAAGGCCACCACACCCCTCCTGTCCAAAAAGGCCTTCGATACGGAATAATTCTATTTATTACCTCCGAAGTATTCTTCTTCCTTGGCTTCTTCTGAGCATTCTACCACGCAAGCCTAGCCCCCACTCCTGAATTAGGAGGCTGCTGACCCCCTACAGGCATTATCCCCTTAAATCCCTTCGAAGTTCCCCTCCTAAACACAGCAGTCCTACTGGCATCAGGAGTTACCGTAACCTGAGCTCACCACAGCATTATAGAAGGTGAGCGAAAACAAGCAATCCAATCCCTCACCCTGACAATCCTTCTAGGTTTCTACTTTACATTCCTGCAAGCAATAGAGTACTATGAAGCCCCCTTCACAATCGCAGATGGTGTTTACGGCTCAACCTTCTTCGTCGCTACCGGCTTCCACGGCCTTCACGTCATCATCGGATCAACCTTCTTAGCCGTATGTCTGCTACGACAAATCCGATTCCACTTCACCTCCGAACACCACTTTGGCTTCGAAGCAGCCGCCTGATACTGACACTTTGTAGATGTTGTCTGATTATTCTTATACATCTCAATCTACTGATGAGGCTCATAAATCTTTCTAGTATAAAGTCAGTACCTGTGACTTCCAATCACCCAGTCTTGGTTAA-ACTCCAAGGAAAGATAATGAAC---TTACTAACAACAATATTAATTATTACCACAGCTTTATCCCTCATCTTAATGACCGTCTCATTTTGACTCCCCGCCCTTACACCAGACTACCAAAAATTATCACCATATGAATGTGGCTTCGACCCCCTAGGGTCAGCCCGACTCCCCTTCTCACTACGCTTCTTCTTAGTCGCAATTCTGTTCCTCCTTTTCGACTTAGAAAtcgcccttctcctccccctcccttgaGGAGATCAGCTCCCATCCCCCACCCTAACACTTATATGGACCTCCGCCCTTCTAATTCTCCTCACAATTGGCCTAGCCTACGAATGACTCCAAGGAGGCCTTGAATGAGCCG---AAT---AGGTAATTAGTTTAATCAAAACATTTGATTTCGGCTCAAAAAACTAT---GGTTA---AAGTCCATAATTAACCTG-ATGACCCTCATCCAACTCTCATTCACCTCAATCTTCTTCCTAGGACTATTCGGCCTTGCATTTTACCGAGTCCACCTTCTATCTGCACTCTTATGTCTTGAAAGCATAATATTAGCCCTATTCCTCGCACTTTCAACATGAAGCCTGCAAATATCCTCCACCAGTTTTTCAGCCGCGCCGTTACTCCTTCTAGCATTCTCAGCATGCGAAGCCGGTGTAGGACTAGCTTTAATAGTCGCCACAGCCCGTACCCACGGATCAGATCACCTACAAAACCTAAACCTCCTACAATGCTAAAAATCCTAATCCCAACCACTATACTTATCCTAGCAACATGA
last-align-1145/examples/multiMito.maf:114:p cb`^aghlmid_abdigf`ZYY`cee_ab`djiiibed`b`]\__cb`ca[[cihhilmlhgaddbhhghjjmmmkebhjfdd_a`ZWWYadadffbZWWVUUXbilmkg`abafdbhhbehihchge_VTRRPJHHHHHGHHHHHHHHIKMNU[\dgghlkeb\YYY`cjljjhfacd`a`[[YXXZZ]_^`_\]]]`hje\YY`bhiijebhgffb`bdbiljjkh`a`gijljjjjiif__^[[]^bcahhac`]__]`cahlmkkmmkkmmmmmlhgbehb`bd_a_bgcikjjlihdadd`]__cbafdaejhe^][[WUUVVVX^__]XVOMMLKIHHHHHGGGHHHHIIKRUUXXY[^^]`b`eglmmljchhadc`cjlib_]^_fhciichebfghgc`chilkkmmmkd`bejid_aa_bimmmkkljihcggbegcggcihcfechklljkmmmihilihdb_baehlkfbiklkhchjkh`\\\[\\[^d`cekmlia_\]`eggaa`^a_][\\`hllihhkhfb^^a_ab`edaddaejkg__bfchjlihilke]XWXZZ[\[^a_bebeb\[\Z[[[^bafgjjmmlibehhgd``[Z`d`cb`cijjhbeiikebgeaggcghcikge_`fgbe`^\]]`cahkjjjjjjjjljiihge__]XXZ`ggadedcdegfadebillkhbba`gjhhc`cjjdb`c_ZZZ_deaehiic^__`achdcahlmjjjdb_bdkmmmjc`a`^cfadf`bbahljigaa\\]]\][YYXXZ]]ejligcZWUUW^ca_`_]achillhf``ZWWWWXYZ]^\]]Z[[[aglmkkmlihilkg_`^\]__ffaccahid\\\cfcilmmmligcgdaejiieafdbilmmmmlibfkmlibdc`cijg`^[ZZ\\\_ghghihdadgc`_bijjkeadgcgc`cghic`bca_djlh`abafc`ce____edb`giihbehijc`cjljebiljda_b^[[[WWXZ`cfcgikhggebhicffcilmliceeadfaejha^[[[Z[]]`b`ghcffcghjiichiljc`cgcihbeiiljjigciljihabdggdad_a_`_bc[XXVV\\_dadhilkeb`dfghlmkecahklia^_`cjmmmmkdb`ddaba`gjjljjjebgebilmmmmkfbikhffhlmmljchhbddaekliaYYYY\aaeebilmljjkeaekjjmmmmkecahljk~~ljg`\\^ailljgb^\~~]^\[ZWVVVYZ_efgb`YWPMFDBBBBEEFNTTSRSS~UVWYZY[[[`egi~ia^XUUUS~~~P~~~PNMMMLLLLMNNNNOPQRSTVXYZYXXZZZ]_YWUTTTSSU\aba^YXWVV[]_fieb`dkmkf^^^]``_]^YXWRQQRY``[[cgdbaa`]\ZZYYZ\\_dbgebilligcgilmlihiie^\ZYZY[\a^\[ZWWYY\]]_ahic`cifeeeca_bdihfbekmlibehih`YWVTTW`fgkihilibekmlihijjic]^][\\XWWW\\\`hljkmmmlib^]_^ca_^YPMFD=:87776666679>??AABBBBBDDEEEEEEEEFHNPVZZWXZ]]bghab`dga^_^afadebhklkebge]YZaeedddfiifd^URKB?8/,,+)"$$#%&~~~/8?AGHJQU\^cea_^[]]^^]^dglmlihilmlf^[TQJA8532-+~~~)(''&#&&%-12~~~~~323321/*(%(*******+024;=ABDFIJKLNNPPPPY`d_ZXUSRRRRVWZ]cfjjmlib_]__dc\XX]^^]`hkjigcgiiiibeklkgd_^\]`hlmmmmjjibehihfbeiebffbejg_XXY[___fiiljd_a_[[YYYXXUUW\`be`bce``_]`db[XRPNMLLLMNKIIIJKMQRTUW]]\]cegbZZ]ega[[[[bb`gijmmmmkkmmmkhacd_`a`cjmlihilmmmlg^XVUVVYY[[[\_gjhchgaa`ZXYaggbfkmliacb^`a`ce`bdhilmlibehiljcZPMLKJIHHHGGGGGHHKSYZ\\^a^^billljjmlibddbhki
last-align-1145/examples/multiMito.maf-115-p ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{zxutttuuuvwwyzzzyyyz{~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{{yyy{{~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}|{zxwwwvvvuusponkjjjhhhgggggghhiiiiikkkllmqtuvy{|~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}||}~~~~~~~~~~~~|{|{|||~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}}~~}}|{zyyy{|~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|{|{{}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~||zxwwwyz~~~~~~~~~}ytssssuvvwwwvvww~wwx{|}~~~~~~~~~~{vrqol~~~h~~~geeeeddddeeeeeeeeffffffffffgggijjlllmmmmnqtuuuuuvvvy{|~~~~~~~~~~~~~~~~~~}|{zxwwx{|}}}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}}~}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~zvqlkjfbbaaaaaaabbccccccccccdddddddeeefijkmnoopstux{||}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{vrmhgeb^]\[ZZZ]_`~~~dhklmmnsx}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|yup~~~kgb]\ZZZ\]^^~~~~~^^^^^^^]\ZZZZZZZZZZZZZZZZZ[[[[[[[[[[\\_abbcccccdddfglquz~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|yxwvvvvvvw{}~~~~~}{zyvutqmiddbaaaaaaaaaaaaaccefghiijnprsstx|~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|{{||~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
last-align-1145/examples/multiMito.maf:116:p SRNNOOQTTPNMLKJJKKKKQRVWYZaehjjljjiceeaejhfbYXWUU]`^_^``^ca_acggebhhghjjmmmlibejgffdadaded_a^_^][\XXWVVYbhd\SSSSSTTTSRRQQRRTV]ZXQNMLKF>;:99999999::::;;ABELPPPQRSRQQPPRTXYY[adhifc`\]][\[XYYY]`^a\VTSQQRTW_a_`_ca_billged`]^^ailkkmmkebhiig``deb`cjlhffbZZY[cjmmmkklihebhg`bcc`b`ghcihceeaekjjmmkebhgab]Z[YXYWSSSSTTUXXXWTPOOLJE<:94+++*****))&$$$$$$#####$$$$$%%%%%%%%&&&'*./1233336?IQVW[``gkjkmmkdb`dadgciicgc_`~~~~~~~~~~~~~~~~`ab`ZXX[\[^`^_fijlkjmmlib_`_cb_b`]^^]_\\`fhjd`a_chijhgchjhd\\bdjhbdfcgjjg_XVUTTTUW`deglmjd[XUTTRRRRUUUVVTTUXZ_gjeadgbejge``ghijebfhiiib^^bhgcfc_`_^`fd\YXWW_ec_a]]_`_cfadfab_`_gjjjhfbYYWPNLKJHHHHKSYZZ[`_\WTTVY`ciebgeaggcggchg`ZXY_gklihillic`a_dda^`bghljiihgc_abb`cjllhfa^]\[]_dedailmmmjca_bijjlhgb[\\\dhijebilkg`\]ZZZ[[^`ggfa[\dhijdb_bdkmmmlhgb_[[[bdkljc`cjjjmmkecbb^_][[[Z[adgbYYXVVVVY__giifedefijlkdb[[cbZWVVWW]eecc^_`abdahijjd\\\[aeaeigfebggd^]ZZ[ZZ\]_a_edahkmjjje]VVVVX[[bcagdaekmmmjihcfcZZ]\``dd^[XVWZ^cfhb_^]__][Z[__^`a`gkkg`XUUWY^^ejhga]]__bc[[[YY_ehica`^_\XWW[^fkljjh`ZYYahjhbXOLJJJIHHHHHJLSV\\\[\\Z[]]ejhbegcjlmmmkklia^__]^]\]]]ehchebhkjecafgjjmmkkmkebfgchgaccagiihgcihaYWUUUUVZZ\]YY\\`e`]]]\][[[VVUUTVUUU\^^]ahjdb`daYPPOPPPRXY\dhdb`ddaba`gijkebgebhijmmmmmmkebgf_``_gkkic^^`^^`_djlkg``_]_a`b`]]__beijgbeeaekmmmkecahkih~~ciljeb`dkmkhc[WV~~VZZ]_]YXXZY[[WUOLEA9211100000//////-,!!"#$&&((/1566~6655320,"$$"~~~$$$%%%%%%%%%%%%%%%%%%%&&&&')+2566788888:CJMNONNOPQRRQQQQXZ\^glljcZZY[[YVTNNNNMMNPVZZZ]`\ZYXWRRRSUUWXZ`hlkebillhfaba`gica^ZZ]\YXXXZ[bdddb[[cdcc`bdjic_bc]\]`fhkigc`cjmmmjc]]WRQQRVZYWXX]`fdbahhbekmlhggebhhggg`a`^ZZZ^^_aa`eglmmlh_\ZZVUSRQPQQSQQRQPOOPQRRUUUTTUXYXUUVUUSQOKKKIHHHJKNUXWXYZ_``^XXXWWYYZ^ehd\[\`efbfb_a\SPPPVXWWXY]``fgfc]TQJA>=74~~~.+)#&&#()+--.7>AABJMNNNPPPVWTTV^`_defkkf^VSQNLKIC@=8/"#$"#%()~~~*+-.~~~~~../012458~?BCCCCCCCCCBBBA;:5421110000001:CJLLMNMMMMNKJJJKNR\dggebgd[[`^`^_dadg`aimmmkkmmjgaa[YY^`bjmmmmmmkklhc[UUWY\ehilmmmlha[[_[\[ZVMGEDCCBBCDDDFFFGIIJJKLLLNNOOPQQPQQQQPPPPQPPQPPQSX]cdbghfaXSRRSXafklkg_`^\YY]]ccailmligd]URPPPQSUX_ailkec`deea[RI?>=9777777789;>??ADLQROOQY^a`fdbikkhcghjjlihhiheaffaehimmlia^]YY^]`ca_a^`bcddb^[XWQI@?<;:5321000000111
last-align-1145/examples/multiMito.maf:117:p iiiiiiiiiiihhhhhhhhhijkkmnsx|~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}yupkjihgea`_^][WWUUSQQQPOMIEDDDCCCCCCCCCCCCCCCCBBBAAA@@@@@@???????@@@@CDEGGHHHJKKKKKLMMOOPQUZ_cgikknoprstvvwxxxxxxxwvvvwz|}}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}|yuusrqonmkjifeda]YTPKFEC@@>;;9664211111111000/.....--,,,,+++++++*****************************+./036779:?CGJLLOQRW\`ejnqsttvvyzz}~~~~~~~~~~~~~~~~~~~~~~~~~~~}}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{wrqqppppqqqrrrrrtuy}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|wsrpmllkkkkkkklmmmmnnnnnnotx|~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|{zyyyy{{~~~~~~~~~~~~~~}||{|}}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|{{|}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yxxyyxxyyz~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}}~}~~}}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}|}||~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|yu~~pomjfb]\ZWSOJEA@~~?????>=<<<<<<<;962-)$##############################~############~~~#######################################$(+-.///114566778<AEILMMNNNNNNNNNNNNNNNNNOSVXY]`bccccccddffiklquy|~~~~~~~~~~~~~~~}yxxwuuuvwx}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}yyyz}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|wsnihffeb_^^^^^^^^^]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]^^^^^^_______________________________^]]]]]]]\\]]\\\\\[ZZYVSOJJ~~~HEA<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<;;:9888752.)$$$$$$$$~~~$$$$~~~~~$$$$$$$$$~$$$$$$$$$$$$$$$$$$$$$$$$$$$$%%&'''''''''''''''()-13555666666677788:;;<AEJOTX\`bcceffglpuz~~~~~~~~~~~~~~~~~~~~~yupkgb]\\[[ZYVSNNMMMMMMMMMMMMMMMMMMMMNNNNNNNNNNNNNNNNOOOOOOOOPTX[\]_abbbbbbchmquy{}}~~~~~~~~~~~~~~~~~{vvtsssty~~~~~~~~~~}zuqlhcbbaaaaaaaaabfikkorsttttux{}}~~~~~~~~~~~~~~~~~~~~~~~~~~~yupkfb]\\[[ZYVVTTSQNIE@;7641-,***)))((''''''''
last-align-1145/examples/multiMito.maf:118:p $$$%%%%%%%%%%%%%%%%%%&&&&''((()*+.016:?DHKMNNPPPQTVV[_``^a_\\\\_efhd`cdagd`ca^^cdcb__eijdb`c`ba]\]XYXXX[dhbYONNNNOQZ`ggaccaggbcb]\^]`^VTSSTSRPPOOOPPPRZ_acc\SPPONHFFFFFFMPWY_bffb]VRQPONLLLNORVW[aa`_^efaeiebghljjmmmlhffb__fkmlhfbZZ]ekjjibded__bijd_a`YYY[ab`ghbekjjjjmmmihd`baghcjmmjjjjljie_^``fdafc`cifd_[[YXXVVXWVUUSSSPNHE><52222222222000000000000111679<===========>>>?ABFGJKLT\bb_ZZ\\`hlkecahlkebikjf^\]afhkjjjjlkkljcigffgf``ehiiic__fijlkjlmlibdfacb_a`]^^^[[[_ehjeaeefhbegfchhgbZXXY^`^cfcgjkjcZWUTTUUW`deglmmlhffhljjlkdb_ba^^ccacahgeda^`b^^`_edbhijjjjjmmmkjkeaejjca_biic`]]_\YSJIHHHHHHHHHHHHHIQVVWVUUTQIG@?????@ADKPRSXYY[[YVUV[beiebgdaddacc_\\ZYZ`fkljca_billkebghijjjjjljijigc_abb~~~~~~~~~~~~~~~~~~~~~~~~~~cfkihc`cjlihiljkljjkebiijib]]]\_bgfd^XXZ^_^`_]acjlmmjc`a`^djjjkga`_bijjmmkdb``^c_\\[[\ab`dihgcZWUUW^dc`baaab`djlkklia^^XXXWVWZ`acfa_]\^_fhhe\YYZYahijlihillkhbbafe__cikibekmmmmjjiaXUUVVX^^cgilmmmmmmmjihcgc[Z]]`fgf_\YXXY[\_ca_^]_`_]]bca_adc_^[[YSQRRTWX`ffe`ZXYYac_abb`dijg`abdga^^afgiciiih`ZYYahjlmlg_XWYWUUWW\]_egkg`]^][\^]egbdb^]_^cjlkkmmlihc__^\]]]ehchebgdaghljjjjmlhgbeiimmmmmmkebgdaeecikhfa]^^ZXXUUWUUVVVVPPQQQUVY]\]^][][Z[```^bijec`edaggf`bdihbeklihijjlkkmmjjkebhijljkmmmmmmkfbhg`abdkmmmmlic`bc`djg_`_XUSSUW]_]]cggc`cjllibekjd[SIF?<5,+!"!""#$$%)0222210,#)$-5:DLQQRUW[dghhhca[SQJGFD@7.--*)('''~'&&%%%%$$$####,1234443~~~/"#%"#%))*+-/56899999::;;<<<===>@BIMNOOOOOOPPPQRRRRRRRRTSTX`eefgkg^VLKKHHHHHHFEDCCCDDFFFFFHKLMMNONNNPQUWY^bafdaeebfilkkmlh`][ZZ\]YXXXZ[cdddb[[_^]\[]`fd[WW]\[[\cejjjljjmljchg`a_]WWX[\YWWVUUUXXY_^XX\ejhggebhgeda^__\[]\^__ab]]\WWTQJA?====<<<;;;;;;<<<<<<==>>>>>>>>>>>>>>=============>>>>>>>>>>>>???????@@@@AJT\cgcgebilmkh`a_^[\^_^ZXYY`a`hlmmkkl~~~ihe~~~affc\WW\djhfgdb`fedcc`WWX[djihijebge^URPOMGDDA:~~~60/-,~~~'%$$'&%$$'))*,1246~=FMPVXZ]YQHCA@???==<<<<<<<;;;<<<<<<<==>>ABCENSTTTUVZ[XVVUTTYZ\\ad``[SPPQY^``\YY`daYVVXX[\XX\dig`bb`c`^\]]`hiikhbdf`a_bc\\[XQNKJIHEEECCA@????AAAA@=5332222222222211111111111246:;<======>>@AHJT]d`WVWWVWZZab`hlmmjif^VVUUVWW]__bjlia]]`cahklhb\ZWVTSTTTSSTUUUUWX\\XVV_daZZabahkjd`bdhilihhiihbdgbehilljf`\XTONMLLLLLLKKIEA=<::863..,++++*******))('
last-align-1145/examples/multiMito.maf-119-p """##################$$$$%%&&&'(),./48=BFIKLLNNNORTUY]`abefgjlmqvz|}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|ytpooonnnoooonnnmlkiiheeedddcbbbbbbbbbbbcccdimrvz}~~~~~~~~~~~~~~~~~~~~~~~~~~|{zzz{|~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|wsnid`[ZZYYXWWVTSROLHCB@@@?????>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>???????@@ACDDFFIKLPTVWWWXZ[_dimprrw{}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~zyyxvtpommmlllllllllllllllkiiheba`_______`dfghjkkmmnnnosx{~~~~~~~~~~~~~~}}}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}|}||~~~~~~~~~~~~~~~~~~~~~~~~~~~~}yxxxz{~~~~~~~~~~~~~~~~~|xwvutrqqqrttx|~~~}}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}zvusssrrssssrrssstuwxxyzzyyyyy}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|{zvrnie`[ZXUTSSSSSSUUUVVVVVVVVVVVW[^`abbbbbbcccccccb`]\ZZYYXVSRQNJIIII~IIIHHHGFFFEEEDDDDDDDDD~~~DDDDDDDDDEEILNORTUVVVVVVVVVVVVVVVWWWXXXXXXXXXYZZZZZZZ[[[[\^```aaa```^^][[[[[ZZZZZZZZZZZZ[[\`cefffffghikmmprruwwz|}~~~~~~~~~~}yxxwuuuvwx}~~~~~~~~~~~~~~~~~~~~}|}~~~~~~~~~~~~~~~~~~}|}~~~}}||~~~~~~~~~~~~~~~~~~~~~|wvuqqqpponlhdca^^\YVQPPPPPPPPPPPPPPPPPPPPPQQQQQQQQQQQQQQQQQQQQQQQQQQQQRRRSSSSTUUUUUUUUUVVXX[]^cgknopsuvz~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{wrmihhgggeb_ZVQPNKGBBAA?<<:7~~~4/.-,~~~++****************~**********************************************************+++++,,,,,,,,-.///////0000000000000000000000000000000///////...-,))'''''&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&''''''''''())++.001112223458:;@DIMQSTUUUVVY[[^`aehjkkklmnnooooonmmlllllllllllllmmmmmnnqrsssvxy~~~~~~~~~~~~~~~~~~~{{yvrnie`[VRMLJJIIIIIHGEB>:97653/+*(((''''&&&&&&&%#
##############################################
last-align-1145/examples/multiMito.maf-125-s fuguMito 10486 1427 + 16447 CTTAGCCACTGACCCACTATCAACCCCCCTTTTAATCCTCTCATGCTGACTCCTTCCTCTAATAATCCTAGCCAGCCAAAACCACACATCTCATGAACCAATTAACCGTCAACGAATGTATATCACACTTCTTGCCTCCCTGCAATTCTTCCTGATCCTTGCCTTCTCCGCCACAGAAATGATCATGTTTTACGTAATATTTGAAGCCACTCTAATCCCCACCCTGATCCTCATTACTCGCTGAGGAAACCAAGCAGAACGTCTTAACGCAGGTACATACTTCCTTTTCTATACCCTAGCAGGCTCTCTACCCCTCCTCATCGCACTACTACTCTTACAAAACTCTAATGGGTCCCTATCCCTCCTTATGCTCCCCCACTTGGGCCAACTTGAACTAACATCATATGCAGATAAGATCTGGTGGGCAGGGTGTATCCTGGCATTCCTAGTTAAAATACCCCTTTACGGAGTTCACCTTTGACTACCCAAAGCTCACGTAGAAGCCCCCATTGCAGGATCTATAGTGCTAGCCGCTGTACTACTAAAACTAGGGGGCTACGGCATAATACGAATTTTAGTCACCCTAGACCCCTTAACCAAAGAACTCAGCTACCCATTCATTGTCTTAGCCCTCTGAGGAGTGATTATAACTGGTTCCATCTGCATACGTCAAACAGACCTAAAATCATTAATTGCCTACTCATCAGTCAGCCACATAGGACTGGTAGTTGGAGGTATTCTCATCCAAACCCCCTGAGGATTCACCGGCGCGCTAATCCTCATAATTGCCCACGGATTAACATCATCCGCCTTATTCTGTCTAGCTAATACTAGCTACGAGCGCACACACAGCCGAACTATACTACTTGCTCGAGGTATGCAAATAATCCTCCCTCTCATAGCAGCCTGATGATTCATCGCAAGCCTCGCCAATTTAGCATTACCACCCCTCCCCAACTTAATAGGAGAACTAATGATTATTACCTCCCTATTCAATTGATCCCCGTGAACAATTGGCCTTACTGGACTAGGTACACTTATTACTGCCGGCTACTCGCTCTATATATTCCTCATAACCCAACGAGGGCCCGCCCCCAGCCACCTCCTAGCTCTTGAACCCTCACACACCCGAGAGCACCTTCTTAtcgccctccacctcctcccactaATCCTAATTATTACAAAACCAGAACTAATCTGAGGGTGAACTGCCTGTAGACATAGTTTAATCAAAACATTAGATTGTGATTCTAAAAACAGAGGTTAAAACCCTCTTGTCCACCGAA--------AGAGGTTCGCAACAATGAAGACTGCTAATCTTCATCCCCCTCGGTTAAACTCCGGGGCTCATTCGACCCAGCTTTTGAAGGATAATAGCTAATCCGTTGGTCTTAGGAACCAAAAACTCTTGGTGCAACTCCAAGTAAAAG
last-align-1145/examples/multiMito.maf:126:p QSTTW[aedahkgedefid__]^\ZYYXXYYYZYZ[Z[_eec\\beklhab`dfaa`_bd]^\\[\\_daegbejhf`^[\^]ZVONHFDCBAAA@>======>?FHILLQRTUXafhijebhiihbejlmmjjhd]\]]`aZPNLFDCCDDGNPWYbhgfa^^][\beic`cgcijjmmjiebhkkgffgkkic^``_`_]^XVTSRRRNNNNPTUTTSTSNNNOPSZ`a`dcaghgilmmmkeb`effe`]\^_gijmmjjhacekmmkdb_a^]`c`bdhilkdb`cfbggghjeaeadc_`_]]bdca_dgchhbddafc`b`XXVOONNOOORRRRRQPPQSXaed^]_^bigeea[YWW\[VTRQPOOPPPQRRQMKIHGCA@@@@@@@@@@@@BDENW\\^^dfkjjljiebhkib]]_^ae`baggcgilke\RRQQONLLMLMMNW`da^XWXX^aafgg``^aeb`cjmmmlg``a^`adjihilmkebijjha]]]\_cahllihilmjjic`a_edafc`a\SSSSSRQQTZ[\]^cifc^]`_dgbeeaejihebhje`c`YWUUXX`efhc[[_``_^cgbejfeddbebgikkfbikgffffb_\\Z[]]cdbghhilmmmlhgbekjjjjlljjibfkljc`cjmmjc`cjkibegghlllg_^bedegkichgaccagebillic`cheabahljjmmmmmjd^_][\WUTVVX_`ZXWWVUU[\_fhigeeb^__^gkjkmmkjkf`_ddbgf_XUUWZZbeaejjjmljd`cebeeaeklmmlkebhigabaejljkmmmkkmmmmihilib_acjmmmmjjic^^XX\ejkibde__YYbhijjd`b]]^]`_dhilmjjg`][TRSSRSW[_ahic`cikh_[ZZ[_glmmmjc__fkmmjjibdfcillhfadeaa[WW\b`^]\[Z[]\``_cdadhdad`bdhd\YROIFEDDDDDDDEMPPPPOPQTUUVWW]eklia_]WVXXZYWWXWXZZ`cggchhgb_`_ccaYPNMMMMPPZbea\\]acegjhb^_dbgjlkha^_`b^^a_]^_^bee`a^acd_^bgg`a`_]`efe_^YVVVX]_`_a]]_aefgkhe^^bddeffec\YSRSTTUW]]`^VVWXX[Zac_YWPMMMMMMMQRRSSTUUX\[VUSRRSSRQQQPPPPPVWZ_``ZWVUTSSRRRQPPQW_c`bdjlllg_\[UQQRSTVYbgebikibeklmkkmmjcZRIE?6-#$$%&'(()+0136=@HNPR[`a`di~~~~~~~~hghg``~~~~~~~]^dgiljkmmmmlhg~~bekmmib]]`bjlke`cca_adif^URKB?=7/"~~~~~"%.2357=?AIKU]bcbfbZZ~]eiiljjjjmmjjkfd^]^`a````~]]_aghlmkecahiihhikhffhl
last-align-1145/examples/multiMito.maf-127-p dgijnswz|}~~~~~~~~~~~~~~~}|zyyyyzz|||}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|{zxtpkffeec`\\ZWVVVVVVVUUUUUUUVVYZZ\]bgkpuz~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|yyyxxy}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}{zyvvtttssttttssqqpqqqqqpppooonmjfba___^]]\\\\\\[[[[[[[ZZZZZZZYYYYYYYYZZZ]_`cfggijotx}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{{{z{|}|}}~~}}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~zzyzz{~~~~~~~~~~~~~{zz{~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|yxvvusokfba__]]]]]]]]]]]]]]]]^abcfhinrvy{{{{yyyyyyxxxxxz{~~~~~~~~~~~~~~~~~|||{{}}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|{{|}|||{{zxwwxxyyz{{zzywwwxxwxyyyyyyyxxxwtsrrqrrqqqqqqqqrsstuuutrrqonnnnnnnnosvxx}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}xsoje`\WWWWWWXXXXZ[`dinruvw{~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|wrmhd~~~~~einsw{~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|
last-align-1145/examples/multiMito.maf:128:p @AAABCDDDFKPRSSSTUUV]dfc^_`acga_aa`gie^USRQQRVZZYYZZ]a^_`adjkicfgebhhbegbekjjhfbegeaYTSPJIHHIJRWWTSQPOOOPV[b_]\ZWWWW\\]\_^ccb`\[VUUX\\][WVWXYXXWVTSSUVWWXY[\[\_a_a`eghchkjc`cgcijjkf`a`YYafcb_cfbggd\YY`ciha^\]\^`]__^`d_]\YXRPNNLKJJKPQW^dfd`dgcillhf`bdghebghlmjjkhacb_b`hklmjjgd^^abZWWWZcjjjlkhchgffbZWVUUXagdadhhgffhlljd\\a`ZXVVZZ[]]ac_XWYYXUOHGGGFFFGKLMNQQVXVUVUTSPNMLLMLMTVRPPPPPPMKJIIIIIILNT\_\][[\`giiicZRQOMLLKKKKKJIIIIPRXahje^WWXWX_bilia^_`cjljcZQPPOORXZ[Z_a_djlkkmlibegc`cjmmmlhacejihilihilmljdiijia]]]]`hllibba`fc`ciidjlkeafdaed__ehfaYY\`abdkmmkjlihcilligchhbeklkf``giid`dfb]][[]ZY[YYYYXYUUUTSSRRTYY[\ZZ`hkgffgiifd_ZXXY\cebffhlllhe_YTTSTTUUX[acfbeklkebilmmjc`cjkibegghlmmmkklhffgjeaekmmkjkfbillkg`a`]^b`djjgebdc^^]_ab_`_ZY\[\``c`^`^a`daejjigeea_^\]dc\XWW^`b_`_ddbhjead_a`_bilmmkjkicefgicgillhacb`a_\\XVTUTV^dgilmmkkmmmlihhhchhhilmmmmkjkeaeebfijkibekibYVVWWZbfec^^`_a_cdc]^\Z[[ZYZZ]a_be`bdf`b`dhfaa\\]]ahllje\\\ejke\YYY\[]\\_^cdcadac`^\^]^]\\[[^a_b__dghfc[[_]__fjjjhd^^`\\]\]cfd[XWVUSSTZ\_]]ahkhb[USSSSSTUURQQMKIDDDDDCBA@<<<<<<<@BGMOOQWY]^\]WTPPQW^a`cegklmmljd\SPNNOUX_ceb_aa]TRPPNHFFFFE@@@@?@@@@@?:6422222222222236<=@@@HKLMPUVVSRPPOOOPUX[`_[ZZ\\a^``\TRLLLMOPS[][[WNKKKLKJJJLOVYXVRPNMMH@@?==;:998877666555556?EHMNOR[djlhghgf`^\]_aijebilmkjlljc`che]\Z[[ZYURRSTUUTQPQRRUY[YRROHFD?63,$,22321,#,2344~~~~~~~449<=@JS\ekllhf~~acc`b\TNLLJIIIGFGFFEFFFFFFGGGHJMSU~~~~~\_gfeeghghjjmligcikib~ejigcghjjmmjjkfd]\]^^[Z[^~`^achilkic`]^]ZVQMLJGC>:
last-align-1145/examples/multiMito.maf-129-p %%%%%%%%%%'''((((()*.2578=AFIKLMOOPQQQQQQQQRRTUUVVXX[]^chlquxyz~~~~~~~~~~~~~~~~~~~~~zutroonnnorstttssssstx}~~~~~~}~}~~~~~~~~~~~}|{|~~~~~{{{{{z{zywwwwwxxyyz{z{}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}}{xtsqqqqqsty}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|wrqqqoommmmmmmmmmllllkjgdccbbbbbbbbbbbbbbbcccccccccccdfggghijjjjjjjjjjjjklmnnnnnnosvxyyyxvuttsrrqrrrrqqqrtty|~~~~}}}}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|xxvvvuuvvvvvuuttutuutttuvwxxy~~~~~~~~~~~~{zz{~~~~~~~~~~~~~ytssstuv{~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}zzzyyz{|}}}}~~~~~~~~~~~~~~~~~~~~}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}~}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}}}}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~zzzyyyyywurmihhgggggggffedddcccccbbbbaa`]ZVUUUTTTTTTTTTTTTTTTTTTTTTTTTTTUVVXYYYZ[\^__`aaabbfjklqv{~~~~~~~~}|{z{|}~~~~~~~}zywwvtponmljiiiiiiiihgeba`___^^^^^^^__cfghhimpqrvxyyyxwvuuuvxyzzywwwxxxyzzzyyxxy|}~~|zvvtqpppppppqrrsrrqnnmjiheeeddcbbbbbaa```````aadfgknpqvz~~~~~~~~~~~~~~~~~~~~~~~~zuqpnkgfddc``^\[[[ZZYWVVVVVUUTRQPMMMLKIEAAAAAAAAADFFFG~~~~~~~GHLQVZ^`abbbbbb~~bbaa``^\[[[ZZZZZZZZZZZZZZZZZZ[[^`a~~~~~fkoty~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{{{|~||||{yvqmhc_^\YUPKKIFA=8
##############################################
last-align-1145/examples/multiMito.maf-137-s fuguMito 12107 1338 + 16447 GAATCTATCATCACTAACTTAAACTGAATAAACACCCTCACCTTTGACATCAACATCAGCCTTAAATTCGACTCCTACTCAATTATCTTTACCCCAGTAGCACTATACGTAACCTGATCCATTTTAGAATTTGCATCCTGATACATACACTCAGACCCATTCATAAACCGATTCTTTAAATACCTTCTGGTCTTCCTAATTGCAATAATTATTCTTGTTACCGCCAATAACATATTTCAACTCTTCATCGGCTGAGAGGGGGTTGGTATCATATCATTCCTTCTTATCGGCTGATGATACGCACGAGCAGACGCTAATACAGCCGCCCTACAAGCAGTCATCTATAATCGAGTCGGAGACATTGGATTAATTATCGCTATAGCTTGAATAGCCACCCACCTAAACTCCTGAGAACTACAACAAATTTTCTTTTCCACTAAAAACATAGACATAACCCTCCCATTAGTTGCCCTGATCTTAGCCGCAACAGGCAAATCAGCCCAATTCGGCCTTCATCCGTGACTTCCTTCTGCAATAGAAGGTCCTACACCGGTCTCTGCCCTACTCCACTCCAGCACTATAGTTGTTGCAGGAATCTTCTTAATAATCCGCATCTCCCCCCTCTTAGAAACCAACCCAACAGCCCTCACACTCTGCCTATGCCTAGGAGCCCTAACCACCCTATTTACCGCCACCTGCGCCCTAACCCAGAACGATATCaaaaaaaTTGTAGCTTTTTCAACTTCCAGTCAACTAGGCCTAATGATAGTCACCATTGGCCTAAATCAGCCCCAACTTGCCTTCCTGCACATCTGCACCCACGCTTTTTTCAAAGCCATATTATTCTTATGCTCTGGGTCTATTATTCACAGCTTAAATGATGAACAAGACATCCGCAAAATGGGAGGGATACACCACTTGACCCCTGTTACCTCTTCATGCCTAACAATTGGCAGCTTAGCCCTGACCGGAACCCCCTTCCTAGCCGGCTTCTTTTCCAAAGATGCCATCATCGAATCTTTAACCACCTCCCAATTAAACGCCTGAGCCCTATGCCTCACCCTCCTAGCAACTTCTTTCACAGCTATCTACAGCCTACGAGTCGTATTCTACGTATCCATAGGCCACCCTCGCTTTAATTCCCTTTCACCAATCAATGAAAATAACCCATCTGTAATTAACCCTATCAAACGACTGGCATGAGGCAGCATTATTGCTGGCCTATTAATCACCACAAACCTTCTCCCAACAAAAACACCTGTAATATCAATACCTATAGTTGTTAAACTTACTGCTCTTATCGTCACAATCTTGGGACTCCTAATTGCCCTAGAATTA
last-align-1145/examples/multiMito.maf:138:p Y[[XY^`^\][WWXVWWYbdbhklmlkf]][YUURQQQQRY\[XVVWVWWTTTVX`dhlkec\SQONNNW`da]]_bghdadb\ZZYXWSSRRSV^egibYVUUUWWX`cahklkebfb`bdbhjhcghifda[VTTV^dijjjjieaejmmmmlihhhgilkebfhibYY_`a[[[`acgd[RHEEEEEIJMPWY^^aghljjlhaa[XXWQONMMMMMRSY[\ceihhebhic`_bghjd`bekkebghlmlje\YYYY`d`bdhijjlllib^`aa^``ggaca]]__cghhdbhkia^^afdbiklicf`^_``fgcjlmkdb_b`gijlkfbiifdaccadhiiidjlligchhchklhfacejib]\^^`\YY`ef__big_][WWY\cb^`_XXY^`hlmmmmlh`\][\`^]WNEDA?>>===<<<=>>>>>>>>>>>>??@CIKOPQS~~~V\^[YYagijhfc]\]\]`_fiihd\\dige`abdkmmkeadggdb`ddaejjjjdba`hlmkg_``_gkljc`cjlmjjihdba_cb_adjkeaejmkeaekmlibejlmmjjicgfaeikjebgdbhlljjihd_acb`cjkg``giiicghiig_][ZYTLKKHHHHHHHGFEDDDDDEEEEEFFFFEEEEGIQX[[aea^`_b_\][YYZZ`bcc`ZY\\]\[]ciibYY[[`cadb`bc`dc`cddddbilmmmkecbbbcejhabahjjjjjieaffaekjjibeijmmlhgbehcjljjmmkebgd_^b`ddadf`bdhijjjjllljkmmmmmjjjjicikllmmmmmmihillkebghljjlihikebiklkhcefgihchkkic_``_db_cjljc`bc[YWWVQOMLLLRT]cfkjjlicfc`cifddded\TQJB@???????@ACDGPYbgda[[`ehfaehc_`_c_`a^UUUVXZZ_`_bijihab[XWXWW`fijjjmlhf`bdhhhbejib_]_bilmlia^_`cjjda[[_a`fdad_[UUSRRRSTSSSRSPPQY^__]`cjljkmmmlgfebZPPPSZ]egcggbeklkeac][[ZXXXUUSMKJKLMOW[[ahic[[ac^[XSQKHA@@@@@?????AAAAAAADMSVZZ\]XWVTTTTSTTTSQQNMNPV^dfijmlgeefe]]XVTRQRTVXVV^bbb`^]\]_^cdfkljjibeig__cghjjje`b_a`_gkmjicZWPMLF=4***))))))))((&&&&%$###""""""""""""##%+,/699::::;<==>?BJNNOPQYadgkhfe_VSRQPPOOOOOOPPYbfgbZZY\dca[[bc`dkljc`cf`
last-align-1145/examples/multiMito.maf-139-p hiiijmnoopppprrtuy{}~~~~~~~zvusplkiiiiiiiiihhhhhhhhhhhinsx|~~~~~~~~~~~~~~~~~~~~~~~~}|}|}|{{zz{~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{zz{~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ytssstuv{~~~~~~~~~~~~~~~~|{zwsrqpppqrsvxy}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|wrnihfffedb_ZZXUTTTTTTTTTTTTTTTTTTTTTTTUVWWWXY]~~~adeffgkpsuvvvuuvvvxy}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|xsnie`__^^^^^^^]]]]]]]]]]]]]]]^^^^^^`aegijmoopqqsttuuuvxx|~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~||zzywssrrsuvz~~~~~~~~~~~~~~~~~~~~{vqmllklkllmquxz{~~~~~~~~~~~~~~~~~~~~~~~|yxxy|}~~~~~~~~~~~~~}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}}}{{zxwvtponmmmmmmmmmmmnnswz|}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}}{xwusrrqqqpmmmmmmopprrrrrrrrqpnkjifbaaaaaaaaaaaaaaaaabgjmoorttwyy}~~~~~~~zzxxxy}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}{wsnje`[ZYUQMLLKKKKKJJJIHFEDDCA@@@@@@?????????@@@ABBBBBBBBBBBCCCDHLOPQQRVZ\]^^^^^^^^^^^^^^^__``eimopprswyz{{{~~~~~~~~~~~~
last-align-1145/examples/multiMito.maf:140:p SRRQQT\_^\[]\\[[_dedb\[YXTLC@?>=<<<;;;;;;;<=?BKQSWWVVVVWVUVVVXXZ[\\dijc[RRRWY`dhilmkjlljihac`^][[^]eig`a_``_eb`bdagebijjmlibejjebfgf``ZWWYafhheacb[WUV]_^b`]_`_\[\aa`[VUVXY`cgca^_]^efbekmmljf^]`bghhadb^_dgkjg_`][TRSTUTUW[[^ff`aaadedahkiifd_^bd`_^\]a`eecilkha^_`ahlmjjihebggcgd`ba\YYZbhjhb]]__chijie^^\\[\_gkljchebijjjjlllllh``YVVXY^_]`gdab^]`_cfjjjjjibekligcggcfdacc_^billge`WUUVWZcjh`WMD:866555555555579;BEKMV_dd^ZYYZ`dhjgeeaXXYXVONNMMLIB9776555544321.'$$$"~~~##"*+,.1:CLSWWXZ\]`hic`a\YYaffe`abdiebgd`dggdb`ddacb`chdba`hllh`\\\\]ejic`cjlmjjhgb_^]_bbbcbillkebhhhilmmmjjhbdc`cjlkibejkjebfdbhicghhfa]]]\_bilmmlkeb\SOMLKKFD?64333333333333333344445566666666678:<DLPX`efd]SJGGEDCCCCCCCCCCCCEGGMOQY\\YXX`gjid`ccaeebffedecilmmmkecbbbcejibca~~~~~~~~~~~~~~~~~cfijmmlhgbekmmmkkmmkfbikihdaefc__ZZ_a`\[\\\_`_bjlkebghiiibeklmkjf__bffgicijjjjjdb`degjebhjhbegb_[[\\_aiha_WURQQRV\]eijjljeaee`YYXVUTUZ`chhikhcfc`be_`abdjljihacbhkib\[\]^`ba_b^__]]`]^\XXXXY[]^\_cfaehiljjjjkebfhicgc[Z^^]^dfgc`ZZ^_^`bffd\\chgfacekmmlia^_`cjkge``fkmmmjcZWUTTTU[]_fe``fjlkhe_VVWXYZ`djmmliggeaca[[adhgbd`XX[[ab`eb^_\YXYYYVOMMMOVYbebeaXPPPSY[`a[XQONOOTUTTUYZ[]`hkhf``[VVYZ__ZXXXYYYVONLJJIIIJMT]cfiiibYVTRNLIIHHGFFEDDDEFFGHLMMNQSSUU^egacbZZXTSST[]^ac^VTSSTVYYTLH@>=;:::960//-,,,,++++*))))))))))))))))))))*+,-........................18:CIKMUYYY[\[[[[YXYZZ[[ZXUQQOLKJIIIIIHFC>:500.+
last-align-1145/examples/multiMito.maf-141-p aaaaaaaaaaaaaaaaaaaaaa```_^\\\\\\\\\\\\\\\\\]]__```aaaaaaaaccefilnortuvvuuvwx}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}~~~~~~~~~~}|}~~~~|{|}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|xwwwwvvwxy}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}yxxxxxxxvtplgba`___________`cefghikmnnnnnnosw{}}}}{wwwvurrqqqpomjiiihhhhhhhhhgfdcb_~~~\\\]^acdhlopqqrw|~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{vrmhc_ZUPOONMJFB=876555555555555555555555555555555556;@DINSW\_acceffffgghilmnprruvvyzz{||{{{~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~zyyz}~~~~~~~~~~~~~~~}zyyz~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{{{{{{zzzz{~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|||{||zzzxwvtssssrqqqqrvyz{{||{zzz|||}}|{xwwwwxxwwx{}}~~~~~~~}{xxwwwwuuuvvvusppnnnmmmmnsx}~~~~~~~~{vvtsrplhgeeeeeeeeeffffgggggggffffeddbbbbbbaaaa``_____^^]ZWVVUUUUUTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTUUUVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVUUUUUUUTROKKIFEDCCCCCB@<84/**(%
last-align-1145/examples/multiMito.maf:142:p $&&''+.00467789;<======>>>>>>>>>>>>>>>>>>>>>>>>>>???@AACDGIJKLMQSTTVW\_bb_bb`fgc`ba_ac```^a^_`aahlmmlh`b`b`hic`bdagebijjib^^bikhfa^ZZ^]VVX]`ghfbfgdaejmmmmlhffb^_dc[XXXWWVV]_fdb`defjhaddadc^^_^achiljige``^_\SPOMMLLKLLU\_giijeaddbefdbhica_bghkicgilmmmkkmmmlljdb`_bc`ddacdbhkkje`a`[YYY_`_gjhabaekmmmmmmmkeaekmmmmljchdaeebhkkkebgdb_a`gijmmmmjc]]\]^]_c`cb\\cihgcggcfc`cc_`a_bb^_eie]YY`gjf^_]VMKIHHHHIJLNONNOSV_edbillib^^^b_WTMDA?80.,+*))&%%%%%%%%%%%%%%%%%%%%%%#"$#"(**,,,,,.067777:@ADLQRRSUWX~~~~~~~~~~~~~~~~~~~ceeacb_bd____gklha]]]]`dbfc`cjlljifd___^ba^_``djkkicihhilmmmkkmljc`cjmmmmmmmmjjkebilmjjjjmmjjliheaeaekjjkf_^[XWYZZ\]^[[\cfa_^[[]\]]]ZWVXVVVQOOOOOOOONOQT]dfic`cif`]][ZZ[[`cghd`cc^\[YYZYZXVVX_glllgffb_ab_aa^`aahhcikkecbbbbddahllg_[\\[]^]`ghgc`cjmmkkmmlhgadfadgbeklkeaea^`a_dec`c_`a`cc_`_^a`^`a_edafhjjmmmmmmmmljcihhillg_\\\\^ahhgilkklkhadd^ZWWYY\^efcaeegjebgdafc`cf`WTRQQQRSTW_gkjjljjlicfc`be_``acf`bdd]ZXX]]XUUSRQQQQRRRTUVVXY_^]^^\\]\a_adf_a`^afhjjmmjc`chbYVUUSTVV\^`_[ZZZZ\_dec[[^^ab_acfb^^bfhhgghbYXX\ailmmlg_\ZZYXYZZY[^[[][XWWUUW]_biljkmmmlihijg`XWX\\cc`cfdadagd\][YYXWWXXYVOLLLNPX[VRQMD;;::::761...............469BHKQSTY]ejkg_\XWWWX[\\ZXQQLLLLNQRWY[cedefha_XVTSSTTW^_]]\]_a``_ecaeegkibfkjihaYXZ]^]_`[RPNNOOX\\]\VUUTTVWXYXZXSQOOOOONMKHHHHHFFFDBA@@@@@@@ABEFHLOUX[YQOMLLLKKKLMNPTVX_`_fgbe`ZZXVTTT]dhhf_^`_\^]_ahic`cige``fedc^VLC:775
last-align-1145/examples/multiMito.maf-143-p #%%&&*-//356678:;<<<<<<<<<<<<<===================>>>?@@BCFHIJKLPRSTVV[_acdghimoqrtvvyzz}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~}|}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{{yvrqooooooopqqqqrtuvvuuttrokgfddc`]YTOKFA@@@@???>>>>>>>>>>>>>>>>>>>>>>>>>>>ABBDEEFFHHKLMMNQSSX\_aaeikkpuz~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|xwwwwwwwwwwwwwvvvw{~~~~~~~~~~~~~~~~~~~~~~~~~~~~}|}|}}{{|~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yxxxvssqqpoooppqtvvvwxyzzzzzz{{}~~~~~~~~~~~~~~~~~~~~~~}||||~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yxvvvwwvvvuuuutttttuz~~~~~~~~~~~~~~}xssrrrrrqqqpmmkkjhgfdcb_^^^^]\ZYYYYYYYYYYXWWWWWVVUUUUTTTTTTTTTTTTUWW[^``cefjnpqrrrqpppppsttuttsssstvxy|}~~~~~~~~~~~~~}}}}~~~~~~~~~~~~~~~~~~~~~~~~~zuututttsroommmmllkkjiihhhhhhhgggfffeeeeccb```_^\[[[ZYYYYYYYYYZZ[[[[\\\\\\\\\\\\\\]^_dhkmnnopppqpqqppqqvy{}}|}~~~~~~~~~~~~}zvrqqpolhc_ZUTTT