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                                      .___ __  __   
          _________________  __ __  __| _/|__|/  |_ 
         / ___\_` __ \__  \ |  |  \/ __ | | \\_  __\
        / /_/  >  | \// __ \|  |  / /_/ | |  ||  |  
        \___  /|__|  (____  /____/\____ | |__||__|  
       /_____/            \/           \/           
              grep rough audit - static analysis tool
                  v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
libbio-db-gff-perl-1.7.4/bin/bp_meta_gff-62-	    'password:s'  => \$PASSWORD,
libbio-db-gff-perl-1.7.4/bin/bp_meta_gff:63:	   ) or (system('pod2text', $0), exit -1);
libbio-db-gff-perl-1.7.4/bin/bp_meta_gff-64-
##############################################
libbio-db-gff-perl-1.7.4/bin/bp_load_gff-103-	    'summary'                => \$SUMMARY_STATS,
libbio-db-gff-perl-1.7.4/bin/bp_load_gff:104:	    'create'                 => \$CREATE) or (system('pod2text',$0), exit -1);
libbio-db-gff-perl-1.7.4/bin/bp_load_gff-105-
##############################################
libbio-db-gff-perl-1.7.4/bin/bp_fast_load_gff-159-	    'Temporary:s'   => \$TMPDIR,
libbio-db-gff-perl-1.7.4/bin/bp_fast_load_gff:160:	   ) or (system('pod2text',$0), exit -1);
libbio-db-gff-perl-1.7.4/bin/bp_fast_load_gff-161-
##############################################
libbio-db-gff-perl-1.7.4/bin/bp_fast_load_gff-247-  print STDERR "creating load file $file...";
libbio-db-gff-perl-1.7.4/bin/bp_fast_load_gff:248:  $DO_FAST &&= (system("mkfifo $file") == 0);  # for system(), 0 = success
libbio-db-gff-perl-1.7.4/bin/bp_fast_load_gff-249-  print STDERR "ok\n";
##############################################
libbio-db-gff-perl-1.7.4/bin/bp_fast_load_gff-426-  warn "Loading feature data and analyzing tables.  You may see database messages here...\n";
libbio-db-gff-perl-1.7.4/bin/bp_fast_load_gff:427:  $success &&= system($COMMAND{$_}) == 0 foreach @files;
libbio-db-gff-perl-1.7.4/bin/bp_fast_load_gff-428-}
##############################################
libbio-db-gff-perl-1.7.4/bin/bp_bulk_load_gff-209-	    'Temporary:s'   => \$TMPDIR,
libbio-db-gff-perl-1.7.4/bin/bp_bulk_load_gff:210:	   ) or (system('pod2text', $0), exit -1);
libbio-db-gff-perl-1.7.4/bin/bp_bulk_load_gff-211-
##############################################
libbio-db-gff-perl-1.7.4/bin/bp_bulk_load_gff-595-
libbio-db-gff-perl-1.7.4/bin/bp_bulk_load_gff:596:    $AUTH ? system("psql $AUTH -f $file $DBNAME")
libbio-db-gff-perl-1.7.4/bin/bp_bulk_load_gff:597:          : system('psql','-f', $file, $DBNAME);
libbio-db-gff-perl-1.7.4/bin/bp_bulk_load_gff-598-
##############################################
libbio-db-gff-perl-1.7.4/bin/bp_bulk_load_gff-625-    $command =~ s/\n/ /g;
libbio-db-gff-perl-1.7.4/bin/bp_bulk_load_gff:626:    $success &&= system($command) == 0;
libbio-db-gff-perl-1.7.4/bin/bp_bulk_load_gff-627-    unlink "$tmpdir/$f.$$";
##############################################
libbio-db-gff-perl-1.7.4/bin/bp_bulk_load_gff-639-  my $command = MYSQL . qq[$AUTH -N -s -e "$sql"];
libbio-db-gff-perl-1.7.4/bin/bp_bulk_load_gff:640:  $success &&= system($command) == 0;
libbio-db-gff-perl-1.7.4/bin/bp_bulk_load_gff-641-  printf STDERR "Optimization time time %5.2fs\n",(time() - $start);
##############################################
libbio-db-gff-perl-1.7.4/lib/Bio/DB/GFF/Aggregator.pm-252-    $self->components(\@synthetic_types);
libbio-db-gff-perl-1.7.4/lib/Bio/DB/GFF/Aggregator.pm:253:    $self->passthru(\@unchanged);
libbio-db-gff-perl-1.7.4/lib/Bio/DB/GFF/Aggregator.pm-254-    @$types = (@unchanged,@synthetic_types);
##############################################
libbio-db-gff-perl-1.7.4/lib/Bio/DB/GFF/Aggregator.pm-260-    $self->components(\@stypes);
libbio-db-gff-perl-1.7.4/lib/Bio/DB/GFF/Aggregator.pm:261:    $self->passthru(undef);
libbio-db-gff-perl-1.7.4/lib/Bio/DB/GFF/Aggregator.pm-262-  }
##############################################
libbio-db-gff-perl-1.7.4/lib/Bio/DB/GFF/Aggregator.pm-496-  my $factory = shift;
libbio-db-gff-perl-1.7.4/lib/Bio/DB/GFF/Aggregator.pm:497:  my $passthru = $self->passthru() or return;
libbio-db-gff-perl-1.7.4/lib/Bio/DB/GFF/Aggregator.pm-498-  return unless @$passthru;
##############################################
libbio-db-gff-perl-1.7.4/lib/Bio/DB/GFF/Adaptor/dbi.pm-178-  if (!($has_start || $has_stop)) {
libbio-db-gff-perl-1.7.4/lib/Bio/DB/GFF/Adaptor/dbi.pm:179:    $sth = $self->dbh->do_query('select fdna,foffset from fdna where fref=? order by foffset',$ref);
libbio-db-gff-perl-1.7.4/lib/Bio/DB/GFF/Adaptor/dbi.pm-180-  }
##############################################
libbio-db-gff-perl-1.7.4/lib/Bio/DB/GFF/Adaptor/dbi.pm-2131-  if (@$types) {
libbio-db-gff-perl-1.7.4/lib/Bio/DB/GFF/Adaptor/dbi.pm:2132:    my $types_where = $self->types_query($types);
libbio-db-gff-perl-1.7.4/lib/Bio/DB/GFF/Adaptor/dbi.pm-2133-    my $types_query = "select ftypeid from ftype where $types_where";
##############################################
libbio-db-gff-perl-1.7.4/lib/Bio/DB/GFF/Adaptor/dbi/pg.pm-1237-  if (!($has_start || $has_stop)) {
libbio-db-gff-perl-1.7.4/lib/Bio/DB/GFF/Adaptor/dbi/pg.pm:1238:    $sth = $self->dbh->do_query('select fdna,foffset from fdna where lower(fref)=lower(?) order by foffset',$ref);
libbio-db-gff-perl-1.7.4/lib/Bio/DB/GFF/Adaptor/dbi/pg.pm-1239-  }
##############################################
libbio-db-gff-perl-1.7.4/lib/Bio/DB/GFF/Adaptor/dbi/pg.pm-1339-  if (@$types) {
libbio-db-gff-perl-1.7.4/lib/Bio/DB/GFF/Adaptor/dbi/pg.pm:1340:    my $types_where = $self->types_query($types);
libbio-db-gff-perl-1.7.4/lib/Bio/DB/GFF/Adaptor/dbi/pg.pm-1341-    my $types_query = "select ftypeid from ftype where $types_where";