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          _________________  __ __  __| _/|__|/  |_ 
         / ___\_` __ \__  \ |  |  \/ __ | | \\_  __\
        / /_/  >  | \// __ \|  |  / /_/ | |  ||  |  
        \___  /|__|  (____  /____/\____ | |__||__|  
       /_____/            \/           \/           
              grep rough audit - static analysis tool
                  v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
libbio-graphics-perl-2.40/lib/Bio/Graphics/Glyph.pm-1764-    if ($ENV{TERM} && $ENV{TERM}=~/^(xterm|vt10)/) {
libbio-graphics-perl-2.40/lib/Bio/Graphics/Glyph.pm:1765:	my ($pager)      = grep {`which $_`} ($ENV{PAGER},'less','more');
libbio-graphics-perl-2.40/lib/Bio/Graphics/Glyph.pm-1766-	$extra           = "|$pager";
##############################################
libbio-graphics-perl-2.40/lib/Bio/Graphics/Glyph/fb_shmiggle.pm-56-				($r,$g,$b)= ($1,$2,$3);
libbio-graphics-perl-2.40/lib/Bio/Graphics/Glyph/fb_shmiggle.pm:57:				eval('$r=hex("0x'.$r.'");'); 
libbio-graphics-perl-2.40/lib/Bio/Graphics/Glyph/fb_shmiggle.pm:58:				eval('$g=hex("0x'.$g.'");'); 
libbio-graphics-perl-2.40/lib/Bio/Graphics/Glyph/fb_shmiggle.pm:59:				eval('$b=hex("0x'.$b.'");');
libbio-graphics-perl-2.40/lib/Bio/Graphics/Glyph/fb_shmiggle.pm-60-				}
##############################################
libbio-graphics-perl-2.40/lib/Bio/Graphics/Glyph/trace.pm-171-    unless ( -e $new_file_name ){
libbio-graphics-perl-2.40/lib/Bio/Graphics/Glyph/trace.pm:172:        `gunzip -c $file_name > $new_file_name`;
libbio-graphics-perl-2.40/lib/Bio/Graphics/Glyph/trace.pm-173-    }
##############################################
libbio-graphics-perl-2.40/lib/Bio/Graphics/FeatureFile.pm-1241-
libbio-graphics-perl-2.40/lib/Bio/Graphics/FeatureFile.pm:1242:	my $success = $context->eval("$setting; 1");
libbio-graphics-perl-2.40/lib/Bio/Graphics/FeatureFile.pm-1243-	$self->_callback_complain($section,$option) if $@;
##############################################
libbio-graphics-perl-2.40/scripts/bam_coverage_windows.pl-36-
libbio-graphics-perl-2.40/scripts/bam_coverage_windows.pl:37:chomp(my $name = `basename $bam .bam`);
libbio-graphics-perl-2.40/scripts/bam_coverage_windows.pl-38-print qq(track type=wiggle_0 name="$name" description="read coverage for $bam (window size $win)"\n);
##############################################
libbio-graphics-perl-2.40/scripts/bam_coverage_windows.pl-96-    print STDERR "Calculating total number of reads in $bam\n";
libbio-graphics-perl-2.40/scripts/bam_coverage_windows.pl:97:    chomp(my $total = `samtools view -c $bam`);
libbio-graphics-perl-2.40/scripts/bam_coverage_windows.pl-98-    print STDERR "$bam has $total reads\n";
##############################################
libbio-graphics-perl-2.40/scripts/coverage_to_topoview.pl-113-    
libbio-graphics-perl-2.40/scripts/coverage_to_topoview.pl:114:    chomp(my $SubsetName = `basename $file .wig.gz`);
libbio-graphics-perl-2.40/scripts/coverage_to_topoview.pl-115-
##############################################
libbio-graphics-perl-2.40/scripts/glyph_help.pl-191-    for my $viewer (qw(xv display)) { # can read from stdin
libbio-graphics-perl-2.40/scripts/glyph_help.pl:192:	$ENV{SHELL} && `which $viewer` or next;
libbio-graphics-perl-2.40/scripts/glyph_help.pl-193-	my $child = open my $fh,"|-";
##############################################
libbio-graphics-perl-2.40/scripts/index_cov_files.pl-47-	my $datfilename= 'data.cat';
libbio-graphics-perl-2.40/scripts/index_cov_files.pl:48:	system("rm $datfilename") if -e $datfilename;
libbio-graphics-perl-2.40/scripts/index_cov_files.pl-49-	open(OUTDATF,'>'.$datfilename) || die "Cannot open $datfilename!";
##############################################
libbio-graphics-perl-2.40/.pc/spelling/lib/Bio/Graphics/FeatureFile.pm-1241-
libbio-graphics-perl-2.40/.pc/spelling/lib/Bio/Graphics/FeatureFile.pm:1242:	my $success = $context->eval("$setting; 1");
libbio-graphics-perl-2.40/.pc/spelling/lib/Bio/Graphics/FeatureFile.pm-1243-	$self->_callback_complain($section,$option) if $@;
##############################################
libbio-graphics-perl-2.40/.pc/spelling/lib/Bio/Graphics/Glyph/fb_shmiggle.pm-56-				($r,$g,$b)= ($1,$2,$3);
libbio-graphics-perl-2.40/.pc/spelling/lib/Bio/Graphics/Glyph/fb_shmiggle.pm:57:				eval('$r=hex("0x'.$r.'");'); 
libbio-graphics-perl-2.40/.pc/spelling/lib/Bio/Graphics/Glyph/fb_shmiggle.pm:58:				eval('$g=hex("0x'.$g.'");'); 
libbio-graphics-perl-2.40/.pc/spelling/lib/Bio/Graphics/Glyph/fb_shmiggle.pm:59:				eval('$b=hex("0x'.$b.'");');
libbio-graphics-perl-2.40/.pc/spelling/lib/Bio/Graphics/Glyph/fb_shmiggle.pm-60-				}
##############################################
libbio-graphics-perl-2.40/.pc/spelling/lib/Bio/Graphics/Glyph/trace.pm-171-    unless ( -e $new_file_name ){
libbio-graphics-perl-2.40/.pc/spelling/lib/Bio/Graphics/Glyph/trace.pm:172:        `gunzip -c $file_name > $new_file_name`;
libbio-graphics-perl-2.40/.pc/spelling/lib/Bio/Graphics/Glyph/trace.pm-173-    }