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        / /_/  >  | \// __ \|  |  / /_/ | |  ||  |  
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              grep rough audit - static analysis tool
                  v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
macs-2.2.7.1/DOCKER/README.md-24-
macs-2.2.7.1/DOCKER/README.md:25:```docker run -v $PWD:/data/ fooliu/macs2 callpeak -t /data/chip-seq-file.bam -c /data/control-seq-file.bam -n test-run --outdir /data/```
macs-2.2.7.1/DOCKER/README.md-26-
macs-2.2.7.1/DOCKER/README.md:27:The first part ```-v $PWD:/data/``` will mount the CURRENT directory ```$PWD``` to ```/data/``` in the container, so please don't forget to add ```/data/``` to the path of input files with ```-t``` and/or ```-c```, and don't forget to set the ```--outdir``` option to ```/data/```. The final outputs will be directly written into the CURRENT directory. Extra MACS2 options can be modified or added after ```docker run -v $PWD:/data/ fooliu/macs2```. The ENTRYPOINT (or the default command when run the container) has been set as ```macs2```.
macs-2.2.7.1/DOCKER/README.md-28-
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macs-2.2.7.1/INSTALL.md-32-
macs-2.2.7.1/INSTALL.md:33:`$ python3 -m venv MyPythonEnv/`
macs-2.2.7.1/INSTALL.md-34-
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macs-2.2.7.1/INSTALL.md-36-
macs-2.2.7.1/INSTALL.md:37:`$ source MyPythonEnv/bin/active`
macs-2.2.7.1/INSTALL.md-38-
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macs-2.2.7.1/INSTALL.md-70-
macs-2.2.7.1/INSTALL.md:71: `$ python setup.py install`
macs-2.2.7.1/INSTALL.md-72-
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macs-2.2.7.1/INSTALL.md-83-
macs-2.2.7.1/INSTALL.md:84: `$ python setup.py --help`
macs-2.2.7.1/INSTALL.md-85-
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macs-2.2.7.1/INSTALL.md-88-
macs-2.2.7.1/INSTALL.md:89: `$ python setup.py install --prefix /home/taoliu/`
macs-2.2.7.1/INSTALL.md-90-
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macs-2.2.7.1/INSTALL.md-138-
macs-2.2.7.1/INSTALL.md:139: `$ export PATH=/home/taoliu/bin:$PATH`
macs-2.2.7.1/INSTALL.md-140-
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macs-2.2.7.1/README.md-504-
macs-2.2.7.1/README.md:505:   `$ Rscript NAME_model.r`
macs-2.2.7.1/README.md-506-
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macs-2.2.7.1/test/cmdlinetest-181-flag=0
macs-2.2.7.1/test/cmdlinetest:182:for i in `ls ${TAG}_run_*/*.log`;do
macs-2.2.7.1/test/cmdlinetest-183-    echo " checking $i..."
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macs-2.2.7.1/test/cmdlinetest-210-    let "n=0"
macs-2.2.7.1/test/cmdlinetest:211:    for j in `ls standard_results_${i}/*`; do
macs-2.2.7.1/test/cmdlinetest:212:	k=`basename $j`
macs-2.2.7.1/test/cmdlinetest-213-	let "n+=1"
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macs-2.2.7.1/test/cmdlinetest_update-181-flag=0
macs-2.2.7.1/test/cmdlinetest_update:182:for i in `ls ${TAG}_run_*/*.log`;do
macs-2.2.7.1/test/cmdlinetest_update-183-    echo " checking $i..."
##############################################
macs-2.2.7.1/test/cmdlinetest_update-208-    let "n=0"
macs-2.2.7.1/test/cmdlinetest_update:209:    for j in `ls standard_results_${i}/*`; do
macs-2.2.7.1/test/cmdlinetest_update:210:	k=`basename $j`
macs-2.2.7.1/test/cmdlinetest_update-211-	let "n+=1"
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macs-2.2.7.1/test/prockreport-18-while [ $(ps -p $PID|wc -l) -gt 1 ];do
macs-2.2.7.1/test/prockreport:19:    REPORT=`ps -o time,rss -p $PID | tail -1`
macs-2.2.7.1/test/prockreport:20:    NLINE=`ps -o time,rss -p $PID | wc -l`
macs-2.2.7.1/test/prockreport-21-    ARR=(${REPORT//\ +/ })
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macs-2.2.7.1/test/pyprofile-18-PROF=$1
macs-2.2.7.1/test/pyprofile:19:MAIN=`basename $2`
macs-2.2.7.1/test/pyprofile-20-CMD=( $@ )
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macs-2.2.7.1/debian/tests/run-unit-test-8-if [ "$AUTOPKGTEST_TMP" = "" ] ; then
macs-2.2.7.1/debian/tests/run-unit-test:9:  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
macs-2.2.7.1/debian/tests/run-unit-test-10-  trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM