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grep rough audit - static analysis tool
v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-2-MKRISTTITTTITITTGNGAG
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta:3:>ESCO001c01a_000020 D ATG TGA 337 2799 Valid thrA 2463 _b0002_NP_414543.1_ b0002 1 337 2799 | enzyme; Amino acid biosynthesis: Threonine 1.5.1.8 metabolism; building block biosynthesis; amino acids; threonine 1.5.1.21 metabolism; building block biosynthesis; amino acids; homoserine 7.1 location of gene products; cytoplasm fused aspartokinase I and homoserine dehydrogenase I (translation)
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-4-MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAM
##############################################
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-20-VTAAGVFADLLRTLSWKLGV
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta:21:>ESCO001c01a_000030 D ATG TAA 2801 3733 Valid thrB 933 _b0003_NP_414544.1_ b0003 1 2801 3733 | enzyme; Amino acid biosynthesis: Threonine 1.5.1.8 metabolism; building block biosynthesis; amino acids; threonine 7.1 location of gene products; cytoplasm homoserine kinase (translation)
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-22-MVKVYAPASSANMSVGFDVLGAAVTPVDGALLGDVVTVEAAETFSLNNLG
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macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-28-DTAGARVLEN
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta:29:>ESCO001c01a_000040 D ATG TAA 3734 5020 Valid thrC 1287 _b0004_NP_414545.1_ b0004 1 3734 5020 | enzyme; Amino acid biosynthesis: Threonine 1.5.1.8 metabolism; building block biosynthesis; amino acids; threonine 7.1 location of gene products; cytoplasm threonine synthase (translation)
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-30-MKLYNLKDHNEQVSFAQAVTQGLGKNQGLFFPHDLPEFSLTEIDEMLKLD
##############################################
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-59-PVFDPLRYPDIGRQLSPDAWDDVSQE
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta:60:>ESCO001c01a_000080 D ATG TAA 8238 9191 Valid talB 954 _b0008_NP_414549.1_ b0008 1 8238 9191 | enzyme; Central intermediary metabolism: Non-oxidative branch, pentose pathway 1.7.3 metabolism; central intermediary metabolism; pentose phosphate shunt, non-oxidative branch 7.1 location of gene products; cytoplasm transaldolase B (translation)
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-61-MTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRK
##############################################
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-87-NSDNDNKRCVSKITFSGHTVNSSDMATLKIIGDD
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta:88:>ESCO001c01a_000130 D ATG TAA 12163 14079 Valid dnaK 1917 _b0014_NP_414555.1_ b0014 1 12163 14079 | factor; Chaperones 2.3.4 information transfer; protein related; chaperoning, folding 5.5.1 cell processes; adaptation to stress; osmotic pressure 7.1 location of gene products; cytoplasm chaperone Hsp70, co-chaperone with DnaJ (translation)
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-89-MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLV
##############################################
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-681-AVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVARLLGVIA
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta:682:>ESCO001c01a_000840 D ATG TAG 94650 96008 Valid murF 1359 _b0086_NP_414628.1_ b0086 1 94650 96008 | enzyme; Murein sacculus, peptidoglycan 1.6.7 metabolism; macromolecules (cellular constituent) biosynthesis; peptidoglycan (murein) 1.7.34 metabolism; central intermediary metabolism; peptidoglycan (murein) 1.7.34 metabolism; central intermediary metabolism; peptidoglycan (murein) turnover, recycling 7.1 location of gene products; cytoplasm UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase (translation)
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-683-MISVTLSQLTDILNGELQGADITLDAVTTDTRKLTPGCLFVALKGERFDA
##############################################
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-1627-YLIQFAGDRIVRAVTRK
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta:1628:>ESCO001c01a_001950 C ATG TGA 221614 222645 Valid metN 1032 _b0199_NP_414741.1_ b0199 1 221614 222645 | transport; Transport of small molecules: Amino acids, amines 4.3.A.1.a transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component 7.1 location of gene products; cytoplasm DL-methionine transporter subunit (translation)
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-1629-MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRC
##############################################
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-1780-AGDVTDFSAGERIIS
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta:1781:>ESCO001c01a_002290 D ATG TGA 250898 251953 Valid dinB 1056 _b0231_NP_414766.1_ b0231 1 250898 251953 | 2.1.1 information transfer; DNA related; DNA replication 5.8 cell processes; SOS response 7.1 location of gene products; cytoplasm DNA polymerase IV (translation)
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-1782-MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARK
##############################################
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-23177-DSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta:23178:>ESCO001c01a_031770 C TTG TAA 3307055 3309190 Valid pnp 2136 _b3164_NP_417633.4_ b3164 1 3307055 3309190 | enzyme; RNA synthesis, modification, DNA transcription 1.2.1 metabolism; macromolecule degradation; RNA 2.2.4 information transfer; RNA related; RNA degradation 7.1 location of gene products; cytoplasm polynucleotide phosphorylase/polyadenylase (translation)
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-23179-MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKA
##############################################
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-24964-V
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta:24965:>ESCO001c01a_034320 C ATG TGA 3553855 3554871 Valid rtcA 1017 _b4475_YP_026219.1_ b4475 1 3553855 3554871 | enzyme; RNA synthesis, modification, DNA transcription 2.2 information transfer; RNA related 2.2.3 information transfer; RNA related; RNA modification 7.1 location of gene products; cytoplasm RNA 3'-terminal phosphate cyclase (translation)
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-24966-MKRMIALDGAQGEGGGQILRSALSLSMITGQPFTITSIRAGRAKPGLLRQ
##############################################
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-27177-AGTSLTARYQQAFQAMGCDVTAVAGDTAFQAGIRSIAHAVAN
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta:27178:>ESCO001c01a_037210 C ATG TGA 3872494 3873183 Valid dgoR 690 _b4479_YP_026239.1_ b4479 1 3872494 3873183 | 1.1.1 metabolism; carbon utilization; carbon compounds 2.2.2 information transfer; RNA related; transcription related 3.1.2.3 regulation; type of regulation; transcriptional level; repressor 3.3.1 regulation; genetic unit regulated; operon 7.1 location of gene products; cytoplasm putative DNA-binding transcriptional regulator (translation)
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-27179-MTLNKTDRIVITLGKQIVHGKYVPGSPLPAEAELCEEFATSRNIIREVFR
##############################################
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-27249-MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta:27250:>ESCO001c01a_037300 D GTG TGA 3882516 3882875 Valid rnpA 360 _b3704_NP_418159.1_ b3704 1 3882516 3882875 | enzyme; Degradation of RNA 1.2.1 metabolism; macromolecule degradation; RNA 2.2.3 information transfer; RNA related; RNA modification 7.1 location of gene products; cytoplasm protein C5 component of RNase P (translation)
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-27251-MVKLAFPRELRLLTPSQFTFVFQQPQRAGTPQITILGRLNSLGHPRIGLT
##############################################
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-27671-LHQAIVDAIIQSDGDAAFKACQALLRSPDK
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta:27672:>ESCO001c01a_037890 C GTG TAA 3945151 3945990 Valid hdfR 840 _b4480_YP_026246.1_ b4480 1 3945151 3945990 | 2.2.2 information transfer; RNA related; transcription related 3.1.2.3 regulation; type of regulation; transcriptional level; repressor 3.3.1 regulation; genetic unit regulated; operon 7.1 location of gene products; cytoplasm DNA-binding transcriptional regulator (translation)
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-27673-MDTELLKTFLEVSRTRHFGRAAESLYLTQSAVSFRIRQLENQLGVNLFTR
##############################################
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-28221-AESEKTEE
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta:28222:>ESCO001c01a_038630 D ATG TAG 4021577 4022359 Valid tatD 783 _b4483_YP_026271.1_ b4483 1 4021577 4022359 | 7.1 location of gene products; cytoplasm quality control of Tat-exported FeS proteins; Mg-dependent cytoplasmic DNase (translation)
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-28223-MFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLAR
##############################################
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-28749-ISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta:28750:>ESCO001c01a_039350 D ATG TAG 4103843 4104343 Valid cpxP 501 _b4484_YP_026277.1_ b4484 1 4103843 4104343 | 7.1 location of gene products; cytoplasm 7.2 location of gene products; periplasmic space inhibitor of the cpx response; periplasmic adaptor protein (translation)
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-28751-MRIVTAAVMASTLAVSSLSHAAEVGSGDNWHPGEELTQRSTQSHMFDGIS
##############################################
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-31114-YLPDTAKEELEKKKNMGY
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta:31115:>ESCO001c01a_042550 D ATG TAA 4449081 4450583 Valid ytfR 1503 _b4485_YP_026286.1_ b4485 1 4449081 4450583 | putative transport; Not classified 4.3.A.1.a transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component 7.1 location of gene products; cytoplasm 4.S.173 transport; substrate; sugar putative sugar transporter subunit: ATP-binding (translation)
macsyfinder-1.0.5/data/sequence_data/datatest_gembase.fasta-31116-MTTDQHQEILRTEGLSKFFPGVKALDNVDFSLRRGEIMALLGENGAGKST
##############################################
macsyfinder-1.0.5/debian/tests/run-unit-test-4-if [ "$AUTOPKGTEST_TMP" = "" ] ; then
macsyfinder-1.0.5/debian/tests/run-unit-test:5:AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
macsyfinder-1.0.5/debian/tests/run-unit-test-6-fi