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        / /_/  >  | \// __ \|  |  / /_/ | |  ||  |  
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              grep rough audit - static analysis tool
                  v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
metabat-2.15/MetaBAT2PaperSupplementaryScripts/benchmark.R-36-    if (type == 'MetaBAT') {
metabat-2.15/MetaBAT2PaperSupplementaryScripts/benchmark.R:37:        files <- system(sprintf("ls %s.* | egrep '\\.[0-9]+$'", file), intern=T)    
metabat-2.15/MetaBAT2PaperSupplementaryScripts/benchmark.R-38-        if(length(files) == 0)
##############################################
metabat-2.15/MetaBAT2PaperSupplementaryScripts/binning.R-7-#system("runBBmap.sh CAMI_low_RL_S001__insert_270_GoldStandardAssembly.fasta.gz RL_S001__insert_270.fq.gz")
metabat-2.15/MetaBAT2PaperSupplementaryScripts/binning.R:8:#system("for i in $(ls *.fq.gz); do runBBmap.sh CAMI_medium_GoldStandardAssembly.fasta.gz $i; done > /dev/null 2>&1")
metabat-2.15/MetaBAT2PaperSupplementaryScripts/binning.R:9:#system("for i in $(ls *.fq.gz); do runBBmap.sh CAMI_high_GoldStandardAssembly.fasta.gz $i; done > /dev/null 2>&1")
metabat-2.15/MetaBAT2PaperSupplementaryScripts/binning.R-10-
##############################################
metabat-2.15/MetaBAT2PaperSupplementaryScripts/binning.R-106-
metabat-2.15/MetaBAT2PaperSupplementaryScripts/binning.R:107:system("paste depth.txt.mb.* | cut -f1,2,4,6,8 -d$'\t' > depth-only-medium.txt")
metabat-2.15/MetaBAT2PaperSupplementaryScripts/binning.R-108-system('concoct --composition_file CAMI_medium_GoldStandardAssembly.fasta --coverage_file depth-only-medium.txt 2>CONCOCT.log')
metabat-2.15/MetaBAT2PaperSupplementaryScripts/binning.R-109-
metabat-2.15/MetaBAT2PaperSupplementaryScripts/binning.R:110:system("paste depth.txt.mb.* | cut -f1,2,4,6,8,10 -d$'\t' > depth-only-high.txt")
metabat-2.15/MetaBAT2PaperSupplementaryScripts/binning.R-111-system('concoct --composition_file CAMI_high_GoldStandardAssembly.fasta --coverage_file depth-only-high.txt 2>CONCOCT.log')
##############################################
metabat-2.15/opt/benchmark.R-36-    if (type == 'MetaBAT') {
metabat-2.15/opt/benchmark.R:37:        files <- system(sprintf("ls %s.* | egrep '\\.[0-9]+$'", file), intern=T)    
metabat-2.15/opt/benchmark.R-38-        if(length(files) == 0)
##############################################
metabat-2.15/src/igraph.h-159-igraph_i_rng_mt19937_state_t igraph_i_rng_default_state;
metabat-2.15/src/igraph.h:160:#define addr(a) (&a)
metabat-2.15/src/igraph.h:161:igraph_rng_t igraph_i_rng_default = { addr(igraph_rngtype_mt19937), addr(igraph_i_rng_default_state),
metabat-2.15/src/igraph.h-162-/* def= */1 };
##############################################
metabat-2.15/debian/createmanpages-4-
metabat-2.15/debian/createmanpages:5:VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//' -e 's/[+~]dfsg$//'`
metabat-2.15/debian/createmanpages-6-NAME=`grep "^Description:" debian/control | sed 's/^Description: *//' | head -n1`
##############################################
metabat-2.15/debian/patches/use_debian_packaged_libs.patch-15- 
metabat-2.15/debian/patches/use_debian_packaged_libs.patch:16: include(${CMAKE_ROOT}/Modules/ExternalProject.cmake)
metabat-2.15/debian/patches/use_debian_packaged_libs.patch-17--include(cmake/zlib.cmake)
##############################################
metabat-2.15/.pc/use_debian_packaged_libs.patch/CMakeLists.txt-9-
metabat-2.15/.pc/use_debian_packaged_libs.patch/CMakeLists.txt:10:include(${CMAKE_ROOT}/Modules/ExternalProject.cmake)
metabat-2.15/.pc/use_debian_packaged_libs.patch/CMakeLists.txt-11-include(cmake/zlib.cmake)
##############################################
metabat-2.15/CMakeLists.txt-9-
metabat-2.15/CMakeLists.txt:10:include(${CMAKE_ROOT}/Modules/ExternalProject.cmake)
metabat-2.15/CMakeLists.txt-11-find_package(ZLIB REQUIRED)