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/ ___\_` __ \__ \ | | \/ __ | | \\_ __\
/ /_/ > | \// __ \| | / /_/ | | || |
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/_____/ \/ \/
grep rough audit - static analysis tool
v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
minc-tools-2.3.00+dfsg/CMakeLists.txt-45-
minc-tools-2.3.00+dfsg/CMakeLists.txt:46:INCLUDE( ${LIBMINC_USE_FILE} )
minc-tools-2.3.00+dfsg/CMakeLists.txt-47-INCLUDE( InstallManPages )
##############################################
minc-tools-2.3.00+dfsg/cmake-modules/FindHDF5.cmake-10-IF(EXISTS ${PROJECT_CMAKE}/Hdf5Config.cmake)
minc-tools-2.3.00+dfsg/cmake-modules/FindHDF5.cmake:11: INCLUDE(${PROJECT_CMAKE}/Hdf5Config.cmake)
minc-tools-2.3.00+dfsg/cmake-modules/FindHDF5.cmake-12-ENDIF(EXISTS ${PROJECT_CMAKE}/Hdf5Config.cmake)
##############################################
minc-tools-2.3.00+dfsg/progs/mincheader/mincheader-77-
minc-tools-2.3.00+dfsg/progs/mincheader/mincheader:78:me=`basename $0`
minc-tools-2.3.00+dfsg/progs/mincheader/mincheader-79-usage="Usage: $me [-data] <minc file>"
##############################################
minc-tools-2.3.00+dfsg/progs/mincheader/mincheader-111-# For a compressed file, dump header only unless directed otherwise
minc-tools-2.3.00+dfsg/progs/mincheader/mincheader:112:dumpfile=`mincexpand "$1" $tmpfile -name_only $header_opts`
minc-tools-2.3.00+dfsg/progs/mincheader/mincheader-113-if [ "$dumpfile" = $tmpfile -a $header_only = yes ]
##############################################
minc-tools-2.3.00+dfsg/progs/minchistory/minchistory.in-67- $counter = 1;
minc-tools-2.3.00+dfsg/progs/minchistory/minchistory.in:68: foreach (`mincinfo -attvalue :history "$fname"`){
minc-tools-2.3.00+dfsg/progs/minchistory/minchistory.in-69- chomp;
##############################################
minc-tools-2.3.00+dfsg/progs/xfm/xfmflip.in-107-# do the dogy and add a history string (this may well bite me later on)
minc-tools-2.3.00+dfsg/progs/xfm/xfmflip.in:108:my @buf = split("\n", `cat $outxfm`);
minc-tools-2.3.00+dfsg/progs/xfm/xfmflip.in-109-open(FH, ">$outxfm");
##############################################
minc-tools-2.3.00+dfsg/progs/mincedit/mincedit-85-
minc-tools-2.3.00+dfsg/progs/mincedit/mincedit:86:me=`basename $0`
minc-tools-2.3.00+dfsg/progs/mincedit/mincedit-87-usage="Usage: $me <minc file> [<editor>]"
##############################################
minc-tools-2.3.00+dfsg/progs/mincedit/mincedit-135-infile="$1"
minc-tools-2.3.00+dfsg/progs/mincedit/mincedit:136:backup_infile=`echo ${infile} | sed -e "s/\.mnc/\.bu-$$\.mnc/"`
minc-tools-2.3.00+dfsg/progs/mincedit/mincedit-137-cdl_prefix=mincedit-$$
##############################################
minc-tools-2.3.00+dfsg/progs/mincdiff/mincdiff-87-# Expand the files
minc-tools-2.3.00+dfsg/progs/mincdiff/mincdiff:88:dumpfile1=`mincexpand $1 $tmp1 -name_only`
minc-tools-2.3.00+dfsg/progs/mincdiff/mincdiff:89:dumpfile2=`mincexpand $2 $tmp2 -name_only`
minc-tools-2.3.00+dfsg/progs/mincdiff/mincdiff-90-
##############################################
minc-tools-2.3.00+dfsg/progs/mincpik/mincpik.in-160-
minc-tools-2.3.00+dfsg/progs/mincpik/mincpik.in:161: chomp($buf = `mincstats -quiet -pctT 5 $infile`);
minc-tools-2.3.00+dfsg/progs/mincpik/mincpik.in-162- $buf *= 1.0;
##############################################
minc-tools-2.3.00+dfsg/progs/mincpik/mincpik.in-164-
minc-tools-2.3.00+dfsg/progs/mincpik/mincpik.in:165: chomp($buf = `mincstats -quiet -pctT 95 $infile`);
minc-tools-2.3.00+dfsg/progs/mincpik/mincpik.in-166- $buf *= 1.0;
##############################################
minc-tools-2.3.00+dfsg/progs/mincpik/mincpik.in-203- $infile;
minc-tools-2.3.00+dfsg/progs/mincpik/mincpik.in:204: ($n_slices, $img_x, $img_y, $img_step_x, $img_step_y, $dim_names) = split("\n", `$args`);
minc-tools-2.3.00+dfsg/progs/mincpik/mincpik.in-205-
##############################################
minc-tools-2.3.00+dfsg/progs/mincpik/mincpik.in-382-
minc-tools-2.3.00+dfsg/progs/mincpik/mincpik.in:383: @buf = split(/\n/, `mincstats -min -max -quiet $infile`);
minc-tools-2.3.00+dfsg/progs/mincpik/mincpik.in-384- @{$opt{'image_range'}}[0] = $buf[0] * 1.0;
##############################################
minc-tools-2.3.00+dfsg/progs/minccomplete/minccomplete.in-63- # first check that the header is "valid"
minc-tools-2.3.00+dfsg/progs/minccomplete/minccomplete.in:64: if(system("mincdump -h $infile 2> /dev/null 1>&2") == 0){
minc-tools-2.3.00+dfsg/progs/minccomplete/minccomplete.in-65- $error = 0;
##############################################
minc-tools-2.3.00+dfsg/progs/minccomplete/minccomplete.in-72- if($error == 0){
minc-tools-2.3.00+dfsg/progs/minccomplete/minccomplete.in:73: chomp($version = `mincinfo -minc_version $infile 2> /dev/null`);
minc-tools-2.3.00+dfsg/progs/minccomplete/minccomplete.in-74-
##############################################
minc-tools-2.3.00+dfsg/progs/minccomplete/minccomplete.in-77-
minc-tools-2.3.00+dfsg/progs/minccomplete/minccomplete.in:78: chomp($dump = `mincinfo -attvalue image:complete $infile 2> /dev/null`);
minc-tools-2.3.00+dfsg/progs/minccomplete/minccomplete.in-79- $error = -1 if ($dump ne 'true_');
##############################################
minc-tools-2.3.00+dfsg/progs/minccomplete/minccomplete.in-86-
minc-tools-2.3.00+dfsg/progs/minccomplete/minccomplete.in:87: if(system("xfm2param $infile 2> /dev/null 1>&2") == 0){
minc-tools-2.3.00+dfsg/progs/minccomplete/minccomplete.in-88- $error = 0;
##############################################
minc-tools-2.3.00+dfsg/progs/minccomplete/minccomplete.in-164-
minc-tools-2.3.00+dfsg/progs/minccomplete/minccomplete.in:165: if [ `minccomplete ${infile}` ]
minc-tools-2.3.00+dfsg/progs/minccomplete/minccomplete.in-166- then
##############################################
minc-tools-2.3.00+dfsg/conversion/mif2mnc/mif2mnc-38-
minc-tools-2.3.00+dfsg/conversion/mif2mnc/mif2mnc:39:chomp(my($me) = `basename $0`);
minc-tools-2.3.00+dfsg/conversion/mif2mnc/mif2mnc-40-my($tmpfile) = "/tmp/$me-$$.raw";
##############################################
minc-tools-2.3.00+dfsg/conversion/mri_to_minc/mri_to_minc.pl-924- print STDERR "Compressing file \"$mincfile\"\n";
minc-tools-2.3.00+dfsg/conversion/mri_to_minc/mri_to_minc.pl:925: system("gzip $mincfile");
minc-tools-2.3.00+dfsg/conversion/mri_to_minc/mri_to_minc.pl-926- }
##############################################
minc-tools-2.3.00+dfsg/conversion/mri_to_minc/siemens_to_minc.pl-811- # Check for a numaris 2 file
minc-tools-2.3.00+dfsg/conversion/mri_to_minc/siemens_to_minc.pl:812: $magic = `extract_acr_nema $filename $numaris2_magic_id 2>/dev/null`;
minc-tools-2.3.00+dfsg/conversion/mri_to_minc/siemens_to_minc.pl-813- if ($magic eq $numaris2_magic) {
##############################################
minc-tools-2.3.00+dfsg/conversion/mri_to_minc/siemens_to_minc.pl-818- # Check for a numaris 3 file
minc-tools-2.3.00+dfsg/conversion/mri_to_minc/siemens_to_minc.pl:819: $magic = `extract_acr_nema $filename $numaris3_magic_id 2>/dev/null`;
minc-tools-2.3.00+dfsg/conversion/mri_to_minc/siemens_to_minc.pl-820- if ($magic eq $numaris3_magic) {
##############################################
minc-tools-2.3.00+dfsg/conversion/mri_to_minc/dicom_to_minc.pl-224- local($length) = ($file_offset + 12) * 2;
minc-tools-2.3.00+dfsg/conversion/mri_to_minc/dicom_to_minc.pl:225: $value = `extract $offset $length $filename | extract_acr_nema -i 2 0`;
minc-tools-2.3.00+dfsg/conversion/mri_to_minc/dicom_to_minc.pl-226- if (length($value) == 4) {
##############################################
minc-tools-2.3.00+dfsg/conversion/Acr_nema/dicom_client_routines.c-433- if ((*host >= '0') && (*host <= '9')) {
minc-tools-2.3.00+dfsg/conversion/Acr_nema/dicom_client_routines.c:434: server.sin_addr.s_addr = inet_addr(host);
minc-tools-2.3.00+dfsg/conversion/Acr_nema/dicom_client_routines.c-435- server.sin_family = AF_INET;
##############################################
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc-225- # read in .mat file, convert to sensical format, remove first and last line
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc:226: @dump = `mat1dump $matfile`;
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc-227- for($c=1; $c<4; $c++){
##############################################
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc-257- }
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc:258: print STDOUT `mat1dump $matfile`;
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc-259- }
##############################################
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc-789-
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc:790: @data = split(/\n/, `$args`);
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc-791-
##############################################
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc-822-
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc:823: chomp(my $dt = `mincinfo -vartype image $mncfile`);
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc-824- $h->{datatype} = $dtypes{$dt}[0];
##############################################
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana_dump.pl-14-
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana_dump.pl:15:chomp(my($prog) = `basename $0`);
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana_dump.pl-16-my($Usage) = "Usage: $prog <ana.hdr>\n";
##############################################
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc_xfm_reduce.pl-105-
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc_xfm_reduce.pl:106:chomp(my($prog) = `basename $0`);
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc_xfm_reduce.pl-107-
##############################################
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc_xfm_reduce.pl-174- if ($verbose){ print STDOUT $args; }
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc_xfm_reduce.pl:175: system($args) == 0 or die "Died during mincextract command\n";
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc_xfm_reduce.pl-176- }
##############################################
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc_xfm_reduce.pl-202- if (!-e "$anafile.mat"){ die "$prog: Couldn't find $anafile.mat\n"; }
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc_xfm_reduce.pl:203: print STDOUT `mat1dump $anafile.mat`;
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc_xfm_reduce.pl-204- }
##############################################
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc_xfm_reduce.pl-215- # perl line noise to read in a text file Matrix into MatrixReal
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc_xfm_reduce.pl:216: my @matdump = `mat1dump $anafile.mat`;
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc_xfm_reduce.pl-217- $M = Math::MatrixReal->new_from_string("[ " . join(" ]\n[ ", @matdump[1..4]) . " ]\n");
##############################################
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc_xfm_reduce.pl-269- # perl line noise to read in a text file Matrix into MatrixReal
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc_xfm_reduce.pl:270: my @MNIdump = `cat $xfmfile`;
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc_xfm_reduce.pl-271-
##############################################
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc_xfm_reduce.pl-602- if (!-e $imgfile && -e "$imgfile.gz"){
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc_xfm_reduce.pl:603: system("gunzip $imgfile.gz\n") == 0 or die "Died during gunzip\n";
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc_xfm_reduce.pl-604- }
##############################################
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc_xfm_reduce.pl-606- if ($verbose){ print STDOUT $args; }
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc_xfm_reduce.pl:607: system($args) == 0 or die "Died during rawtominc system command\n";
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc_xfm_reduce.pl-608- }
##############################################
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc_xfm_reduce.pl-644-
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc_xfm_reduce.pl:645: chomp(my $dt = `mincinfo -vartype image $mncfile`);
minc-tools-2.3.00+dfsg/conversion/ana2mnc/ana2mnc_xfm_reduce.pl-646- $h->{datatype} = $dtypes{$dt}[0];
##############################################
minc-tools-2.3.00+dfsg/conversion/sdt2mnc/sdt2mnc-104- # first convert the header to a hash
minc-tools-2.3.00+dfsg/conversion/sdt2mnc/sdt2mnc:105: foreach (split(/\n/, `cat $infile`)){
minc-tools-2.3.00+dfsg/conversion/sdt2mnc/sdt2mnc-106- ($key, $val) = split(/\:/, $_, 2);
##############################################
minc-tools-2.3.00+dfsg/conversion/image_filters/Makefile-5-default:
minc-tools-2.3.00+dfsg/conversion/image_filters/Makefile:6: $(MAKE) `ls *.c |sed 's/\.c$$//'`
minc-tools-2.3.00+dfsg/conversion/image_filters/Makefile-7-
minc-tools-2.3.00+dfsg/conversion/image_filters/Makefile-8-clean:
minc-tools-2.3.00+dfsg/conversion/image_filters/Makefile:9: rm -f `ls *.c |sed 's/\.c$$//'`
minc-tools-2.3.00+dfsg/conversion/image_filters/Makefile-10-
##############################################
minc-tools-2.3.00+dfsg/conversion/dicomserver_sonata/dicomserver-nondebug2.c-814- //execl("/sbin/cat", "/sbin/cat", "/usr/local/mni/bin", NULL);
minc-tools-2.3.00+dfsg/conversion/dicomserver_sonata/dicomserver-nondebug2.c:815: //system ("set path=($path /usr/local/mni/bin)");
minc-tools-2.3.00+dfsg/conversion/dicomserver_sonata/dicomserver-nondebug2.c-816-
##############################################
minc-tools-2.3.00+dfsg/conversion/siemens_mosaic2mnc/siemens_mosaic2mnc-118- $ref .= " = $value";
minc-tools-2.3.00+dfsg/conversion/siemens_mosaic2mnc/siemens_mosaic2mnc:119: eval($ref);
minc-tools-2.3.00+dfsg/conversion/siemens_mosaic2mnc/siemens_mosaic2mnc-120-
##############################################
minc-tools-2.3.00+dfsg/conversion/siemens_mosaic2mnc/siemens_mosaic2mnc-181-&do_cmd('dicom3_to_minc', $tmpdir, $infile);
minc-tools-2.3.00+dfsg/conversion/siemens_mosaic2mnc/siemens_mosaic2mnc:182:chomp($conv_fn = `ls -1 $tmpdir/*.mnc`);
minc-tools-2.3.00+dfsg/conversion/siemens_mosaic2mnc/siemens_mosaic2mnc-183-print STDOUT " +++ Found file $conv_fn\n" if !$opt{quiet};
##############################################
minc-tools-2.3.00+dfsg/conversion/siemens_mosaic2mnc/siemens_mosaic2mnc-186-my($code);
minc-tools-2.3.00+dfsg/conversion/siemens_mosaic2mnc/siemens_mosaic2mnc:187:chomp($buf = `mincinfo -dimnames $conv_fn`);
minc-tools-2.3.00+dfsg/conversion/siemens_mosaic2mnc/siemens_mosaic2mnc-188-$buf =~ s/\ $//;
##############################################
minc-tools-2.3.00+dfsg/conversion/siemens_mosaic2mnc/siemens_mosaic2mnc-227-my(@mosaic_size, @concat_files);
minc-tools-2.3.00+dfsg/conversion/siemens_mosaic2mnc/siemens_mosaic2mnc:228:chomp($mosaic_size[0] = `mincinfo -dimlength $dimnames[0] $conv_fn`);
minc-tools-2.3.00+dfsg/conversion/siemens_mosaic2mnc/siemens_mosaic2mnc:229:chomp($mosaic_size[1] = `mincinfo -dimlength $dimnames[1] $conv_fn`);
minc-tools-2.3.00+dfsg/conversion/siemens_mosaic2mnc/siemens_mosaic2mnc-230-
##############################################
minc-tools-2.3.00+dfsg/conversion/siemens_mosaic2mnc/siemens_mosaic2mnc-302- "-attvalue $dimnames[1]:step $conv_fn";
minc-tools-2.3.00+dfsg/conversion/siemens_mosaic2mnc/siemens_mosaic2mnc:303:my(@steps) = split(' ', `$args`);
minc-tools-2.3.00+dfsg/conversion/siemens_mosaic2mnc/siemens_mosaic2mnc-304-if(($steps[0] != $gen_hdr->{xstep}) ||
##############################################
minc-tools-2.3.00+dfsg/conversion/siemens_mosaic2mnc/siemens_mosaic2mnc-316-# as dicom_to_minc has already extracted these, simply read in the direction cosines
minc-tools-2.3.00+dfsg/conversion/siemens_mosaic2mnc/siemens_mosaic2mnc:317:$gen_hdr->{xdircos} = [split(' ', `mincinfo -attvalue xspace:direction_cosines $conv_fn`)];
minc-tools-2.3.00+dfsg/conversion/siemens_mosaic2mnc/siemens_mosaic2mnc:318:$gen_hdr->{ydircos} = [split(' ', `mincinfo -attvalue yspace:direction_cosines $conv_fn`)];
minc-tools-2.3.00+dfsg/conversion/siemens_mosaic2mnc/siemens_mosaic2mnc:319:$gen_hdr->{zdircos} = [split(' ', `mincinfo -attvalue zspace:direction_cosines $conv_fn`)];
minc-tools-2.3.00+dfsg/conversion/siemens_mosaic2mnc/siemens_mosaic2mnc-320-
##############################################
minc-tools-2.3.00+dfsg/Testing/mincresample-test.sh-14-$MINCRESAMPLE_BIN -clobber test-rnd.mnc mincresample-out.mnc
minc-tools-2.3.00+dfsg/Testing/mincresample-test.sh:15:r1=`$MINCSTATS_BIN -quiet -sum mincresample-out.mnc`
minc-tools-2.3.00+dfsg/Testing/mincresample-test.sh-16-if [[ $r1 != "250" ]]; then
##############################################
minc-tools-2.3.00+dfsg/Testing/mincresample-test.sh-21-$MINCRESAMPLE_BIN -keep_real_range -clobber test-rnd.mnc mincresample-out.mnc
minc-tools-2.3.00+dfsg/Testing/mincresample-test.sh:22:r2=`$MINCSTATS_BIN -quiet -sum mincresample-out.mnc`
minc-tools-2.3.00+dfsg/Testing/mincresample-test.sh-23-if [[ $r2 != "250" ]]; then
##############################################
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl-35-#
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl:36:system("$mincreshape_bin -quiet -clobber -unsigned -short test-one.mnc mincreshape-t1.mnc");
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl:37:my $r1=`$mincstats_bin -clobber -integer_histogram -histogram mincreshape-t1.txt -quiet -sum mincreshape-t1.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl-38-if ($r1 != 125)
##############################################
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl-51-
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl:52:system("$mincreshape_bin -quiet -clobber -start -1,-1,-1 mincreshape-t1.mnc mincreshape-t2.mnc");
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl:53:my $r1=`$mincstats_bin -clobber -integer_histogram -histogram mincreshape-t2.txt -quiet -sum mincreshape-t2.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl-54-my @h2 = read_histogram('mincreshape-t2.txt');
##############################################
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl-62-
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl:63:system("$mincreshape_bin -quiet -fillvalue 2 -clobber -start -1,-1,-1 mincreshape-t1.mnc mincreshape-t3.mnc");
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl:64:my $r1=`$mincstats_bin -clobber -integer_histogram -histogram mincreshape-t3.txt -quiet -sum mincreshape-t3.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl-65-my @h3 = read_histogram('mincreshape-t3.txt');
##############################################
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl-73-
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl:74:system("$mincreshape_bin -quiet -clobber -ydirection -unsigned -byte test-rnd.mnc mincreshape-t4.mnc");
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl:75:my $r1=`$mincstats_bin -clobber -integer_histogram -histogram mincreshape-t4.txt -quiet -sum2 mincreshape-t4.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl-76-if (int($r1) != 750)
##############################################
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl-80-}
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl:81:my $r1 = `$mincinfo_bin -attvalue yspace:step test-rnd.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl:82:my $r2 = `$mincinfo_bin -attvalue yspace:step mincreshape-t4.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl-83-if ($r1 != -$r2)
##############################################
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl-88-}
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl:89:my $r1 = `$mincextract_bin -byte -range 0 4 -start 4,0,0 -count 1,5,1 test-rnd.mnc | od -An -td1`;
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl:90:my $r2 = `$mincextract_bin -byte -range 0 4 -start 4,0,0 -count 1,5,1 mincreshape-t4.mnc | od -An -td1`;
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl-91-my @a1 = split(' ', $r1);
##############################################
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl-111-
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl:112:system("$mincreshape_bin -clobber -quiet -unsigned -byte test-rnd.mnc mincreshape-t5a.mnc");
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl:113:system("$mincreshape_bin -quiet -fillvalue 100 -clobber -start -1,0,0 mincreshape-t5a.mnc mincreshape-t5.mnc");
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl:114:my $r1=`$mincstats_bin -clobber -integer_histogram -histogram mincreshape-t5.txt -quiet -sum mincreshape-t5.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl-115-my @h5 = read_histogram('mincreshape-t5.txt');
##############################################
minc-tools-2.3.00+dfsg/Testing/mincaverage-test.sh-10-$MINCAVERAGE_BIN -clobber mincaverage-in0.mnc mincaverage-in1.mnc mincaverage-out.mnc
minc-tools-2.3.00+dfsg/Testing/mincaverage-test.sh:11:r1=`$MINCSTATS_BIN -quiet -sum mincaverage-out.mnc`
minc-tools-2.3.00+dfsg/Testing/mincaverage-test.sh-12-if [[ $r1 != "-88.5" ]]; then
##############################################
minc-tools-2.3.00+dfsg/Testing/mincaverage-test.sh-17-$MINCAVERAGE_BIN -normalize -clobber mincaverage-in0.mnc mincaverage-in1.mnc mincaverage-out.mnc
minc-tools-2.3.00+dfsg/Testing/mincaverage-test.sh:18:r2=`$MINCSTATS_BIN -quiet -sum mincaverage-out.mnc`
minc-tools-2.3.00+dfsg/Testing/mincaverage-test.sh-19-if [[ $r2 != "-22.25" ]]; then
##############################################
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-13-
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl:14:my $r1 = `$mincinfo_bin -version`;
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-15-if ($? != 0)
##############################################
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-26-
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl:27:my $r1 = `$mincinfo_bin -help 2>&1`;
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-28-if ($? != 256)
##############################################
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-41-
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl:42:my $r1 = `$mincinfo_bin test-zero.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-43-my $c2result = <<HERE;
##############################################
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-60-
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl:61:my $r1 = `$mincinfo_bin -dimnames test-zero.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-62-if ($r1 ne "xspace yspace zspace \n")
##############################################
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-70-
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl:71:my $r1 = `$mincinfo_bin -varnames test-zero.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-72-if ($r1 ne "image image-min image-max xspace yspace zspace acquisition patient study \n")
##############################################
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-80-
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl:81:my $r1 = `$mincinfo_bin -dimlength xspace test-zero.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-82-if ($r1 ne "5\n")
##############################################
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-90-
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl:91:my $r1 = `$mincinfo_bin -vartype image-max -vartype image -vartype study test-zero.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-92-my @arr = split(/^/m, $r1);
##############################################
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-102-
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl:103:my $r1 = `$mincinfo_bin -vardims study -vard image test-zero.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-104-my @arr = split(/^/m, $r1);
##############################################
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-114-
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl:115:my $r1 = `$mincinfo_bin -varatt xspace test-zero.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-116-my @arr = split(/^/m, $r1);
##############################################
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-122-}
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl:123:my $r1 = `$mincinfo_bin -varatt image test-zero.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-124-my @arr = split(/^/m, $r1);
##############################################
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-133-
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl:134:my $r1 = `$mincinfo_bin -varval xspace test-zero.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-135-my @arr = split(/^/m, $r1);
##############################################
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-141-}
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl:142:my $r1 = `$mincinfo_bin -varvalues image-max test-rnd.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-143-my @arr = split(/^/m, $r1);
##############################################
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-152-
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl:153:my $r1 = `$mincinfo_bin -atttype image:valid_range -atttype xspace:length -atttype image:dimorder test-zero.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-154-my @arr = split(/^/m, $r1);
##############################################
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-164-
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl:165:my $r1 = `$mincinfo_bin -attvalue image:valid_range -attvalue xspace:length -attvalue image:dimorder test-zero.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-166-my @arr = split(/^/m, $r1);
##############################################
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-176-
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl:177:my $r1 = `$mincinfo_bin -minc_ver test-zero.mnc test-rnd.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-178-my @arr = split(/^/m, $r1);
##############################################
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-188-
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl:189:my $r1 = `$mincinfo_bin -error_string Testing -attvalue image:xyzzy test-zero.mnc test-rnd.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl-190-my @arr = split(/^/m, $r1);
##############################################
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh-15-$MINCCALC_BIN -clobber -quiet -expression "A[0]+A[1];" test-one.mnc test-two.mnc minccalc-out.mnc
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh:16:r1=`$MINCSTATS_BIN -quiet -sum minccalc-out.mnc`
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh-17-if [[ $r1 != '375' ]]; then
##############################################
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh-26-$MINCCALC_BIN -clobber -quiet -expression "A[0]*A[1]" test-one.mnc test-two.mnc minccalc-out.mnc
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh:27:r1=`$MINCSTATS_BIN -quiet -sum minccalc-out.mnc`
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh-28-if [[ $r1 != '250' ]]; then
##############################################
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh-39-$MINCCALC_BIN -clobber -quiet -expression "ratio = A[0]/A[1]; exp(-ratio)" test-one.mnc test-two.mnc minccalc-out.mnc
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh:40:r1=`$MINCSTATS_BIN -quiet -sum minccalc-out.mnc`
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh-41-if [[ $r1 != '75.81633329' ]]; then
##############################################
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh-52-$MINCCALC_BIN -clobber -quiet -expression "x = cos(A[0])+A[1]; sqrt(x)" test-zero.mnc test-two.mnc minccalc-out.mnc
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh:53:r1=`$MINCSTATS_BIN -quiet -sum minccalc-out.mnc`
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh-54-if [[ $r1 != '216.5063471' ]]; then
##############################################
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh-65-$MINCCALC_BIN -clobber -quiet -expression "s0=s1=s2=0; for {i in [0:len(A))} { v=A[i]; s0 = s0 + 1; s1 = s1 + v; s2 = s2 + v*v; }; stdev = (s0>1) ? sqrt((s2 - s1*s1/s0) / (s0-1)) : (s0 > 0) ? 0 : NaN ; mean = (s0 > 0) ? s1 / s0 : NaN;" test-one.mnc test-one.mnc test-two.mnc -outfile mean minccalc-out.mnc -outfile stdev minccalc-out2.mnc
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh:66:r1=`$MINCSTATS_BIN -quiet -sum minccalc-out.mnc`
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh-67-if [[ $r1 != '166.6666716' ]]; then
##############################################
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh-72-fi
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh:73:r1=`$MINCSTATS_BIN -quiet -sum minccalc-out2.mnc`
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh-74-if [[ $r1 != '72.16878235' ]]; then
##############################################
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh-83-$MINCCALC_BIN -clobber -quiet -expression "clamp(A[0]+A[1], 1, 4)" test-one.mnc test-rnd.mnc minccalc-out.mnc
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh:84:r1=`$MINCSTATS_BIN -quiet -min minccalc-out.mnc`
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh-85-if [[ $r1 != '1' ]]; then
##############################################
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh-90-fi
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh:91:r1=`$MINCSTATS_BIN -quiet -max minccalc-out.mnc`
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh-92-if [[ $r1 != '4' ]]; then
##############################################
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh-101-#
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh:102:r1=`$MINCSTATS_BIN -quiet -sum minccalc-out.mnc`
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh-103-if [[ $r1 != '350' ]]; then
##############################################
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh-115-#
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh:116:r1=`$MINCSTATS_BIN -quiet -sum minccalc-out.mnc`
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh-117-if [[ $r1 != '50' ]]; then
##############################################
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh-126-$MINCCALC_BIN -clobber -quiet -expression 'm=0;n=len(A); for {i in (m:n)} { 1; }; m;' test-zero.mnc minccalc-out.mnc
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh:127:r1=`$MINCSTATS_BIN -quiet -sum minccalc-out.mnc`
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh-128-if [[ $r1 != '0' ]]; then
##############################################
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh-137-$MINCCALC_BIN -clobber -quiet -expression 'm=0;n=len(A); for {i in (m:n)} { 1; }; n;' test-zero.mnc minccalc-out.mnc
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh:138:r1=`$MINCSTATS_BIN -quiet -sum minccalc-out.mnc`
minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh-139-if [[ $r1 != '125' ]]; then
##############################################
minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl-13-
minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl:14:my $r1 = `$mincstats_bin test-zero.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl-15-if ($? != 0)
##############################################
minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl-56-
minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl:57:my $r1 = `$mincstats_bin -sum -sum2 test-rnd.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl-58-my @arr = split(/^/m, $r1);
##############################################
minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl-69-
minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl:70:my $r1 = `$mincstats_bin -mean test-rnd.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl-71-if ($r1 !~ /^Mean:\s+2$/)
##############################################
minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl-79-
minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl:80:my $r1 = `$mincstats_bin -stddev -variance test-rnd.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl-81-my @arr = split(/^/m, $r1);
##############################################
minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl-92-
minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl:93:my $r1 = `$mincstats_bin -max -min test-rnd.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl-94-my @arr = split(/^/m, $r1);
##############################################
minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl-104-
minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl:105:my $r1 = `$mincstats_bin -com test-rnd.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl-106-my @arr = split(/^/m, $r1);
##############################################
minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl-120-
minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl:121:my $r1 = `$mincstats_bin -median -entropy test-rnd.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl-122-my @arr = split(/^/m, $r1);
##############################################
minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl-136-
minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl:137:my $r1 = `$mincstats_bin -clobber -histogram test-hist.txt test-rnd.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl-138-open(FH, "< test-hist.txt") or die "Cannot open histogram for reading: $!";
##############################################
minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl-177-
minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl:178:my $r1 = `$mincstats_bin -clobber -integer_hist -histogram test-ihist.txt test-rnd.mnc`;
minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl-179-open(FH, "< test-ihist.txt") or die "Cannot open histogram for reading: $!";
##############################################
minc-tools-2.3.00+dfsg/debian/createmanpages-4-
minc-tools-2.3.00+dfsg/debian/createmanpages:5:VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//' -e 's/[+~]dfsg$//'`
minc-tools-2.3.00+dfsg/debian/createmanpages-6-NAME=`grep "^Description:" debian/control | sed 's/^Description: *//' | head -n1`
##############################################
minc-tools-2.3.00+dfsg/.pc/01_mincedit-sensible-viewer.diff/progs/mincedit/mincedit-85-
minc-tools-2.3.00+dfsg/.pc/01_mincedit-sensible-viewer.diff/progs/mincedit/mincedit:86:me=`basename $0`
minc-tools-2.3.00+dfsg/.pc/01_mincedit-sensible-viewer.diff/progs/mincedit/mincedit-87-usage="Usage: $me <minc file> [<editor>]"
##############################################
minc-tools-2.3.00+dfsg/.pc/01_mincedit-sensible-viewer.diff/progs/mincedit/mincedit-135-infile="$1"
minc-tools-2.3.00+dfsg/.pc/01_mincedit-sensible-viewer.diff/progs/mincedit/mincedit:136:backup_infile=`echo ${infile} | sed -e "s/\.mnc/\.bu-$$\.mnc/"`
minc-tools-2.3.00+dfsg/.pc/01_mincedit-sensible-viewer.diff/progs/mincedit/mincedit-137-cdl_prefix=mincedit-$$