=========================================================== .___ __ __ _________________ __ __ __| _/|__|/ |_ / ___\_` __ \__ \ | | \/ __ | | \\_ __\ / /_/ > | \// __ \| | / /_/ | | || | \___ /|__| (____ /____/\____ | |__||__| /_____/ \/ \/ grep rough audit - static analysis tool v2.8 written by @Wireghoul =================================[justanotherhacker.com]=== mosdepth-0.3.1+ds/CHANGES.md-57-+ fix overflow with huge intervals to --by mosdepth-0.3.1+ds/CHANGES.md:58:+ **NOTE** change to output file name of `*.dist.txt`. A file named `$prefix.mosdepth.global.dist.txt` mosdepth-0.3.1+ds/CHANGES.md:59: will always be created and `$prefix.mosdepth.region.dist.txt` will be created if `--by` is specified. mosdepth-0.3.1+ds/CHANGES.md:60: Previously, there was only a single file named `$prefix.mosdepth.dist.txt` which no longer exists. mosdepth-0.3.1+ds/CHANGES.md-61- This allows users to, for example, use --by to see coverage of gene regions for WGS, and to see the ############################################## mosdepth-0.3.1+ds/README.md-136- mosdepth-0.3.1+ds/README.md:137:Output will go to `$sample.mosdepth.dist.txt` mosdepth-0.3.1+ds/README.md-138- ############################################## mosdepth-0.3.1+ds/README.md-181- mosdepth-0.3.1+ds/README.md:182:The `$prefix.mosdepth.global.dist.txt` file contains, a cumulative distribution indicating the mosdepth-0.3.1+ds/README.md:183:proportion of total bases (or the proportion of the `--by` for `$prefix.mosdepth.region.dist.txt`) that were covered mosdepth-0.3.1+ds/README.md-184-for at least a given coverage value. It does this for each chromosome, and for the ############################################## mosdepth-0.3.1+ds/debian/rules-17- for f in debian/missing-sources/*; do \ mosdepth-0.3.1+ds/debian/rules:18: outp=tests/`echo $$f | sed -e 's/sam/bam/' -e 's/debian\/missing\-sources\///'` ; \ mosdepth-0.3.1+ds/debian/rules-19- cat $$f | samtools view -Sb - > $$outp ; \