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              grep rough audit - static analysis tool
                  v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
multiqc-1.9+dfsg/docs/installation.md-239-MultiQC comes in two parts - the `multiqc` python package and the
multiqc-1.9+dfsg/docs/installation.md:240:`multiqc` executable script. The former must be available in `$PYTHONPATH`
multiqc-1.9+dfsg/docs/installation.md:241:and the script must be available on the `$PATH`.
multiqc-1.9+dfsg/docs/installation.md-242-
multiqc-1.9+dfsg/docs/installation.md-243-A typical installation procedure with an environment module Python install
multiqc-1.9+dfsg/docs/installation.md:244:might look like this: _(Note that `$PYTHONPATH` must be defined before `pip` installation.)_
multiqc-1.9+dfsg/docs/installation.md-245-
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multiqc-1.9+dfsg/docs/reports.md-160-regex groups can be used - define a group match with parentheses and
multiqc-1.9+dfsg/docs/reports.md:161:use the matching value with `$1`, `$2` etc. For example - a search string
multiqc-1.9+dfsg/docs/reports.md:162:`SRR283(\d{3})` and replace string `$1_SRR283` would move the final three
multiqc-1.9+dfsg/docs/reports.md-163-digits of matching sample names to the start of the name.
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multiqc-1.9+dfsg/multiqc/modules/supernova/supernova.py-24-        self.headers = OrderedDict()
multiqc-1.9+dfsg/multiqc/modules/supernova/supernova.py:25:        self.headers['Asm size'] = {
multiqc-1.9+dfsg/multiqc/modules/supernova/supernova.py-26-                'description': 'assembly size (in megabases) ;only scaffolds >= 10 kb',
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multiqc-1.9+dfsg/multiqc/modules/supernova/supernova.py-371-        stats = {
multiqc-1.9+dfsg/multiqc/modules/supernova/supernova.py:372:            'assembly_size': 'Asm size',
multiqc-1.9+dfsg/multiqc/modules/supernova/supernova.py-373-            'bases_per_read': 'Read len',
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multiqc-1.9+dfsg/multiqc/modules/supernova/supernova.py-455-                'SCAFFOLD N50': 'Scaff N50',
multiqc-1.9+dfsg/multiqc/modules/supernova/supernova.py:456:                'ASSEMBLY SIZE': 'Asm size',
multiqc-1.9+dfsg/multiqc/modules/supernova/supernova.py-457-                'MISSING 10KB': '% missing 10Kb',
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multiqc-1.9+dfsg/test/run_unit_tests.sh-9-{ # Fake try/catch - `readlink -f` doesn't work on OSX
multiqc-1.9+dfsg/test/run_unit_tests.sh:10:    MULTIQC_TEST_ROOT_CANON="`readlink -f $MULTIQC_TEST_ROOT 2> /dev/null`"
multiqc-1.9+dfsg/test/run_unit_tests.sh-11-} || {
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multiqc-1.9+dfsg/debian/createmanpages-4-
multiqc-1.9+dfsg/debian/createmanpages:5:VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//' -e 's/[+~]dfsg$//'`
multiqc-1.9+dfsg/debian/createmanpages-6-NAME=`grep "^Description:" debian/control | sed 's/^Description: *//' | head -n1`