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              grep rough audit - static analysis tool
                  v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
phyml-3.3.20200621/doc/phyml-manual.tex-2719-% \end{eqnarray*} where $\mu_x$ and $\sigma_x$ are the mean and standard deviation of the $X_i$ values
phyml-3.3.20200621/doc/phyml-manual.tex:2720:% respectively and $k$ is the lag. The value of $r$ that is used in PhyTime corresponds to the case where $k=1$,
phyml-3.3.20200621/doc/phyml-manual.tex-2721-% which therefore gives a first order  approximation of the `average' autocorrelation value (i.e., the
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phyml-3.3.20200621/doc/phyml-manual.tex-3172-  make sure that your sequence file is a plain text file, with standard carriage return characters (i.e.,
phyml-3.3.20200621/doc/phyml-manual.tex:3173:  corresponding to ``$\backslash$\x{n}'', or ``$\backslash$\x{r}'')
phyml-3.3.20200621/doc/phyml-manual.tex-3174-\end{itemize}
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phyml-3.3.20200621/src/mcmc.h-20-void MCMC_Lexp(t_tree *tree);
phyml-3.3.20200621/src/mcmc.h:21:void MCMC_Print_Param(t_mcmc *mcmc, t_tree *tree);
phyml-3.3.20200621/src/mcmc.h-22-t_mcmc *MCMC_Make_MCMC_Struct();
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phyml-3.3.20200621/src/rates.c-75-      PhyML_Fprintf(stderr,"\n. Err. in file %s at line %d\n",__FILE__,__LINE__);
phyml-3.3.20200621/src/rates.c:76:      MCMC_Print_Param(tree->mcmc,tree);
phyml-3.3.20200621/src/rates.c-77-      Exit("\n");
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phyml-3.3.20200621/src/rates.c-320-	  PhyML_Fprintf(stderr,"\n. Err. in file %s at line %d\n",__FILE__,__LINE__);
phyml-3.3.20200621/src/rates.c:321:	  MCMC_Print_Param(tree->mcmc,tree);
phyml-3.3.20200621/src/rates.c-322-	  Exit("\n");