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        / /_/  >  | \// __ \|  |  / /_/ | |  ||  |  
        \___  /|__|  (____  /____/\____ | |__||__|  
       /_____/            \/           \/           
              grep rough audit - static analysis tool
                  v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
placnet-1.03/debian/get-orig-source-14-set -e
placnet-1.03/debian/get-orig-source:15:NAME=`dpkg-parsechangelog | awk '/^Source/ { print $2 }'`
placnet-1.03/debian/get-orig-source:16:VERSION=`dpkg-parsechangelog | awk '/^Version:/ { print $2 }' | sed 's/\([0-9\.]\+\)-[0-9]\+$/\1/'`
placnet-1.03/debian/get-orig-source-17-
##############################################
placnet-1.03/.pc/fix_usage_output.patch/placnet.pl-117-	
placnet-1.03/.pc/fix_usage_output.patch/placnet.pl:118:	system("gmhmmp_heuristic.pl -s $contigsFile -out tmpGM -a");
placnet-1.03/.pc/fix_usage_output.patch/placnet.pl-119-	$fastaProt = gm2fasta("tmpGM.lst");
placnet-1.03/.pc/fix_usage_output.patch/placnet.pl:120:	system("gmhmmp_heuristic.pl -s $contigsFile -out tmpGM -d");
placnet-1.03/.pc/fix_usage_output.patch/placnet.pl-121-	$fastaNucl = gm2fasta("tmpGM.lst");
##############################################
placnet-1.03/.pc/fix_usage_output.patch/placnet.pl-201-	{
placnet-1.03/.pc/fix_usage_output.patch/placnet.pl:202:		system("blastn -query $contigsFile -db $refDBFile -out tmpMegaBlast.txt -num_alignments 0 -evalue 1e-25");
placnet-1.03/.pc/fix_usage_output.patch/placnet.pl-203-	}elsif ($type eq "fasta")
placnet-1.03/.pc/fix_usage_output.patch/placnet.pl-204-	{
placnet-1.03/.pc/fix_usage_output.patch/placnet.pl:205:		system("makeblastdb -in $refDBFile -out tmpRefDB -dbtype nucl");
placnet-1.03/.pc/fix_usage_output.patch/placnet.pl:206:		system("blastn -query $contigsFile -db tmpRefDB -out tmpMegaBlast.txt -num_alignments 0 -evalue 1e-25");
placnet-1.03/.pc/fix_usage_output.patch/placnet.pl-207-	}else{
##############################################
placnet-1.03/.pc/fix_usage_output.patch/placnet.pl-383-		
placnet-1.03/.pc/fix_usage_output.patch/placnet.pl:384:		system("makeblastdb -in $dbFastaFile -out $db -dbtype $dbType");
placnet-1.03/.pc/fix_usage_output.patch/placnet.pl-385-		
##############################################
placnet-1.03/.pc/fix_usage_output.patch/placnet.pl-395-	{
placnet-1.03/.pc/fix_usage_output.patch/placnet.pl:396:		system("blastp -query $prefix.gm.faa -db $db -outfmt 6 -evalue $evalue -out tmp$name.blast -num_alignments 1"); 
placnet-1.03/.pc/fix_usage_output.patch/placnet.pl-397-	}elsif ($dbType eq "nucl")
placnet-1.03/.pc/fix_usage_output.patch/placnet.pl-398-	{
placnet-1.03/.pc/fix_usage_output.patch/placnet.pl:399:		system("blastn -query $contigsFile -db $db -outfmt 6 -evalue $evalue -out tmp$name.blast -num_alignments 1");
placnet-1.03/.pc/fix_usage_output.patch/placnet.pl-400-	}
##############################################
placnet-1.03/placnet.pl-117-	
placnet-1.03/placnet.pl:118:	system("gmhmmp_heuristic.pl -s $contigsFile -out tmpGM -a");
placnet-1.03/placnet.pl-119-	$fastaProt = gm2fasta("tmpGM.lst");
placnet-1.03/placnet.pl:120:	system("gmhmmp_heuristic.pl -s $contigsFile -out tmpGM -d");
placnet-1.03/placnet.pl-121-	$fastaNucl = gm2fasta("tmpGM.lst");
##############################################
placnet-1.03/placnet.pl-201-	{
placnet-1.03/placnet.pl:202:		system("blastn -query $contigsFile -db $refDBFile -out tmpMegaBlast.txt -num_alignments 0 -evalue 1e-25");
placnet-1.03/placnet.pl-203-	}elsif ($type eq "fasta")
placnet-1.03/placnet.pl-204-	{
placnet-1.03/placnet.pl:205:		system("makeblastdb -in $refDBFile -out tmpRefDB -dbtype nucl");
placnet-1.03/placnet.pl:206:		system("blastn -query $contigsFile -db tmpRefDB -out tmpMegaBlast.txt -num_alignments 0 -evalue 1e-25");
placnet-1.03/placnet.pl-207-	}else{
##############################################
placnet-1.03/placnet.pl-383-		
placnet-1.03/placnet.pl:384:		system("makeblastdb -in $dbFastaFile -out $db -dbtype $dbType");
placnet-1.03/placnet.pl-385-		
##############################################
placnet-1.03/placnet.pl-395-	{
placnet-1.03/placnet.pl:396:		system("blastp -query $prefix.gm.faa -db $db -outfmt 6 -evalue $evalue -out tmp$name.blast -num_alignments 1"); 
placnet-1.03/placnet.pl-397-	}elsif ($dbType eq "nucl")
placnet-1.03/placnet.pl-398-	{
placnet-1.03/placnet.pl:399:		system("blastn -query $contigsFile -db $db -outfmt 6 -evalue $evalue -out tmp$name.blast -num_alignments 1");
placnet-1.03/placnet.pl-400-	}