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        / /_/  >  | \// __ \|  |  / /_/ | |  ||  |  
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              grep rough audit - static analysis tool
                  v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
plasmidseeker-1.3+dfsg/database_builder.pl-111-	my $cmd = "head -n 1 $_";
plasmidseeker-1.3+dfsg/database_builder.pl:112:	my $head = `$cmd`;
plasmidseeker-1.3+dfsg/database_builder.pl:113:	my $length = `awk '/^>/{if (l!="") print l; l=0; next}{l+=length(\$0)}END{print l}' $_`;
plasmidseeker-1.3+dfsg/database_builder.pl-114-	#$head = (split(/\|\s+/,$head))[1]; Split only in RefSeq format
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plasmidseeker-1.3+dfsg/debian/createmanpages-4-
plasmidseeker-1.3+dfsg/debian/createmanpages:5:VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//' -e 's/[+~]dfsg$//'`
plasmidseeker-1.3+dfsg/debian/createmanpages-6-NAME=`grep "^Description:" debian/control | sed 's/^Description: *//' | head -n1`
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plasmidseeker-1.3+dfsg/.pc/use_debian_packaged_genometester.patch/plasmidseeker.pl-158-	my $cmd = "$gdistribution $output_dir/".$runId."tmp_list_cov_$word\_intrsec.list $output_dir/".$runId."tmp_list_cov_$word\_intrsec.list 2> /dev/null";
plasmidseeker-1.3+dfsg/.pc/use_debian_packaged_genometester.patch/plasmidseeker.pl:159:	my @found = `$cmd`; # Find median
plasmidseeker-1.3+dfsg/.pc/use_debian_packaged_genometester.patch/plasmidseeker.pl-160-	print_distribution($distr_name,$zero_kmers,@found); # Print distribution for testing
##############################################
plasmidseeker-1.3+dfsg/.pc/use_debian_packaged_genometester.patch/plasmidseeker.pl-167-	$cmd = "$gdistribution $output_dir/".$runId."tmp_final_$word\_0_diff1.list $output_dir/".$runId."tmp_final_$word\_0_diff1.list 2> /dev/null";
plasmidseeker-1.3+dfsg/.pc/use_debian_packaged_genometester.patch/plasmidseeker.pl:168:	@found = `$cmd`; # Find final median
plasmidseeker-1.3+dfsg/.pc/use_debian_packaged_genometester.patch/plasmidseeker.pl-169-	$median = find_median(@found);
##############################################
plasmidseeker-1.3+dfsg/.pc/use_debian_packaged_genometester.patch/plasmidseeker.pl-282-my $cmd = "$glistmaker $inputFilesString -w $word -o $output_dir/".$runId."tmp_sample";
plasmidseeker-1.3+dfsg/.pc/use_debian_packaged_genometester.patch/plasmidseeker.pl:283:system ($cmd);
plasmidseeker-1.3+dfsg/.pc/use_debian_packaged_genometester.patch/plasmidseeker.pl-284-$wgs_list = "$output_dir/".$runId."tmp_sample_$word\.list";
##############################################
plasmidseeker-1.3+dfsg/.pc/use_debian_packaged_genometester.patch/plasmidseeker.pl-290-	$cmd = "$glistmaker $bacteria -w $word -o $output_dir/".$runId."tmp_closest";
plasmidseeker-1.3+dfsg/.pc/use_debian_packaged_genometester.patch/plasmidseeker.pl:291:	system ($cmd);
plasmidseeker-1.3+dfsg/.pc/use_debian_packaged_genometester.patch/plasmidseeker.pl-292-	$bacterial_cov = cut_list(($wgs_list,$bacterial_distr,"$output_dir/".$runId."tmp_closest_$word\.list"));
##############################################
plasmidseeker-1.3+dfsg/.pc/fix_installation.patch/plasmidseeker.pl-158-	my $cmd = "$gdistribution $output_dir/".$runId."tmp_list_cov_$word\_intrsec.list $output_dir/".$runId."tmp_list_cov_$word\_intrsec.list 2> /dev/null";
plasmidseeker-1.3+dfsg/.pc/fix_installation.patch/plasmidseeker.pl:159:	my @found = `$cmd`; # Find median
plasmidseeker-1.3+dfsg/.pc/fix_installation.patch/plasmidseeker.pl-160-	print_distribution($distr_name,$zero_kmers,@found); # Print distribution for testing
##############################################
plasmidseeker-1.3+dfsg/.pc/fix_installation.patch/plasmidseeker.pl-167-	$cmd = "$gdistribution $output_dir/".$runId."tmp_final_$word\_0_diff1.list $output_dir/".$runId."tmp_final_$word\_0_diff1.list 2> /dev/null";
plasmidseeker-1.3+dfsg/.pc/fix_installation.patch/plasmidseeker.pl:168:	@found = `$cmd`; # Find final median
plasmidseeker-1.3+dfsg/.pc/fix_installation.patch/plasmidseeker.pl-169-	$median = find_median(@found);
##############################################
plasmidseeker-1.3+dfsg/.pc/fix_installation.patch/plasmidseeker.pl-282-my $cmd = "$glistmaker $inputFilesString -w $word -o $output_dir/".$runId."tmp_sample";
plasmidseeker-1.3+dfsg/.pc/fix_installation.patch/plasmidseeker.pl:283:system ($cmd);
plasmidseeker-1.3+dfsg/.pc/fix_installation.patch/plasmidseeker.pl-284-$wgs_list = "$output_dir/".$runId."tmp_sample_$word\.list";
##############################################
plasmidseeker-1.3+dfsg/.pc/fix_installation.patch/plasmidseeker.pl-290-	$cmd = "$glistmaker $bacteria -w $word -o $output_dir/".$runId."tmp_closest";
plasmidseeker-1.3+dfsg/.pc/fix_installation.patch/plasmidseeker.pl:291:	system ($cmd);
plasmidseeker-1.3+dfsg/.pc/fix_installation.patch/plasmidseeker.pl-292-	$bacterial_cov = cut_list(($wgs_list,$bacterial_distr,"$output_dir/".$runId."tmp_closest_$word\.list"));
##############################################
plasmidseeker-1.3+dfsg/plasmidseeker.pl-158-	my $cmd = "$gdistribution $output_dir/".$runId."tmp_list_cov_$word\_intrsec.list $output_dir/".$runId."tmp_list_cov_$word\_intrsec.list 2> /dev/null";
plasmidseeker-1.3+dfsg/plasmidseeker.pl:159:	my @found = `$cmd`; # Find median
plasmidseeker-1.3+dfsg/plasmidseeker.pl-160-	print_distribution($distr_name,$zero_kmers,@found); # Print distribution for testing
##############################################
plasmidseeker-1.3+dfsg/plasmidseeker.pl-167-	$cmd = "$gdistribution $output_dir/".$runId."tmp_final_$word\_0_diff1.list $output_dir/".$runId."tmp_final_$word\_0_diff1.list 2> /dev/null";
plasmidseeker-1.3+dfsg/plasmidseeker.pl:168:	@found = `$cmd`; # Find final median
plasmidseeker-1.3+dfsg/plasmidseeker.pl-169-	$median = find_median(@found);
##############################################
plasmidseeker-1.3+dfsg/plasmidseeker.pl-282-my $cmd = "$glistmaker $inputFilesString -w $word -o $output_dir/".$runId."tmp_sample";
plasmidseeker-1.3+dfsg/plasmidseeker.pl:283:system ($cmd);
plasmidseeker-1.3+dfsg/plasmidseeker.pl-284-$wgs_list = "$output_dir/".$runId."tmp_sample_$word\.list";
##############################################
plasmidseeker-1.3+dfsg/plasmidseeker.pl-290-	$cmd = "$glistmaker $bacteria -w $word -o $output_dir/".$runId."tmp_closest";
plasmidseeker-1.3+dfsg/plasmidseeker.pl:291:	system ($cmd);
plasmidseeker-1.3+dfsg/plasmidseeker.pl-292-	$bacterial_cov = cut_list(($wgs_list,$bacterial_distr,"$output_dir/".$runId."tmp_closest_$word\.list"));